Citrus Sinensis ID: 019426

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAVSKQI
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHcccccccccccccccHHHHcccccccEEEEEEEcccccccccccEEEEEEccccccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHccccccccccccEEEEEEcHHHHHHHHcccccccccccccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHccHHHccccccHHHHHHcHHHHccccccccHHHHHccccccccEEEEEEEEccEEEEEEEEEEEEEEcccHHHHHHHHHHcccccEEEEEEEHHHHHcEcccccccEHHHHHHHHHHHHHccccccHHHHHcEEEEEEcHHHHHHHHHccccccHHccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLSILIENMgllcsknrrynaadseenAQTAEIERRIEQETKAEKHIQKLLLlgagesgksTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSeiggrldyprLTKELAEDIEtlwadpaiqetyahgnelqlpdcANYFMENLQrlsdanyvptkddvLYARVRTTGVVeiqfspvgehkksgevYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAVSKQI
Flexible Loop (DISEMBL)
MLSILIENMGLLCSKNRrynaadseenaqTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEigeklseiggrldypRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVeiqfspvgehkksgevyRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAVSKQI
Low Complexity Region (SEG)
MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAVSKQI
Disordered region (IsUnstruct)
****LIENMGLLC*********************************IQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGS****************************IGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAV****
Disordered Region (DISOPRED)
***ILIENMGLL*********************************HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAVSKQI
Disordered Region (DISEMBL)
MLSILIENMGLLCSKNRRYN***********EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAVSKQI
Disordered Region (DISPRO)
*L***IEN*GLLC*****************AEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAVSKQI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKKIFWYSFAENFLHAVSKQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
P49082	384	Guanine nucleotide-bindin	N/A	no	0.818	0.726	0.892	1e-145
Q40224	384	Guanine nucleotide-bindin	N/A	no	0.818	0.726	0.870	1e-144
P93163	385	Guanine nucleotide-bindin	yes	no	0.818	0.724	0.864	1e-144
O04278	384	Guanine nucleotide-bindin	N/A	no	0.818	0.726	0.863	1e-143
P93564	384	Guanine nucleotide-bindin	N/A	no	0.818	0.726	0.842	1e-142
O04279	384	Guanine nucleotide-bindin	N/A	no	0.818	0.726	0.849	1e-141
P26981	384	Guanine nucleotide-bindin	N/A	no	0.818	0.726	0.835	1e-140
P18064	383	Guanine nucleotide-bindin	yes	no	0.815	0.725	0.845	1e-140
P49084	385	Guanine nucleotide-bindin	no	no	0.818	0.724	0.838	1e-139
Q0DJ33	380	Guanine nucleotide-bindin	yes	no	0.818	0.734	0.770	1e-125

>sp|P49082|GPA1_LOTJA Guanine nucleotide-binding protein alpha-1 subunit OS=Lotus japonicus GN=GPA1 PE=2 SV=1

 Score =  516 bits (1328), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 249/279 (89%), Positives = 261/279 (93%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCSKNRRYN AD+EEN QTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSKNRRYNDADTEENTQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY  VIHANVYQTIK+L+DG+KELAQN+ D  K+V+S ENKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYQPVIHANVYQTIKLLHDGAKELAQNDVDFSKYVISDENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYP LTKELA +IE LW D AIQETYA GNELQ+PDC +YFMENL RLSDANY
Sbjct: 121 SEIGGRLDYPCLTKELALEIENLWKDAAIQETYARGNELQVPDCTHYFMENLHRLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTKDDVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKDDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE KNRMMETKELF+WVLKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFE 279

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.
Lotus japonicus (taxid: 34305)

>sp|Q40224|GPA1_LUPLU Guanine nucleotide-binding protein alpha-1 subunit OS=Lupinus luteus GN=GPA1 PE=2 SV=1

 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/279 (87%), Positives = 263/279 (94%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS+NRRYN AD+EENAQ AEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRNRRYNDADAEENAQAAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ VIHANV+QTIK+L+DGSKELAQN+ DS K+V+S ENK+IGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVIHANVFQTIKLLHDGSKELAQNDVDSSKYVISDENKDIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIG +LDYP LT ELA++IETLW D AIQETYA GNELQ+P CA+YFMENLQRLSDANY
Sbjct: 121 SEIGSKLDYPYLTTELAKEIETLWEDAAIQETYARGNELQVPGCAHYFMENLQRLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTK+DVLYARVRTTGVVEIQFSPVGE+K+SGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE KNRM ETKELF+W+LKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDENKNRMTETKELFEWILKQPCFE 279

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Lupinus luteus (taxid: 3873)

>sp|P93163|GPA2_SOYBN Guanine nucleotide-binding protein alpha-2 subunit OS=Glycine max GN=GPA2 PE=2 SV=1

 Score =  510 bits (1314), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/280 (86%), Positives = 264/280 (94%), Gaps = 1/280 (0%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIE-QETKAEKHIQKLLLLGAGESGKSTIFKQI 67
           MGLLCS+NRRYN AD+EENAQTAEIERRIE +  +AEKHIQKLLLLGAGESGKSTIFKQI
Sbjct: 1   MGLLCSRNRRYNDADAEENAQTAEIERRIEVRNERAEKHIQKLLLLGAGESGKSTIFKQI 60

Query: 68  KLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEK 127
           KLLFQTGFDEAELKSY+ VIHANVYQTIK+L+DGSKE AQN+ DS K+V+S+ENKEIGEK
Sbjct: 61  KLLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDVDSSKYVISNENKEIGEK 120

Query: 128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDAN 187
           L EIGGRLDYP L+KELA++IE LW DPAIQETYA G+ELQ+PDC +YFMENLQRLSDAN
Sbjct: 121 LLEIGGRLDYPYLSKELAQEIENLWKDPAIQETYARGSELQIPDCTDYFMENLQRLSDAN 180

Query: 188 YVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA 247
           YVPTK+DVLYARVRTTGVVEIQFSPVGE+KKS EVYRLFDVGGQRNERRKWIHLFEGVSA
Sbjct: 181 YVPTKEDVLYARVRTTGVVEIQFSPVGENKKSDEVYRLFDVGGQRNERRKWIHLFEGVSA 240

Query: 248 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           VIFCAAISEYDQTLFEDE +NRMMETKELF+W+LKQPCFE
Sbjct: 241 VIFCAAISEYDQTLFEDENRNRMMETKELFEWILKQPCFE 280

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Glycine max (taxid: 3847)

>sp|O04278|GPA1_PEA Guanine nucleotide-binding protein alpha-1 subunit OS=Pisum sativum GN=GPA1 PE=2 SV=1

 Score =  507 bits (1306), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 241/279 (86%), Positives = 262/279 (93%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCSK+ RYN A +EENAQTAEIERRIE ETKAEKHI+KLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSKSNRYNDAKAEENAQTAEIERRIELETKAEKHIRKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ V+HANVYQTIK+L+DGSKE AQN+ D  K+V+S+ENK+IGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVVHANVYQTIKLLHDGSKEFAQNDVDFSKYVISTENKDIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYPRLTKELA++IE++W D AIQETYA GNELQ+PDC +YFMENLQRLSDANY
Sbjct: 121 SEIGGRLDYPRLTKELAQEIESIWKDAAIQETYARGNELQVPDCTHYFMENLQRLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTK+DVL ARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLLARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFC AISEYDQTLFEDE KNRMMETKELF+WVLKQ CFE
Sbjct: 241 IFCVAISEYDQTLFEDENKNRMMETKELFEWVLKQQCFE 279

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Pisum sativum (taxid: 3888)

>sp|P93564|GPA1_SOLTU Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum tuberosum GN=GPA1 PE=2 SV=1

 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 235/279 (84%), Positives = 263/279 (94%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG LCS+N+ Y+ AD EEN QTAEIERRIEQETKA+KHIQKLLLLGAG+SGKSTIFKQIK
Sbjct: 1   MGSLCSRNKHYSQADDEENTQTAEIERRIEQETKADKHIQKLLLLGAGDSGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELK+YI VIHANVYQTIK+L+DGSKELAQNE ++ K+++S+ENKEIGEKL
Sbjct: 61  LLFQTGFDEAELKNYIPVIHANVYQTIKILHDGSKELAQNELEASKYLLSAENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYPRLTK+L +DIE LW DPAIQET   GNELQ+PDCA+YFMENL+R SD +Y
Sbjct: 121 SEIGGRLDYPRLTKDLVQDIEALWKDPAIQETLLRGNELQVPDCAHYFMENLERFSDIHY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           +PTK+DVL+AR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 IPTKEDVLFARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE+KNRMMETKELF+WVLKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDERKNRMMETKELFEWVLKQPCFE 279

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Solanum tuberosum (taxid: 4113)

>sp|O04279|GPA2_PEA Guanine nucleotide-binding protein alpha-2 subunit OS=Pisum sativum GN=GPA2 PE=2 SV=1

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 237/279 (84%), Positives = 259/279 (92%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGL+CS+NRRY  +D EENAQ AEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLVCSRNRRYRDSDPEENAQAAEIERRIESETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAEL+SY  VI ANVYQTIKVL+DG+KELAQN+ +S K+V+S E+K+IGEKL
Sbjct: 61  LLFQTGFDEAELRSYTPVIFANVYQTIKVLHDGAKELAQNDLNSAKYVISDESKDIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIG RLDYP LTK+LA++IETLW D AIQETYA GNELQ+PDC  YFMENLQRLSDANY
Sbjct: 121 SEIGSRLDYPHLTKDLAKEIETLWEDAAIQETYARGNELQVPDCTKYFMENLQRLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTK DVLYARVRTTGVVEIQFSPVGE+K+SGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 VPTKGDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE KNR+METKELF+W+LKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDESKNRLMETKELFEWILKQPCFE 279

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Pisum sativum (taxid: 3888)

>sp|P26981|GPA1_SOLLC Guanine nucleotide-binding protein alpha-1 subunit OS=Solanum lycopersicum GN=GPA1 PE=2 SV=1

 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 233/279 (83%), Positives = 260/279 (93%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG LCS+N+ Y+ AD EEN QTAEIERRIEQETKAEKHIQKLLLLGAG+SGKSTIFKQIK
Sbjct: 1   MGSLCSRNKHYSQADDEENTQTAEIERRIEQETKAEKHIQKLLLLGAGDSGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDE ELK+YI VIHANVYQT K+L+DGSKELAQNE ++ K+++S+ENKEIGEKL
Sbjct: 61  LLFQTGFDEEELKNYIPVIHANVYQTTKILHDGSKELAQNELEASKYLLSAENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYP LTK+L +DIE LW DPAIQET   GNELQ+PDCA+YFMENL+R SD +Y
Sbjct: 121 SEIGGRLDYPHLTKDLVQDIEALWKDPAIQETLLRGNELQVPDCAHYFMENLERFSDVHY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           +PTK+DVL+AR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 IPTKEDVLFARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE+KNRMMETKELF+WVLKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDERKNRMMETKELFEWVLKQPCFE 279

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Solanum lycopersicum (taxid: 4081)

>sp|P18064|GPA1_ARATH Guanine nucleotide-binding protein alpha-1 subunit OS=Arabidopsis thaliana GN=GPA1 PE=1 SV=1

 Score =  497 bits (1280), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/279 (84%), Positives = 259/279 (92%), Gaps = 1/279 (0%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS++R ++  D++EN Q AEIERRIEQE KAEKHI+KLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRSR-HHTEDTDENTQAAEIERRIEQEAKAEKHIRKLLLLGAGESGKSTIFKQIK 59

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDE ELKSY+ VIHANVYQTIK+L+DG+KE AQNETDS K+++SSE+  IGEKL
Sbjct: 60  LLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEKL 119

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYPRLTK++AE IETLW DPAIQET A GNELQ+PDC  Y MENL+RLSD NY
Sbjct: 120 SEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINY 179

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           +PTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 180 IPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 239

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE
Sbjct: 240 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 278

Exhibits a fast rate of basal nucleotide exchange. Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. Together with GCR1, may regulate the cell cycle via a signaling cascade that uses phosphatidylinositol-specific phospholipase C (PI-PLC) as an effector and inositol 1,4,5-trisphosphate(IP(3)) as a second messenger. Promotes abscisic acid (ABA) responses in guard cells. But, together with GCR1 and GB1, acts as a negative regulator of ABA during seed germination and early seedling development. Involved in the blue light (BL) signaling. Together with GCR1 and ADT3, required for BL-mediated synthesis of phenylpyruvate and subsequently of phenylalanine (Phe), in etiolated seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|P49084|GPA1_SOYBN Guanine nucleotide-binding protein alpha-1 subunit OS=Glycine max GN=GPA1 PE=2 SV=1

 Score =  496 bits (1276), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/279 (83%), Positives = 263/279 (94%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGL+CS++RR+  A +EENAQ AEIERRIE ETKAEKHIQKLLLLGAGESG+STIFKQIK
Sbjct: 1   MGLVCSRSRRFREAHAEENAQDAEIERRIELETKAEKHIQKLLLLGAGESGRSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGF+EAELKSYI V+HANVYQTIKVL DGSKELAQN+ DS K+V+S+EN++IG+KL
Sbjct: 61  LLFQTGFNEAELKSYIPVVHANVYQTIKVLQDGSKELAQNDFDSSKYVISNENQDIGQKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGG L YPRLTKELA++IET+W D AIQETYA GNELQ+PDCA+YFMENL+RLSDANY
Sbjct: 121 SEIGGTLVYPRLTKELAQEIETMWEDAAIQETYARGNELQVPDCAHYFMENLERLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTK+D LYARVRTTGVVEIQFSPVGE+K+SGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 VPTKEDFLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFC+AISEYDQTL+EDE KNRMMETKELF+WVL+QPCFE
Sbjct: 241 IFCSAISEYDQTLYEDENKNRMMETKELFEWVLRQPCFE 279

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Glycine max (taxid: 3847)

>sp|Q0DJ33|GPA1_ORYSJ Guanine nucleotide-binding protein alpha-1 subunit OS=Oryza sativa subsp. japonica GN=GPA1 PE=1 SV=2

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/279 (77%), Positives = 248/279 (88%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG  CS++   + A++ +NA++A+I+RRI QETKAE+HI KLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGSSCSRSHSLSEAETTKNAKSADIDRRILQETKAEQHIHKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAEL+SY SVIHANVYQTIK+LY+G+KEL+Q E+DS K+V+S +N+EIGEKL
Sbjct: 61  LLFQTGFDEAELRSYTSVIHANVYQTIKILYEGAKELSQVESDSSKYVISPDNQEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           S+I GRLDYP L KEL  D++ LW DPAIQETY  G+ LQLPDCA YFMENL RL++A Y
Sbjct: 121 SDIDGRLDYPLLNKELVLDVKRLWQDPAIQETYLRGSILQLPDCAQYFMENLDRLAEAGY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTK+DVLYARVRT GVV+IQFSPVGE+K+ GEVYRL+DVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 VPTKEDVLYARVRTNGVVQIQFSPVGENKRGGEVYRLYDVGGQRNERRKWIHLFEGVNAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQ LFEDE KNRMMETKELFDWVLKQ CFE
Sbjct: 241 IFCAAISEYDQMLFEDETKNRMMETKELFDWVLKQRCFE 279

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
255550203	392	GTP-binding protein (p) alpha subunit, g	0.841	0.732	0.878	1e-148
359476282	392	PREDICTED: guanine nucleotide-binding pr	0.841	0.732	0.864	1e-147
194321202	392	G protein alpha subunit [Gossypium hirsu	0.841	0.732	0.864	1e-146
114050525	384	G protein alpha subunit [Phaseolus lunat	0.818	0.726	0.885	1e-145
449447183	392	PREDICTED: guanine nucleotide-binding pr	0.841	0.732	0.864	1e-145
157674593	384	hetrotrimeric G protein alpha subunit [P	0.818	0.726	0.881	1e-145
224141689	384	predicted protein [Populus trichocarpa]	0.818	0.726	0.878	1e-144
356552380	384	PREDICTED: guanine nucleotide-binding pr	0.818	0.726	0.874	1e-144
1346103	384	RecName: Full=Guanine nucleotide-binding	0.818	0.726	0.892	1e-144
18032048	392	G protein alpha subunit 3 [Solanum tuber	0.841	0.732	0.836	1e-144

>gi|255550203|ref|XP_002516152.1| GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis] gi|223544638|gb|EEF46154.1| GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/287 (87%), Positives = 272/287 (94%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           MLS ++ NMG LCSK RRYN AD+EENAQ AEIERRIEQETKAEKHIQKLLLLGAG+SGK
Sbjct: 1   MLSSVVHNMGSLCSKQRRYNEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGDSGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQ+GFDE+ELKSYI VIHAN+YQTIK+L+DGSKELAQNE DS K+V+SSE
Sbjct: 61  STIFKQIKLLFQSGFDESELKSYIPVIHANIYQTIKILHDGSKELAQNEADSSKYVISSE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
           NK+IGEKLSEIGGRLDYP LTKELA++IETLW D AIQETY  GNELQ+PDCA+YFMENL
Sbjct: 121 NKDIGEKLSEIGGRLDYPCLTKELAKEIETLWKDDAIQETYGRGNELQVPDCAHYFMENL 180

Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
           QRLSDANYVPTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 QRLSDANYVPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           LFEGV+AVIFCAAISEYDQTLFEDE KNRMMETKELF+WVLKQPCFE
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFE 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476282|ref|XP_002281862.2| PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Vitis vinifera]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/287 (86%), Positives = 273/287 (95%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           MLSI+IE MG +CS+++ Y+ AD+EENAQ AEIERRIEQETKAEKHIQKLLLLGAGESGK
Sbjct: 1   MLSIVIERMGSICSRHKHYHEADAEENAQAAEIERRIEQETKAEKHIQKLLLLGAGESGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQTGFDEAELKSYISV+HANVYQTIKVLYDGS+ELAQN TDS K+ +S E
Sbjct: 61  STIFKQIKLLFQTGFDEAELKSYISVVHANVYQTIKVLYDGSRELAQNTTDSSKYALSIE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
           NK+IGEKLSEIGGRLDYPRLT+ELA +IETLW D AIQETY+ GNELQ+PDCA+YFM+NL
Sbjct: 121 NKDIGEKLSEIGGRLDYPRLTRELANEIETLWKDAAIQETYSRGNELQVPDCAHYFMDNL 180

Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
           +RLSDANYVPTK+DVLYAR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 ERLSDANYVPTKEDVLYARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           LFEGV+AVIFCAAISEYDQTLFEDE KNRMMETKELF+WVLKQPCF+
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFQ 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194321202|gb|ACF48819.1| G protein alpha subunit [Gossypium hirsutum]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/287 (86%), Positives = 267/287 (93%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           ML  ++ENMGLLCSKN RY  AD+EENAQ AEI+RRIEQE KAEKHIQKLLLLGAGESGK
Sbjct: 1   MLITVLENMGLLCSKNHRYTEADAEENAQAAEIDRRIEQERKAEKHIQKLLLLGAGESGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQTGFDE ELKSYISVIHAN+YQTIK+LYDGSKE AQN+ DS K+V+SSE
Sbjct: 61  STIFKQIKLLFQTGFDEDELKSYISVIHANIYQTIKILYDGSKEFAQNDADSSKYVLSSE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
            K IGEKLSEIG RLDYPRL +ELA++IETLW D AIQETYA GNELQ+PDC +YFMENL
Sbjct: 121 IKVIGEKLSEIGSRLDYPRLNRELAQEIETLWKDSAIQETYARGNELQVPDCTHYFMENL 180

Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
           QRLSDANY+PTK+DVLYARVRT GVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 QRLSDANYIPTKEDVLYARVRTAGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           LFEGV+AVIFCAAISEYDQTLFEDEQKNRM+ETKELFDWVLKQPCFE
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMVETKELFDWVLKQPCFE 287

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114050525|dbj|BAF30964.1| G protein alpha subunit [Phaseolus lunatus] gi|114050529|dbj|BAF30966.1| G protein alpha subunit [Phaseolus lunatus]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/279 (88%), Positives = 264/279 (94%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS+NRRYN AD+EENAQTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRNRRYNDADAEENAQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ VIHANVYQTIK+L+DGSKE AQN+ D  K+V+S  NKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDADFSKYVISDVNKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYP LTKELA++IE LW DPAIQETYA G+ELQ+PDC +YFMENLQRLSDANY
Sbjct: 121 SEIGGRLDYPHLTKELAQEIENLWKDPAIQETYARGSELQIPDCTDYFMENLQRLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE +NRMMETKELF+WVLKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDENRNRMMETKELFEWVLKQPCFE 279

Source: Phaseolus lunatus

Species: Phaseolus lunatus

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447183|ref|XP_004141348.1| PREDICTED: guanine nucleotide-binding protein alpha-1 subunit-like [Cucumis sativus] gi|449486722|ref|XP_004157381.1| PREDICTED: guanine nucleotide-binding protein alpha-1 subunit-like [Cucumis sativus]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/287 (86%), Positives = 267/287 (93%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           MLS L  NMGLLCS+NR YN  D+EE  Q AEIERRIEQET+AEKHIQKLLLLGAGESGK
Sbjct: 1   MLSHLSRNMGLLCSRNRHYNEQDAEEKTQAAEIERRIEQETEAEKHIQKLLLLGAGESGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQTGFDEAELKSYI VIHANVYQTIKVL+DGSKELAQN+ +  K+V+SSE
Sbjct: 61  STIFKQIKLLFQTGFDEAELKSYIPVIHANVYQTIKVLHDGSKELAQNDKEFTKYVLSSE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
           NK+IGEKLS+IGGRLDYPRLT+E A+DIETLW D AIQETY+ GNELQ+PDC  YFMENL
Sbjct: 121 NKDIGEKLSDIGGRLDYPRLTRERAQDIETLWKDAAIQETYSRGNELQVPDCTQYFMENL 180

Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
           QRLSDANY+PTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 QRLSDANYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           LFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELF+WVLKQ CFE
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFEWVLKQECFE 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157674593|gb|ABV60388.1| hetrotrimeric G protein alpha subunit [Phaseolus vulgaris]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/279 (88%), Positives = 265/279 (94%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS+NRRYN AD+EENAQTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRNRRYNDADAEENAQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ VIHANVYQTIK+L+DGSKE AQN+ D  K+V+S+ NKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDADFSKYVISNVNKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYP LTKELA++IE LW DPAIQETYA G+ELQ+PDC +YFM+NLQRLSDANY
Sbjct: 121 SEIGGRLDYPHLTKELAQEIENLWKDPAIQETYARGSELQIPDCTDYFMDNLQRLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE +NRMMETKELF+WVLKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDENRNRMMETKELFEWVLKQPCFE 279

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141689|ref|XP_002324197.1| predicted protein [Populus trichocarpa] gi|222865631|gb|EEF02762.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/279 (87%), Positives = 266/279 (95%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCSK  RYN AD+EENAQ AEIERRIEQETK E+HIQK+LLLGAG+SGKSTIFKQIK
Sbjct: 1   MGLLCSKRHRYNEADTEENAQAAEIERRIEQETKVEQHIQKILLLGAGDSGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQ+GFDEAELKSYISVIHANVYQTIKVL+DGSKELAQNETDS+K+V+S+ENK+IG+KL
Sbjct: 61  LLFQSGFDEAELKSYISVIHANVYQTIKVLHDGSKELAQNETDSLKYVISNENKDIGQKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLD+P LTKELA++IETLW D AIQETYA GNELQ+PDC  YFMENLQRLSDANY
Sbjct: 121 SEIGGRLDHPSLTKELAQEIETLWRDAAIQETYARGNELQVPDCTPYFMENLQRLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           +PTKDDVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct: 181 IPTKDDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE KNRM+ TKELF+WVLKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDENKNRMIGTKELFEWVLKQPCFE 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552380|ref|XP_003544546.1| PREDICTED: guanine nucleotide-binding protein alpha-2 subunit-like [Glycine max]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 244/279 (87%), Positives = 264/279 (94%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCS+NRRYN AD+EE+AQTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSRNRRYNDADAEESAQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY+ VIHANVYQTIK+L+DGSKE AQN+ DS K+V+S+ENKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYLPVIHANVYQTIKLLHDGSKEFAQNDVDSSKYVISNENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYP LTKELA++IE LW DPAIQETYA G+ELQ+PDC +YFMENLQRLSD NY
Sbjct: 121 SEIGGRLDYPYLTKELAQEIENLWKDPAIQETYARGSELQIPDCTDYFMENLQRLSDTNY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTK+DVLYARVRT+GVVEIQFSPVGE KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKEDVLYARVRTSGVVEIQFSPVGESKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE +NRM ETKELF+W+LKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDENRNRMTETKELFEWILKQPCFE 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1346103|sp|P49082.1|GPA1_LOTJA RecName: Full=Guanine nucleotide-binding protein alpha-1 subunit; Short=GP-alpha-1 gi|499078|emb|CAA54467.1| GPA1 [Lotus japonicus]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/279 (89%), Positives = 261/279 (93%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MGLLCSKNRRYN AD+EEN QTAEIERRIE ETKAEKHIQKLLLLGAGESGKSTIFKQIK
Sbjct: 1   MGLLCSKNRRYNDADTEENTQTAEIERRIELETKAEKHIQKLLLLGAGESGKSTIFKQIK 60

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           LLFQTGFDEAELKSY  VIHANVYQTIK+L+DG+KELAQN+ D  K+V+S ENKEIGEKL
Sbjct: 61  LLFQTGFDEAELKSYQPVIHANVYQTIKLLHDGAKELAQNDVDFSKYVISDENKEIGEKL 120

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
           SEIGGRLDYP LTKELA +IE LW D AIQETYA GNELQ+PDC +YFMENL RLSDANY
Sbjct: 121 SEIGGRLDYPCLTKELALEIENLWKDAAIQETYARGNELQVPDCTHYFMENLHRLSDANY 180

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           VPTKDDVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV
Sbjct: 181 VPTKDDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 240

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           IFCAAISEYDQTLFEDE KNRMMETKELF+WVLKQPCFE
Sbjct: 241 IFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFE 279

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18032048|gb|AAL51157.1| G protein alpha subunit 3 [Solanum tuberosum]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/287 (83%), Positives = 271/287 (94%)

Query: 1   MLSILIENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGK 60
           MLS+++ENMG LCS+N+ Y+ AD EEN QTAEIERRIEQETKA+KHIQKLLLLGAG+SGK
Sbjct: 1   MLSVVLENMGSLCSRNKHYSQADDEENTQTAEIERRIEQETKADKHIQKLLLLGAGDSGK 60

Query: 61  STIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE 120
           STIFKQIKLLFQTGFDEAELK+YI VIHANVYQTIK+L+DGSKELAQNE ++ K+++S+E
Sbjct: 61  STIFKQIKLLFQTGFDEAELKNYIPVIHANVYQTIKILHDGSKELAQNELEASKYLLSAE 120

Query: 121 NKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
           NKEIGEKLSEIGGRLDYPRLTK+L +DIE LW DPAIQET   GNELQ+PDCA+YFMENL
Sbjct: 121 NKEIGEKLSEIGGRLDYPRLTKDLVQDIEALWKDPAIQETLLRGNELQVPDCAHYFMENL 180

Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
           +R SD +Y+PTK+DVL+AR+RTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIH
Sbjct: 181 ERFSDIHYIPTKEDVLFARIRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIH 240

Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           LFEGV+AVIFCAAISEYDQTLFEDE+KNRMMETKELF+WVLKQPCFE
Sbjct: 241 LFEGVTAVIFCAAISEYDQTLFEDERKNRMMETKELFEWVLKQPCFE 287

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2005529	383	GP ALPHA 1 "AT2G26300" [Arabid	0.815	0.725	0.845	3.7e-126
UNIPROTKB|Q0DJ33	380	GPA1 "Guanine nucleotide-bindi	0.818	0.734	0.770	3.1e-115
UNIPROTKB|P0C7Q4	354	GNAT3 "Guanine nucleotide-bind	0.753	0.725	0.414	3.5e-52
UNIPROTKB|F1SB91	358	GNAT3 "Uncharacterized protein	0.826	0.787	0.390	5.6e-52
MGI|MGI:3588268	354	Gnat3 "guanine nucleotide bind	0.753	0.725	0.414	2.4e-51
WB|WBGene00003850	356	odr-3 [Caenorhabditis elegans	0.736	0.705	0.425	1.1e-50
UNIPROTKB|Q18434	356	odr-3 "Guanine nucleotide-bind	0.736	0.705	0.425	1.1e-50
UNIPROTKB|A8MTJ3	354	GNAT3 "Guanine nucleotide-bind	0.753	0.725	0.403	1.7e-50
DICTYBASE|DDB_G0283349	356	gpaA "G protein alpha subunit	0.777	0.744	0.413	4.6e-50
RGD|727817	354	Gnat3 "guanine nucleotide bind	0.753	0.725	0.4	4.6e-50

TAIR|locus:2005529 GP ALPHA 1 "AT2G26300" [Arabidopsis thaliana (taxid:3702)]

 Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
 Identities = 236/279 (84%), Positives = 259/279 (92%)

Query:     9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
             MGLLCS++R ++  D++EN Q AEIERRIEQE KAEKHI+KLLLLGAGESGKSTIFKQIK
Sbjct:     1 MGLLCSRSR-HHTEDTDENTQAAEIERRIEQEAKAEKHIRKLLLLGAGESGKSTIFKQIK 59

Query:    69 LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
             LLFQTGFDE ELKSY+ VIHANVYQTIK+L+DG+KE AQNETDS K+++SSE+  IGEKL
Sbjct:    60 LLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEKL 119

Query:   129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
             SEIGGRLDYPRLTK++AE IETLW DPAIQET A GNELQ+PDC  Y MENL+RLSD NY
Sbjct:   120 SEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINY 179

Query:   189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
             +PTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRLFDVGGQRNERRKWIHLFEGV+AV
Sbjct:   180 IPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAV 239

Query:   249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
             IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE
Sbjct:   240 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 278

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IEA;ISS;IBA

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IDA;TAS;IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP;TAS

GO:0016247 "channel regulator activity" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IMP

GO:0009845 "seed germination" evidence=IEP;IMP

GO:0001789 "G-protein coupled receptor signaling pathway, coupled to S1P second messenger" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0008219 "cell death" evidence=RCA;IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP;TAS

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0006571 "tyrosine biosynthetic process" evidence=IMP

GO:0009094 "L-phenylalanine biosynthetic process" evidence=IMP

GO:0010244 "response to low fluence blue light stimulus by blue low-fluence system" evidence=IMP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IEP

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009749 "response to glucose stimulus" evidence=IGI;RCA

GO:0005095 "GTPase inhibitor activity" evidence=IDA

GO:0051020 "GTPase binding" evidence=IPI

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

UNIPROTKB|Q0DJ33 GPA1 "Guanine nucleotide-binding protein alpha-1 subunit" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 215/279 (77%), Positives = 248/279 (88%)

Query:     9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
             MG  CS++   + A++ +NA++A+I+RRI QETKAE+HI KLLLLGAGESGKSTIFKQIK
Sbjct:     1 MGSSCSRSHSLSEAETTKNAKSADIDRRILQETKAEQHIHKLLLLGAGESGKSTIFKQIK 60

Query:    69 LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
             LLFQTGFDEAEL+SY SVIHANVYQTIK+LY+G+KEL+Q E+DS K+V+S +N+EIGEKL
Sbjct:    61 LLFQTGFDEAELRSYTSVIHANVYQTIKILYEGAKELSQVESDSSKYVISPDNQEIGEKL 120

Query:   129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
             S+I GRLDYP L KEL  D++ LW DPAIQETY  G+ LQLPDCA YFMENL RL++A Y
Sbjct:   121 SDIDGRLDYPLLNKELVLDVKRLWQDPAIQETYLRGSILQLPDCAQYFMENLDRLAEAGY 180

Query:   189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
             VPTK+DVLYARVRT GVV+IQFSPVGE+K+ GEVYRL+DVGGQRNERRKWIHLFEGV+AV
Sbjct:   181 VPTKEDVLYARVRTNGVVQIQFSPVGENKRGGEVYRLYDVGGQRNERRKWIHLFEGVNAV 240

Query:   249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
             IFCAAISEYDQ LFEDE KNRMMETKELFDWVLKQ CFE
Sbjct:   241 IFCAAISEYDQMLFEDETKNRMMETKELFDWVLKQRCFE 279

GO:0001664 "G-protein coupled receptor binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005095 "GTPase inhibitor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0016247 "channel regulator activity" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

UNIPROTKB|P0C7Q4 GNAT3 "Guanine nucleotide-binding protein G(t) subunit alpha-3" [Bos taurus (taxid:9913)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 114/275 (41%), Positives = 176/275 (64%)

Query:    21 AADSEENAQTA-EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
             +++S+E+A+ + E+E++++++ + +    KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct:     6 SSESKESAKRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSEQE 65

Query:    80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
                + +VI++N  Q+I  +    K +A  E D     V+  + E  ++L  +   L+   
Sbjct:    66 CMEFKAVIYSNTLQSILAIV---KAMATLEID----YVNPRSAEDQQQLCAMANTLEDGS 118

Query:   140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
             +T ELAE I+ LW DP +Q  +   +E QL D A Y++ +L R++   YVP + DVL++R
Sbjct:   119 MTPELAEIIKRLWRDPGVQACFERASEYQLNDSAAYYLNDLDRIAAPGYVPNEQDVLHSR 178

Query:   200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
             V+TTG++E QFS    H      +R+FDVGGQR+ER+KWIH FEGV+ +IFCAA+S YD 
Sbjct:   179 VKTTGIIETQFSFKDLH------FRMFDVGGQRSERKKWIHCFEGVTCIIFCAALSAYDM 232

Query:   260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATS 294
              L EDE+ NRM E+  LF+ +    C   +F  TS
Sbjct:   233 VLVEDEEVNRMHESLHLFNSI----CNHKYFATTS 263

GO:0050917 "sensory perception of umami taste" evidence=ISS

GO:0050916 "sensory perception of sweet taste" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0001917 "photoreceptor inner segment" evidence=ISS

GO:0001750 "photoreceptor outer segment" evidence=ISS

GO:0001664 "G-protein coupled receptor binding" evidence=ISS

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1SB91 GNAT3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 119/305 (39%), Positives = 184/305 (60%)

Query:    21 AADSEENAQTA-EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
             +++S+E+A+ + E+E++++++ + +    KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct:     6 SSESKESAKRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSEQE 65

Query:    80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
                + +VI++N  Q+I  +    K +A    D      +  + E   +L  +   L+  R
Sbjct:    66 CMEFKAVIYSNTLQSILAIV---KAMATLGID----YANPRSAEDQRQLHVMANTLEDGR 118

Query:   140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
             LT ELAE I+ LW DP IQ  +   +E QL D A Y++ +L R++   YVP + DVL++R
Sbjct:   119 LTPELAEVIKRLWRDPGIQACFERASEYQLNDSAAYYLNDLDRIAAPGYVPNEQDVLHSR 178

Query:   200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
             V+TTG++E QFS    H      +R+FDVGGQR+ER+KWIH FEGV+ +IFCA++S YD 
Sbjct:   179 VKTTGIIETQFSFKDLH------FRMFDVGGQRSERKKWIHCFEGVTCIIFCASLSAYDM 232

Query:   260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAF-----VACEHVSGMHWQT 314
              L EDE+ NRM E+  LF+ +    C   +F  TS +   +F      AC  +    W  
Sbjct:   233 VLVEDEEVNRMHESLHLFNSI----CNHKYFATTSIVRFFSFNSIAVKACVEIHFSIWIL 288

Query:   315 VGNFF 319
             + N +
Sbjct:   289 MCNIY 293

GO:0050917 "sensory perception of umami taste" evidence=IEA

GO:0050916 "sensory perception of sweet taste" evidence=IEA

GO:0050913 "sensory perception of bitter taste" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA

MGI|MGI:3588268 Gnat3 "guanine nucleotide binding protein, alpha transducing 3" [Mus musculus (taxid:10090)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 114/275 (41%), Positives = 176/275 (64%)

Query:    21 AADSEENAQTA-EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
             +++S+E+A+ + E+E++++++ + +    KLLLLGAGESGKSTI KQ+K++ + G+ + E
Sbjct:     6 SSESKESARRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSKQE 65

Query:    80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
                + +VI++N  Q+I  +    K +A    D     V+  ++E  E+L  +   L+   
Sbjct:    66 CMEFKAVIYSNTLQSILAIV---KAMATLGID----YVNPRSREDQEQLHSMANTLEDGD 118

Query:   140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
             +T +LAE I+ LW DP IQ  +   +E QL D A Y++ +L RL+   YVP + DVL++R
Sbjct:   119 MTPQLAEIIKRLWGDPGIQACFERASEYQLNDSAAYYLNDLDRLTAPGYVPNEQDVLHSR 178

Query:   200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
             V+TTG++E QFS     K     +R+FDVGGQR+ER+KWIH FEGV+ +IFCAA+S YD 
Sbjct:   179 VKTTGIIETQFS----FKDLN--FRMFDVGGQRSERKKWIHCFEGVTCIIFCAALSAYDM 232

Query:   260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATS 294
              L EDE+ NRM E+  LF+ +    C   +F  TS
Sbjct:   233 VLVEDEEVNRMHESLHLFNSI----CNHKYFATTS 263

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0001669 "acrosomal vesicle" evidence=ISO

GO:0001750 "photoreceptor outer segment" evidence=IBA

GO:0001917 "photoreceptor inner segment" evidence=IBA

GO:0003924 "GTPase activity" evidence=ISO;IDA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005525 "GTP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005834 "heterotrimeric G-protein complex" evidence=IPI

GO:0005930 "axoneme" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0016056 "rhodopsin mediated signaling pathway" evidence=IBA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0043234 "protein complex" evidence=ISO

GO:0044444 "cytoplasmic part" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=IMP;IDA

GO:0050913 "sensory perception of bitter taste" evidence=IMP

GO:0050916 "sensory perception of sweet taste" evidence=IMP

GO:0050917 "sensory perception of umami taste" evidence=IMP

WB|WBGene00003850 odr-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 120/282 (42%), Positives = 176/282 (62%)

Query:    23 DSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKS 82
             +SE NA+  EIE+++  + +A   I KLLLLGAGE GKST+ KQ+++L   GF E E+  
Sbjct:     9 NSEGNARNKEIEKQLNADKRAGSSIVKLLLLGAGECGKSTVLKQMQILHSNGFTEEEVNE 68

Query:    83 YISVIHANVYQ---TIKVLYDGSKELA-QN-ETDSMKFVVSS--ENKEIGEKLSEIGGRL 135
               ++++ N      TI    DG   L  +N + ++ K +V    EN E GE L+E     
Sbjct:    69 KRAIVYNNTVSAMCTILRAMDGVLHLPLENGQKEAEKAIVMKVQENGEEGEALTE----- 123

Query:   136 DYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDV 195
                    E+++ I++LWADP +++ +   +E QLPD A YF++N QR+S+  Y P   D+
Sbjct:   124 -------EVSKAIQSLWADPGVKKAFEMRSEYQLPDSAKYFLDNCQRISEPGYRPNDQDI 176

Query:   196 LYARVRTTGVVEIQFSPVGEHKKSGEV-YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAI 254
             LY+RV TTGVVE++F       K  E+ +R+FDVGGQR+ERRKWIH F+ V ++IF  AI
Sbjct:   177 LYSRVATTGVVEVKF-------KIKELDFRVFDVGGQRSERRKWIHCFDNVESIIFITAI 229

Query:   255 SEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
             SEYDQ LFEDE  NRM+E+ +LF+ +    C   +F +T+ +
Sbjct:   230 SEYDQVLFEDETTNRMIESMQLFNSI----CNSTWFLSTAMI 267

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006972 "hyperosmotic response" evidence=IGI;IMP

GO:0042048 "olfactory behavior" evidence=IGI;IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0031513 "nonmotile primary cilium" evidence=IDA

UNIPROTKB|Q18434 odr-3 "Guanine nucleotide-binding protein alpha-17 subunit" [Caenorhabditis elegans (taxid:6239)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 120/282 (42%), Positives = 176/282 (62%)

Query:    23 DSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKS 82
             +SE NA+  EIE+++  + +A   I KLLLLGAGE GKST+ KQ+++L   GF E E+  
Sbjct:     9 NSEGNARNKEIEKQLNADKRAGSSIVKLLLLGAGECGKSTVLKQMQILHSNGFTEEEVNE 68

Query:    83 YISVIHANVYQ---TIKVLYDGSKELA-QN-ETDSMKFVVSS--ENKEIGEKLSEIGGRL 135
               ++++ N      TI    DG   L  +N + ++ K +V    EN E GE L+E     
Sbjct:    69 KRAIVYNNTVSAMCTILRAMDGVLHLPLENGQKEAEKAIVMKVQENGEEGEALTE----- 123

Query:   136 DYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDV 195
                    E+++ I++LWADP +++ +   +E QLPD A YF++N QR+S+  Y P   D+
Sbjct:   124 -------EVSKAIQSLWADPGVKKAFEMRSEYQLPDSAKYFLDNCQRISEPGYRPNDQDI 176

Query:   196 LYARVRTTGVVEIQFSPVGEHKKSGEV-YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAI 254
             LY+RV TTGVVE++F       K  E+ +R+FDVGGQR+ERRKWIH F+ V ++IF  AI
Sbjct:   177 LYSRVATTGVVEVKF-------KIKELDFRVFDVGGQRSERRKWIHCFDNVESIIFITAI 229

Query:   255 SEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
             SEYDQ LFEDE  NRM+E+ +LF+ +    C   +F +T+ +
Sbjct:   230 SEYDQVLFEDETTNRMIESMQLFNSI----CNSTWFLSTAMI 267

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0003924 "GTPase activity" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

UNIPROTKB|A8MTJ3 GNAT3 "Guanine nucleotide-binding protein G(t) subunit alpha-3" [Homo sapiens (taxid:9606)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 111/275 (40%), Positives = 173/275 (62%)

Query:    21 AADSEENAQTA-EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
             +++S+E+A+ + E+E++++++ + +    KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct:     6 SSESKESAKRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSEQE 65

Query:    80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
                + +VI++N  Q+I  +      L  +        V+  + E   +L  +   L+   
Sbjct:    66 CMEFKAVIYSNTLQSILAIVKAMTTLGID-------YVNPRSAEDQRQLYAMANTLEDGG 118

Query:   140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
             +T +LAE I+ LW DP IQ  +   +E QL D A Y++ +L R++ + YVP + DVL++R
Sbjct:   119 MTPQLAEVIKRLWRDPGIQACFERASEYQLNDSAAYYLNDLDRITASGYVPNEQDVLHSR 178

Query:   200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
             V+TTG++E QFS    H      +R+FDVGGQR+ER+KWIH FEGV+ +IFCAA+S YD 
Sbjct:   179 VKTTGIIETQFSFKDLH------FRMFDVGGQRSERKKWIHCFEGVTCIIFCAALSAYDM 232

Query:   260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATS 294
              L EDE+ NRM E+  LF+ +    C   +F  TS
Sbjct:   233 VLVEDEEVNRMHESLHLFNSI----CNHKYFSTTS 263

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0001750 "photoreceptor outer segment" evidence=IBA

GO:0001917 "photoreceptor inner segment" evidence=IBA

GO:0003924 "GTPase activity" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0050916 "sensory perception of sweet taste" evidence=IBA

GO:0050917 "sensory perception of umami taste" evidence=IBA

GO:0043234 "protein complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=TAS

DICTYBASE|DDB_G0283349 gpaA "G protein alpha subunit Galpha1" [Dictyostelium discoideum (taxid:44689)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 120/290 (41%), Positives = 178/290 (61%)

Query:     9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQ-ETKAEKHIQKLLLLGAGESGKSTIFKQI 67
             MG +C K         EE      I   ++Q  +K E  I KLLLLGAGESGKSTI KQ+
Sbjct:     1 MGNICGKPE---LGSPEEIKANQHINSLLKQARSKLEGEI-KLLLLGAGESGKSTIAKQM 56

Query:    68 KLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEK 127
             K++   GF++ E  SY ++I+ N   +++VL + ++EL        K  +S  NKE   +
Sbjct:    57 KIIHLNGFNDEEKSSYKTIIYNNTVGSMRVLVNAAEEL--------KIGISENNKEAASR 108

Query:   128 LS-EIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDA 186
             +S ++G   +   LT ELA+DI+ LWADP IQ T+   +E QL D A Y+ +++ R+S  
Sbjct:   109 ISNDLGDHFNGV-LTAELAQDIKALWADPGIQNTFQRSSEFQLNDSAAYYFDSIDRISQP 167

Query:   187 NYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS 246
              Y+P+++DVL +R +TTG++E  F    E + S   +R+ DVGGQR+ER+KW+H F+ V+
Sbjct:   168 LYLPSENDVLRSRTKTTGIIETVF----EIQNS--TFRMVDVGGQRSERKKWMHCFQEVT 221

Query:   247 AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
             AVIFC A+SEYD  L+ED+  NRM E+ +LF    K+ C   +F  T+ +
Sbjct:   222 AVIFCVALSEYDLKLYEDDTTNRMQESLKLF----KEICNTKWFANTAMI 267

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IBA

GO:0006184 "GTP catabolic process" evidence=IEA;IDA

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;IMP

GO:0007165 "signal transduction" evidence=IEA;IMP

GO:0004871 "signal transducer activity" evidence=IEA;IMP

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA;IBA

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|727817 Gnat3 "guanine nucleotide binding protein, alpha transducing 3" [Rattus norvegicus (taxid:10116)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 110/275 (40%), Positives = 173/275 (62%)

Query:    21 AADSEENAQTA-EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
             +++S+E+A+ + E+E++++++ + +    KLLLLGAGESGKSTI KQ+K++ + G+ + E
Sbjct:     6 SSESKESAKRSKELEKKLQEDAERDARTVKLLLLGAGESGKSTIVKQMKIIHKNGYSKQE 65

Query:    80 LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
                + +V+++N  Q+I  +      L  +        V+  ++E  + L  +   L+   
Sbjct:    66 CMEFKAVVYSNTLQSILAIVKAMTTLGID-------YVNPRSREDQQLLLSMANTLEDGD 118

Query:   140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
             +T +LAE I+ LW DP IQ  +   +E QL D A Y++ +L RL+   YVP + DVL++R
Sbjct:   119 MTPQLAEIIKRLWGDPGIQACFERASEYQLNDSAAYYLNDLDRLTAPGYVPNEQDVLHSR 178

Query:   200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
             V+TTG++E QFS     K     +R+FDVGGQR+ER+KWIH FEGV+ +IFCAA+S YD 
Sbjct:   179 VKTTGIIETQFS----FKDLN--FRMFDVGGQRSERKKWIHCFEGVTCIIFCAALSAYDM 232

Query:   260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATS 294
              L EDE+ NRM E+  LF+ +    C   +F  TS
Sbjct:   233 VLVEDEEVNRMHESLHLFNSI----CNHKYFATTS 263

GO:0001580 "detection of chemical stimulus involved in sensory perception of bitter taste" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

GO:0001669 "acrosomal vesicle" evidence=IDA

GO:0001750 "photoreceptor outer segment" evidence=IBA

GO:0001917 "photoreceptor inner segment" evidence=IBA

GO:0003924 "GTPase activity" evidence=IEA;ISO;IDA

GO:0004871 "signal transducer activity" evidence=IEA;IBA

GO:0005525 "GTP binding" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISO;IBA

GO:0005930 "axoneme" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IEA;IBA

GO:0007601 "visual perception" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA;IBA

GO:0035094 "response to nicotine" evidence=IEP

GO:0043234 "protein complex" evidence=ISO

GO:0044444 "cytoplasmic part" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050909 "sensory perception of taste" evidence=ISO

GO:0050913 "sensory perception of bitter taste" evidence=ISO

GO:0050916 "sensory perception of sweet taste" evidence=ISO;IBA

GO:0050917 "sensory perception of umami taste" evidence=ISO;IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49082	GPA1_LOTJA	No assigned EC number	0.8924	0.8181	0.7265	N/A	no
P26981	GPA1_SOLLC	No assigned EC number	0.8351	0.8181	0.7265	N/A	no
P93564	GPA1_SOLTU	No assigned EC number	0.8422	0.8181	0.7265	N/A	no
O04278	GPA1_PEA	No assigned EC number	0.8637	0.8181	0.7265	N/A	no
O04279	GPA2_PEA	No assigned EC number	0.8494	0.8181	0.7265	N/A	no
Q40224	GPA1_LUPLU	No assigned EC number	0.8709	0.8181	0.7265	N/A	no
Q0DJ33	GPA1_ORYSJ	No assigned EC number	0.7706	0.8181	0.7342	yes	no
P18064	GPA1_ARATH	No assigned EC number	0.8458	0.8152	0.7258	yes	no
P93163	GPA2_SOYBN	No assigned EC number	0.8642	0.8181	0.7246	yes	no
A2Y3B5	GPA1_ORYSI	No assigned EC number	0.7706	0.8181	0.7342	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	1e-112
smart00275	342	smart00275, G_alpha, G protein alpha subunit	1e-107
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	1e-99
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	4e-05
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.004

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score =  328 bits (844), Expect = e-112
 Identities = 112/239 (46%), Positives = 152/239 (63%), Gaps = 13/239 (5%)

Query: 48  QKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQ 107
            KLLLLGAGESGKSTI KQ+K+L   GF + E + +  VI++N+ Q++K L    + L  
Sbjct: 1   VKLLLLGAGESGKSTILKQMKILHGNGFSDEERREFRPVIYSNILQSMKALLRAMETLNI 60

Query: 108 NETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNEL 167
              D        EN++  +K+  +  R +   L  ELAE I+ LW DP IQ  Y   NE 
Sbjct: 61  PYGDP-------ENEKDAKKILSLAPRAEEGPLPPELAEAIKRLWKDPGIQACYDRRNEY 113

Query: 168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFD 227
           QL D A YF++NL R+SD +Y+PT+ D+L +RV+TTG++E  FS +   K     +R+FD
Sbjct: 114 QLNDSAKYFLDNLDRISDPDYIPTEQDILRSRVKTTGIIETDFS-IKNLK-----FRMFD 167

Query: 228 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           VGGQR+ER+KWIH FE V+A+IF  A+SEYDQ L EDE  NRM E+ +LFD +     F
Sbjct: 168 VGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDESVNRMQESLKLFDSICNSRWF 226

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score =  315 bits (809), Expect = e-107
 Identities = 111/257 (43%), Positives = 159/257 (61%), Gaps = 15/257 (5%)

Query: 32  EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
           EIE+++E+E K +K   KLLLLGAGESGKSTI KQ+++L   GF + E + Y  +I++N+
Sbjct: 6   EIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNI 65

Query: 92  YQTIKVLYDGSKELAQN--ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIE 149
            +++K L D  +EL     + +S+  +     +      +E         L KE+A+ I+
Sbjct: 66  LESMKALVDAMEELNIPFEDPESILDIRIITEQFNKTDETENV-------LPKEIAKAIK 118

Query: 150 TLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQ 209
            LW D  IQE Y   NE QL D A+YF++N+ R+ D +YVPT+ D+L +RV TTG+ E  
Sbjct: 119 ALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDPDYVPTEQDILRSRVPTTGIQETA 178

Query: 210 FSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNR 269
           F            +R+FDVGGQR+ER+KWIH F+ V+A+IFC A+SEYDQ L EDE  NR
Sbjct: 179 FI------VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNR 232

Query: 270 MMETKELFDWVLKQPCF 286
           M E+  LF+ +     F
Sbjct: 233 MQESLNLFESICNSRWF 249

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score =  296 bits (761), Expect = 1e-99
 Identities = 115/244 (47%), Positives = 159/244 (65%), Gaps = 14/244 (5%)

Query: 47  IQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELA 106
             KLLLLGAGESGKSTI KQ+K+L   GF + E + Y +VI++N+ +++K L +  + L 
Sbjct: 2   EIKLLLLGAGESGKSTILKQMKILHGGGFSDEEREQYRAVIYSNIIRSLKTLLEALENLE 61

Query: 107 QNETDSMKFVVSSENKEIGEKLSEIGGRLDY---PRLTKELAEDIETLWADPAIQETYAH 163
              ++S       EN+EI +KL  I   L      R ++ELAEDI+ LW DP IQE Y  
Sbjct: 62  IESSNS-----KPENEEIAKKLKSILDSLLDVDETRFSEELAEDIKELWNDPGIQEVYNR 116

Query: 164 GNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVY 223
            NE QL D A YF++NL R++  +YVPT  D+L ARV+TTG++E +F      K     +
Sbjct: 117 SNEFQLSDSAKYFLDNLDRIASPDYVPTDQDILRARVKTTGIIETKFD-FKGLK-----F 170

Query: 224 RLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ 283
           RLFDVGGQR+ER+KWIH FE V+A+IF  ++SEYDQ L+ED+  NR+ E+  LF+ +   
Sbjct: 171 RLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESLNLFEEICNS 230

Query: 284 PCFE 287
           P F+
Sbjct: 231 PWFK 234

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 13/99 (13%)

Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFED--EQKNRMMETKELFDWVL- 281
           ++DVGGQ + R  W + F    AVIF   +   D+   E+  E+ + ++  +EL D  L 
Sbjct: 62  VWDVGGQESLRPLWRNYFPNTDAVIFV--VDSADRDRIEEAKEELHALLNEEELADAPLL 119

Query: 282 ----KQPCFEVFFCATSALHITAFVACEHVSGMHWQTVG 316
               KQ        A S   I   +    +    W+  G
Sbjct: 120 ILANKQDLPG----AMSEAEIRELLGLHELKDRPWEIQG 154

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284
           ++DVGGQ   R  W H +E    +IF   +   D        + R+ E K     +L + 
Sbjct: 47  VWDVGGQDKIRPLWKHYYENTDGLIFV--VDSSD--------RERIEEAKNELHKLLNEE 96

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 19/59 (32%), Positives = 32/59 (54%)

Query: 223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
           + ++DVGGQ   R  W H F+    +IF    ++ D+ +   ++ +RM+   EL D VL
Sbjct: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVL 121

Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
KOG0082	354	consensus G-protein alpha subunit (small G protein	100.0
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	100.0
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	100.0
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	100.0
KOG0099	379	consensus G protein subunit Galphas, small G prote	100.0
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	100.0
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.67
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.62
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.5
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.5
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.42
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.39
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.29
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.15
PLN00223	181	ADP-ribosylation factor; Provisional	99.07
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.01
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.98
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.95
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	98.93
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	98.9
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.86
PTZ00133	182	ADP-ribosylation factor; Provisional	98.84
smart00178	184	SAR Sar1p-like members of the Ras-family of small	98.8
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.74
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.73
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.73
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.72
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.71
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.71
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.7
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.69
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	98.68
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.67
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.66
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.65
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.65
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	98.65
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.63
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.63
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	98.62
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	98.62
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.62
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	98.59
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.58
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.57
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	98.55
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.54
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.54
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.53
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.53
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.52
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	98.51
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	98.47
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.41
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	98.41
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.41
COG1100	219	GTPase SAR1 and related small G proteins [General	98.35
PTZ00099	176	rab6; Provisional	98.32
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.29
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.26
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.26
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.15
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.13
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.12
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.08
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.07
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.07
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.04
cd04105	203	SR_beta Signal recognition particle receptor, beta	98.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	97.96
PTZ00369	189	Ras-like protein; Provisional	97.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	97.96
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	97.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	97.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	97.93
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	97.92
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	97.92
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	97.91
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	97.9
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	97.9
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	97.86
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	97.83
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	97.82
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	97.81
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	97.81
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	97.81
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	97.81
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.78
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	97.77
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	97.76
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	97.75
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	97.73
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	97.69
PLN00023	334	GTP-binding protein; Provisional	97.68
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	97.68
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	97.67
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	97.66
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	97.66
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	97.66
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	97.65
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	97.62
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	97.61
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	97.59
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	97.59
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	97.55
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	97.55
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	97.54
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	97.52
PF09439	181	SRPRB: Signal recognition particle receptor beta s	97.51
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	97.5
PLN03118	211	Rab family protein; Provisional	97.5
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	97.46
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	97.44
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	97.44
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.39
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	97.36
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	97.35
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	97.34
PLN03108	210	Rab family protein; Provisional	97.34
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	97.32
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	97.3
KOG0090	238	consensus Signal recognition particle receptor, be	97.28
PLN03110	216	Rab GTPase; Provisional	97.26
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	97.21
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	97.19
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	97.17
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	97.17
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.15
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	97.13
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	97.06
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	97.04
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	96.89
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	96.86
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	96.86
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	96.82
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	96.82
cd00881	189	GTP_translation_factor GTP translation factor fami	96.8
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	96.75
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	96.7
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	96.69
PRK12299	335	obgE GTPase CgtA; Reviewed	96.66
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	96.64
cd01881	176	Obg_like The Obg-like subfamily consists of five w	96.63
PRK08118	167	topology modulation protein; Reviewed	96.61
KOG0395	196	consensus Ras-related GTPase [General function pre	96.6
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	96.53
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.47
PRK04213	201	GTP-binding protein; Provisional	96.45
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.45
PRK07261	171	topology modulation protein; Provisional	96.44
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	96.44
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	96.37
COG2229	187	Predicted GTPase [General function prediction only	96.29
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.23
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	96.22
PRK10218	607	GTP-binding protein; Provisional	96.19
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	96.19
KOG1673	205	consensus Ras GTPases [General function prediction	96.1
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	96.07
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	96.07
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	96.05
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	95.98
PRK06217	183	hypothetical protein; Validated	95.97
PRK03003	472	GTP-binding protein Der; Reviewed	95.92
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	95.92
PRK00741	526	prfC peptide chain release factor 3; Provisional	95.91
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	95.91
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	95.85
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.84
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	95.75
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.73
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	95.71
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	95.7
PRK13351	687	elongation factor G; Reviewed	95.68
PRK05306	787	infB translation initiation factor IF-2; Validated	95.65
PRK05433	600	GTP-binding protein LepA; Provisional	95.63
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	95.63
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	95.59
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	95.59
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	95.58
PRK12296	500	obgE GTPase CgtA; Reviewed	95.57
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	95.54
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	95.53
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	95.52
KOG3883	198	consensus Ras family small GTPase [Signal transduc	95.52
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	95.47
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	95.47
CHL00189	742	infB translation initiation factor 2; Provisional	95.46
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.45
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	95.45
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	95.45
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	95.43
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	95.4
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.31
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	95.31
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	95.3
PRK00093	435	GTP-binding protein Der; Reviewed	95.22
PRK12297	424	obgE GTPase CgtA; Reviewed	95.2
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.2
TIGR00503	527	prfC peptide chain release factor 3. This translat	95.19
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.19
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.18
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	95.18
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	95.17
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.12
PRK12740	668	elongation factor G; Reviewed	95.09
PRK12317	425	elongation factor 1-alpha; Reviewed	95.04
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	95.03
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.03
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	95.02
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	95.01
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	94.98
PTZ00133	182	ADP-ribosylation factor; Provisional	94.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	94.96
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.94
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	94.92
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	94.92
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	94.91
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	94.91
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	94.91
PRK08233	182	hypothetical protein; Provisional	94.9
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	94.89
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.88
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	94.84
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.83
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	94.83
COG4598	256	HisP ABC-type histidine transport system, ATPase c	94.82
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	94.79
PRK03839	180	putative kinase; Provisional	94.78
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	94.76
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	94.75
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	94.73
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	94.72
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	94.68
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	94.68
PRK00300	205	gmk guanylate kinase; Provisional	94.66
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	94.65
PLN00223	181	ADP-ribosylation factor; Provisional	94.65
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	94.65
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	94.65
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.62
smart00382	148	AAA ATPases associated with a variety of cellular	94.62
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.61
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	94.61
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.6
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	94.6
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	94.59
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	94.59
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	94.59
smart00178	184	SAR Sar1p-like members of the Ras-family of small	94.57
PRK13949	169	shikimate kinase; Provisional	94.57
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	94.55
PRK14530	215	adenylate kinase; Provisional	94.53
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	94.5
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	94.5
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	94.49
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	94.48
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	94.48
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	94.48
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	94.47
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	94.46
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	94.46
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	94.45
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	94.44
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.42
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.42
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	94.42
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	94.41
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	94.41
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	94.4
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	94.4
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.38
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	94.38
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	94.37
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	94.37
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	94.37
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.36
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	94.36
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.35
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	94.35
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	94.35
PF00004	132	AAA: ATPase family associated with various cellula	94.34
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	94.34
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	94.34
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	94.33
PRK05480	209	uridine/cytidine kinase; Provisional	94.33
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	94.33
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	94.32
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	94.31
PRK12298	390	obgE GTPase CgtA; Reviewed	94.31
PRK14532	188	adenylate kinase; Provisional	94.31
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.28
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	94.24
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	94.23
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	94.23
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	94.21
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.2
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	94.2
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	94.19
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	94.19
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.19
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	94.19
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	94.18
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	94.18
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	94.17
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	94.16
PLN03108	210	Rab family protein; Provisional	94.16
PRK11058	426	GTPase HflX; Provisional	94.15
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	94.14
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	94.14
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	94.14
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	94.14
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	94.13
COG4639	168	Predicted kinase [General function prediction only	94.13
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	94.12
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	94.12
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	94.12
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	94.11
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	94.09
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	94.09
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	94.06
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	94.06
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	94.05
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	94.05
PTZ00088	229	adenylate kinase 1; Provisional	94.04
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	94.04
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	94.04
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	94.03
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	94.03
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	94.02
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	94.02
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	94.02
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	94.02
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.02
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.0
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	93.98
PRK06547	172	hypothetical protein; Provisional	93.97
PRK02496	184	adk adenylate kinase; Provisional	93.96
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	93.96
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	93.96
PRK14531	183	adenylate kinase; Provisional	93.94
cd03234	226	ABCG_White The White subfamily represents ABC tran	93.92
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	93.92
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	93.91
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	93.9
cd03216	163	ABC_Carb_Monos_I This family represents the domain	93.89
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	93.89
PRK15494	339	era GTPase Era; Provisional	93.87
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	93.86
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	93.85
COG3638	258	ABC-type phosphate/phosphonate transport system, A	93.85
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	93.85
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	93.84
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	93.84
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	93.83
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	93.82
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	93.82
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	93.82
PRK06762	166	hypothetical protein; Provisional	93.82
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	93.81
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	93.81
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	93.81
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	93.81
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	93.81
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	93.8
PTZ00369	189	Ras-like protein; Provisional	93.79
PRK12739	691	elongation factor G; Reviewed	93.78
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	93.78
PF05729	166	NACHT: NACHT domain	93.78
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	93.77
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	93.77
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	93.77
cd03215	182	ABC_Carb_Monos_II This family represents domain II	93.76
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	93.76
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	93.71
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	93.69
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	93.69
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	93.69
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	93.69
PRK00279	215	adk adenylate kinase; Reviewed	93.68
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	93.66
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	93.65
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	93.64
PRK10908	222	cell division protein FtsE; Provisional	93.64
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	93.64
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	93.63
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	93.62
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	93.62
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	93.61
PRK09825	176	idnK D-gluconate kinase; Provisional	93.61
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	93.61
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	93.61
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	93.61
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	93.6
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	93.6
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	93.59
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	93.59
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	93.59
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	93.59
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	93.58
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	93.57
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	93.57
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	93.56
cd03246	173	ABCC_Protease_Secretion This family represents the	93.56
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	93.56
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	93.56
PRK14738	206	gmk guanylate kinase; Provisional	93.55
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	93.54
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	93.53
PLN03046	460	D-glycerate 3-kinase; Provisional	93.53
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	93.53
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	93.52
COG4559	259	ABC-type hemin transport system, ATPase component	93.52
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	93.51
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	93.5
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	93.5
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	93.5
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	93.49
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	93.49
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	93.49
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	93.47
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	93.46
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	93.45
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	93.44
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	93.43
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	93.42
PRK14527	191	adenylate kinase; Provisional	93.42
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	93.42
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	93.41
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	93.41
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	93.39
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	93.37
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	93.37
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	93.37
PRK05057	172	aroK shikimate kinase I; Reviewed	93.36
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	93.35
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	93.35
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	93.34
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	93.34
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	93.34
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	93.32
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	93.32
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	93.32
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	93.3
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	93.3
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	93.3
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	93.29
PF09439	181	SRPRB: Signal recognition particle receptor beta s	93.29
PRK00131	175	aroK shikimate kinase; Reviewed	93.27
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	93.27
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	93.27
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	93.27
PRK14737	186	gmk guanylate kinase; Provisional	93.26
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	93.26
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	93.26
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	93.25
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	93.25
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	93.24
COG2884	223	FtsE Predicted ATPase involved in cell division [C	93.23
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	93.22
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	93.22
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	93.21
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	93.21
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	93.2
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	93.18
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	93.17
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	93.17
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	93.16
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	93.16
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	93.16
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	93.15
PRK14528	186	adenylate kinase; Provisional	93.15
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	93.14
PTZ00301	210	uridine kinase; Provisional	93.14
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	93.14
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	93.14
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	93.13
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	93.13
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	93.12
PRK13695	174	putative NTPase; Provisional	93.12
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	93.11
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	93.11
PF13173	128	AAA_14: AAA domain	93.1
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	93.1
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	93.09
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	93.07
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	93.07
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	93.06
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	93.06
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	93.06
PHA02530	300	pseT polynucleotide kinase; Provisional	93.06
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	93.05
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	93.05
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	93.05
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	93.04
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	93.04
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	93.03
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	93.02

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=100.00  E-value=6.6e-86  Score=631.98  Aligned_cols=301  Identities=44%  Similarity=0.695  Sum_probs=277.8

Q ss_pred             ccccccCCCCCChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 019426            9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH   88 (341)
Q Consensus         9 mg~~~~~~~~~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~   88 (341)
                      ||++||      .+.+++.++|++||++|++++++.++.+|+||||+|||||||++||||++|.+||+.+|+..|+++|+
T Consensus         1 MG~~~s------~e~~~~~~~~~~I~~~l~~~~~~~~~~iKlLLLGageSGKSTI~KQmkilh~~gfs~ee~~~~r~~I~   74 (354)
T KOG0082|consen    1 MGCICS------AEEKEQVKRSKEIDKQLKKEKKKEKKIIKLLLLGAGESGKSTIVKQMKILHGDGFSEEELLEYRPVIY   74 (354)
T ss_pred             CCcccC------chhhhcchhhhhhhHHHHHHHHhhhhheeeeeecCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            898887      34566778999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCC-CCCCcHHHHHHHHHhcCChHHHHHHHcCCCC
Q 019426           89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLD-YPRLTKELAEDIETLWADPAIQETYAHGNEL  167 (341)
Q Consensus        89 ~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~  167 (341)
                      .|+++++..|++||..++++..       .+..+..+..+........ .+++++|+++.|.+||+||+||+||+|+++|
T Consensus        75 ~N~~~~~~~ll~a~~~~~i~~~-------~~~~~~d~~~~~~~~~~~~~~~~~~~e~~~~i~~lW~d~~Iq~~~~r~~e~  147 (354)
T KOG0082|consen   75 SNIIQSLKALLRAMETLGINLD-------DPERENDAQKLTLLADAAEELGVFSPELAEAIKELWKDPGIQACYERRREF  147 (354)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------ChhhhhHHHHHHHhhhcccccccCCHHHHHHHHHHHcCHHHHHHHHcCCcC
Confidence            9999999999999998886542       2334444444433322222 2679999999999999999999999999999


Q ss_pred             CCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccE
Q 019426          168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA  247 (341)
Q Consensus       168 ~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~  247 (341)
                      +|+|++.|||++++||+.|+|+||++||||+|.||+||.|+.|      .+++.+|+++||||||+||+||+|||++|+|
T Consensus       148 ~l~Dsa~Yfl~~l~rI~~~~Y~PT~~DIL~~R~~T~GI~e~~F------~~k~~~f~~~DvGGQRseRrKWihcFe~v~a  221 (354)
T KOG0082|consen  148 QLNDSAKYFLENLDRISSPDYVPTEQDILRSRVPTTGIVEVEF------TIKGLKFRMFDVGGQRSERKKWIHCFEDVTA  221 (354)
T ss_pred             CCCccHHHHHHhHHHhcCCCCCCCHHHHHhhccCcCCeeEEEE------EeCCCceEEEeCCCcHHHhhhHHHhhcCCCE
Confidence            9999999999999999999999999999999999999999999      8999999999999999999999999999999


Q ss_pred             EEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeec
Q 019426          248 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFW  326 (341)
Q Consensus       248 IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~  326 (341)
                      |||||++|+|||++.||+.+|||+||+.||++|||++||.+       ++||||+| .|+|     ++|+ ..+++++||
T Consensus       222 viF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~-------tsiiLFLNK~DLF-----eEKi-~~~~~~~~F  288 (354)
T KOG0082|consen  222 VIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN-------TSIILFLNKKDLF-----EEKI-KKVPLTDCF  288 (354)
T ss_pred             EEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc-------CcEEEEeecHHHH-----HHHh-ccCchhhhC
Confidence            99999999999999999999999999999999999999999       89999999 9999     9999 899999999


Q ss_pred             ccccc-chhhhhhhcC
Q 019426          327 YSFAE-NFLHAVSKQI  341 (341)
Q Consensus       327 ~~~~~-~~~~~~~~~~  341 (341)
                      |+|.| |+++++.+||
T Consensus       289 pdy~G~~~~~~a~~yI  304 (354)
T KOG0082|consen  289 PDYKGVNTYEEAAKYI  304 (354)
T ss_pred             cCCCCCCChHHHHHHH
Confidence            99999 9999999886

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3e-81  Score=561.53  Aligned_cols=302  Identities=33%  Similarity=0.587  Sum_probs=279.4

Q ss_pred             hhccccccCCCCCChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHH
Q 019426            7 ENMGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISV   86 (341)
Q Consensus         7 ~~mg~~~~~~~~~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~   86 (341)
                      +-+++||     .+++++++++.+++|+|||..+++..++++|+||||+||||||||+||||++|+.||++++++.|.+.
T Consensus         4 ~~~~~cc-----lsee~ke~~ri~~eierql~rdkk~arrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~l   78 (359)
T KOG0085|consen    4 LTWMCCC-----LSEEEKEAARINQEIERQLRRDKKDARRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKL   78 (359)
T ss_pred             hhhhHhh-----CcHhHHHHHHHHHHHHHHHHHHhHhhhhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHH
Confidence            3455554     57899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCC
Q 019426           87 IHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNE  166 (341)
Q Consensus        87 I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~  166 (341)
                      ||+|++.+|+++++||+.|.+..       ..++|++++..+.+.+... ...+...++.+|+.||.|||||+||+||++
T Consensus        79 vyqnif~amqaMIrAMetL~I~y-------~~e~nk~~A~~vrevd~ek-Vttfe~~yv~aik~LW~D~GIqeCYdRRRE  150 (359)
T KOG0085|consen   79 VYQNIFTAMQAMIRAMETLKIPY-------KREENKAHASLVREVDVEK-VTTFEKRYVSAIKWLWRDPGIQECYDRRRE  150 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhhHhhhcchHH-hhhhhHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            99999999999999999999864       3578888888887764432 235778999999999999999999999999


Q ss_pred             CCCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCcc
Q 019426          167 LQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS  246 (341)
Q Consensus       167 ~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~  246 (341)
                      ++|.|++.|+|.+++||+.|+|.||.+|+||.|+||+||.|+.|      ....+.|+++|||||+++|+||+|||++|+
T Consensus       151 yqLsDSakYylsdldria~~~ylPTqQDvLRvRvPTTGi~eypf------dl~~iifrmvDvGGqrserrKWIHCFEnvt  224 (359)
T KOG0085|consen  151 YQLSDSAKYYLSDLDRIATPGYLPTQQDVLRVRVPTTGIIEYPF------DLQKIIFRMVDVGGQRSERRKWIHCFENVT  224 (359)
T ss_pred             hhcchhhhHHhhhhhhhcCcccCcchhhhheeecCcccceecCc------chhhheeeeeecCCchhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999      788999999999999999999999999999


Q ss_pred             EEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeee
Q 019426          247 AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIF  325 (341)
Q Consensus       247 ~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~  325 (341)
                      +|+|+|+||+|||+|.|..+.|||+||+.+|..|+..|||.+       .++|+|+| .|+|     +.|+ .-.-+-+|
T Consensus       225 si~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~n-------ssVIlFLNKkDlL-----EekI-~ySHl~~Y  291 (359)
T KOG0085|consen  225 SIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN-------SSVILFLNKKDLL-----EEKI-LYSHLADY  291 (359)
T ss_pred             HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccC-------CceEEEechhhhh-----hhhh-hHHHHHHh
Confidence            999999999999999999999999999999999999999999       88999999 9999     8888 45558999


Q ss_pred             cccccc--chhhhhhhc
Q 019426          326 WYSFAE--NFLHAVSKQ  340 (341)
Q Consensus       326 ~~~~~~--~~~~~~~~~  340 (341)
                      ||||.|  .|..++-..
T Consensus       292 FPe~~GP~qDa~AAreF  308 (359)
T KOG0085|consen  292 FPEFDGPKQDAQAAREF  308 (359)
T ss_pred             CcccCCCcccHHHHHHH
Confidence            999999  888877543

>smart00275 G_alpha G protein alpha subunit

Probab=100.00  E-value=1.9e-74  Score=560.07  Aligned_cols=288  Identities=41%  Similarity=0.630  Sum_probs=264.1

Q ss_pred             HhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019426           28 AQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQ  107 (341)
Q Consensus        28 ~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~  107 (341)
                      ++|++||++|++++++.++.+|+||||+|||||||++||||++|.+||+.+|+..|+++|+.|++++|+.|+++|+.+++
T Consensus         2 ~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmril~~~gfs~~E~~~~~~~I~~Nii~~~~~ll~a~~~~~i   81 (342)
T smart00275        2 RRNKEIEKQLEEERKKKKREVKLLLLGAGESGKSTILKQMRILHGDGFSQEERREYRPLIYSNILESMKALVDAMEELNI   81 (342)
T ss_pred             cchHHHHHHHHHhHHHhhcchheeeeecCCCcchhHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             cccccccccCCcchHHHHHHHhhccC--CCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccC
Q 019426          108 NETDSMKFVVSSENKEIGEKLSEIGG--RLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSD  185 (341)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~  185 (341)
                      +..       .+++...+..+.....  ......+++++++.|..||+||+||.+|.++++|+|+|++.|||++++||++
T Consensus        82 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~  154 (342)
T smart00275       82 PFE-------DPESILDIRIITEQFNKTDETENVLPKEIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGD  154 (342)
T ss_pred             CCC-------ChhhHHHHHHHhccccccccccccCCHHHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhC
Confidence            532       2333344444444321  1111357899999999999999999999999999999999999999999999


Q ss_pred             CCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCC
Q 019426          186 ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE  265 (341)
Q Consensus       186 ~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~  265 (341)
                      |+|+||++||||+|.||+|+++..|      .+++.++++||||||+++|+||.|||+++++||||||+|+|||+++||+
T Consensus       155 ~~y~Pt~~Dil~~r~~T~Gi~~~~f------~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~  228 (342)
T smart00275      155 PDYVPTEQDILRSRVPTTGIQETAF------IVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDE  228 (342)
T ss_pred             CCCCCCHHHhhheeCCccceEEEEE------EECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccC
Confidence            9999999999999999999999999      7899999999999999999999999999999999999999999999999


Q ss_pred             CccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc-chhhhhhhcC
Q 019426          266 QKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE-NFLHAVSKQI  341 (341)
Q Consensus       266 ~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  341 (341)
                      .+|||+||+.+|+++|++++|++       .||+||+| +|+|     ..|+..+ +|+.|||+|+| |+++++.+||
T Consensus       229 ~~nrl~esl~~f~~l~~~~~~~~-------~piil~~NK~D~~-----~~Kl~~~-~l~~~fp~y~g~~~~~~~~~yi  293 (342)
T smart00275      229 STNRMQESLNLFESICNSRWFAN-------TSIILFLNKIDLF-----EEKIKKV-PLVDYFPDYKGPNDYEAAAKFI  293 (342)
T ss_pred             cchHHHHHHHHHHHHHcCccccC-------CcEEEEEecHHhH-----HHHhCCC-chhccCCCCCCCCCHHHHHHHH
Confidence            99999999999999999999998       89999999 9999     8899665 99999999999 9999999886

Subunit of G proteins that contains the guanine nucleotide binding site

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=100.00  E-value=4.5e-73  Score=559.78  Aligned_cols=302  Identities=42%  Similarity=0.704  Sum_probs=259.0

Q ss_pred             hhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019426           22 ADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG  101 (341)
Q Consensus        22 ~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a  101 (341)
                      +.+++..++++|+++++++++..++.+||||||+||||||||+||||++|.++|+++|+..|+++|+.|++++|+.|+++
T Consensus        33 ~~~~~~~~~~~~~~~l~~~~~~~~~~~kiLLLG~geSGKSTi~KQ~ril~~~~~~~~E~~~~~~~I~~Nii~~~~~i~~~  112 (389)
T PF00503_consen   33 EEKEQKKRSDDIDRQLEKDKKRSKREIKILLLGSGESGKSTILKQMRILYGPGFSEEERESYRPIIYSNIIQSMKQILEA  112 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEESTTSSHHHHHHHHHHHHST---HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhhccceEEEECCCCcchhhHHHHHHHHhCCCCchhhhhcceeeEecCchhhHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccccccCCcchHHHHHHHhhccCCCCCC---------CCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcc
Q 019426          102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP---------RLTKELAEDIETLWADPAIQETYAHGNELQLPDC  172 (341)
Q Consensus       102 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~  172 (341)
                      +..+++..........++++......+.......+..         .+++++++.|..||+||+||++|+++++++++|+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~  192 (389)
T PF00503_consen  113 LEELGIPFSFSESSQLNEENQEIAEKLKEILDPLDSSEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDN  192 (389)
T ss_dssp             HHHTTCH-SSS-TT--STTHHHHHHHHHHHHCTTSTTCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TT
T ss_pred             HHHcCCCccccccccCCHHHHHHHHHHHhhhccccccccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhccccccc
Confidence            9988865321111111345555566555543322211         3788999999999999999999999899999999


Q ss_pred             hhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCccc-CCceeEEEecCCccccccccccccCCccEEEEE
Q 019426          173 ANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC  251 (341)
Q Consensus       173 ~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~-~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFv  251 (341)
                      +.|||++++||++++|.||++||||+|.+|+||.|+.|      .+ ++..|+++||||||++|+||+|||++|++||||
T Consensus       193 ~~YFl~~l~RI~~~~Y~PT~~DIl~~r~~T~Gi~e~~f------~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~  266 (389)
T PF00503_consen  193 AKYFLDNLDRIAQPDYIPTDEDILRCRVKTTGITEIDF------NFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFV  266 (389)
T ss_dssp             HHHHHTTHHHHHSTTB---HHHHHHS----SSEEEEEE------EE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEE
T ss_pred             HHHHhhhhhhhcCCCccCCCCCeeeecCCCCCeeEEEE------EeecccccceecCCCCchhhhhHHHHhccccEEEEe
Confidence            99999999999999999999999999999999999999      78 899999999999999999999999999999999


Q ss_pred             eeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeeccccc
Q 019426          252 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFA  330 (341)
Q Consensus       252 vslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~  330 (341)
                      ||||+|||+++||+.+|||+||+.+|++||+++||++       .||+||+| +|+|     ++|+..+.++++|||+|+
T Consensus       267 vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~-------~~iil~lnK~D~f-----~~Kl~~~~~l~~~fp~y~  334 (389)
T PF00503_consen  267 VSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN-------TPIILFLNKIDLF-----EEKLKKGPKLSKYFPDYT  334 (389)
T ss_dssp             EEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT-------SEEEEEEE-HHHH-----HHHTTTSSCGGGTSTTGG
T ss_pred             ecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc-------CceEEeeecHHHH-----HHHccCCCchHhhCCCCC
Confidence            9999999999999999999999999999999999998       89999998 9999     999988888999999997


Q ss_pred             c---chhhhhhhcC
Q 019426          331 E---NFLHAVSKQI  341 (341)
Q Consensus       331 ~---~~~~~~~~~~  341 (341)
                      |   |+++++.+||
T Consensus       335 g~~~~~~~~~~~~i  348 (389)
T PF00503_consen  335 GDRPNDVDSAIKFI  348 (389)
T ss_dssp             SH-TSSHHHHHHHH
T ss_pred             CCcccCHHHHHHHH
Confidence            7   7999998885

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=1e-73  Score=520.00  Aligned_cols=299  Identities=32%  Similarity=0.556  Sum_probs=272.5

Q ss_pred             ccccccC-CCCCChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHH
Q 019426            9 MGLLCSK-NRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVI   87 (341)
Q Consensus         9 mg~~~~~-~~~~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I   87 (341)
                      ||++.+. ......+.++++.+|+.|++||..++...+...|+||||+|||||||++||||++|-+||+++|++...+-|
T Consensus         1 m~~~~~k~~~~~~~~~~~q~~~s~~i~~ql~~~k~~~~aThrlLLLGagESGKsTIvKQMRILHvnGF~~~EkreKI~dI   80 (379)
T KOG0099|consen    1 MGCLGSKKTEDQRAEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNDEEKREKIQDI   80 (379)
T ss_pred             CCcccCCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHhheeccccccchhhhhhhheeeecCCChHHHHHhhHHH
Confidence            6655433 222445667889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCC
Q 019426           88 HANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNEL  167 (341)
Q Consensus        88 ~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~  167 (341)
                      ++|+-++|.+|+.+|..+..+     ....+++++-.+++|.++....+ ..+++|+.+.+..||+|.||+.||+|++||
T Consensus        81 ~~Ni~eai~~iv~aM~~l~p~-----v~l~~~~~~~~~dYIls~~~~~~-~~~~~Ef~dHv~~lW~D~Gv~acyeRSnEy  154 (379)
T KOG0099|consen   81 KNNIKEAILTIVGAMSNLVPP-----VELANPENQFRVDYILSVMNSPD-FDYPPEFYDHVKTLWEDEGVRACYERSNEY  154 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCC-----cccCCcccchhHHHHHhcCCCCc-ccCCHHHHHHHHHHhhhhhHHHHHhccCcc
Confidence            999999999999999987732     22457788888899988765432 367899999999999999999999999999


Q ss_pred             CCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccE
Q 019426          168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSA  247 (341)
Q Consensus       168 ~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~  247 (341)
                      +|.|+|.|||+++++|.+++|+|+++||||||+-|+||.|++|      ++...+|+|+||||||.||+||++||.+|+|
T Consensus       155 qLiDcAqYFLd~~~~i~~~~Y~Ps~qDiLrcRvlTsGIfet~F------qVdkv~FhMfDVGGQRDeRrKWIQcFndvtA  228 (379)
T KOG0099|consen  155 QLIDCAQYFLDKIDVIKQADYVPSDQDILRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVTA  228 (379)
T ss_pred             chhhHHHHHHHhhheecccCCCCcHHHHHHhhhhccceeeEEE------eccccceeeeccCCchhhhhhHHHHhcCccE
Confidence            9999999999999999999999999999999999999999999      8999999999999999999999999999999


Q ss_pred             EEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccc-cceeee
Q 019426          248 VIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFF-LKKKIF  325 (341)
Q Consensus       248 IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~-~~~~~~  325 (341)
                      ||||++.|.||+++.||+++|||+||+.||++|.|++|++.       ..+|||+| -|+|     ..|+..| .++.+|
T Consensus       229 iifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~t-------isvIlFLNKqDll-----aeKi~Agk~~i~dy  296 (379)
T KOG0099|consen  229 IIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRT-------ISVILFLNKQDLL-----AEKILAGKSKIEDY  296 (379)
T ss_pred             EEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhh-------hheeEEecHHHHH-----HHHHHcchhhHHHh
Confidence            99999999999999999999999999999999999999987       88999999 9999     6676555 559999


Q ss_pred             cccccc
Q 019426          326 WYSFAE  331 (341)
Q Consensus       326 ~~~~~~  331 (341)
                      ||||++
T Consensus       297 FpEf~~  302 (379)
T KOG0099|consen  297 FPEFAR  302 (379)
T ss_pred             ChHHhc
Confidence            999998

>cd00066 G-alpha G protein alpha subunit

Probab=100.00  E-value=4.3e-70  Score=524.99  Aligned_cols=268  Identities=45%  Similarity=0.702  Sum_probs=248.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEK  127 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~  127 (341)
                      +|+||||+|||||||++||||++|.+||+++|+..|+.+|+.|++++|+.|+++++.++++.       .++++...+..
T Consensus         1 ~klLlLG~geSGKSTi~KQmril~~~gfs~~Er~~~~~~I~~Ni~~~~~~ll~a~~~~~i~~-------~~~~~~~~~~~   73 (317)
T cd00066           1 VKLLLLGAGESGKSTILKQMKILHGDGFSEEELREYRPVIYSNILQSMKALLEAMERLNIPF-------GDPENEKDAKK   73 (317)
T ss_pred             CeEEEecCCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChhhHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999988653       24556566666


Q ss_pred             HhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEE
Q 019426          128 LSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVE  207 (341)
Q Consensus       128 i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e  207 (341)
                      +...........+++++++.|..||+||+||++|.++++++++|++.|||++++||++|+|.||++|||++|.||+|+.+
T Consensus        74 i~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~~~y~Pt~~Dil~~r~~T~Gi~~  153 (317)
T cd00066          74 ILSFAPELEEGELPPELAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISDPDYIPTEQDILRARVKTTGIVE  153 (317)
T ss_pred             HHhccccccccCCCHHHHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhCCCCCCChhHheeeecccCCeeE
Confidence            66554332335689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc
Q 019426          208 IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  287 (341)
Q Consensus       208 ~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~  287 (341)
                      +.|      .+++.++++||||||+++|+||.|||+++++||||||+|+|||.+.||+.+|||+||+.+|++++++++|+
T Consensus       154 ~~f------~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~  227 (317)
T cd00066         154 TKF------TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA  227 (317)
T ss_pred             EEE------EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence            999      88999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCceeEEEEec-cCccCccccccccccccceeeecccccc--chhhhhhhcC
Q 019426          288 VFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE--NFLHAVSKQI  341 (341)
Q Consensus       288 ~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  341 (341)
                      +       .||+||+| +|+|     ..|+..+ +|++|||+|+|  |+++++.+||
T Consensus       228 ~-------~pill~~NK~D~f-----~~ki~~~-~l~~~fp~y~g~~~~~~~~~~~i  271 (317)
T cd00066         228 N-------TSIILFLNKKDLF-----EEKIKKS-PLTDYFPDYTGPPNDYEEAAKFI  271 (317)
T ss_pred             C-------CCEEEEccChHHH-----HHhhcCC-CccccCCCCCCCCCCHHHHHHHH
Confidence            8       89999999 9999     8888554 99999999999  8999998886

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.2e-16  Score=134.25  Aligned_cols=88  Identities=19%  Similarity=0.378  Sum_probs=82.2

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .||+|++....      .+++..|.+||||||..-|+.|.|||.+..++|||+|+++          .|||+||++.+++
T Consensus        46 ipTvGFnvetV------tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~----------~dr~eeAr~ELh~  109 (180)
T KOG0071|consen   46 IPTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIEEARNELHR  109 (180)
T ss_pred             ccccceeEEEE------EeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccc----------hhhHHHHHHHHHH
Confidence            58999998887      7899999999999999999999999999999999999998          6999999999999


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCccCcc
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                      ++++|.+..       .++++++| .|+...+
T Consensus       110 ii~~~em~~-------~~~LvlANkQDlp~A~  134 (180)
T KOG0071|consen  110 IINDREMRD-------AIILILANKQDLPDAM  134 (180)
T ss_pred             HhCCHhhhc-------ceEEEEecCccccccc
Confidence            999999988       89999999 8887555

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=9.3e-16  Score=134.48  Aligned_cols=88  Identities=25%  Similarity=0.434  Sum_probs=82.2

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .||.|++...+      .+++++|.+||||||.+.|.-|.|||.+.++||||||++|          ..||.||++.+..
T Consensus        46 vPTiGfnVE~v------~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~D----------r~Ri~eak~eL~~  109 (181)
T KOG0070|consen   46 VPTIGFNVETV------EYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSD----------RERIEEAKEELHR  109 (181)
T ss_pred             CCccccceeEE------EEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCc----------HHHHHHHHHHHHH
Confidence            68999999999      7899999999999999999999999999999999999998          6899999999999


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCccCcc
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                      +++++.+.+       +|+++|+| .|+...+
T Consensus       110 ~l~~~~l~~-------~~llv~aNKqD~~~al  134 (181)
T KOG0070|consen  110 MLAEPELRN-------APLLVFANKQDLPGAL  134 (181)
T ss_pred             HHcCcccCC-------ceEEEEechhhccccC
Confidence            999999887       99999999 8876444

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.50  E-value=9.2e-14  Score=122.61  Aligned_cols=88  Identities=25%  Similarity=0.417  Sum_probs=81.0

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .||.|++...+      .+.+.++.+||+|||...|..|.+||.++++||||||.++          .+|+.||++.|..
T Consensus        43 ~pT~g~~~~~i------~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd----------~~~l~e~~~~L~~  106 (175)
T PF00025_consen   43 IPTIGFNIEEI------KYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSD----------PERLQEAKEELKE  106 (175)
T ss_dssp             EEESSEEEEEE------EETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTG----------GGGHHHHHHHHHH
T ss_pred             Cccccccccee------eeCcEEEEEEeccccccccccceeeccccceeEEEEeccc----------ceeecccccchhh
Confidence            58889999999      7889999999999999999999999999999999999998          5799999999999


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCccCcc
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                      +++++.+++       .|++|++| +|+...+
T Consensus       107 ll~~~~~~~-------~piLIl~NK~D~~~~~  131 (175)
T PF00025_consen  107 LLNDPELKD-------IPILILANKQDLPDAM  131 (175)
T ss_dssp             HHTSGGGTT-------SEEEEEEESTTSTTSS
T ss_pred             hcchhhccc-------ceEEEEeccccccCcc
Confidence            999998877       89999999 9987443

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.50  E-value=2.3e-14  Score=123.33  Aligned_cols=91  Identities=21%  Similarity=0.336  Sum_probs=81.9

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .||.|++....      .+++.++.+||||||+..|..|.+||+.++|+|||||+||          .-||+|....+..
T Consensus        45 ~pt~gf~Iktl------~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD----------~~r~~e~~~~L~~  108 (185)
T KOG0073|consen   45 SPTLGFQIKTL------EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSD----------RMRMQECKQELTE  108 (185)
T ss_pred             CCccceeeEEE------EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECch----------HHHHHHHHHHHHH
Confidence            47889998888      7889999999999999999999999999999999999998          5899999999999


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCccCccccc
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQ  313 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~  313 (341)
                      ++..+.+..       .|+++++| .|+.+..+..
T Consensus       109 lL~eerlaG-------~~~Lvlank~dl~~~l~~~  136 (185)
T KOG0073|consen  109 LLVEERLAG-------APLLVLANKQDLPGALSLE  136 (185)
T ss_pred             HHhhhhhcC-------CceEEEEecCcCccccCHH
Confidence            999988887       89999999 8887444433

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=2.2e-13  Score=115.07  Aligned_cols=85  Identities=18%  Similarity=0.281  Sum_probs=78.8

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .||.|++...+      .+++.++.+||+|||.+-|..|..||+++++||||||.||          ..|+--|..+|..
T Consensus        47 kPtigfnve~v------~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd----------~dris~a~~el~~  110 (182)
T KOG0072|consen   47 KPTIGFNVETV------PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSD----------RDRISIAGVELYS  110 (182)
T ss_pred             CCCCCcCcccc------ccccccceeeEccCcccccHHHHHHhcccceEEEEEeccc----------hhhhhhhHHHHHH
Confidence            58889988888      7899999999999999999999999999999999999998          5789999999999


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCcc
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      ++..+.+.+       ..+++|+| .|.-
T Consensus       111 mL~E~eLq~-------a~llv~anKqD~~  132 (182)
T KOG0072|consen  111 MLQEEELQH-------AKLLVFANKQDYS  132 (182)
T ss_pred             HhccHhhcC-------ceEEEEeccccch
Confidence            999999998       88999999 7763

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.39  E-value=3.6e-13  Score=113.48  Aligned_cols=88  Identities=20%  Similarity=0.379  Sum_probs=77.0

Q ss_pred             ccccCeEEEEeccCCCcccCC-ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSG-EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  278 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~-~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~  278 (341)
                      .||.|++....      ++.+ +++.+||+||||+-|..|.+||++++.+|||+|++|          ..|.+|--+.+-
T Consensus        46 tpT~GFn~k~v------~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D----------~krfeE~~~el~  109 (185)
T KOG0074|consen   46 TPTNGFNTKKV------EYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTD----------EKRFEEISEELV  109 (185)
T ss_pred             cccCCcceEEE------eecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCc----------hHhHHHHHHHHH
Confidence            57889998888      5554 899999999999999999999999999999999776          578888888888


Q ss_pred             HHhcCccccCccccCCceeEEEEec-cCccCcc
Q 019426          279 WVLKQPCFEVFFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       279 ~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                      +++....++.       .|++||+| .|+|-++
T Consensus       110 ELleeeKl~~-------vpvlIfankQdlltaa  135 (185)
T KOG0074|consen  110 ELLEEEKLAE-------VPVLIFANKQDLLTAA  135 (185)
T ss_pred             HHhhhhhhhc-------cceeehhhhhHHHhhc
Confidence            8888887777       99999999 8888555

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.29  E-value=5.6e-12  Score=106.97  Aligned_cols=85  Identities=19%  Similarity=0.382  Sum_probs=79.1

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .||.|++-.++      ..+.+++++||+|||+..|..|..|+.+|++|+||||.+|          ...+.-|++.+++
T Consensus        50 iptvGfnmrk~------tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad----------~~k~~~sr~EL~~  113 (186)
T KOG0075|consen   50 IPTVGFNMRKV------TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAAD----------PDKLEASRSELHD  113 (186)
T ss_pred             cccccceeEEe------ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCC----------cccchhhHHHHHH
Confidence            78999999999      7888999999999999999999999999999999999998          4679999999999


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCcc
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      ++..|.+.+       +|++++.| .|+-
T Consensus       114 LL~k~~l~g-------ip~LVLGnK~d~~  135 (186)
T KOG0075|consen  114 LLDKPSLTG-------IPLLVLGNKIDLP  135 (186)
T ss_pred             HhcchhhcC-------CcEEEecccccCc
Confidence            999999888       99999998 7764

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=2.1e-11  Score=106.12  Aligned_cols=110  Identities=19%  Similarity=0.298  Sum_probs=94.5

Q ss_pred             Ccchh--hHHhhhhhccCCCCccCcc-cceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCcc
Q 019426          170 PDCAN--YFMENLQRLSDANYVPTKD-DVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS  246 (341)
Q Consensus       170 ~d~~~--YFl~~l~ri~~~~Y~Pt~~-DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~  246 (341)
                      +|+|+  -||+..+..+..+|.-.+- -|    .+|.|.+....      .++...+.+||+|||.+.|..|..||..++
T Consensus        25 ldnAGKttfLe~~Kt~~~~~~~~l~~~ki----~~tvgLnig~i------~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H   94 (197)
T KOG0076|consen   25 LDNAGKTTFLEALKTDFSKAYGGLNPSKI----TPTVGLNIGTI------EVCNAPLSFWDLGGQESLRSLWKKYYWLAH   94 (197)
T ss_pred             cccCCchhHHHHHHHHHHhhhcCCCHHHe----ecccceeecce------eeccceeEEEEcCChHHHHHHHHHHHHHhc
Confidence            66664  6888888777766664321 13    68999998888      677899999999999999999999999999


Q ss_pred             EEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCc
Q 019426          247 AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEH  306 (341)
Q Consensus       247 ~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~  306 (341)
                      +|||++|.++          ..|++++...|+.++.++.+.+       +|+++.+| -|+
T Consensus        95 ~ii~viDa~~----------~eR~~~~~t~~~~v~~~E~leg-------~p~L~lankqd~  138 (197)
T KOG0076|consen   95 GIIYVIDATD----------RERFEESKTAFEKVVENEKLEG-------APVLVLANKQDL  138 (197)
T ss_pred             eeEEeecCCC----------HHHHHHHHHHHHHHHHHHHhcC-------Cchhhhcchhhh
Confidence            9999999997          6899999999999999999988       99999999 555

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.07  E-value=2.6e-10  Score=101.06  Aligned_cols=84  Identities=20%  Similarity=0.376  Sum_probs=71.0

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|++...+      ...+..+.+||++||...|..|.++|.+++++|||+|+++.          .++.++...+..+
T Consensus        47 pt~g~~~~~~------~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~----------~s~~~~~~~l~~~  110 (181)
T PLN00223         47 PTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRM  110 (181)
T ss_pred             CCcceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcH----------HHHHHHHHHHHHH
Confidence            4445555555      56678999999999999999999999999999999999983          5688999999999


Q ss_pred             hcCccccCccccCCceeEEEEec-cCcc
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      ++.+.+.+       .|++|++| +|+.
T Consensus       111 l~~~~~~~-------~piilv~NK~Dl~  131 (181)
T PLN00223        111 LNEDELRD-------AVLLVFANKQDLP  131 (181)
T ss_pred             hcCHhhCC-------CCEEEEEECCCCC
Confidence            98776666       89999999 9975

>cd04155 Arl3 Arl3 subfamily

Probab=99.01  E-value=2e-09  Score=93.28  Aligned_cols=74  Identities=22%  Similarity=0.404  Sum_probs=59.4

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      ..+..+.+||++|++..+..|..++.++++++||+|.++          ..++.+....+..+.......+       .|
T Consensus        55 ~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~p  117 (173)
T cd04155          55 SDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSAD----------KKRLEEAGAELVELLEEEKLAG-------VP  117 (173)
T ss_pred             ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhChhhcC-------CC
Confidence            345788999999998888899999999999999999996          3457777777777776544444       78


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++++| +|+..
T Consensus       118 ~ivv~nK~D~~~  129 (173)
T cd04155         118 VLVFANKQDLAT  129 (173)
T ss_pred             EEEEEECCCCcc
Confidence            999998 99863

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04175 Rap1 Rap1 subgroup

Probab=98.98  E-value=3e-09  Score=91.50  Aligned_cols=72  Identities=10%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++|||+|+++          ...+++..+.+..+.+.....+       .|++
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii  110 (164)
T cd04175          48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA----------QSTFNDLQDLREQILRVKDTED-------VPMI  110 (164)
T ss_pred             EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence            3567899999999999999999999999999999986          3456666667777765433334       7899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       111 lv~nK~Dl~~  120 (164)
T cd04175         111 LVGNKCDLED  120 (164)
T ss_pred             EEEECCcchh
Confidence            9998 99863

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.97  E-value=1.4e-09  Score=94.68  Aligned_cols=84  Identities=21%  Similarity=0.406  Sum_probs=70.4

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|+....+      ...+..+.+||++|+...|..|.+||.+++++|||+|.++          ..++.++...+..+.
T Consensus        30 t~g~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~----------~~s~~~~~~~l~~l~   93 (167)
T cd04161          30 TVGFTPTKL------RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD----------DDRVQEVKEILRELL   93 (167)
T ss_pred             cccceEEEE------EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc----------hhHHHHHHHHHHHHH
Confidence            445544455      4567889999999999899999999999999999999997          367999999999999


Q ss_pred             cCccccCccccCCceeEEEEec-cCccC
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      +.+.+.+       .|++|++| +|+..
T Consensus        94 ~~~~~~~-------~piliv~NK~Dl~~  114 (167)
T cd04161          94 QHPRVSG-------KPILVLANKQDKKN  114 (167)
T ss_pred             cCccccC-------CcEEEEEeCCCCcC
Confidence            8766666       89999999 99863

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.95  E-value=1.6e-09  Score=95.21  Aligned_cols=74  Identities=22%  Similarity=0.413  Sum_probs=64.3

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+..+.+||++||...+..|.+||.+++++|||+|+++          ..+++++.+.+..+++...+.+       .
T Consensus        53 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~----------~~s~~~~~~~l~~~~~~~~~~~-------~  115 (175)
T smart00177       53 TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNEDELRD-------A  115 (175)
T ss_pred             EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHhhCHhhcC-------C
Confidence            3456789999999999999999999999999999999997          3678999999999988765555       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |++|++| +|+.
T Consensus       116 piilv~NK~Dl~  127 (175)
T smart00177      116 VILVFANKQDLP  127 (175)
T ss_pred             cEEEEEeCcCcc
Confidence            8999998 9976

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=98.93  E-value=1.9e-09  Score=93.14  Aligned_cols=74  Identities=22%  Similarity=0.423  Sum_probs=64.4

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ......+.+||++||...+..|.++|.+++++|||+|+++          ..+++++.+.+..++..+.+.+       .
T Consensus        40 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  102 (159)
T cd04150          40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERIGEAREELQRMLNEDELRD-------A  102 (159)
T ss_pred             EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhcHHhcC-------C
Confidence            4556889999999999888999999999999999999997          3678999999999988776655       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |++|++| +|+.
T Consensus       103 piilv~NK~Dl~  114 (159)
T cd04150         103 VLLVFANKQDLP  114 (159)
T ss_pred             CEEEEEECCCCC
Confidence            9999998 9975

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04149 Arf6 Arf6 subfamily

Probab=98.90  E-value=3.1e-09  Score=92.82  Aligned_cols=74  Identities=19%  Similarity=0.426  Sum_probs=63.9

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+..+.+||++|+...+..|.++|.+++++|||+|+++          ..++.+....+..+++.+.+.+       .
T Consensus        49 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~----------~~s~~~~~~~~~~~~~~~~~~~-------~  111 (168)
T cd04149          49 TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIDEARQELHRIINDREMRD-------A  111 (168)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCc----------hhhHHHHHHHHHHHhcCHhhcC-------C
Confidence            3456789999999999889999999999999999999997          3568888899999988766665       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |++|++| +|+.
T Consensus       112 piilv~NK~Dl~  123 (168)
T cd04149         112 LLLVFANKQDLP  123 (168)
T ss_pred             cEEEEEECcCCc
Confidence            8999998 9975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=98.86  E-value=7e-09  Score=90.27  Aligned_cols=74  Identities=20%  Similarity=0.377  Sum_probs=64.6

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+..+.+||++|+...+..|.++|.+++++|||+|+++          .+++.++...+..+++...+.+       .
T Consensus        39 ~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~----------~~s~~~~~~~~~~~~~~~~~~~-------~  101 (169)
T cd04158          39 EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH----------RDRVSEAHSELAKLLTEKELRD-------A  101 (169)
T ss_pred             EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc----------HHHHHHHHHHHHHHhcChhhCC-------C
Confidence            4567899999999999999999999999999999999997          3678889999999988765555       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |++|++| +|+.
T Consensus       102 piilv~NK~Dl~  113 (169)
T cd04158         102 LLLIFANKQDVA  113 (169)
T ss_pred             CEEEEEeCcCcc
Confidence            8999999 9975

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.84  E-value=5.7e-09  Score=92.47  Aligned_cols=74  Identities=19%  Similarity=0.419  Sum_probs=63.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+..+.+||++|+...+..|.+||.+++++|||+|+++          .+++.++...+..++..+.+.+       .
T Consensus        57 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~----------~~s~~~~~~~l~~~~~~~~~~~-------~  119 (182)
T PTZ00133         57 EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSND----------RERIGDAREELERMLSEDELRD-------A  119 (182)
T ss_pred             EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhCHhhcC-------C
Confidence            3456789999999999999999999999999999999997          3678888888998888766655       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |++|++| .|+.
T Consensus       120 piilv~NK~Dl~  131 (182)
T PTZ00133        120 VLLVFANKQDLP  131 (182)
T ss_pred             CEEEEEeCCCCC
Confidence            8999998 9975

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=98.80  E-value=9.2e-09  Score=91.14  Aligned_cols=74  Identities=20%  Similarity=0.400  Sum_probs=64.3

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||++|+...+..|.+||.+++++|||+|+++          ..++.++...+..++....+.+       .
T Consensus        57 ~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~----------~~~~~~~~~~l~~l~~~~~~~~-------~  119 (184)
T smart00178       57 AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYD----------KERFAESKRELDALLSDEELAT-------V  119 (184)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCc----------HHHHHHHHHHHHHHHcChhhcC-------C
Confidence            3456789999999999999999999999999999999997          3678888889999988766666       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       120 piliv~NK~Dl~  131 (184)
T smart00178      120 PFLILGNKIDAP  131 (184)
T ss_pred             CEEEEEeCcccc
Confidence            9999999 9975

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04110 Rab35 Rab35 subfamily

Probab=98.74  E-value=5.7e-08  Score=87.11  Aligned_cols=69  Identities=12%  Similarity=0.175  Sum_probs=53.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++||...+..|.+++.+++++|||+|+++          .+.+++....++.+.+..  .       ..|++|
T Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~----------~~s~~~~~~~~~~i~~~~--~-------~~piiv  115 (199)
T cd04110          55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN----------GESFVNVKRWLQEIEQNC--D-------DVCKVL  115 (199)
T ss_pred             EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhC--C-------CCCEEE
Confidence            468899999998889999999999999999999987          244555555555554421  1       268888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       116 VgNK~Dl~~  124 (199)
T cd04110         116 VGNKNDDPE  124 (199)
T ss_pred             EEECccccc
Confidence            898 99863

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.73  E-value=3.5e-08  Score=85.70  Aligned_cols=83  Identities=19%  Similarity=0.426  Sum_probs=65.8

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|+....+      ..++.++.+||+||+...+..|.++|.+++++|||+|+++.          .++..+...+..+
T Consensus        30 pt~g~~~~~i------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~----------~s~~~~~~~l~~~   93 (164)
T cd04162          30 PTTGFNSVAI------PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS----------ERLPLARQELHQL   93 (164)
T ss_pred             ccCCcceEEE------eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHH
Confidence            4555554455      45678999999999999999999999999999999999983          4677777777777


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccC
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      ....  .+       .|++|++| +|+..
T Consensus        94 ~~~~--~~-------~piilv~NK~Dl~~  113 (164)
T cd04162          94 LQHP--PD-------LPLVVLANKQDLPA  113 (164)
T ss_pred             HhCC--CC-------CcEEEEEeCcCCcC
Confidence            6543  34       78999999 99864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.73  E-value=6e-08  Score=84.28  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             ceeEEEecCCccccc-cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR-~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ..+.+||++|+...+ ..|.+++.+++++|||+|+++          ...+......++.+.....-.+       .|++
T Consensus        51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~p~i  113 (170)
T cd04115          51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN----------MASFHSLPSWIEECEQHSLPNE-------VPRI  113 (170)
T ss_pred             EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhcCCCC-------CCEE
Confidence            578999999997666 468899999999999999986          2334444444444433222223       7999


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       114 iv~nK~Dl~~  123 (170)
T cd04115         114 LVGNKCDLRE  123 (170)
T ss_pred             EEEECccchh
Confidence            9998 99863

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04157 Arl6 Arl6 subfamily

Probab=98.72  E-value=2.9e-08  Score=84.70  Aligned_cols=87  Identities=23%  Similarity=0.434  Sum_probs=67.6

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|+....+      ...+..+.+||++|+...+..|..+|.+++++|||+|.++          .+++..+...++.+.
T Consensus        32 t~g~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~~~~~~~~~~~~~~   95 (162)
T cd04157          32 TVGFNVESF------EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD----------RLRLVVVKDELELLL   95 (162)
T ss_pred             ccccceEEE------EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc----------HHHHHHHHHHHHHHH
Confidence            345444455      4567889999999999999999999999999999999997          356777777788887


Q ss_pred             cCccccCccccCCceeEEEEec-cCccCc
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      +.+.+.+     .-.|++|++| +|+...
T Consensus        96 ~~~~~~~-----~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          96 NHPDIKH-----RRVPILFFANKMDLPDA  119 (162)
T ss_pred             cCccccc-----CCCCEEEEEeCccccCC
Confidence            7665532     1278888888 998743

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00154 Rab Rab family

Probab=98.71  E-value=7.1e-08  Score=80.89  Aligned_cols=69  Identities=13%  Similarity=0.144  Sum_probs=51.9

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          +.+.+....+..+..... .       ..|+++
T Consensus        49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~-~-------~~p~iv  110 (159)
T cd00154          49 VKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNR----------ESFENLDKWLKELKEYAP-E-------NIPIIL  110 (159)
T ss_pred             EEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-C-------CCcEEE
Confidence            5788999999988888999999999999999999872          334555555555544321 1       267888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       111 v~nK~D~~  118 (159)
T cd00154         111 VGNKIDLE  118 (159)
T ss_pred             EEEccccc
Confidence            887 9996

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04122 Rab14 Rab14 subfamily

Probab=98.71  E-value=7.6e-08  Score=83.11  Aligned_cols=71  Identities=10%  Similarity=0.090  Sum_probs=51.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++          ...++........+.+..   .     +-.|++|
T Consensus        51 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~---~-----~~~~iii  112 (166)
T cd04122          51 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR----------RSTYNHLSSWLTDARNLT---N-----PNTVIFL  112 (166)
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC---C-----CCCeEEE
Confidence            578999999999888999999999999999999997          233444334444332211   0     1268888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      .+| +|+..+
T Consensus       113 v~nK~Dl~~~  122 (166)
T cd04122         113 IGNKADLEAQ  122 (166)
T ss_pred             EEECcccccc
Confidence            888 998744

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01863 Rab18 Rab18 subfamily

Probab=98.70  E-value=1.1e-07  Score=81.14  Aligned_cols=70  Identities=10%  Similarity=0.129  Sum_probs=52.4

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+......|..++.+++++|||+|+++          .+.++.....+..+.....-.+       .|+++
T Consensus        49 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~~~~i  111 (161)
T cd01863          49 VKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR----------RDTFTNLETWLNELETYSTNND-------IVKML  111 (161)
T ss_pred             EEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC----------HHHHHhHHHHHHHHHHhCCCCC-------CcEEE
Confidence            468999999998888889999999999999999986          2445555555555544322223       77888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      ++| +|+.
T Consensus       112 v~nK~D~~  119 (161)
T cd01863         112 VGNKIDKE  119 (161)
T ss_pred             EEECCccc
Confidence            888 9987

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01865 Rab3 Rab3 subfamily

Probab=98.69  E-value=8.2e-08  Score=82.90  Aligned_cols=70  Identities=11%  Similarity=0.227  Sum_probs=52.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.++++++||+|+++          .+.+++....++.+.... ..+       .|+++
T Consensus        50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~-------~piiv  111 (165)
T cd01865          50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN----------EESFNAVQDWSTQIKTYS-WDN-------AQVIL  111 (165)
T ss_pred             EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCC-------CCEEE
Confidence            578999999998888899999999999999999986          234554444444443211 112       68899


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       112 v~nK~Dl~~  120 (165)
T cd01865         112 VGNKCDMED  120 (165)
T ss_pred             EEECcccCc
Confidence            998 99863

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=98.68  E-value=4.2e-08  Score=85.86  Aligned_cols=75  Identities=19%  Similarity=0.299  Sum_probs=63.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+.++.+||++|+...+..|..+|.+++++|||+|.++          .+++.++.+.+..++++..+.+       .
T Consensus        55 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~----------~~~~~~~~~~l~~~~~~~~~~~-------~  117 (174)
T cd04153          55 VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTD----------RERLPLTKEELYKMLAHEDLRK-------A  117 (174)
T ss_pred             EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhhcC-------C
Confidence            4557889999999999889999999999999999999987          3567888888888888765555       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++++| +|+..
T Consensus       118 p~viv~NK~Dl~~  130 (174)
T cd04153         118 VLLVLANKQDLKG  130 (174)
T ss_pred             CEEEEEECCCCCC
Confidence            9999998 99863

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.67  E-value=1.3e-07  Score=81.02  Aligned_cols=71  Identities=14%  Similarity=0.198  Sum_probs=52.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++||...+..|..++.+++++|+|+|+++          ...+++....+..+.......+       .|+++
T Consensus        48 ~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii~  110 (164)
T smart00173       48 CLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD----------RQSFEEIKKFREQILRVKDRDD-------VPIVL  110 (164)
T ss_pred             EEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            578899999999888999999999999999999986          2334444444454443221122       78898


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       111 v~nK~Dl~~  119 (164)
T smart00173      111 VGNKCDLES  119 (164)
T ss_pred             EEECccccc
Confidence            898 99873

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=9.2e-09  Score=89.19  Aligned_cols=74  Identities=22%  Similarity=0.435  Sum_probs=69.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++++|..+|.||...-|+-|..||-.|++|+|.||..|          ..|+.||+...+.+++...+++       .
T Consensus        60 ~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d----------~er~~es~~eld~ll~~e~la~-------v  122 (193)
T KOG0077|consen   60 SIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYD----------QERFAESKKELDALLSDESLAT-------V  122 (193)
T ss_pred             eecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhh----------HHHhHHHHHHHHHHHhHHHHhc-------C
Confidence            5788999999999999999999999999999999999988          5899999999999999998888       8


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++..| +|+.
T Consensus       123 p~lilgnKId~p  134 (193)
T KOG0077|consen  123 PFLILGNKIDIP  134 (193)
T ss_pred             cceeecccccCC
Confidence            9999999 9986

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.65  E-value=1.7e-07  Score=79.76  Aligned_cols=72  Identities=11%  Similarity=0.152  Sum_probs=52.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+||......|..++.+++++++|+|+++          ...+......+..+.......+       .|++
T Consensus        47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~pii  109 (164)
T cd04139          47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD----------MESFTATAEFREQILRVKDDDN-------VPLL  109 (164)
T ss_pred             EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence            4578999999998888889999999999999999885          2334444444444444322223       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       110 iv~NK~D~~~  119 (164)
T cd04139         110 LVGNKCDLED  119 (164)
T ss_pred             EEEEcccccc
Confidence            8888 99974

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04125 RabA_like RabA-like subfamily

Probab=98.65  E-value=1.5e-07  Score=83.14  Aligned_cols=70  Identities=11%  Similarity=0.147  Sum_probs=49.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++|+...+..|..++.+++++|||+|+++-          ..+......+..+.... -.       ..|+++
T Consensus        49 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~i~~~~~~i~~~~-~~-------~~~~iv  110 (188)
T cd04125          49 IKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQ----------ESFENLKFWINEINRYA-RE-------NVIKVI  110 (188)
T ss_pred             EEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CC-------CCeEEE
Confidence            5689999999988888999999999999999999862          22333333333332211 01       167888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       111 v~nK~Dl~~  119 (188)
T cd04125         111 VANKSDLVN  119 (188)
T ss_pred             EEECCCCcc
Confidence            888 99873

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04151 Arl1 Arl1 subfamily

Probab=98.65  E-value=5.8e-08  Score=83.17  Aligned_cols=74  Identities=18%  Similarity=0.346  Sum_probs=59.9

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+.++++||++|+...+..|..++.+++++|||+|+++.          .++....+.+..+++...+.+       .
T Consensus        39 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~  101 (158)
T cd04151          39 TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR----------DRLGTAKEELHAMLEEEELKG-------A  101 (158)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchhhcC-------C
Confidence            34567899999999998999999999999999999999873          445556666666666555555       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |++|++| +|+.
T Consensus       102 piiiv~nK~Dl~  113 (158)
T cd04151         102 VLLVFANKQDMP  113 (158)
T ss_pred             cEEEEEeCCCCC
Confidence            9999998 9986

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01861 Rab6 Rab6 subfamily

Probab=98.63  E-value=1.5e-07  Score=80.36  Aligned_cols=69  Identities=16%  Similarity=0.136  Sum_probs=53.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++          .+.+.+....+..+..... .+       .|+++
T Consensus        49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~-------~~iil  110 (161)
T cd01861          49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN----------RQSFDNTDKWIDDVRDERG-ND-------VIIVL  110 (161)
T ss_pred             EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CC-------CEEEE
Confidence            468999999998888899999999999999999986          3456665566665543211 13       78999


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       111 v~nK~D~~  118 (161)
T cd01861         111 VGNKTDLS  118 (161)
T ss_pred             EEEChhcc
Confidence            998 9996

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04123 Rab21 Rab21 subfamily

Probab=98.63  E-value=2e-07  Score=79.10  Aligned_cols=71  Identities=8%  Similarity=0.080  Sum_probs=51.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.++++++||+|+++-          +.+.+....++.+..... .+       .|+++
T Consensus        49 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~-------~piii  110 (162)
T cd04123          49 IDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDA----------DSFQKVKKWIKELKQMRG-NN-------ISLVI  110 (162)
T ss_pred             EEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CC-------CeEEE
Confidence            4689999999988888899999999999999999873          344444444444432111 12       68888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|+...
T Consensus       111 v~nK~D~~~~  120 (162)
T cd04123         111 VGNKIDLERQ  120 (162)
T ss_pred             EEECcccccc
Confidence            888 998843

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=98.62  E-value=7.5e-08  Score=82.78  Aligned_cols=84  Identities=19%  Similarity=0.353  Sum_probs=68.7

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|+....+      .+.+..+.+||++|+...+..|..+|.+++++|||+|.++.          ..+.+....+..++
T Consensus        37 t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~----------~~~~~~~~~~~~~~  100 (167)
T cd04160          37 TVGLNIGTI------EVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDR----------ERFEESKSALEKVL  100 (167)
T ss_pred             ccccceEEE------EECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchH----------HHHHHHHHHHHHHH
Confidence            445555555      45678999999999999899999999999999999999863          45788888888888


Q ss_pred             cCccccCccccCCceeEEEEec-cCccC
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      ......+       .|+++++| +|+..
T Consensus       101 ~~~~~~~-------~p~ilv~NK~D~~~  121 (167)
T cd04160         101 RNEALEG-------VPLLILANKQDLPD  121 (167)
T ss_pred             hChhhcC-------CCEEEEEEcccccc
Confidence            8766556       79999999 99874

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=98.62  E-value=7.7e-08  Score=84.91  Aligned_cols=74  Identities=22%  Similarity=0.413  Sum_probs=63.4

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+.++.+||++|+...+..|.+++.+++++|||+|+++          .+++.++...+..++......+       .
T Consensus        59 ~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~  121 (190)
T cd00879          59 TIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAAD----------PERFQESKEELDSLLSDEELAN-------V  121 (190)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCc----------HHHHHHHHHHHHHHHcCccccC-------C
Confidence            4557789999999998888999999999999999999986          3667788888899887665555       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       122 pvivv~NK~Dl~  133 (190)
T cd00879         122 PFLILGNKIDLP  133 (190)
T ss_pred             CEEEEEeCCCCC
Confidence            9999998 9986

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04112 Rab26 Rab26 subfamily

Probab=98.62  E-value=1.8e-07  Score=83.24  Aligned_cols=69  Identities=12%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++||...+..|..++.+++++|+|+|+++-          +.+++....+..+.... -.+       .|+++
T Consensus        50 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piii  111 (191)
T cd04112          50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNK----------ASFDNIRAWLTEIKEYA-QED-------VVIML  111 (191)
T ss_pred             EEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCC-------CcEEE
Confidence            5688999999988888899999999999999999862          33444444444443311 112       78999


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       112 v~NK~Dl~  119 (191)
T cd04112         112 LGNKADMS  119 (191)
T ss_pred             EEEcccch
Confidence            998 9986

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04154 Arl2 Arl2 subfamily

Probab=98.59  E-value=1e-07  Score=83.05  Aligned_cols=75  Identities=21%  Similarity=0.365  Sum_probs=61.7

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||++||...+..|.++|.+++++|||+|.++          ..++.+....+..++......+       .
T Consensus        54 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  116 (173)
T cd04154          54 EYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSD----------RLRLDDCKRELKELLQEERLAG-------A  116 (173)
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhhcC-------C
Confidence            3446789999999999888899999999999999999987          3567777778888877554444       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++++| +|+..
T Consensus       117 p~iiv~nK~Dl~~  129 (173)
T cd04154         117 TLLILANKQDLPG  129 (173)
T ss_pred             CEEEEEECccccc
Confidence            8999998 99873

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.58  E-value=3e-07  Score=78.49  Aligned_cols=71  Identities=7%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC----ccccCccccCCc
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ----PCFEVFFCATSA  295 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~----~~f~~~~~~~~~  295 (341)
                      ...+.+||++|+...+..|.+++.+++++|+|+|+++-          +.+++....++.+...    ....+       
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~-------  110 (168)
T cd04119          48 EVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDR----------QSFEALDSWLKEMKQEGGPHGNMEN-------  110 (168)
T ss_pred             EEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhccccccCCC-------
Confidence            35789999999988888899999999999999999972          2333333333333221    11122       


Q ss_pred             eeEEEEec-cCcc
Q 019426          296 LHITAFVA-CEHV  307 (341)
Q Consensus       296 ~~iilf~n-~d~~  307 (341)
                      .|+++.+| +|+.
T Consensus       111 ~piilv~nK~Dl~  123 (168)
T cd04119         111 IVVVVCANKIDLT  123 (168)
T ss_pred             ceEEEEEEchhcc
Confidence            78888888 9987

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.57  E-value=3.7e-07  Score=78.57  Aligned_cols=69  Identities=13%  Similarity=0.237  Sum_probs=51.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++          .+.+.+....++.+-... -.+       .|+++
T Consensus        51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~l~~~~~~~~~~~-~~~-------~~~ii  112 (166)
T cd01869          51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLQEIDRYA-SEN-------VNKLL  112 (166)
T ss_pred             EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC----------HHHHHhHHHHHHHHHHhC-CCC-------CcEEE
Confidence            468899999998888899999999999999999987          234555555554443211 112       68888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       113 v~nK~Dl~  120 (166)
T cd01869         113 VGNKCDLT  120 (166)
T ss_pred             EEEChhcc
Confidence            888 9986

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=98.55  E-value=3.3e-07  Score=80.04  Aligned_cols=70  Identities=14%  Similarity=0.100  Sum_probs=58.0

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|.++.          ..+++....+..+++.....+       .|+++
T Consensus        49 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~p~il  111 (180)
T cd04137          49 YHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSR----------KSFEVVKVIYDKILDMLGKES-------VPIVL  111 (180)
T ss_pred             EEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            3578999999998888999999999999999999973          567788888888887543333       68899


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       112 v~NK~Dl~  119 (180)
T cd04137         112 VGNKSDLH  119 (180)
T ss_pred             EEEchhhh
Confidence            998 9986

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.54  E-value=2e-07  Score=82.37  Aligned_cols=72  Identities=18%  Similarity=0.313  Sum_probs=58.6

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      .+..+.+||++|+...+..|..++.+++++|||+|+++.          +++.++...+..+.......+       .|+
T Consensus        50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~~~~~~~~~~~~i~~~~~~~~-------~p~  112 (183)
T cd04152          50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV----------ERMEEAKTELHKITRFSENQG-------VPV  112 (183)
T ss_pred             CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhhhhcCC-------CcE
Confidence            467899999999988889999999999999999999873          567777777777766433334       788


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      ++.+| +|+.
T Consensus       113 iiv~NK~D~~  122 (183)
T cd04152         113 LVLANKQDLP  122 (183)
T ss_pred             EEEEECcCcc
Confidence            98888 9986

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04177 RSR1 RSR1 subgroup

Probab=98.54  E-value=5e-07  Score=78.19  Aligned_cols=71  Identities=10%  Similarity=0.059  Sum_probs=52.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++-          .-++.....++.+.....-.+       .|+++
T Consensus        49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piii  111 (168)
T cd04177          49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE----------ASLNELGELREQVLRIKDSDN-------VPMVL  111 (168)
T ss_pred             EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhCCCC-------CCEEE
Confidence            5789999999999999999999999999999999972          234444444444443221122       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       112 v~nK~D~~~  120 (168)
T cd04177         112 VGNKADLED  120 (168)
T ss_pred             EEEChhccc
Confidence            888 99873

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.53  E-value=4.6e-07  Score=77.26  Aligned_cols=70  Identities=11%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+......|..++.+++++|+|+|+++          .+.+++.......+..... .+       .|+++
T Consensus        49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~l~~~~~~~~-~~-------~pivv  110 (164)
T smart00175       49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN----------RESFENLKNWLKELREYAD-PN-------VVIML  110 (164)
T ss_pred             EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC-CC-------CeEEE
Confidence            467899999998777889999999999999999986          2445554444444333211 12       79999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       111 v~nK~D~~~  119 (164)
T smart00175      111 VGNKSDLED  119 (164)
T ss_pred             EEEchhccc
Confidence            998 99863

Rab GTPases are implicated in vesicle trafficking.

>cd04134 Rho3 Rho3 subfamily

Probab=98.53  E-value=6.3e-07  Score=79.62  Aligned_cols=70  Identities=10%  Similarity=0.235  Sum_probs=50.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH-HHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ..+.+||++||...+..|..+|.+++++|+|.|+++-          +-++.... .+..+...  ..+       .|++
T Consensus        48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~----------~sf~~~~~~~~~~i~~~--~~~-------~pii  108 (189)
T cd04134          48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSP----------DSLENVESKWLGEIREH--CPG-------VKLV  108 (189)
T ss_pred             EEEEEEECCCChhccccccccccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCC-------CCEE
Confidence            5789999999988888899999999999999999972          22332222 22333221  112       7899


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |.+| +|+...
T Consensus       109 lvgNK~Dl~~~  119 (189)
T cd04134         109 LVALKCDLREA  119 (189)
T ss_pred             EEEEChhhccC
Confidence            9999 998743

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.52  E-value=2.6e-07  Score=75.16  Aligned_cols=69  Identities=16%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+......|...+.+++++|+|.|+++.          .-+++..+++..+.+.....      ...|++|
T Consensus        50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~----------~s~~~~~~~~~~l~~~~~~~------~~~piil  113 (119)
T PF08477_consen   50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDP----------ESLEYLSQLLKWLKNIRKRD------KNIPIIL  113 (119)
T ss_dssp             EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGH----------HHHHHHHHHHHHHHHHHHHS------SCSEEEE
T ss_pred             eEEEEEecCccceecccccchhhcCcEEEEEEcCCCh----------HHHHHHHHHHHHHHHHHccC------CCCCEEE
Confidence            3488999999977777777778999999999999973          33555555555554433211      1289999


Q ss_pred             Eec-cC
Q 019426          301 FVA-CE  305 (341)
Q Consensus       301 f~n-~d  305 (341)
                      .+| .|
T Consensus       114 v~nK~D  119 (119)
T PF08477_consen  114 VGNKSD  119 (119)
T ss_dssp             EEE-TC
T ss_pred             EEeccC
Confidence            888 65

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=98.51  E-value=2.7e-07  Score=78.68  Aligned_cols=71  Identities=18%  Similarity=0.349  Sum_probs=61.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|.++.          +++.+....+..++..+.+.+       .|++
T Consensus        43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~pii  105 (160)
T cd04156          43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE----------ARLDESQKELKHILKNEHIKG-------VPVV  105 (160)
T ss_pred             ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHhchhhcC-------CCEE
Confidence            46899999999998889999999999999999999873          578888888888888766556       8999


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +++| +|+.
T Consensus       106 lv~nK~Dl~  114 (160)
T cd04156         106 LLANKQDLP  114 (160)
T ss_pred             EEEECcccc
Confidence            9998 9985

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=98.47  E-value=4.3e-07  Score=77.42  Aligned_cols=85  Identities=24%  Similarity=0.405  Sum_probs=69.5

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      +|.|+....+      .+.+..+.+||++|+...+..|..++.++++++||+|.++          ..++.++...+..+
T Consensus        29 ~t~~~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~----------~~~~~~~~~~~~~~   92 (158)
T cd00878          29 PTIGFNVETV------EYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSD----------RERIEEAKEELHKL   92 (158)
T ss_pred             CCcCcceEEE------EECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence            3445555555      5567889999999999888899999999999999999996          45899999999999


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccC
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      +......+       .|+++++| +|+..
T Consensus        93 ~~~~~~~~-------~piiiv~nK~D~~~  114 (158)
T cd00878          93 LNEEELKG-------VPLLIFANKQDLPG  114 (158)
T ss_pred             HhCcccCC-------CcEEEEeeccCCcc
Confidence            88654444       79999998 99874

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04113 Rab4 Rab4 subfamily

Probab=98.41  E-value=1.6e-06  Score=74.07  Aligned_cols=70  Identities=9%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|.+++.+++++|+|+|+++-          ..+......+..+.... -.+       .|+++
T Consensus        49 ~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~~iiv  110 (161)
T cd04113          49 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNR----------TSFEALPTWLSDARALA-SPN-------IVVIL  110 (161)
T ss_pred             EEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCC-------CeEEE
Confidence            4688999999988888899999999999999999973          22333333333332111 012       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       111 v~nK~D~~~  119 (161)
T cd04113         111 VGNKSDLAD  119 (161)
T ss_pred             EEEchhcch
Confidence            888 99874

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04159 Arl10_like Arl10-like subfamily

Probab=98.41  E-value=8.6e-07  Score=74.38  Aligned_cols=86  Identities=19%  Similarity=0.350  Sum_probs=66.6

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|+....+      ..++..+.+||++|+...+..|..++.++++++||+|+++.          ..+......+..+
T Consensus        30 ~t~~~~~~~~------~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~   93 (159)
T cd04159          30 PTVGFNMRKV------TKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR----------TALEAAKNELHDL   93 (159)
T ss_pred             CCCCcceEEE------EECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHH
Confidence            5666655555      45568899999999999999999999999999999999873          3456666677777


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccCc
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      +....+.+       .|+++++| +|+...
T Consensus        94 ~~~~~~~~-------~p~iiv~nK~D~~~~  116 (159)
T cd04159          94 LEKPSLEG-------IPLLVLGNKNDLPGA  116 (159)
T ss_pred             HcChhhcC-------CCEEEEEeCccccCC
Confidence            76554444       78888888 998743

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd00876 Ras Ras family

Probab=98.41  E-value=1.5e-06  Score=73.52  Aligned_cols=71  Identities=15%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+......|..++.+++++|+|+|+++-          ..+.+....+..+.+...-..       .|+++
T Consensus        47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~iv  109 (160)
T cd00876          47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDR----------ESFEEIKGYREQILRVKDDED-------IPIVL  109 (160)
T ss_pred             EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CcEEE
Confidence            5688999999988888888999999999999998862          345555666666655322123       78999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       110 v~nK~D~~~  118 (160)
T cd00876         110 VGNKCDLEN  118 (160)
T ss_pred             EEECCcccc
Confidence            998 99884

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.35  E-value=1.5e-06  Score=78.21  Aligned_cols=73  Identities=14%  Similarity=0.124  Sum_probs=57.6

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +++.+||++||...|..|..|+.+++++++|+|..+          ..+..+....+...+....-..       .|+++
T Consensus        54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~----------~~~~~~~~~~~~~~l~~~~~~~-------~~iil  116 (219)
T COG1100          54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL----------RESSDELTEEWLEELRELAPDD-------VPILL  116 (219)
T ss_pred             EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc----------chhhhHHHHHHHHHHHHhCCCC-------ceEEE
Confidence            468999999999999999999999999999999987          3667777777665554322122       78888


Q ss_pred             Eec-cCccCcc
Q 019426          301 FVA-CEHVSGM  310 (341)
Q Consensus       301 f~n-~d~~~~~  310 (341)
                      ..| +|++...
T Consensus       117 v~nK~Dl~~~~  127 (219)
T COG1100         117 VGNKIDLFDEQ  127 (219)
T ss_pred             Eecccccccch
Confidence            888 9998443

>PTZ00099 rab6; Provisional

Probab=98.32  E-value=1.7e-06  Score=76.55  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=56.2

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ..+.+.+||++||...+..|..+|.+++++|+|+|+++          ...+++....+..+..... .+       .||
T Consensus        27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~----------~~sf~~~~~w~~~i~~~~~-~~-------~pi   88 (176)
T PTZ00099         27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN----------RQSFENTTKWIQDILNERG-KD-------VII   88 (176)
T ss_pred             EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcC-CC-------CeE
Confidence            34789999999999999999999999999999999997          3456666666666655321 22       788


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|.+| +|+.
T Consensus        89 ilVgNK~DL~   98 (176)
T PTZ00099         89 ALVGNKTDLG   98 (176)
T ss_pred             EEEEECcccc
Confidence            89998 9986

>cd04120 Rab12 Rab12 subfamily

Probab=98.29  E-value=1.7e-06  Score=78.37  Aligned_cols=70  Identities=10%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..|..||.+++++|+|+|+++          ...+++.....+ .++.....+       .||+
T Consensus        48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd----------~~Sf~~l~~w~~-~i~~~~~~~-------~pii  109 (202)
T cd04120          48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK----------KETFDDLPKWMK-MIDKYASED-------AELL  109 (202)
T ss_pred             EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHH-HHHHhCCCC-------CcEE
Confidence            3788999999999999999999999999999999997          345555544333 333222223       7899


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+.
T Consensus       110 lVgNK~DL~  118 (202)
T cd04120         110 LVGNKLDCE  118 (202)
T ss_pred             EEEECcccc
Confidence            9999 9985

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd00157 Rho Rho (Ras homology) family

Probab=98.26  E-value=6.7e-06  Score=70.61  Aligned_cols=72  Identities=13%  Similarity=0.161  Sum_probs=48.4

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++||......+..++..++++++|+|.++-          ..+.+....|-..+.... .+       .|+++
T Consensus        48 ~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~p~iv  109 (171)
T cd00157          48 VNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSP----------SSFENVKTKWIPEIRHYC-PN-------VPIIL  109 (171)
T ss_pred             EEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhC-CC-------CCEEE
Confidence            4678999999976666667778999999999998862          234444443333222111 13       78888


Q ss_pred             Eec-cCccCcc
Q 019426          301 FVA-CEHVSGM  310 (341)
Q Consensus       301 f~n-~d~~~~~  310 (341)
                      .+| +|+....
T Consensus       110 v~nK~Dl~~~~  120 (171)
T cd00157         110 VGTKIDLRDDE  120 (171)
T ss_pred             EEccHHhhhch
Confidence            888 9988443

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.26  E-value=2.7e-06  Score=69.52  Aligned_cols=72  Identities=15%  Similarity=0.178  Sum_probs=50.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+......|..++.+++++|||+|+++.          ..+.+....+........-.+       .|+++
T Consensus        45 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~-------~~~iv  107 (157)
T cd00882          45 VKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR----------ESFENVKEWLLLILINKEGEN-------IPIIL  107 (157)
T ss_pred             EEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhhccCC-------CcEEE
Confidence            5689999999998889999999999999999999972          233333333222222222222       67888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|+...
T Consensus       108 v~nk~D~~~~  117 (157)
T cd00882         108 VGNKIDLPEE  117 (157)
T ss_pred             EEeccccccc
Confidence            887 998743

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04129 Rho2 Rho2 subfamily

Probab=98.15  E-value=1.7e-05  Score=70.21  Aligned_cols=69  Identities=9%  Similarity=0.072  Sum_probs=45.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||.+|+...+..+..++.+++++++|.|+++.          ..+++....|...+.. ...+       .||+|
T Consensus        49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~----------~s~~~~~~~~~~~i~~-~~~~-------~piil  110 (187)
T cd04129          49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTP----------DSLENVRTKWIEEVRR-YCPN-------VPVIL  110 (187)
T ss_pred             EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEEE
Confidence            3578999999976665565678899999999998762          2333333333333321 1122       78888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      ..| +|+.
T Consensus       111 vgnK~Dl~  118 (187)
T cd04129         111 VGLKKDLR  118 (187)
T ss_pred             EeeChhhh
Confidence            888 9975

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04136 Rap_like Rap-like subfamily

Probab=98.13  E-value=8.6e-06  Score=69.36  Aligned_cols=72  Identities=10%  Similarity=0.156  Sum_probs=55.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++++|+|+++          ...+++....++.+.......+       .|++
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii  110 (163)
T cd04136          48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS----------QSSFNDLQDLREQILRVKDTEN-------VPMV  110 (163)
T ss_pred             EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence            3568899999999999999999999999999999987          2445566666666654322223       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       111 lv~nK~Dl~~  120 (163)
T cd04136         111 LVGNKCDLED  120 (163)
T ss_pred             EEEECccccc
Confidence            8888 99863

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04176 Rap2 Rap2 subgroup

Probab=98.12  E-value=7.8e-06  Score=69.95  Aligned_cols=70  Identities=11%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|.|+++          ...+++....++.+.......+       .|++|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~pivi  111 (163)
T cd04176          49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN----------QQTFQDIKPMRDQIVRVKGYEK-------VPIIL  111 (163)
T ss_pred             EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            468899999999999999999999999999999997          3456666665565654332233       78888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       112 v~nK~Dl~  119 (163)
T cd04176         112 VGNKVDLE  119 (163)
T ss_pred             EEECccch
Confidence            888 9975

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.08  E-value=1.3e-05  Score=71.84  Aligned_cols=75  Identities=9%  Similarity=0.105  Sum_probs=54.6

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ..+.+.+||++|+...+..|..+|.+++++|+|+|+++          ...++++...+..+.+.-.+.    ...-.|+
T Consensus        48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~----------~~s~~~~~~~~~~i~~~~~~~----~~~~~pi  113 (201)
T cd04107          48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR----------PSTFEAVLKWKADLDSKVTLP----NGEPIPC  113 (201)
T ss_pred             CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhccc----CCCCCcE
Confidence            35678999999998888899999999999999999987          355666654444443211110    0122789


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|++| +|+.
T Consensus       114 ilv~NK~Dl~  123 (201)
T cd04107         114 LLLANKCDLK  123 (201)
T ss_pred             EEEEECCCcc
Confidence            99998 9986

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01878 HflX HflX subfamily

Probab=98.07  E-value=5.1e-05  Score=67.84  Aligned_cols=41  Identities=27%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             HHHhcHHHHHHHHHHHHHh-----hcccceEEeccCCCcchhHHHH
Q 019426           26 ENAQTAEIERRIEQETKAE-----KHIQKLLLLGAGESGKSTIFKQ   66 (341)
Q Consensus        26 ~~~~s~~Id~~L~~~~~~~-----~~~~kiLllG~~eSGKST~~kq   66 (341)
                      .....++|+.-+++.+...     ....+++++|.+|+|||||++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~   60 (204)
T cd01878          15 IAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNA   60 (204)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHH
Confidence            4555667777666644332     2357999999999999999875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01875 RhoG RhoG subfamily

Probab=98.07  E-value=1.1e-05  Score=71.96  Aligned_cols=70  Identities=13%  Similarity=0.128  Sum_probs=53.0

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..|..||.+++++|+|.|+++          ...++.....|...+... ..+       .||+
T Consensus        50 ~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~----------~~Sf~~~~~~w~~~i~~~-~~~-------~pii  111 (191)
T cd01875          50 TVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS----------PSSYENVRHKWHPEVCHH-CPN-------VPIL  111 (191)
T ss_pred             EEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCC-------CCEE
Confidence            4678999999999999999999999999999999997          345655554443322211 123       7999


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+-
T Consensus       112 lvgNK~DL~  120 (191)
T cd01875         112 LVGTKKDLR  120 (191)
T ss_pred             EEEeChhhh
Confidence            9999 9985

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.04  E-value=9.7e-06  Score=73.28  Aligned_cols=70  Identities=9%  Similarity=0.013  Sum_probs=53.0

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ..+++.+||++||...+..|..||.+++++|+|+|+++-          ..++......+.+....  .+       .||
T Consensus        42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~----------~S~~~i~~w~~~i~~~~--~~-------~pi  102 (200)
T smart00176       42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR----------VTYKNVPNWHRDLVRVC--EN-------IPI  102 (200)
T ss_pred             EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh----------HHHHHHHHHHHHHHHhC--CC-------CCE
Confidence            357899999999998899999999999999999999973          34444444333343321  23       799


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|++| +|+.
T Consensus       103 ilvgNK~Dl~  112 (200)
T smart00176      103 VLCGNKVDVK  112 (200)
T ss_pred             EEEEECcccc
Confidence            99999 9975

Ran is involved in the active transport of proteins through nuclear pores.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=98.00  E-value=1.5e-05  Score=72.10  Aligned_cols=75  Identities=15%  Similarity=0.276  Sum_probs=61.0

Q ss_pred             CCceeEEEecCCccccccccccccCCc-cEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGV-SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v-~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      .+..+.+||++|+...|..|..++.++ ++||||+|.++.         .+.+.++...+..++......+     .-.|
T Consensus        46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~---------~~~~~~~~~~l~~il~~~~~~~-----~~~p  111 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF---------QKNLKDVAEFLYDILTDLEKVK-----NKIP  111 (203)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc---------hhHHHHHHHHHHHHHHHHhhcc-----CCCC
Confidence            357899999999999999999999998 999999999984         2567888888877776543321     1279


Q ss_pred             EEEEec-cCcc
Q 019426          298 ITAFVA-CEHV  307 (341)
Q Consensus       298 iilf~n-~d~~  307 (341)
                      ++|++| +|++
T Consensus       112 vliv~NK~Dl~  122 (203)
T cd04105         112 VLIACNKQDLF  122 (203)
T ss_pred             EEEEecchhhc
Confidence            999999 9987

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01871 Rac1_like Rac1-like subfamily

Probab=97.96  E-value=2.6e-05  Score=68.38  Aligned_cols=70  Identities=10%  Similarity=0.094  Sum_probs=51.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++|||.|+++          .+.+.+....|...+... ..+       .|++
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~-~~~-------~pii  109 (174)
T cd01871          48 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS----------PASFENVRAKWYPEVRHH-CPN-------TPII  109 (174)
T ss_pred             EEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence            4678899999999888999999999999999999997          244555443333322221 123       7899


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |++| +|+.
T Consensus       110 lvgnK~Dl~  118 (174)
T cd01871         110 LVGTKLDLR  118 (174)
T ss_pred             EEeeChhhc
Confidence            9998 9986

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PTZ00369 Ras-like protein; Provisional

Probab=97.96  E-value=2.5e-05  Score=69.26  Aligned_cols=71  Identities=10%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++          ...+.+.....+.+.+.....+       .|++
T Consensus        52 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii  114 (189)
T PTZ00369         52 TCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS----------RSSFEEIASFREQILRVKDKDR-------VPMI  114 (189)
T ss_pred             EEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence            4578899999999999999999999999999999997          2345555555555544221122       7899


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |++| +|+.
T Consensus       115 iv~nK~Dl~  123 (189)
T PTZ00369        115 LVGNKCDLD  123 (189)
T ss_pred             EEEECcccc
Confidence            9998 9975

>cd04143 Rhes_like Rhes_like subfamily

Probab=97.96  E-value=2.4e-05  Score=73.01  Aligned_cols=78  Identities=8%  Similarity=-0.014  Sum_probs=57.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc-CccccCCceeEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE-VFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~-~~~~~~~~~~ii  299 (341)
                      +.+.+||++|+...+..|..++.+++++|+|.|+++          ...+++...+++.+....++. ..-....-.|++
T Consensus        48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~----------~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI  117 (247)
T cd04143          48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN----------RESFEEVCRLREQILETKSCLKNKTKENVKIPMV  117 (247)
T ss_pred             EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhhcccccccccCCCCcEE
Confidence            578899999998877778888999999999999996          355777777888887654320 000001127889


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       118 ivgNK~Dl~~  127 (247)
T cd04143         118 ICGNKADRDF  127 (247)
T ss_pred             EEEECccchh
Confidence            9998 99873

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=97.95  E-value=2.3e-05  Score=68.49  Aligned_cols=71  Identities=13%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|.++|.+++++|+|+|+++          ...+......++.+-....-.+       .|++|
T Consensus        50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~----------~~Sf~~~~~~~~~i~~~~~~~~-------~piil  112 (172)
T cd04141          50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD----------RHSFQEASEFKKLITRVRLTED-------IPLVL  112 (172)
T ss_pred             EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc----------hhHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            578999999999899999999999999999999987          3455555543333322111122       78999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       113 vgNK~Dl~~  121 (172)
T cd04141         113 VGNKVDLES  121 (172)
T ss_pred             EEEChhhhh
Confidence            999 99863

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01860 Rab5_related Rab5-related subfamily

Probab=97.95  E-value=2.8e-05  Score=66.23  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      ..+..+.+||++|+...+..|.+++.+++++|||+|.++          ...+..+...+..+..... .+       .|
T Consensus        47 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~-------~~  108 (163)
T cd01860          47 DTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS----------EESFEKAKSWVKELQRNAS-PN-------II  108 (163)
T ss_pred             CEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhCC-CC-------Ce
Confidence            345689999999998888899999999999999999986          2446666666666654321 22       78


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++.+| +|+..
T Consensus       109 iivv~nK~D~~~  120 (163)
T cd01860         109 IALVGNKADLES  120 (163)
T ss_pred             EEEEEECccccc
Confidence            888888 99873

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04121 Rab40 Rab40 subfamily

Probab=97.93  E-value=2.7e-05  Score=69.68  Aligned_cols=69  Identities=10%  Similarity=0.042  Sum_probs=55.9

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..|..+|.+++++|+|.|+++          .+.++.....++.+..+  ..+       .|++
T Consensus        54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~----------~~Sf~~~~~w~~~i~~~--~~~-------~pii  114 (189)
T cd04121          54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN----------RWSFDGIDRWIKEIDEH--APG-------VPKI  114 (189)
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHh--CCC-------CCEE
Confidence            3678999999999999999999999999999999997          46677776666666332  123       7999


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+.
T Consensus       115 lVGNK~DL~  123 (189)
T cd04121         115 LVGNRLHLA  123 (189)
T ss_pred             EEEECccch
Confidence            9999 9986

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=97.92  E-value=2.8e-05  Score=71.47  Aligned_cols=71  Identities=10%  Similarity=0.098  Sum_probs=54.2

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..|..+|.+++++|+|.|+++          ...++.....|...+.. ...+       .|++
T Consensus        48 ~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~----------~~Sf~~i~~~w~~~~~~-~~~~-------~pii  109 (222)
T cd04173          48 RIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR----------PETLDSVLKKWQGETQE-FCPN-------AKVV  109 (222)
T ss_pred             EEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHh-hCCC-------CCEE
Confidence            4678999999998888889999999999999999997          24566665555544332 1122       7899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       110 LVgnK~DL~~  119 (222)
T cd04173         110 LVGCKLDMRT  119 (222)
T ss_pred             EEEECccccc
Confidence            9998 99863

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04126 Rab20 Rab20 subfamily

Probab=97.92  E-value=2.9e-05  Score=71.26  Aligned_cols=72  Identities=14%  Similarity=0.088  Sum_probs=55.6

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++||...+..|..+|.+++++|||+|+++          ...+.+....|..+.... ..+       .|+
T Consensus        42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~----------~~Sf~~l~~~~~~l~~~~-~~~-------~pi  103 (220)
T cd04126          42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSN----------VQSLEELEDRFLGLTDTA-NED-------CLF  103 (220)
T ss_pred             eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCC-------CcE
Confidence            34578999999999999999999999999999999997          344566666666665421 122       688


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       104 IlVgNK~DL~~  114 (220)
T cd04126         104 AVVGNKLDLTE  114 (220)
T ss_pred             EEEEECccccc
Confidence            99998 99874

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01874 Cdc42 Cdc42 subfamily

Probab=97.91  E-value=3.8e-05  Score=67.44  Aligned_cols=70  Identities=13%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++||...+..|..+|.+++++|+|.|+++          ...+++....|...+... ..+       .|++|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~w~~~i~~~-~~~-------~piil  110 (175)
T cd01874          49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS----------PSSFENVKEKWVPEITHH-CPK-------TPFLL  110 (175)
T ss_pred             EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-CCC-------CCEEE
Confidence            678899999999888899999999999999999987          234544444333322211 112       79999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       111 vgnK~Dl~~  119 (175)
T cd01874         111 VGTQIDLRD  119 (175)
T ss_pred             EEECHhhhh
Confidence            998 99863

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01892 Miro2 Miro2 subfamily

Probab=97.90  E-value=4.6e-05  Score=66.36  Aligned_cols=68  Identities=9%  Similarity=-0.039  Sum_probs=49.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||+||+...+..|..+|.+++++|||+|.++-          ..++.....++.+...   .+       .|+++
T Consensus        54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~----------~s~~~~~~~~~~~~~~---~~-------~p~ii  113 (169)
T cd01892          54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDP----------KSFSYCAEVYKKYFML---GE-------IPCLF  113 (169)
T ss_pred             EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHhccC---CC-------CeEEE
Confidence            5688999999998888999999999999999998862          2333333333332111   12       78999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       114 v~NK~Dl~~  122 (169)
T cd01892         114 VAAKADLDE  122 (169)
T ss_pred             EEEcccccc
Confidence            998 99863

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=97.90  E-value=4.2e-05  Score=64.70  Aligned_cols=71  Identities=8%  Similarity=0.100  Sum_probs=52.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||.+|+...+..|.+++.+++++++|+|+++-          ..+.+....+..+.......+       .|+++
T Consensus        49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piiv  111 (162)
T cd04138          49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR----------KSFEDIHTYREQIKRVKDSDD-------VPMVL  111 (162)
T ss_pred             EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            4578899999998889999999999999999999862          334444444455544322223       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       112 v~nK~Dl~~  120 (162)
T cd04138         112 VGNKCDLAA  120 (162)
T ss_pred             EEECccccc
Confidence            888 99874

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04127 Rab27A Rab27a subfamily

Probab=97.86  E-value=4.4e-05  Score=66.41  Aligned_cols=71  Identities=11%  Similarity=0.164  Sum_probs=53.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++|||+|+++          ...+.+....+..+.......+       .|++
T Consensus        62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii  124 (180)
T cd04127          62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTN----------EQSFLNVRNWMSQLQTHAYCEN-------PDIV  124 (180)
T ss_pred             EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CcEE
Confidence            4679999999999888899999999999999999986          2344554444444443322223       6788


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +.+| +|+.
T Consensus       125 iv~nK~Dl~  133 (180)
T cd04127         125 LCGNKADLE  133 (180)
T ss_pred             EEEeCccch
Confidence            8888 9986

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04147 Ras_dva Ras-dva subfamily

Probab=97.83  E-value=4.8e-05  Score=67.96  Aligned_cols=71  Identities=11%  Similarity=0.103  Sum_probs=55.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++          ...+++....+..+.......+       .|++|
T Consensus        47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~piil  109 (198)
T cd04147          47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDD----------PESFEEVERLREEILEVKEDKF-------VPIVV  109 (198)
T ss_pred             EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CcEEE
Confidence            578999999998888888889999999999999987          2456666666666665433233       78999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       110 v~NK~Dl~~  118 (198)
T cd04147         110 VGNKADSLE  118 (198)
T ss_pred             EEEcccccc
Confidence            998 99874

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=97.82  E-value=4.5e-05  Score=67.63  Aligned_cols=70  Identities=11%  Similarity=0.150  Sum_probs=49.9

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc--cccCccccCCceeE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEVFFCATSALHI  298 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~--~f~~~~~~~~~~~i  298 (341)
                      +.+.+||++|+...+..|..+|.+++++|||+|+++-          +.++.....++.+.+..  ...+       .|+
T Consensus        47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~-------~pi  109 (190)
T cd04144          47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSR----------STFERVERFREQIQRVKDESAAD-------VPI  109 (190)
T ss_pred             EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhcccCCC-------CCE
Confidence            5689999999988888999999999999999999862          22333333333333211  1122       688


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|.+| +|+.
T Consensus       110 ilvgNK~Dl~  119 (190)
T cd04144         110 MIVGNKCDKV  119 (190)
T ss_pred             EEEEEChhcc
Confidence            88888 9986

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04133 Rop_like Rop subfamily

Probab=97.81  E-value=8.2e-05  Score=65.76  Aligned_cols=90  Identities=13%  Similarity=0.168  Sum_probs=61.2

Q ss_pred             CCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCC
Q 019426          186 ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE  265 (341)
Q Consensus       186 ~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~  265 (341)
                      .+|.||..|....+        ..+      .-..+++.+||++||...+..+..+|.+++++|+|.|+++         
T Consensus        28 ~~~~~Ti~~~~~~~--------~~~------~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~---------   84 (176)
T cd04133          28 TDYIPTVFDNFSAN--------VSV------DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS---------   84 (176)
T ss_pred             CCCCCcceeeeEEE--------EEE------CCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC---------
Confidence            46889887654311        122      2234678999999999988999999999999999999997         


Q ss_pred             CccchHHHHH-HHHHHhcCccccCccccCCceeEEEEec-cCccC
Q 019426          266 QKNRMMETKE-LFDWVLKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       266 ~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                       ...++.... ....+-...  .+       .|++|.+| +|+..
T Consensus        85 -~~Sf~~~~~~w~~~i~~~~--~~-------~piilvgnK~Dl~~  119 (176)
T cd04133          85 -RASYENVLKKWVPELRHYA--PN-------VPIVLVGTKLDLRD  119 (176)
T ss_pred             -HHHHHHHHHHHHHHHHHhC--CC-------CCEEEEEeChhhcc
Confidence             234444422 223332211  12       78999998 99863

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=97.81  E-value=5.5e-05  Score=67.18  Aligned_cols=70  Identities=11%  Similarity=0.100  Sum_probs=50.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..|..+|.+++++|+|.|+++          ...++..+..|...+.. ...+       .|++
T Consensus        52 ~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~----------~~Sf~~~~~~w~~~i~~-~~~~-------~pii  113 (182)
T cd04172          52 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR----------PETLDSVLKKWKGEIQE-FCPN-------TKML  113 (182)
T ss_pred             EEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHH-HCCC-------CCEE
Confidence            4679999999998888889999999999999999987          23344443333322221 1112       6888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+-
T Consensus       114 lVgNK~DL~  122 (182)
T cd04172         114 LVGCKSDLR  122 (182)
T ss_pred             EEeEChhhh
Confidence            8888 9974

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=97.81  E-value=4.8e-05  Score=69.46  Aligned_cols=70  Identities=9%  Similarity=-0.005  Sum_probs=52.4

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ...++.+||++||...+..|..||.+++++|+|+|+++          ...++.....++.+...  ..+       .||
T Consensus        60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~----------~~s~~~i~~w~~~i~~~--~~~-------~pi  120 (219)
T PLN03071         60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CEN-------IPI  120 (219)
T ss_pred             eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC----------HHHHHHHHHHHHHHHHh--CCC-------CcE
Confidence            34789999999999889999999999999999999997          23344333444444321  123       789


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|++| +|+.
T Consensus       121 ilvgNK~Dl~  130 (219)
T PLN03071        121 VLCGNKVDVK  130 (219)
T ss_pred             EEEEEchhhh
Confidence            99998 9975

>cd04117 Rab15 Rab15 subfamily

Probab=97.81  E-value=8.3e-05  Score=64.00  Aligned_cols=72  Identities=10%  Similarity=0.059  Sum_probs=54.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..+|.++++++||+|+++          .+.+++....++.+.+.. ..+       .|++
T Consensus        48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~~-~~~-------~~ii  109 (161)
T cd04117          48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS----------ERSYQHIMKWVSDVDEYA-PEG-------VQKI  109 (161)
T ss_pred             EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCC-------CeEE
Confidence            3678999999998888899999999999999999997          345666555555554321 122       7888


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      +.+| +|+..+
T Consensus       110 lvgnK~Dl~~~  120 (161)
T cd04117         110 LIGNKADEEQK  120 (161)
T ss_pred             EEEECcccccc
Confidence            8898 998643

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=97.78  E-value=7.9e-05  Score=64.04  Aligned_cols=70  Identities=7%  Similarity=0.069  Sum_probs=49.5

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+...+..|..++.+++++|+|+|+++-          .-..+....++.+...  ..+       .|+
T Consensus        47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~-------~p~  107 (161)
T cd04124          47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRK----------ITYKNLSKWYEELREY--RPE-------IPC  107 (161)
T ss_pred             EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCC-------CcE
Confidence            456789999999998889999999999999999998862          1122222222333221  112       688


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      ++++| +|+.
T Consensus       108 ivv~nK~Dl~  117 (161)
T cd04124         108 IVVANKIDLD  117 (161)
T ss_pred             EEEEECccCc
Confidence            99998 9975

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=97.77  E-value=6.9e-05  Score=65.00  Aligned_cols=70  Identities=9%  Similarity=0.046  Sum_probs=52.4

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++||......|.++|.+++++|+|+|+++          .+.++.....++.+.+...  +       .|+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~--~-------~pi  107 (166)
T cd00877          47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS----------RVTYKNVPNWHRDLVRVCG--N-------IPI  107 (166)
T ss_pred             EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhCC--C-------CcE
Confidence            44688999999998877888899999999999999986          2344444444444443221  3       789


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      ++++| +|+.
T Consensus       108 iiv~nK~Dl~  117 (166)
T cd00877         108 VLCGNKVDIK  117 (166)
T ss_pred             EEEEEchhcc
Confidence            99998 9986

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=97.76  E-value=0.00011  Score=63.91  Aligned_cols=69  Identities=12%  Similarity=0.120  Sum_probs=50.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH-HHHhcCccccCccccCCceeE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF-DWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF-~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ...+.+||++||...+..|..++.+++++|||.|+++          ...++.....| ..+...  ..+       .|+
T Consensus        47 ~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~----------~~sf~~~~~~~~~~~~~~--~~~-------~pi  107 (173)
T cd04130          47 PVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN----------PSSFQNISEKWIPEIRKH--NPK-------API  107 (173)
T ss_pred             EEEEEEEECCCChhhccccccccCCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCC-------CCE
Confidence            3578999999998888889999999999999999987          23444443333 233221  122       688


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      ++.+| +|+.
T Consensus       108 ilv~nK~Dl~  117 (173)
T cd04130         108 ILVGTQADLR  117 (173)
T ss_pred             EEEeeChhhc
Confidence            88888 9986

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=97.75  E-value=8.1e-05  Score=64.20  Aligned_cols=71  Identities=13%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+......|..++.+++++|||.|+++          ...+.+....+..+.... -.+       .|++
T Consensus        51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~~-------~p~i  112 (167)
T cd01867          51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD----------EKSFENIRNWMRNIEEHA-SED-------VERM  112 (167)
T ss_pred             EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHhHHHHHHHHHHhC-CCC-------CcEE
Confidence            3578999999998888889999999999999999876          122444344444443211 112       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       113 iv~nK~Dl~~  122 (167)
T cd01867         113 LVGNKCDMEE  122 (167)
T ss_pred             EEEECccccc
Confidence            8888 99873

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=97.73  E-value=8.3e-05  Score=63.29  Aligned_cols=71  Identities=7%  Similarity=0.142  Sum_probs=53.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++++|+|+++          ...+++....+..+.+...-.+       .|++|
T Consensus        50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~piii  112 (164)
T cd04145          50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD----------RGSFEEVDKFHTQILRVKDRDE-------FPMIL  112 (164)
T ss_pred             EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCC-------CCEEE
Confidence            578899999998888889999999999999999987          2345555555555554321122       78999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       113 v~NK~Dl~~  121 (164)
T cd04145         113 VGNKADLEH  121 (164)
T ss_pred             EeeCccccc
Confidence            998 99863

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04103 Centaurin_gamma Centaurin gamma

Probab=97.69  E-value=0.00013  Score=62.99  Aligned_cols=65  Identities=14%  Similarity=0.164  Sum_probs=51.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++||..     ..++.+++++|+|.|+++          .+.+++....++.+.+.....+       .|++|
T Consensus        47 ~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~i~~~~~~~~-------~piil  104 (158)
T cd04103          47 HLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN----------EASFQTVYNLYHQLSSYRNISE-------IPLIL  104 (158)
T ss_pred             EEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            5689999999953     346788999999999998          5778888888888876543344       78999


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       105 vgnK~Dl~  112 (158)
T cd04103         105 VGTQDAIS  112 (158)
T ss_pred             EeeHHHhh
Confidence            999 6763

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN00023 GTP-binding protein; Provisional

Probab=97.68  E-value=0.00013  Score=70.76  Aligned_cols=78  Identities=13%  Similarity=0.102  Sum_probs=52.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc-----CccccCC
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE-----VFFCATS  294 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~-----~~~~~~~  294 (341)
                      .+.+.+||++||...+..|..||.+++++|+|.|+++-          ..++.....++.+.....+.     .-... .
T Consensus        82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr----------~SFenL~kWl~eI~~~~~~s~p~~s~~~~~-~  150 (334)
T PLN00023         82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR----------RTKTSLQKWASEVAATGTFSAPLGSGGPGG-L  150 (334)
T ss_pred             eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcccccccccccccC-C
Confidence            46799999999999999999999999999999999972          22333333344444321110     00000 1


Q ss_pred             ceeEEEEec-cCccC
Q 019426          295 ALHITAFVA-CEHVS  308 (341)
Q Consensus       295 ~~~iilf~n-~d~~~  308 (341)
                      -.||+|.+| +|+..
T Consensus       151 ~ipIILVGNK~DL~~  165 (334)
T PLN00023        151 PVPYIVIGNKADIAP  165 (334)
T ss_pred             CCcEEEEEECccccc
Confidence            268899999 99863

>cd04116 Rab9 Rab9 subfamily

Probab=97.68  E-value=0.00013  Score=62.78  Aligned_cols=75  Identities=8%  Similarity=0.100  Sum_probs=50.4

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++||...+..|..+|.+++++|+|.|+++-          ..++........+........    ....|+
T Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~----~~~~pi  117 (170)
T cd04116          52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDS----------QSFQNLSNWKKEFIYYADVKE----PESFPF  117 (170)
T ss_pred             eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhccccc----CCCCcE
Confidence            346789999999988889999999999999999998862          223222222233332211100    012788


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|.+| +|+.
T Consensus       118 ilv~nK~Dl~  127 (170)
T cd04116         118 VVLGNKNDIP  127 (170)
T ss_pred             EEEEECcccc
Confidence            98898 9986

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=97.67  E-value=0.00013  Score=67.63  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=50.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..|..||.+++++|+|.|+++-          +.++..+..|...+... ..+       .|++
T Consensus        60 ~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~----------~Sf~~~~~~w~~~i~~~-~~~-------~pii  121 (232)
T cd04174          60 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP----------ETVDSALKKWKAEIMDY-CPS-------TRIL  121 (232)
T ss_pred             EEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCCh----------HHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence            46899999999988888899999999999999999972          34444433333222211 012       6888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+-
T Consensus       122 lVgNK~DL~  130 (232)
T cd04174         122 LIGCKTDLR  130 (232)
T ss_pred             EEEECcccc
Confidence            8888 9974

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04131 Rnd Rnd subfamily

Probab=97.66  E-value=0.00015  Score=64.02  Aligned_cols=70  Identities=11%  Similarity=0.085  Sum_probs=50.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..+..+|.+++++|+|.|+++          ...++..+..|...+... ..+       .|++
T Consensus        48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~----------~~Sf~~~~~~w~~~i~~~-~~~-------~~ii  109 (178)
T cd04131          48 RIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR----------PETLDSVLKKWRGEIQEF-CPN-------TKVL  109 (178)
T ss_pred             EEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHH-CCC-------CCEE
Confidence            4678999999998888888889999999999999987          233444433333322211 012       6889


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+.
T Consensus       110 lVgnK~DL~  118 (178)
T cd04131         110 LVGCKTDLR  118 (178)
T ss_pred             EEEEChhhh
Confidence            9998 9975

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01862 Rab7 Rab7 subfamily

Probab=97.66  E-value=0.00017  Score=61.88  Aligned_cols=71  Identities=11%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC---ccccCccccCCce
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEVFFCATSAL  296 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~---~~f~~~~~~~~~~  296 (341)
                      ...+.+||++|+......|..++.+++++|||+|+++-          ..+++....++.+...   ....+       .
T Consensus        48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~-------~  110 (172)
T cd01862          48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP----------KSFESLDSWRDEFLIQASPSDPEN-------F  110 (172)
T ss_pred             EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCccCCCC-------c
Confidence            35688999999988888999999999999999998851          2333333333333221   11123       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       111 p~ilv~nK~Dl~  122 (172)
T cd01862         111 PFVVLGNKIDLE  122 (172)
T ss_pred             eEEEEEECcccc
Confidence            8888888 9998

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=8.2e-05  Score=66.54  Aligned_cols=87  Identities=18%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             ccccCeEEE--EeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH
Q 019426          200 VRTTGVVEI--QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF  277 (341)
Q Consensus       200 ~~T~Gi~e~--~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF  277 (341)
                      ..|.||.-.  .+..    .-..+++.+||..||...|..-.+||.++++||||-|+++                 ..-|
T Consensus        39 ~sTIGVDf~~rt~e~----~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~-----------------~~SF   97 (205)
T KOG0084|consen   39 ISTIGVDFKIRTVEL----DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK-----------------QESF   97 (205)
T ss_pred             cceeeeEEEEEEeee----cceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc-----------------HHHh
Confidence            567776532  2210    2345789999999999999999999999999999999997                 3333


Q ss_pred             HHHhcCccccCccc-cCCceeEEEEec-cCccCc
Q 019426          278 DWVLKQPCFEVFFC-ATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       278 ~~i~n~~~f~~~~~-~~~~~~iilf~n-~d~~~~  309 (341)
                      +.|-.  |+...-. .++-+|++|..| ||+..+
T Consensus        98 ~~v~~--Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~  129 (205)
T KOG0084|consen   98 NNVKR--WIQEIDRYASENVPKLLVGNKCDLTEK  129 (205)
T ss_pred             hhHHH--HHHHhhhhccCCCCeEEEeeccccHhh
Confidence            33322  3332111 112268899999 999743

>cd01866 Rab2 Rab2 subfamily

Probab=97.65  E-value=0.00016  Score=62.49  Aligned_cols=70  Identities=11%  Similarity=0.203  Sum_probs=52.6

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..+.+++.+++++|||+|+++          .+.+......+..+.... -.+       .|++
T Consensus        52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~-------~pvi  113 (168)
T cd01866          52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQHS-NSN-------MTIM  113 (168)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhC-CCC-------CcEE
Confidence            4679999999998878888899999999999999986          244555555555554431 122       7888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +.+| .|+.
T Consensus       114 vv~nK~Dl~  122 (168)
T cd01866         114 LIGNKCDLE  122 (168)
T ss_pred             EEEECcccc
Confidence            8888 9987

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01864 Rab19 Rab19 subfamily

Probab=97.62  E-value=0.00018  Score=61.69  Aligned_cols=70  Identities=13%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+.-|.+++.+++++++|+|+++.          ..+++....++.+.... -.+       .|+++
T Consensus        52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~p~iv  113 (165)
T cd01864          52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRR----------SSFESVPHWIEEVEKYG-ASN-------VVLLL  113 (165)
T ss_pred             EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCC-------CcEEE
Confidence            5789999999988888899999999999999999872          33444444445443321 112       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       114 v~nK~Dl~~  122 (165)
T cd01864         114 IGNKCDLEE  122 (165)
T ss_pred             EEECccccc
Confidence            898 99873

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04118 Rab24 Rab24 subfamily

Probab=97.61  E-value=0.00024  Score=62.70  Aligned_cols=69  Identities=13%  Similarity=0.168  Sum_probs=50.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..+|.+++++|||+|+++.          ..+++.....+.+.+..  .+       .|++|
T Consensus        50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~~--~~-------~piil  110 (193)
T cd04118          50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDS----------SSFERAKFWVKELQNLE--EH-------CKIYL  110 (193)
T ss_pred             EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhcC--CC-------CCEEE
Confidence            5678999999988888899999999999999999872          33444333344443321  12       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       111 v~nK~Dl~~  119 (193)
T cd04118         111 CGTKSDLIE  119 (193)
T ss_pred             EEEcccccc
Confidence            888 99863

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=97.59  E-value=0.0002  Score=62.51  Aligned_cols=71  Identities=15%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++||...+..|..+|.+++++|+|.|+++-          .-+.......+.+.....-.+       .|+++
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~~iil  111 (170)
T cd04108          49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDV----------ASLEHTRQWLEDALKENDPSS-------VLLFL  111 (170)
T ss_pred             EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCC-------CeEEE
Confidence            5789999999988888999999999999999999861          223333333444433221122       67888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| .|+..
T Consensus       112 VgnK~Dl~~  120 (170)
T cd04108         112 VGTKKDLSS  120 (170)
T ss_pred             EEEChhcCc
Confidence            888 99753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04128 Spg1 Spg1p

Probab=97.59  E-value=0.00026  Score=62.66  Aligned_cols=69  Identities=16%  Similarity=0.217  Sum_probs=49.9

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..|..++.+++++++|+|+++-          ..+++....++.+.....        +..|| 
T Consensus        48 ~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~----------~s~~~i~~~~~~~~~~~~--------~~~pi-  108 (182)
T cd04128          48 EITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRK----------STLNSIKEWYRQARGFNK--------TAIPI-  108 (182)
T ss_pred             EEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCC--------CCCEE-
Confidence            36789999999998889999999999999999999872          345555454554433210        12565 


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+.
T Consensus       109 lVgnK~Dl~  117 (182)
T cd04128         109 LVGTKYDLF  117 (182)
T ss_pred             EEEEchhcc
Confidence            4467 9986

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=97.55  E-value=0.00025  Score=64.27  Aligned_cols=37  Identities=19%  Similarity=0.416  Sum_probs=34.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+.+.+||++||...+..|..+|.+++++|+|.|+++
T Consensus        53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn   89 (202)
T cd04102          53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN   89 (202)
T ss_pred             EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcC
Confidence            4679999999999888899999999999999999997

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04140 ARHI_like ARHI subfamily

Probab=97.55  E-value=0.00028  Score=60.73  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=51.2

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc--cccCccccCCce
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEVFFCATSAL  296 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~--~f~~~~~~~~~~  296 (341)
                      ....+.+||++||...+..|..++.+++++|+|.|+++          ...+++....++.+....  ...+       .
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~-------~  109 (165)
T cd04140          47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTS----------KQSLEELKPIYELICEIKGNNIEK-------I  109 (165)
T ss_pred             EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCCC-------C
Confidence            44678999999998888888889999999999999986          223333333333332211  1122       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |++|.+| +|+..
T Consensus       110 piilv~nK~Dl~~  122 (165)
T cd04140         110 PIMLVGNKCDESH  122 (165)
T ss_pred             CEEEEEECccccc
Confidence            8899998 99874

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04109 Rab28 Rab28 subfamily

Probab=97.54  E-value=0.00023  Score=64.48  Aligned_cols=74  Identities=12%  Similarity=0.149  Sum_probs=51.0

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++|||+|+++-          +.++.....++.+.....-.     ....|++
T Consensus        49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~----------~s~~~~~~w~~~l~~~~~~~-----~~~~pii  113 (215)
T cd04109          49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNS----------QSFENLEDWYSMVRKVLKSS-----ETQPLVV  113 (215)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcccc-----CCCceEE
Confidence            46789999999988888899999999999999999972          34444433333333221000     0125788


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |..| +|+..
T Consensus       114 lVgNK~DL~~  123 (215)
T cd04109         114 LVGNKTDLEH  123 (215)
T ss_pred             EEEECccccc
Confidence            8888 99873

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=97.52  E-value=0.00023  Score=60.67  Aligned_cols=72  Identities=13%  Similarity=0.052  Sum_probs=51.0

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|.+++++++++|||+|+++-          ..+.+....++.+....  .+       .|++
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~-------~p~i  111 (164)
T cd04101          51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNK----------ASFENCSRWVNKVRTAS--KH-------MPGV  111 (164)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC--CC-------CCEE
Confidence            36789999999988888899999999999999999862          22333333333333221  22       6788


Q ss_pred             EEec-cCccCcc
Q 019426          300 AFVA-CEHVSGM  310 (341)
Q Consensus       300 lf~n-~d~~~~~  310 (341)
                      +.+| +|+..+.
T Consensus       112 lv~nK~Dl~~~~  123 (164)
T cd04101         112 LVGNKMDLADKA  123 (164)
T ss_pred             EEEECccccccc
Confidence            8888 9987443

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.51  E-value=8.4e-05  Score=66.30  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=56.7

Q ss_pred             CceeEEEecCCccccccccccc---cCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          220 GEVYRLFDVGGQRNERRKWIHL---FEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~---f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      +..++++|+.|+...|.+....   ..++.+||||||.+.+         ...+.+.-+.+..|+..+...+     ...
T Consensus        48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~---------~~~~~~~Ae~Ly~iL~~~~~~~-----~~~  113 (181)
T PF09439_consen   48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD---------QKELRDVAEYLYDILSDTEVQK-----NKP  113 (181)
T ss_dssp             GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH---------HHHHHHHHHHHHHHHHHHHCCT-----T--
T ss_pred             CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc---------hhhHHHHHHHHHHHHHhhhhcc-----CCC
Confidence            3568999999998888876665   7789999999999864         2347888888888888765432     248


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      ||+|++| .|++
T Consensus       114 piLIacNK~Dl~  125 (181)
T PF09439_consen  114 PILIACNKQDLF  125 (181)
T ss_dssp             EEEEEEE-TTST
T ss_pred             CEEEEEeCcccc
Confidence            9999999 9998

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=97.50  E-value=0.00027  Score=60.65  Aligned_cols=72  Identities=8%  Similarity=0.117  Sum_probs=48.8

Q ss_pred             CceeEEEecCCccc-cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc-ccCccccCCcee
Q 019426          220 GEVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC-FEVFFCATSALH  297 (341)
Q Consensus       220 ~~~~~l~DvgGqr~-eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~-f~~~~~~~~~~~  297 (341)
                      .+.+.+||++|+.. ....+..++.+++++|+|+|+++-          ..++......+.+..... -.+       .|
T Consensus        46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~-------~p  108 (165)
T cd04146          46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDR----------SSFDEISQLKQLIREIKKRDRE-------IP  108 (165)
T ss_pred             EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCC-------CC
Confidence            45789999999975 345678889999999999999972          334444333333332211 123       78


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++++| +|+..
T Consensus       109 iilv~nK~Dl~~  120 (165)
T cd04146         109 VILVGNKADLLH  120 (165)
T ss_pred             EEEEEECCchHH
Confidence            899998 99753

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03118 Rab family protein; Provisional

Probab=97.50  E-value=0.00026  Score=63.91  Aligned_cols=72  Identities=8%  Similarity=0.112  Sum_probs=51.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC-ccccCccccCCceeE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEVFFCATSALHI  298 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~-~~f~~~~~~~~~~~i  298 (341)
                      ...+.+||++||...+..|..++.+++++|+|+|+++          ...+.+....|...+.. ....+       .|+
T Consensus        61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~----------~~sf~~~~~~~~~~~~~~~~~~~-------~~~  123 (211)
T PLN03118         61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTR----------RETFTNLSDVWGKEVELYSTNQD-------CVK  123 (211)
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhcCCCC-------CCE
Confidence            3578999999999888999999999999999999987          23344444445444431 11122       577


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       124 ilv~NK~Dl~~  134 (211)
T PLN03118        124 MLVGNKVDRES  134 (211)
T ss_pred             EEEEECccccc
Confidence            88888 99863

>cd01868 Rab11_like Rab11-like

Probab=97.46  E-value=0.00034  Score=59.80  Aligned_cols=69  Identities=12%  Similarity=0.134  Sum_probs=49.9

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++          .+.+++....+..+.... ..+       .|+++
T Consensus        52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~-------~pi~v  113 (165)
T cd01868          52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK----------KQTFENVERWLKELRDHA-DSN-------IVIML  113 (165)
T ss_pred             EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhC-CCC-------CeEEE
Confidence            578999999998878888999999999999999996          233444444444443321 112       68888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       114 v~nK~Dl~  121 (165)
T cd01868         114 VGNKSDLR  121 (165)
T ss_pred             EEECcccc
Confidence            888 9986

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=97.44  E-value=0.00054  Score=59.12  Aligned_cols=69  Identities=14%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH-HHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF-DWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF-~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ..+.+||++||...+..|..++.+++++|+|+|+++          ...+++....| ..+...  ..+       .|++
T Consensus        46 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~i~~~--~~~-------~pii  106 (174)
T smart00174       46 VELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS----------PASFENVKEKWYPEVKHF--CPN-------TPII  106 (174)
T ss_pred             EEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh--CCC-------CCEE
Confidence            568999999998888888889999999999999986          23344433322 333221  123       7899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       107 lv~nK~Dl~~  116 (174)
T smart00174      107 LVGTKLDLRE  116 (174)
T ss_pred             EEecChhhhh
Confidence            9998 99874

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04111 Rab39 Rab39 subfamily

Probab=97.44  E-value=0.00023  Score=64.59  Aligned_cols=71  Identities=13%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++||...+..|..++.+++++|+|+|+++          .+.+++....++.+.....-.       ..|++|
T Consensus        52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~Sf~~l~~~~~~i~~~~~~~-------~~~iil  114 (211)
T cd04111          52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN----------RESFEHVHDWLEEARSHIQPH-------RPVFIL  114 (211)
T ss_pred             EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCC-------CCeEEE
Confidence            468999999999888889999999999999999987          244555555555554332111       267778


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       115 vgNK~Dl~~  123 (211)
T cd04111         115 VGHKCDLES  123 (211)
T ss_pred             EEEcccccc
Confidence            888 99863

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04171 SelB SelB subfamily

Probab=97.39  E-value=0.00042  Score=58.72  Aligned_cols=68  Identities=18%  Similarity=0.238  Sum_probs=47.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +..+.+||++||...+..+..++.+++++|||+|+++           ....++...+..+ .  .. +      ..|++
T Consensus        50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~-----------~~~~~~~~~~~~~-~--~~-~------~~~~i  108 (164)
T cd04171          50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADE-----------GIMPQTREHLEIL-E--LL-G------IKRGL  108 (164)
T ss_pred             CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCC-----------CccHhHHHHHHHH-H--Hh-C------CCcEE
Confidence            5689999999998777777778889999999999875           1233344333321 1  11 1      14788


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       109 lv~NK~Dl~~  118 (164)
T cd04171         109 VVLTKADLVD  118 (164)
T ss_pred             EEEECccccC
Confidence            8888 99974

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04106 Rab23_lke Rab23-like subfamily

Probab=97.36  E-value=0.0005  Score=58.38  Aligned_cols=70  Identities=11%  Similarity=0.116  Sum_probs=49.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++++|.|+++-          ..+.......+.+ . ....+       .|++
T Consensus        50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~l~~~~~~~-~-~~~~~-------~p~i  110 (162)
T cd04106          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDR----------ESFEAIESWKEKV-E-AECGD-------IPMV  110 (162)
T ss_pred             EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHH-H-HhCCC-------CCEE
Confidence            56899999999988888899999999999999999862          2232222222222 1 11123       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       111 iv~nK~Dl~~  120 (162)
T cd04106         111 LVQTKIDLLD  120 (162)
T ss_pred             EEEEChhccc
Confidence            8888 99874

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04132 Rho4_like Rho4-like subfamily

Probab=97.35  E-value=0.00032  Score=61.52  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=50.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++||...+..|..++.+++++|||+|+++          .+.+++....|-..+... -.+       .|++|
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~-------~piil  110 (187)
T cd04132          49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDN----------PTSLDNVEDKWFPEVNHF-CPG-------TPIML  110 (187)
T ss_pred             EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHh-CCC-------CCEEE
Confidence            468899999998888889999999999999999987          234554443332222211 112       68899


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       111 v~nK~Dl~~  119 (187)
T cd04132         111 VGLKTDLRK  119 (187)
T ss_pred             EEeChhhhh
Confidence            998 99874

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04135 Tc10 TC10 subfamily

Probab=97.34  E-value=0.00086  Score=57.83  Aligned_cols=70  Identities=14%  Similarity=0.129  Sum_probs=48.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++          ...+++....|...+... ..+       .|+++
T Consensus        48 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~----------~~s~~~~~~~~~~~l~~~-~~~-------~piiv  109 (174)
T cd04135          48 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKEY-APN-------VPYLL  109 (174)
T ss_pred             EEEEEEeCCCcccccccccccCCCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhh-CCC-------CCEEE
Confidence            467899999998888889999999999999999886          223333333332222211 122       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      +.| +|+..
T Consensus       110 v~nK~Dl~~  118 (174)
T cd04135         110 VGTQIDLRD  118 (174)
T ss_pred             EeEchhhhc
Confidence            888 99863

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN03108 Rab family protein; Provisional

Probab=97.34  E-value=0.00069  Score=61.27  Aligned_cols=71  Identities=11%  Similarity=0.181  Sum_probs=51.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++|+...+..|..++.+++++|+|+|+++.          ..++.....+..+.... -.+       .|++
T Consensus        54 ~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~----------~s~~~l~~~~~~~~~~~-~~~-------~pii  115 (210)
T PLN03108         54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHA-NAN-------MTIM  115 (210)
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHHhc-CCC-------CcEE
Confidence            35789999999988888899999999999999999872          34444334344443221 112       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       116 iv~nK~Dl~~  125 (210)
T PLN03108        116 LIGNKCDLAH  125 (210)
T ss_pred             EEEECccCcc
Confidence            8888 99864

>cd01870 RhoA_like RhoA-like subfamily

Probab=97.32  E-value=0.00097  Score=57.55  Aligned_cols=72  Identities=14%  Similarity=0.161  Sum_probs=48.9

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++++|.|+++-          ..++.....|...+.. ...+       .|++
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~pii  109 (175)
T cd01870          48 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKH-FCPN-------VPII  109 (175)
T ss_pred             EEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-hCCC-------CCEE
Confidence            45789999999988888888899999999999998862          1222222222222221 1123       7889


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      +.+| +|+...
T Consensus       110 lv~nK~Dl~~~  120 (175)
T cd01870         110 LVGNKKDLRND  120 (175)
T ss_pred             EEeeChhcccC
Confidence            9988 998743

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04114 Rab30 Rab30 subfamily

Probab=97.30  E-value=0.00079  Score=57.67  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=33.0

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+.+||++|+...+..|..++..++++|+|+|+++
T Consensus        56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~   91 (169)
T cd04114          56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITC   91 (169)
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence            568899999998888899999999999999999885

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.00066  Score=61.67  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             ccCCceeEEEecCCccccccccccccC---CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFE---GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCAT  293 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~---~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~  293 (341)
                      ..++-..+++|+.|....|.|-..+|.   .+.+||||||.+.|+.        |-=+-|.-+|+-+.++.-.++     
T Consensus        78 r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k--------~vrdvaefLydil~~~~~~~~-----  144 (238)
T KOG0090|consen   78 RLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLK--------NVRDVAEFLYDILLDSRVKKN-----  144 (238)
T ss_pred             eecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccch--------hhHHHHHHHHHHHHhhccccC-----
Confidence            455666899999999999999999998   7999999999999853        333334445555555554444     


Q ss_pred             CceeEEEEec-cCcc
Q 019426          294 SALHITAFVA-CEHV  307 (341)
Q Consensus       294 ~~~~iilf~n-~d~~  307 (341)
                       ..||+|-+| .|++
T Consensus       145 -~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  145 -KPPVLIACNKQDLF  158 (238)
T ss_pred             -CCCEEEEecchhhh
Confidence             378899999 8987

>PLN03110 Rab GTPase; Provisional

Probab=97.26  E-value=0.00087  Score=60.93  Aligned_cols=70  Identities=10%  Similarity=0.090  Sum_probs=49.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||++||...+..|.+++.+++++|||+|+++-          ..++.....++.+-... -.+       .|++
T Consensus        60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~pii  121 (216)
T PLN03110         60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVQRWLRELRDHA-DSN-------IVIM  121 (216)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCCh----------HHHHHHHHHHHHHHHhC-CCC-------CeEE
Confidence            36899999999998889999999999999999999862          22322222333332211 112       6888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +.+| +|+.
T Consensus       122 iv~nK~Dl~  130 (216)
T PLN03110        122 MAGNKSDLN  130 (216)
T ss_pred             EEEEChhcc
Confidence            8888 9975

>cd04148 RGK RGK subfamily

Probab=97.21  E-value=0.0013  Score=60.14  Aligned_cols=71  Identities=10%  Similarity=0.005  Sum_probs=48.1

Q ss_pred             CCceeEEEecCCccccccccccccC-CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFE-GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~-~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      ....+.+||++|+.  ...-..|+. +++++|+|+|+++          ...+....+.+..+.......+       .|
T Consensus        48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td----------~~S~~~~~~~~~~l~~~~~~~~-------~p  108 (221)
T cd04148          48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTD----------RSSFERASELRIQLRRNRQLED-------RP  108 (221)
T ss_pred             EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CC
Confidence            45678999999997  111133555 9999999999997          2335555555555554332233       78


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      ++|++| +|+..
T Consensus       109 iilV~NK~Dl~~  120 (221)
T cd04148         109 IILVGNKSDLAR  120 (221)
T ss_pred             EEEEEEChhccc
Confidence            999998 99863

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01873 RhoBTB RhoBTB subfamily

Probab=97.19  E-value=0.0012  Score=59.24  Aligned_cols=68  Identities=13%  Similarity=0.223  Sum_probs=45.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+++.+||..||..  .....+|.+++++|+|.|+++          ...++.....|...+... ..+       .|++
T Consensus        65 ~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~----------~~Sf~~~~~~w~~~i~~~-~~~-------~pii  124 (195)
T cd01873          65 SVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIAS----------PNSLRNVKTMWYPEIRHF-CPR-------VPVI  124 (195)
T ss_pred             EEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCC----------hhHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence            46899999988853  122347999999999999997          234544443343322211 112       6889


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+.
T Consensus       125 lvgNK~DL~  133 (195)
T cd01873         125 LVGCKLDLR  133 (195)
T ss_pred             EEEEchhcc
Confidence            9998 9975

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=97.17  E-value=0.00085  Score=59.63  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ..++..+.+||++|+...+..|..++.+++++|+|+|.++-           .......++..+..    .+       .
T Consensus        61 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-----------~~~~~~~~~~~~~~----~~-------~  118 (194)
T cd01891          61 TYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-----------PMPQTRFVLKKALE----LG-------L  118 (194)
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-----------ccHHHHHHHHHHHH----cC-------C
Confidence            44567899999999998888999999999999999999861           01222233333322    12       5


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       119 p~iiv~NK~Dl~  130 (194)
T cd01891         119 KPIVVINKIDRP  130 (194)
T ss_pred             CEEEEEECCCCC
Confidence            7788888 9986

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01890 LepA LepA subfamily

Probab=97.17  E-value=0.00068  Score=58.74  Aligned_cols=66  Identities=12%  Similarity=0.116  Sum_probs=48.2

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +..+.+||++|+...+..|..++.+++++|+|+|.++-.+           .+++..+..+..    .+       .|++
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-----------~~~~~~~~~~~~----~~-------~~ii  123 (179)
T cd01890          66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-----------AQTLANFYLALE----NN-------LEII  123 (179)
T ss_pred             cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-----------HhhHHHHHHHHH----cC-------CCEE
Confidence            4678999999999889999999999999999999986311           122333332222    12       5788


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +++| +|+.
T Consensus       124 iv~NK~Dl~  132 (179)
T cd01890         124 PVINKIDLP  132 (179)
T ss_pred             EEEECCCCC
Confidence            8888 9976

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.15  E-value=0.001  Score=56.72  Aligned_cols=67  Identities=10%  Similarity=-0.026  Sum_probs=49.0

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      .+..+.+||++|+...+..|..++..++++++|+|.++.+           ..++...+..+..    .+       .|+
T Consensus        48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~-------~p~  105 (168)
T cd01887          48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----AN-------VPF  105 (168)
T ss_pred             CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cC-------CCE
Confidence            4678999999999888888998999999999999998742           1223333332221    12       578


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      ++++| +|+.
T Consensus       106 ivv~NK~Dl~  115 (168)
T cd01887         106 IVALNKIDKP  115 (168)
T ss_pred             EEEEEceecc
Confidence            88888 9986

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04142 RRP22 RRP22 subfamily

Probab=97.13  E-value=0.0016  Score=58.49  Aligned_cols=70  Identities=14%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             ceeEEEecCCccc----ccccc----ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc--ccCcc
Q 019426          221 EVYRLFDVGGQRN----ERRKW----IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEVFF  290 (341)
Q Consensus       221 ~~~~l~DvgGqr~----eR~kW----~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~--f~~~~  290 (341)
                      ..+.+||++|+..    .+..|    ..++.+++++|||+|+++          ...++....+.+.+.+...  ..+  
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~----------~~S~~~~~~~~~~i~~~~~~~~~~--  116 (198)
T cd04142          49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICS----------PDSFHYVKLLRQQILETRPAGNKE--  116 (198)
T ss_pred             EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcccCCCC--
Confidence            5788999999642    22333    345789999999999986          3456666666677766432  223  


Q ss_pred             ccCCceeEEEEec-cCcc
Q 019426          291 CATSALHITAFVA-CEHV  307 (341)
Q Consensus       291 ~~~~~~~iilf~n-~d~~  307 (341)
                           .|++|.+| +|+.
T Consensus       117 -----~piiivgNK~Dl~  129 (198)
T cd04142         117 -----PPIVVVGNKRDQQ  129 (198)
T ss_pred             -----CCEEEEEECcccc
Confidence                 78999999 9996

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=97.06  E-value=0.00053  Score=62.56  Aligned_cols=51  Identities=14%  Similarity=0.134  Sum_probs=42.0

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .-|.-.....|      .+++.++.++|++|++..++.|......++++|||||.++
T Consensus        62 g~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~  112 (219)
T cd01883          62 GVTIDVGLAKF------ETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARK  112 (219)
T ss_pred             ccCeecceEEE------eeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCC
Confidence            33444555667      6778899999999998888888888889999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.04  E-value=0.0014  Score=55.67  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=49.4

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+......+..++.+++++|+|.|+++          .+.++.....+..+-.... .+       .|+
T Consensus        46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~----------~~S~~~~~~~~~~i~~~~~-~~-------~~i  107 (162)
T PF00071_consen   46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD----------EESFENLKKWLEEIQKYKP-ED-------IPI  107 (162)
T ss_dssp             EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB----------HHHHHTHHHHHHHHHHHST-TT-------SEE
T ss_pred             cccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccc-cc-------ccc
Confidence            34679999999997666667788999999999999987          2334443333333322111 12       688


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       108 ivvg~K~D~~~  118 (162)
T PF00071_consen  108 IVVGNKSDLSD  118 (162)
T ss_dssp             EEEEETTTGGG
T ss_pred             eeeeccccccc
Confidence            88887 99874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04168 TetM_like Tet(M)-like subfamily

Probab=96.89  E-value=0.0027  Score=58.86  Aligned_cols=82  Identities=16%  Similarity=0.090  Sum_probs=59.5

Q ss_pred             ccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH
Q 019426          198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF  277 (341)
Q Consensus       198 ~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF  277 (341)
                      .|.-|.......+      .+++..+.+||++|+......|..++..++++|+|+|.++-           -......++
T Consensus        47 ~rg~ti~~~~~~~------~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g-----------~~~~~~~~~  109 (237)
T cd04168          47 QRGITIFSAVASF------QWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG-----------VQAQTRILW  109 (237)
T ss_pred             hCCCceeeeeEEE------EECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC-----------CCHHHHHHH
Confidence            3445555566666      67889999999999988888899999999999999998862           112333444


Q ss_pred             HHHhcCccccCccccCCceeEEEEec-cCcc
Q 019426          278 DWVLKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       278 ~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      +.+-.    .+       .|+++|+| +|+.
T Consensus       110 ~~~~~----~~-------~P~iivvNK~D~~  129 (237)
T cd04168         110 RLLRK----LN-------IPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHH----cC-------CCEEEEEECcccc
Confidence            43322    13       68889999 9986

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=96.86  E-value=0.0041  Score=56.09  Aligned_cols=70  Identities=9%  Similarity=0.041  Sum_probs=50.5

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      +.+.+.+||++|+...+..|..++.+++++|+|.|+++-          ..+.+....+..+...  ..+       .|+
T Consensus        56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~-------~~i  116 (215)
T PTZ00132         56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSR----------ITYKNVPNWHRDIVRV--CEN-------IPI  116 (215)
T ss_pred             eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh--CCC-------CCE
Confidence            457899999999988888899999999999999999862          3344433333333321  123       678


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      ++.+| +|+.
T Consensus       117 ~lv~nK~Dl~  126 (215)
T PTZ00132        117 VLVGNKVDVK  126 (215)
T ss_pred             EEEEECccCc
Confidence            87888 8875

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.0035  Score=56.29  Aligned_cols=74  Identities=15%  Similarity=0.127  Sum_probs=60.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+++||..||...|..-..|+.+..++|-|-|+++          .|-++....-.+.+.+.+--.+       ..|+
T Consensus        70 ~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~----------~~Sfe~t~kWi~dv~~e~gs~~-------viI~  132 (221)
T KOG0094|consen   70 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD----------RNSFENTSKWIEDVRRERGSDD-------VIIF  132 (221)
T ss_pred             EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc----------cchHHHHHHHHHHHHhccCCCc-------eEEE
Confidence            4779999999999999999999999999999999998          6888888888888887654322       4555


Q ss_pred             EEec-cCccCcc
Q 019426          300 AFVA-CEHVSGM  310 (341)
Q Consensus       300 lf~n-~d~~~~~  310 (341)
                      |..| .|++.+.
T Consensus       133 LVGnKtDL~dkr  144 (221)
T KOG0094|consen  133 LVGNKTDLSDKR  144 (221)
T ss_pred             EEcccccccchh
Confidence            6668 9987554

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=96.82  E-value=0.0038  Score=57.88  Aligned_cols=76  Identities=13%  Similarity=0.124  Sum_probs=47.7

Q ss_pred             cCCceeEEEecCCccccc-----cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCcccc
Q 019426          218 KSGEVYRLFDVGGQRNER-----RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCA  292 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR-----~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~  292 (341)
                      .+.+.+.+||+|||...-     ....+.|++|.++|||+|...-           ...+++.-|...+..-+-.+    
T Consensus        45 ~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~-----------~~~~~l~~~~~~i~~l~~~s----  109 (232)
T PF04670_consen   45 LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSD-----------DYDEDLAYLSDCIEALRQYS----  109 (232)
T ss_dssp             TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-S-----------TCHHHHHHHHHHHHHHHHHS----
T ss_pred             CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccc-----------cHHHHHHHHHHHHHHHHHhC----
Confidence            456799999999996432     2346679999999999998831           14555555555544311111    


Q ss_pred             CCceeEEEEec-cCccCc
Q 019426          293 TSALHITAFVA-CEHVSG  309 (341)
Q Consensus       293 ~~~~~iilf~n-~d~~~~  309 (341)
                       +-.++-+|.. .|.++.
T Consensus       110 -p~~~v~vfiHK~D~l~~  126 (232)
T PF04670_consen  110 -PNIKVFVFIHKMDLLSE  126 (232)
T ss_dssp             -TT-EEEEEEE-CCCS-H
T ss_pred             -CCCeEEEEEeecccCCH
Confidence             1266778886 999843

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01893 Miro1 Miro1 subfamily

Probab=96.82  E-value=0.0022  Score=55.22  Aligned_cols=73  Identities=5%  Similarity=0.057  Sum_probs=49.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..|..++.+++++++|+|+++-          ..++.....|...+.... .+       .|++
T Consensus        46 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~i~~~~-~~-------~pvi  107 (166)
T cd01893          46 RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRP----------STLERIRTKWLPLIRRLG-VK-------VPII  107 (166)
T ss_pred             eEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhC-CC-------CCEE
Confidence            35789999999988888898899999999999998862          223332222222222110 13       7889


Q ss_pred             EEec-cCccCcc
Q 019426          300 AFVA-CEHVSGM  310 (341)
Q Consensus       300 lf~n-~d~~~~~  310 (341)
                      +.+| +|+....
T Consensus       108 iv~nK~Dl~~~~  119 (166)
T cd01893         108 LVGNKSDLRDGS  119 (166)
T ss_pred             EEEEchhccccc
Confidence            8888 9997433

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=96.80  E-value=0.003  Score=54.68  Aligned_cols=69  Identities=14%  Similarity=0.100  Sum_probs=49.8

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      ..+..+.+||++|+...+..|.+++.++++++||+|.++..           .......+..+..    .+       .|
T Consensus        59 ~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----------~~~~~~~~~~~~~----~~-------~~  116 (189)
T cd00881          59 WPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV-----------QPQTREHLRIARE----GG-------LP  116 (189)
T ss_pred             eCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC-----------cHHHHHHHHHHHH----CC-------CC
Confidence            34568999999999888889999999999999999987521           1122222222221    23       68


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++++| +|++.
T Consensus       117 i~iv~nK~D~~~  128 (189)
T cd00881         117 IIVAINKIDRVG  128 (189)
T ss_pred             eEEEEECCCCcc
Confidence            888888 99984

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.75  E-value=0.0019  Score=58.34  Aligned_cols=71  Identities=11%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccC-Ccee
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCAT-SALH  297 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~-~~~~  297 (341)
                      ..+.+++||.+||...|..-..||.++.+|+-|+|+++                 ..-|+.+.+  |++..=-+. +.++
T Consensus        59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn-----------------e~Sfeni~~--W~~~I~e~a~~~v~  119 (207)
T KOG0078|consen   59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN-----------------EKSFENIRN--WIKNIDEHASDDVV  119 (207)
T ss_pred             eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc-----------------hHHHHHHHH--HHHHHHhhCCCCCc
Confidence            45789999999999999999999999999999999997                 223333333  333211111 2478


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      ++|..| ||+-.
T Consensus       120 ~~LvGNK~D~~~  131 (207)
T KOG0078|consen  120 KILVGNKCDLEE  131 (207)
T ss_pred             EEEeeccccccc
Confidence            899999 99984

>cd04169 RF3 RF3 subfamily

Probab=96.70  E-value=0.0035  Score=59.21  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=41.0

Q ss_pred             cccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       199 r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      |..|.......|      .+++.++.+||++|+......+..++..++++|+|+|.++
T Consensus        55 rg~si~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~  106 (267)
T cd04169          55 RGISVTSSVMQF------EYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK  106 (267)
T ss_pred             CCCCeEEEEEEE------eeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCC
Confidence            344445555667      7888999999999997666656667899999999999875

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=96.69  E-value=0.0045  Score=50.97  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCc
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY  257 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdy  257 (341)
                      ..+.+||++|+...+..|..++.++.++++++|++.+
T Consensus        50 ~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~   86 (161)
T TIGR00231        50 YKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL   86 (161)
T ss_pred             EEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee
Confidence            6789999999998999999899999999999998864

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=96.66  E-value=0.0046  Score=60.36  Aligned_cols=74  Identities=11%  Similarity=0.122  Sum_probs=49.2

Q ss_pred             CCceeEEEecCCcc-------ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC-ccccCcc
Q 019426          219 SGEVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEVFF  290 (341)
Q Consensus       219 ~~~~~~l~DvgGqr-------~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~-~~f~~~~  290 (341)
                      .+.+|.+||++|..       ..+..|..+++.++++|||+|+++.+          .+++-..+.+.+... +.+.+  
T Consensus       204 ~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~----------s~e~~~~~~~EL~~~~~~L~~--  271 (335)
T PRK12299        204 DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD----------PVEDYKTIRNELEKYSPELAD--  271 (335)
T ss_pred             CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC----------CHHHHHHHHHHHHHhhhhccc--
Confidence            34679999999973       24567777888999999999999742          122222222333221 33344  


Q ss_pred             ccCCceeEEEEec-cCccCc
Q 019426          291 CATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       291 ~~~~~~~iilf~n-~d~~~~  309 (341)
                           .|+++.+| +|++..
T Consensus       272 -----kp~IIV~NKiDL~~~  286 (335)
T PRK12299        272 -----KPRILVLNKIDLLDE  286 (335)
T ss_pred             -----CCeEEEEECcccCCc
Confidence                 78899998 998743

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=96.64  E-value=0.0061  Score=51.21  Aligned_cols=68  Identities=10%  Similarity=0.082  Sum_probs=45.6

Q ss_pred             ccCCceeEEEecCCcccccc------ccccccC--CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          217 KKSGEVYRLFDVGGQRNERR------KWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~------kW~~~f~--~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      .+.+..+.+||++|+.....      .|..++.  +++++|+|+|.++.++             ....+..+...    +
T Consensus        39 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------------~~~~~~~~~~~----~  101 (158)
T cd01879          39 KLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLER-------------NLYLTLQLLEL----G  101 (158)
T ss_pred             eeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchh-------------HHHHHHHHHHc----C
Confidence            44567899999999975443      2566664  9999999999886321             12233333321    2


Q ss_pred             ccccCCceeEEEEec-cCccC
Q 019426          289 FFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~  308 (341)
                             .|+++++| +|+..
T Consensus       102 -------~~~iiv~NK~Dl~~  115 (158)
T cd01879         102 -------LPVVVALNMIDEAE  115 (158)
T ss_pred             -------CCEEEEEehhhhcc
Confidence                   68888888 99873

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=96.63  E-value=0.0048  Score=52.84  Aligned_cols=79  Identities=11%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             CceeEEEecCCcc----cccc---ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc------c
Q 019426          220 GEVYRLFDVGGQR----NERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC------F  286 (341)
Q Consensus       220 ~~~~~l~DvgGqr----~eR~---kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~------f  286 (341)
                      +..+.+||++|+.    ..+.   .|..++.++++++||+|.++.+..    ...+.+.+.......+.....      +
T Consensus        43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (176)
T cd01881          43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLYDLETILGLL  118 (176)
T ss_pred             CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            6789999999972    1222   344457789999999999874200    001233333333344433221      1


Q ss_pred             cCccccCCceeEEEEec-cCccCc
Q 019426          287 EVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       287 ~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      .+       .|+++.+| +|+...
T Consensus       119 ~~-------~p~ivv~NK~Dl~~~  135 (176)
T cd01881         119 TA-------KPVIYVLNKIDLDDA  135 (176)
T ss_pred             hh-------CCeEEEEEchhcCch
Confidence            23       68888888 999744

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK08118 topology modulation protein; Reviewed

Probab=96.61  E-value=0.0011  Score=58.06  Aligned_cols=22  Identities=45%  Similarity=0.735  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ||+|+|++||||||+++++.-.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998743

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=96.60  E-value=0.0086  Score=54.04  Aligned_cols=91  Identities=16%  Similarity=0.239  Sum_probs=67.1

Q ss_pred             CCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCC
Q 019426          186 ANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDE  265 (341)
Q Consensus       186 ~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~  265 (341)
                      .+|.||.+|..+-        +..+      .-....+.++|.+||.....-=.+|..+.++.+.|.|+++         
T Consensus        30 ~~y~ptied~y~k--------~~~v------~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd---------   86 (196)
T KOG0395|consen   30 EDYDPTIEDSYRK--------ELTV------DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITD---------   86 (196)
T ss_pred             cccCCCccccceE--------EEEE------CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCC---------
Confidence            4599999975331        1222      2233568899999975544444556778899999999998         


Q ss_pred             CccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCcc
Q 019426          266 QKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       266 ~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                       ..-+++...+.+.|...+.-.+       .|++|..| +|+.
T Consensus        87 -~~SF~~~~~l~~~I~r~~~~~~-------~PivlVGNK~Dl~  121 (196)
T KOG0395|consen   87 -RSSFEEAKQLREQILRVKGRDD-------VPIILVGNKCDLE  121 (196)
T ss_pred             -HHHHHHHHHHHHHHHHhhCcCC-------CCEEEEEEcccch
Confidence             5779999999999966665544       89999999 9998

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=96.53  E-value=0.005  Score=58.27  Aligned_cols=81  Identities=10%  Similarity=-0.026  Sum_probs=57.8

Q ss_pred             cccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH
Q 019426          199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  278 (341)
Q Consensus       199 r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~  278 (341)
                      |.-|.-.....|      .+++..+.++|++|.......|..++..++++|||||.++--           ......+++
T Consensus        48 rgiti~~~~~~~------~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-----------~~~t~~~~~  110 (270)
T cd01886          48 RGITIQSAATTC------FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-----------EPQTETVWR  110 (270)
T ss_pred             CCcCeeccEEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-----------CHHHHHHHH
Confidence            333444445566      678899999999999878888999999999999999988631           122334444


Q ss_pred             HHhcCccccCccccCCceeEEEEec-cCcc
Q 019426          279 WVLKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       279 ~i~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      .+..    .+       .|+++|+| +|+.
T Consensus       111 ~~~~----~~-------~p~ivviNK~D~~  129 (270)
T cd01886         111 QADR----YN-------VPRIAFVNKMDRT  129 (270)
T ss_pred             HHHH----cC-------CCEEEEEECCCCC
Confidence            3322    12       67889999 9987

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.47  E-value=0.0017  Score=52.82  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+|.|++||||||+++++.-.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47999999999999999986543

...

>PRK04213 GTP-binding protein; Provisional

Probab=96.45  E-value=0.0059  Score=54.21  Aligned_cols=76  Identities=14%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             eeEEEecCC-----------ccccccccccccC----CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426          222 VYRLFDVGG-----------QRNERRKWIHLFE----GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  286 (341)
Q Consensus       222 ~~~l~DvgG-----------qr~eR~kW~~~f~----~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f  286 (341)
                      .+.+||++|           |...|..|.+++.    .++.+++|+|.+++.+....-...+.+.....++..+..    
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  128 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE----  128 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence            589999999           5556667777764    467899999988764321100011223333444443332    


Q ss_pred             cCccccCCceeEEEEec-cCccC
Q 019426          287 EVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       287 ~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      .+       .|+++++| +|+..
T Consensus       129 ~~-------~p~iiv~NK~Dl~~  144 (201)
T PRK04213        129 LG-------IPPIVAVNKMDKIK  144 (201)
T ss_pred             cC-------CCeEEEEECccccC
Confidence            13       68888888 99863

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.45  E-value=0.0017  Score=57.82  Aligned_cols=22  Identities=36%  Similarity=0.603  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ||+|+|++||||||+++++.-.
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998643

>PRK07261 topology modulation protein; Provisional

Probab=96.44  E-value=0.0017  Score=57.15  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=19.3

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      ||+|+|++||||||+++++.-
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999999863

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.017  Score=51.66  Aligned_cols=71  Identities=14%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .++|.+||.+||...+..=.-||.+++|.|-|-|+.+.          .-+..++.-+..+=..-- .+       .-|-
T Consensus        53 ~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~----------~SF~~aK~WvkeL~~~~~-~~-------~via  114 (200)
T KOG0092|consen   53 TIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE----------ESFEKAKNWVKELQRQAS-PN-------IVIA  114 (200)
T ss_pred             EEEEEEEEcCCcccccccccceecCCcEEEEEEecccH----------HHHHHHHHHHHHHHhhCC-CC-------eEEE
Confidence            47888999999988777777899999999999999983          446666666666544321 22       3334


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |..| +|+..
T Consensus       115 lvGNK~DL~~  124 (200)
T KOG0092|consen  115 LVGNKADLLE  124 (200)
T ss_pred             Eecchhhhhh
Confidence            5558 99984

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=96.37  E-value=0.016  Score=49.38  Aligned_cols=77  Identities=18%  Similarity=0.117  Sum_probs=46.9

Q ss_pred             ccCCceeEEEecCCccc----ccccccc-----ccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc
Q 019426          217 KKSGEVYRLFDVGGQRN----ERRKWIH-----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  287 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~----eR~kW~~-----~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~  287 (341)
                      ...+..+.+||++|+..    ++..|..     +....+++|||+|.++...        -.+++...++..+..  .+.
T Consensus        43 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~--------~~~~~~~~~~~~l~~--~~~  112 (168)
T cd01897          43 DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG--------YSLEEQLSLFEEIKP--LFK  112 (168)
T ss_pred             ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc--------cchHHHHHHHHHHHh--hcC
Confidence            45567899999999842    2222211     1123579999999986311        123444555555533  123


Q ss_pred             CccccCCceeEEEEec-cCccCcc
Q 019426          288 VFFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       288 ~~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                      +       .|+++.+| +|+....
T Consensus       113 ~-------~pvilv~NK~Dl~~~~  129 (168)
T cd01897         113 N-------KPVIVVLNKIDLLTFE  129 (168)
T ss_pred             c-------CCeEEEEEccccCchh
Confidence            4       78999998 9997543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG2229 Predicted GTPase [General function prediction only]

Probab=96.29  E-value=0.0089  Score=53.13  Aligned_cols=70  Identities=16%  Similarity=0.225  Sum_probs=52.3

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      .+..+.+||..||...+..|.-+++++.+.|++||.++=         ..+  ++..+.+-+-...          ..|+
T Consensus        66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~---------~~~--~a~~ii~f~~~~~----------~ip~  124 (187)
T COG2229          66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP---------ITF--HAEEIIDFLTSRN----------PIPV  124 (187)
T ss_pred             CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCC---------cch--HHHHHHHHHhhcc----------CCCE
Confidence            347899999999999999999999999999999999971         122  4444433322211          1689


Q ss_pred             EEEec-cCccCc
Q 019426          299 TAFVA-CEHVSG  309 (341)
Q Consensus       299 ilf~n-~d~~~~  309 (341)
                      ++++| .|++..
T Consensus       125 vVa~NK~DL~~a  136 (187)
T COG2229         125 VVAINKQDLFDA  136 (187)
T ss_pred             EEEeeccccCCC
Confidence            99999 999844

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.23  E-value=0.0037  Score=55.28  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .++|.|++||||||++|++-.+-
T Consensus        31 ~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhcc
Confidence            68999999999999999998654

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=96.22  E-value=0.011  Score=57.50  Aligned_cols=75  Identities=11%  Similarity=0.168  Sum_probs=47.4

Q ss_pred             ceeEEEecCCcc-------ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhc-CccccCcccc
Q 019426          221 EVYRLFDVGGQR-------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEVFFCA  292 (341)
Q Consensus       221 ~~~~l~DvgGqr-------~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n-~~~f~~~~~~  292 (341)
                      ..+.+||++|+.       ..+..|..+.+.++++|||+|+++.+.       .+-+++-..+.+.+.. .+.+.+    
T Consensus       205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l~~EL~~~~~~l~~----  273 (329)
T TIGR02729       205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEIIRNELKKYSPELAE----  273 (329)
T ss_pred             eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHHHHHHHHhhhhhcc----
Confidence            689999999984       244567777788999999999997521       1111111112222222 123334    


Q ss_pred             CCceeEEEEec-cCccCc
Q 019426          293 TSALHITAFVA-CEHVSG  309 (341)
Q Consensus       293 ~~~~~iilf~n-~d~~~~  309 (341)
                         .|++|.+| +|++..
T Consensus       274 ---kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       274 ---KPRIVVLNKIDLLDE  288 (329)
T ss_pred             ---CCEEEEEeCccCCCh
Confidence               78888898 999744

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK10218 GTP-binding protein; Provisional

Probab=96.19  E-value=0.01  Score=62.33  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=52.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++.++.+||+.|+...+.-|..++..++++|+|+|.++-           .+......+..+..    .+       .
T Consensus        64 ~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G-----------~~~qt~~~l~~a~~----~g-------i  121 (607)
T PRK10218         64 KWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG-----------PMPQTRFVTKKAFA----YG-------L  121 (607)
T ss_pred             ecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC-----------ccHHHHHHHHHHHH----cC-------C
Confidence            67789999999999999889999999999999999998852           13334444444333    13       5


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       122 p~IVviNKiD~~  133 (607)
T PRK10218        122 KPIVVINKVDRP  133 (607)
T ss_pred             CEEEEEECcCCC
Confidence            6788888 9986

>cd01898 Obg Obg subfamily

Probab=96.19  E-value=0.014  Score=49.73  Aligned_cols=74  Identities=8%  Similarity=0.113  Sum_probs=42.8

Q ss_pred             ceeEEEecCCccc-------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccC
Q 019426          221 EVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCAT  293 (341)
Q Consensus       221 ~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~  293 (341)
                      ..+.+||++|+..       .++.|...+++++++|||+|.++-++      ....+..-.+.+....  +.+.+     
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~------~~~~~~~~~~~l~~~~--~~~~~-----  114 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDD------PVEDYKTIRNELELYN--PELLE-----  114 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCC------HHHHHHHHHHHHHHhC--ccccc-----
Confidence            3799999999731       12334444557999999999987310      0112222222222221  22233     


Q ss_pred             CceeEEEEec-cCccCc
Q 019426          294 SALHITAFVA-CEHVSG  309 (341)
Q Consensus       294 ~~~~iilf~n-~d~~~~  309 (341)
                        .|+++++| +|+...
T Consensus       115 --~p~ivv~NK~Dl~~~  129 (170)
T cd01898         115 --KPRIVVLNKIDLLDE  129 (170)
T ss_pred             --cccEEEEEchhcCCc
Confidence              67888888 998743

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=96.10  E-value=0.0068  Score=52.64  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=40.8

Q ss_pred             CccCcccceeccccccCeEEE--EeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          188 YVPTKDDVLYARVRTTGVVEI--QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       188 Y~Pt~~DIl~~r~~T~Gi~e~--~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      |+-.+.|  ..+..|.|++-.  .+..    .-..+.|.+||+||||..+-.-.-.-.+.-+|+|+.||+.
T Consensus        40 YV~~~~d--e~~~q~~GvN~mdkt~~i----~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~  104 (205)
T KOG1673|consen   40 YVQNEYD--EEYTQTLGVNFMDKTVSI----RGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTR  104 (205)
T ss_pred             hhcchhH--HHHHHHhCccceeeEEEe----cceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCc
Confidence            4444434  455678888753  2310    2234789999999998444433333567889999999996

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=96.07  E-value=0.0041  Score=53.22  Aligned_cols=32  Identities=41%  Similarity=0.704  Sum_probs=26.3

Q ss_pred             hcccceEEeccCCCcchhHHHHHH------hhhcCCCC
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK------LLFQTGFD   76 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~------~~~~~~~~   76 (341)
                      ++++|++++|-+.+|||||+||++      +...+||+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn   52 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN   52 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc
Confidence            467999999999999999999997      33355664

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=96.07  E-value=0.022  Score=50.34  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=51.2

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      ..+..+.++|++|+....+........+|++|+|||..+-           -...+.+.+..+...    +       .|
T Consensus        67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-----------~~~~~~~~l~~~~~~----~-------~p  124 (188)
T PF00009_consen   67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-----------IQPQTEEHLKILREL----G-------IP  124 (188)
T ss_dssp             ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-----------STHHHHHHHHHHHHT----T--------S
T ss_pred             ccccceeecccccccceeecccceecccccceeeeecccc-----------ccccccccccccccc----c-------cc
Confidence            5678899999999987777777778899999999998862           233455555555332    2       67


Q ss_pred             EEEEec-cCcc
Q 019426          298 ITAFVA-CEHV  307 (341)
Q Consensus       298 iilf~n-~d~~  307 (341)
                      +++++| +|++
T Consensus       125 ~ivvlNK~D~~  135 (188)
T PF00009_consen  125 IIVVLNKMDLI  135 (188)
T ss_dssp             EEEEEETCTSS
T ss_pred             eEEeeeeccch
Confidence            888888 9998

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=96.05  E-value=0.0061  Score=53.32  Aligned_cols=30  Identities=33%  Similarity=0.573  Sum_probs=23.4

Q ss_pred             HHHHHHhhcccceEEeccCCCcchhHHHHHH
Q 019426           38 EQETKAEKHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        38 ~~~~~~~~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ++.+.+++ +++||+||..+|||||++|.+.
T Consensus         8 rk~k~ker-E~riLiLGLdNsGKTti~~kl~   37 (185)
T KOG0073|consen    8 RKQKLKER-EVRILILGLDNSGKTTIVKKLL   37 (185)
T ss_pred             HHHHhhhh-eeEEEEEecCCCCchhHHHHhc
Confidence            33343433 7899999999999999999764

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=95.98  E-value=0.016  Score=52.23  Aligned_cols=40  Identities=10%  Similarity=0.120  Sum_probs=34.0

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+++.++.++|++|+....+.+...+..++++|+|+|.++
T Consensus        73 ~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~  112 (208)
T cd04166          73 STPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARK  112 (208)
T ss_pred             ecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCC
Confidence            5677889999999997655667778899999999999875

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK06217 hypothetical protein; Validated

Probab=95.97  E-value=0.0043  Score=54.88  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      +|+|.|.+||||||+.+++.-.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998744

>PRK03003 GTP-binding protein Der; Reviewed

Probab=95.92  E-value=0.011  Score=60.18  Aligned_cols=40  Identities=18%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             ccCCceeEEEecCCccc--------cccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~--------eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+.+..+.+||+||+..        .+..|..++.++++||||+|.++
T Consensus        82 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~  129 (472)
T PRK03003         82 EWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATV  129 (472)
T ss_pred             EECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            45567899999999863        23446678899999999999986

>TIGR01393 lepA GTP-binding protein LepA

Probab=95.92  E-value=0.019  Score=60.32  Aligned_cols=65  Identities=12%  Similarity=0.065  Sum_probs=48.7

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|.++-.           ..+++..+.....    .+       .|+++
T Consensus        70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~-----------~~qt~~~~~~~~~----~~-------ipiIi  127 (595)
T TIGR01393        70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI-----------EAQTLANVYLALE----ND-------LEIIP  127 (595)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC-----------CHhHHHHHHHHHH----cC-------CCEEE
Confidence            68999999999988889999999999999999998621           1123333333332    12       57899


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      ++| +|+.
T Consensus       128 ViNKiDl~  135 (595)
T TIGR01393       128 VINKIDLP  135 (595)
T ss_pred             EEECcCCC
Confidence            999 9986

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=95.91  E-value=0.015  Score=60.29  Aligned_cols=81  Identities=12%  Similarity=0.151  Sum_probs=55.6

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .-|.......|      .+++..+.+||++|+.........++..++++|+|+|.++--           -.....+|+.
T Consensus        64 giSi~~~~~~~------~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-----------~~~t~~l~~~  126 (526)
T PRK00741         64 GISVTSSVMQF------PYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-----------EPQTRKLMEV  126 (526)
T ss_pred             CCceeeeeEEE------EECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-----------CHHHHHHHHH
Confidence            33444444566      678899999999999776666666889999999999988621           1123344433


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCccC
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      . .   ..+       .|+++|+| +|+..
T Consensus       127 ~-~---~~~-------iPiiv~iNK~D~~~  145 (526)
T PRK00741        127 C-R---LRD-------TPIFTFINKLDRDG  145 (526)
T ss_pred             H-H---hcC-------CCEEEEEECCcccc
Confidence            2 1   123       78999999 99863

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.91  E-value=0.035  Score=47.91  Aligned_cols=89  Identities=18%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             ccccccCeEE---EEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHH
Q 019426          198 ARVRTTGVVE---IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETK  274 (341)
Q Consensus       198 ~r~~T~Gi~e---~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl  274 (341)
                      +...|.||.-   +.|.     ..+.+++++||..||...|..=--||.++.++|.+-|++.       ++.-|    |+
T Consensus        49 afvsTvGidFKvKTvyr-----~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitN-------eeSf~----sv  112 (193)
T KOG0093|consen   49 AFVSTVGIDFKVKTVYR-----SDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN-------EESFN----SV  112 (193)
T ss_pred             ceeeeeeeeEEEeEeee-----cccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCC-------HHHHH----HH
Confidence            4467778752   2231     2345889999999998888777789999999999999885       11122    23


Q ss_pred             HHHHHHhcCccccCccccCCceeEEEEec-cCccCc
Q 019426          275 ELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       275 ~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      +-|-..+..-.-.+       .||||..| ||+-+.
T Consensus       113 qdw~tqIktysw~n-------aqvilvgnKCDmd~e  141 (193)
T KOG0093|consen  113 QDWITQIKTYSWDN-------AQVILVGNKCDMDSE  141 (193)
T ss_pred             HHHHHHheeeeccC-------ceEEEEecccCCccc
Confidence            33333333322223       78999998 999643

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.85  E-value=0.0053  Score=53.90  Aligned_cols=24  Identities=42%  Similarity=0.692  Sum_probs=22.0

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ++..||+++|..+|||||++++++
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~   35 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLK   35 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEEECCCccchHHHHHHhh
Confidence            567899999999999999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.84  E-value=0.0069  Score=44.56  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.7

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+|.|++||||||++..+..+-
T Consensus        26 tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   26 TLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7999999999999999998543

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.79  E-value=0.0053  Score=56.20  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.++|++||||||+++.+-.+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            68999999999999999998665

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=95.75  E-value=0.017  Score=60.64  Aligned_cols=69  Identities=16%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++.++.+||+.|+......|..++..++++++|||.++           .-+..+...|..+...    +       .
T Consensus        60 ~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~~----~-------i  117 (594)
T TIGR01394        60 RYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALEL----G-------L  117 (594)
T ss_pred             EECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHHC----C-------C
Confidence            6778999999999998888888899999999999999875           1244555666665542    2       5


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       118 p~IVviNKiD~~  129 (594)
T TIGR01394       118 KPIVVINKIDRP  129 (594)
T ss_pred             CEEEEEECCCCC
Confidence            7788898 9986

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.73  E-value=0.0065  Score=50.77  Aligned_cols=19  Identities=42%  Similarity=0.648  Sum_probs=17.8

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      |++.|++||||||+++++.
T Consensus         2 ii~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6899999999999999986

...

>cd01894 EngA1 EngA1 subfamily

Probab=95.71  E-value=0.029  Score=46.77  Aligned_cols=39  Identities=21%  Similarity=0.311  Sum_probs=30.6

Q ss_pred             cCCceeEEEecCCcccccc--------ccccccCCccEEEEEeeccC
Q 019426          218 KSGEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~--------kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+..+.+||.+|....+.        .|..++.++++++||+|..+
T Consensus        42 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~   88 (157)
T cd01894          42 WGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGRE   88 (157)
T ss_pred             ECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccc
Confidence            3456789999999977543        45567788999999999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01889 SelB_euk SelB subfamily

Probab=95.70  E-value=0.025  Score=50.05  Aligned_cols=38  Identities=13%  Similarity=0.108  Sum_probs=26.7

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+..+.+||++|+....+.-......++++++|+|.++
T Consensus        66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~  103 (192)
T cd01889          66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATK  103 (192)
T ss_pred             cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            36789999999985432222222346789999999886

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK13351 elongation factor G; Reviewed

Probab=95.68  E-value=0.019  Score=61.31  Aligned_cols=83  Identities=11%  Similarity=0.033  Sum_probs=60.0

Q ss_pred             ccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH
Q 019426          198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF  277 (341)
Q Consensus       198 ~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF  277 (341)
                      .|..|.+..-..+      .+.+..+.+||+.|+......|..++..++++|+|+|.++-.+           .....++
T Consensus        56 ~r~~ti~~~~~~~------~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~-----------~~~~~~~  118 (687)
T PRK13351         56 ERGITIESAATSC------DWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQ-----------PQTETVW  118 (687)
T ss_pred             hcCCCcccceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCC-----------HHHHHHH
Confidence            3455666555666      6778899999999998777889999999999999999886321           1233444


Q ss_pred             HHHhcCccccCccccCCceeEEEEec-cCccC
Q 019426          278 DWVLKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       278 ~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      +.+-..    +       .|+++++| +|+..
T Consensus       119 ~~~~~~----~-------~p~iiviNK~D~~~  139 (687)
T PRK13351        119 RQADRY----G-------IPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHhc----C-------CCEEEEEECCCCCC
Confidence            443221    2       68889998 99873

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=95.65  E-value=0.027  Score=60.88  Aligned_cols=69  Identities=13%  Similarity=0.118  Sum_probs=51.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||++|+......|...+..+|++|+|+|..+           ..+.++.+.+..+-.    .+       .
T Consensus       333 ~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~~----~~-------v  390 (787)
T PRK05306        333 ETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAKA----AG-------V  390 (787)
T ss_pred             EECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHHh----cC-------C
Confidence            4556789999999998888889888999999999999875           234444444433211    23       6


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       391 PiIVviNKiDl~  402 (787)
T PRK05306        391 PIIVAINKIDKP  402 (787)
T ss_pred             cEEEEEECcccc
Confidence            8999999 9986

>PRK05433 GTP-binding protein LepA; Provisional

Probab=95.63  E-value=0.019  Score=60.33  Aligned_cols=66  Identities=12%  Similarity=0.087  Sum_probs=49.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +..+.+||++|+...+..|..++..++++|+|+|.++-.+           .+++..+.....    .+       .|++
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-----------~qt~~~~~~~~~----~~-------lpiI  130 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-----------AQTLANVYLALE----ND-------LEII  130 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----CC-------CCEE
Confidence            4679999999999988899999999999999999986311           123333333322    12       5788


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +++| +|+.
T Consensus       131 vViNKiDl~  139 (600)
T PRK05433        131 PVLNKIDLP  139 (600)
T ss_pred             EEEECCCCC
Confidence            8898 9986

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=95.63  E-value=0.0073  Score=49.67  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=19.0

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|..|||||||+.++.
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~   22 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLL   22 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            699999999999999988764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04154 Arl2 Arl2 subfamily

Probab=95.59  E-value=0.0081  Score=52.01  Aligned_cols=24  Identities=33%  Similarity=0.654  Sum_probs=20.8

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...+|++++|.+++|||||++++.
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~   35 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLL   35 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHc
Confidence            355799999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=95.59  E-value=0.022  Score=53.46  Aligned_cols=80  Identities=10%  Similarity=0.117  Sum_probs=55.3

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      .|.......+      .+++..+.+||++|+......|..++..++++|+|+|.++-.+           .....+|+.+
T Consensus        50 ~ti~~~~~~~------~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-----------~~~~~~~~~~  112 (268)
T cd04170          50 MSISTSVAPL------EWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-----------VGTEKLWEFA  112 (268)
T ss_pred             ccccceeEEE------EECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-----------HHHHHHHHHH
Confidence            3444444555      5677889999999987666778888999999999999986322           1233444433


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccC
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      ..    .+       .|+++++| +|...
T Consensus       113 ~~----~~-------~p~iivvNK~D~~~  130 (268)
T cd04170         113 DE----AG-------IPRIIFINKMDRER  130 (268)
T ss_pred             HH----cC-------CCEEEEEECCccCC
Confidence            22    12       57888888 99874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=95.58  E-value=0.043  Score=57.60  Aligned_cols=64  Identities=13%  Similarity=0.066  Sum_probs=48.0

Q ss_pred             eeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEE
Q 019426          222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAF  301 (341)
Q Consensus       222 ~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf  301 (341)
                      .+.+||++|+......|..++..+|++|+|+|..+-           .+.++++.+...-    ..+       .|++++
T Consensus       136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg-----------v~~qT~e~i~~~~----~~~-------vPiIVv  193 (587)
T TIGR00487       136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG-----------VMPQTIEAISHAK----AAN-------VPIIVA  193 (587)
T ss_pred             EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC-----------CCHhHHHHHHHHH----HcC-------CCEEEE
Confidence            899999999988888888889999999999997751           2344444443221    123       689999


Q ss_pred             ec-cCcc
Q 019426          302 VA-CEHV  307 (341)
Q Consensus       302 ~n-~d~~  307 (341)
                      +| +|+.
T Consensus       194 iNKiDl~  200 (587)
T TIGR00487       194 INKIDKP  200 (587)
T ss_pred             EECcccc
Confidence            99 9986

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=95.57  E-value=0.025  Score=58.04  Aligned_cols=41  Identities=10%  Similarity=0.173  Sum_probs=30.1

Q ss_pred             ccCCceeEEEecCCccc-------cccccccccCCccEEEEEeeccCc
Q 019426          217 KKSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEY  257 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSdy  257 (341)
                      .+.+..|.++|++|...       ....+..+++.+++||||||+++.
T Consensus       202 ~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~  249 (500)
T PRK12296        202 QAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATL  249 (500)
T ss_pred             EECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCccc
Confidence            45567899999999631       123344557889999999999864

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=95.54  E-value=0.008  Score=50.53  Aligned_cols=21  Identities=43%  Similarity=0.623  Sum_probs=19.2

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .|++++|.+++|||||++++.
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~   22 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLI   22 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999998864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=95.53  E-value=0.028  Score=51.70  Aligned_cols=66  Identities=11%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +..+.+||..|+......-..++..++++|+|+|.++-           -..+...++......    +       .|++
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g-----------~~~~t~~~l~~~~~~----~-------~p~i  129 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG-----------VCVQTETVLRQALKE----R-------VKPV  129 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC-----------CCHHHHHHHHHHHHc----C-------CCEE
Confidence            56789999999987666667778999999999998751           133344555544332    2       5788


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +++| +|++
T Consensus       130 lviNKiD~~  138 (222)
T cd01885         130 LVINKIDRL  138 (222)
T ss_pred             EEEECCCcc
Confidence            9998 9986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd00879 Sar1 Sar1 subfamily

Probab=95.52  E-value=0.0081  Score=52.68  Aligned_cols=23  Identities=35%  Similarity=0.658  Sum_probs=20.4

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +..|++++|+++||||||++++.
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~   40 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLK   40 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            45799999999999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=95.52  E-value=0.03  Score=48.63  Aligned_cols=89  Identities=21%  Similarity=0.251  Sum_probs=60.3

Q ss_pred             CCccCcccceeccccc-cCeEEEEeccCCCcccCCceeEEEecCCcccc-ccccccccCCccEEEEEeeccCcccccccC
Q 019426          187 NYVPTKDDVLYARVRT-TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNE-RRKWIHLFEGVSAVIFCAAISEYDQTLFED  264 (341)
Q Consensus       187 ~Y~Pt~~DIl~~r~~T-~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~e-R~kW~~~f~~v~~IIFvvslSdydq~l~Ed  264 (341)
                      .|.||.+||..+-.-| .|..              -.++++|..|-+.. -..=.|||.-.|+.+.|-|..++-      
T Consensus        39 e~~pTiEDiY~~svet~rgar--------------E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e------   98 (198)
T KOG3883|consen   39 ELHPTIEDIYVASVETDRGAR--------------EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE------   98 (198)
T ss_pred             ccccchhhheeEeeecCCChh--------------heEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH------
Confidence            5889999997765543 2322              34789999886655 344478999999999998888751      


Q ss_pred             CCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCc
Q 019426          265 EQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEH  306 (341)
Q Consensus       265 ~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~  306 (341)
                       .-+|++.-+...+.   +..-+.       +||++++| +|.
T Consensus        99 -Sf~rv~llKk~Idk---~KdKKE-------vpiVVLaN~rdr  130 (198)
T KOG3883|consen   99 -SFQRVELLKKEIDK---HKDKKE-------VPIVVLANKRDR  130 (198)
T ss_pred             -HHHHHHHHHHHHhh---cccccc-------ccEEEEechhhc
Confidence             23554443333332   444444       89999999 887

>cd04167 Snu114p Snu114p subfamily

Probab=95.47  E-value=0.025  Score=51.07  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+.+||++|+......+..++..++++|+|+|.++
T Consensus        71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~  106 (213)
T cd04167          71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVE  106 (213)
T ss_pred             EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCC
Confidence            568999999998877788888999999999999886

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.47  E-value=0.019  Score=51.33  Aligned_cols=40  Identities=15%  Similarity=0.274  Sum_probs=36.5

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .-..+++++||++||.+.|..-..||.++.+.|.|-|+..
T Consensus        51 d~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~   90 (216)
T KOG0098|consen   51 DGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITR   90 (216)
T ss_pred             cCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccc
Confidence            5567899999999999999999999999999999999885

>CHL00189 infB translation initiation factor 2; Provisional

Probab=95.46  E-value=0.029  Score=60.24  Aligned_cols=68  Identities=10%  Similarity=0.065  Sum_probs=50.7

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      .+..+.+||++|+......|..++..++++|+|||.++-           .+..+++.+..+..    .+       .|+
T Consensus       293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k~----~~-------iPi  350 (742)
T CHL00189        293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQA----AN-------VPI  350 (742)
T ss_pred             CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHHh----cC-------ceE
Confidence            357899999999988888899999999999999998762           12333444433321    23       689


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      ++++| +|+..
T Consensus       351 IVViNKiDl~~  361 (742)
T CHL00189        351 IVAINKIDKAN  361 (742)
T ss_pred             EEEEECCCccc
Confidence            99999 99873

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.45  E-value=0.016  Score=53.45  Aligned_cols=37  Identities=30%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc-------------CCCCHHHHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ-------------TGFDEAELKSYIS   85 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~-------------~~~~~~e~~~~~~   85 (341)
                      -+.|+|++||||||+++.+..+-.             ...++.++..+|.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~   82 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR   82 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence            589999999999999999875432             1245666766665

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.45  E-value=0.037  Score=47.77  Aligned_cols=72  Identities=13%  Similarity=0.081  Sum_probs=56.2

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      -..+++.+||..||...|..=..||..++|+|.|-|+|.       .+.-..|-|=+...++-.|++.++          
T Consensus        53 gekiklqiwdtagqerfrsitqsyyrsahalilvydisc-------qpsfdclpewlreie~yan~kvlk----------  115 (213)
T KOG0095|consen   53 GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISC-------QPSFDCLPEWLREIEQYANNKVLK----------  115 (213)
T ss_pred             CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEeccc-------CcchhhhHHHHHHHHHHhhcceEE----------
Confidence            345789999999999999988999999999999999996       233456777777777777766432          


Q ss_pred             EEEEec-cCcc
Q 019426          298 ITAFVA-CEHV  307 (341)
Q Consensus       298 iilf~n-~d~~  307 (341)
                       ||..| +|+-
T Consensus       116 -ilvgnk~d~~  125 (213)
T KOG0095|consen  116 -ILVGNKIDLA  125 (213)
T ss_pred             -Eeeccccchh
Confidence             56667 7764

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=95.45  E-value=0.016  Score=58.17  Aligned_cols=49  Identities=18%  Similarity=0.256  Sum_probs=36.9

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      |..+....|      ..++..+.+||++|++...+.....+.+++++|+|+|.++
T Consensus        72 Tid~~~~~~------~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~  120 (426)
T TIGR00483        72 TIDVAHWKF------ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGD  120 (426)
T ss_pred             eEEEEEEEE------ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCC
Confidence            333444556      5677899999999987655555556678999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01892 Miro2 Miro2 subfamily

Probab=95.43  E-value=0.0085  Score=52.01  Aligned_cols=24  Identities=29%  Similarity=0.510  Sum_probs=21.4

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ++.+|++++|.+++|||||++++.
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~   25 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFL   25 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHh
Confidence            567899999999999999999763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=95.40  E-value=0.0097  Score=48.16  Aligned_cols=19  Identities=26%  Similarity=0.613  Sum_probs=17.5

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      ||+++|..++|||||++.+
T Consensus         1 ~V~iiG~~~~GKSTlin~l   19 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINAL   19 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHH
Confidence            6899999999999999875

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.31  E-value=0.01  Score=52.62  Aligned_cols=22  Identities=23%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .++|+|++||||||+++.+.-.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999998544

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=95.31  E-value=0.037  Score=58.04  Aligned_cols=40  Identities=18%  Similarity=0.125  Sum_probs=35.2

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..++..+.+||+.|+....+.+...+.+++++|+|+|.++
T Consensus        46 ~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~   85 (581)
T TIGR00475        46 PLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADE   85 (581)
T ss_pred             EeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCC
Confidence            3445789999999998888889999999999999999986

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=95.30  E-value=0.031  Score=59.67  Aligned_cols=70  Identities=9%  Similarity=0.028  Sum_probs=51.6

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||.+|+......|...+..++++|||+|.++-.           ..+...++..+-..    +       .
T Consensus        71 ~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~-----------~~~~~~~~~~~~~~----~-------~  128 (689)
T TIGR00484        71 FWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV-----------QPQSETVWRQANRY----E-------V  128 (689)
T ss_pred             EECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC-----------ChhHHHHHHHHHHc----C-------C
Confidence            677889999999999877777888999999999999987621           12233444433221    2       6


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++++| +|+..
T Consensus       129 p~ivviNK~D~~~  141 (689)
T TIGR00484       129 PRIAFVNKMDKTG  141 (689)
T ss_pred             CEEEEEECCCCCC
Confidence            7888999 99873

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=95.22  E-value=0.045  Score=54.88  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             ccCCceeEEEecCCccc--------cccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRN--------ERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~--------eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+.+..+.+||++|+..        .+..+..++.+++++|||+|.++
T Consensus        45 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~   92 (435)
T PRK00093         45 EWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRA   92 (435)
T ss_pred             EECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            34567899999999975        23445667889999999999875

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=95.20  E-value=0.047  Score=55.02  Aligned_cols=74  Identities=8%  Similarity=0.145  Sum_probs=44.9

Q ss_pred             CceeEEEecCCccc-------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhc-CccccCccc
Q 019426          220 GEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEVFFC  291 (341)
Q Consensus       220 ~~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n-~~~f~~~~~  291 (341)
                      +.+|.++|++|...       ....|....+.++++|||+|+++.+.       .+-+++-..+.+.+-. ++.+.+   
T Consensus       205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~-------~dp~e~~~~i~~EL~~y~~~L~~---  274 (424)
T PRK12297        205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEG-------RDPIEDYEKINKELKLYNPRLLE---  274 (424)
T ss_pred             CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCcccc-------CChHHHHHHHHHHHhhhchhccC---
Confidence            56899999999732       23455666778999999999987421       1111111122222222 233334   


Q ss_pred             cCCceeEEEEec-cCcc
Q 019426          292 ATSALHITAFVA-CEHV  307 (341)
Q Consensus       292 ~~~~~~iilf~n-~d~~  307 (341)
                          +|++|.+| +|+.
T Consensus       275 ----kP~IVV~NK~DL~  287 (424)
T PRK12297        275 ----RPQIVVANKMDLP  287 (424)
T ss_pred             ----CcEEEEEeCCCCc
Confidence                78888888 9974

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.20  E-value=0.012  Score=51.56  Aligned_cols=23  Identities=17%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++|+|++||||||+++++.-.+
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~   25 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARL   25 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999876543

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00503 prfC peptide chain release factor 3

Probab=95.19  E-value=0.04  Score=57.06  Aligned_cols=69  Identities=13%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.++|++|+......-..++..++++|+|+|.++--           ......+++ ++..   .+       .
T Consensus        76 ~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-----------~~~t~~l~~-~~~~---~~-------~  133 (527)
T TIGR00503        76 PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-----------ETRTRKLME-VTRL---RD-------T  133 (527)
T ss_pred             eeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-----------CHHHHHHHH-HHHh---cC-------C
Confidence            678899999999999655544444678999999999988621           111233333 2221   23       6


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++|+| +|+.
T Consensus       134 PiivviNKiD~~  145 (527)
T TIGR00503       134 PIFTFMNKLDRD  145 (527)
T ss_pred             CEEEEEECcccc
Confidence            8999999 9975

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.19  E-value=0.012  Score=48.84  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--.+
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            68999999999999999876443

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.18  E-value=0.013  Score=47.57  Aligned_cols=21  Identities=33%  Similarity=0.358  Sum_probs=18.1

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      |+|-|+.||||||+++.+.-.
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999987643

...

>cd01860 Rab5_related Rab5-related subfamily

Probab=95.18  E-value=0.012  Score=49.77  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=19.0

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|++++|||||++++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~   22 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFV   22 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999998753

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=95.17  E-value=0.012  Score=49.83  Aligned_cols=19  Identities=21%  Similarity=0.667  Sum_probs=17.7

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      ||+++|++++|||||++++
T Consensus         1 Ki~vvG~~~vGKtsl~~~~   19 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRL   19 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHH
Confidence            7999999999999999874

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.12  E-value=0.012  Score=54.74  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      =+.|+|++||||||+++-+.-+
T Consensus        31 fvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988744

>PRK12740 elongation factor G; Reviewed

Probab=95.09  E-value=0.036  Score=58.97  Aligned_cols=81  Identities=11%  Similarity=0.044  Sum_probs=59.0

Q ss_pred             cccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH
Q 019426          199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  278 (341)
Q Consensus       199 r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~  278 (341)
                      |..|.+.....|      .+++..+.++|+.|+......|..++..+|++|+|+|.++-.           ......++.
T Consensus        44 rgiTi~~~~~~~------~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~-----------~~~~~~~~~  106 (668)
T PRK12740         44 RGISITSAATTC------EWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGV-----------EPQTETVWR  106 (668)
T ss_pred             cCCCeeeceEEE------EECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCc-----------CHHHHHHHH
Confidence            455666666677      678899999999999776677888899999999999988632           123344444


Q ss_pred             HHhcCccccCccccCCceeEEEEec-cCcc
Q 019426          279 WVLKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       279 ~i~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      .+...    +       .|+++++| +|..
T Consensus       107 ~~~~~----~-------~p~iiv~NK~D~~  125 (668)
T PRK12740        107 QAEKY----G-------VPRIIFVNKMDRA  125 (668)
T ss_pred             HHHHc----C-------CCEEEEEECCCCC
Confidence            43321    2       57788888 9986

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=95.04  E-value=0.063  Score=53.89  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=37.5

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      --|..+....|      ..++..+.+||++|++...+.-.....+++++|+|+|.++
T Consensus        69 G~T~d~~~~~~------~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~  119 (425)
T PRK12317         69 GVTIDLAHKKF------ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD  119 (425)
T ss_pred             CccceeeeEEE------ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence            44555666677      6778899999999985443333344568999999999885

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=95.03  E-value=0.033  Score=50.00  Aligned_cols=36  Identities=11%  Similarity=0.054  Sum_probs=32.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+.+||+.|+....+.|.....+++++++|+|.++
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~  118 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANE  118 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCC
Confidence            578999999998888888888889999999999885

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.03  E-value=0.015  Score=47.58  Aligned_cols=19  Identities=21%  Similarity=0.429  Sum_probs=17.5

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      .++|+|++||||||+++.+
T Consensus        17 ~v~I~GpSGsGKSTLl~~l   35 (107)
T cd00820          17 GVLITGDSGIGKTELALEL   35 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHh
Confidence            5899999999999999985

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01862 Rab7 Rab7 subfamily

Probab=95.02  E-value=0.014  Score=49.72  Aligned_cols=20  Identities=30%  Similarity=0.632  Sum_probs=18.3

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+++|.++||||||++.+
T Consensus         1 ~ki~viG~~~~GKSsl~~~l   20 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQY   20 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999875

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=95.01  E-value=0.068  Score=53.40  Aligned_cols=69  Identities=17%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             ccCCceeEEEecCCcccccccc-----------ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426          217 KKSGEVYRLFDVGGQRNERRKW-----------IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  285 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW-----------~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~  285 (341)
                      ..++..+.+||.+|++..++.+           ..++..++++|+|+|.++-           -......++..+...  
T Consensus       216 ~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~-----------~~~~~~~~~~~~~~~--  282 (429)
T TIGR03594       216 ERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG-----------ITEQDLRIAGLILEA--  282 (429)
T ss_pred             EECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC-----------ccHHHHHHHHHHHHc--
Confidence            4566789999999987655443           2357789999999998851           011223344443331  


Q ss_pred             ccCccccCCceeEEEEec-cCcc
Q 019426          286 FEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       286 f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                        +       .|+++++| +|++
T Consensus       283 --~-------~~iiiv~NK~Dl~  296 (429)
T TIGR03594       283 --G-------KALVIVVNKWDLV  296 (429)
T ss_pred             --C-------CcEEEEEECcccC
Confidence              2       68899998 9998

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=94.98  E-value=0.015  Score=49.82  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=18.5

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +|++++|.+++|||||++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l   20 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKL   20 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999986

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=94.96  E-value=0.015  Score=51.26  Aligned_cols=24  Identities=33%  Similarity=0.632  Sum_probs=21.1

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +..+|++++|.+++|||||++++.
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~   38 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLK   38 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHh
Confidence            345899999999999999999874

>cd04124 RabL2 RabL2 subfamily

Probab=94.96  E-value=0.016  Score=49.66  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +||+++|.+++|||||++++.
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~   21 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFL   21 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998753

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.94  E-value=0.014  Score=50.18  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.3

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      |+|.|++||||||+++.+.-.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999998743

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.92  E-value=0.015  Score=57.14  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=19.2

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      +.|||++||||||+++.+.-+.
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999987544

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=94.92  E-value=0.019  Score=48.63  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=19.5

Q ss_pred             eEEeccCCCcchhHHHHHHhhhc
Q 019426           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~~   72 (341)
                      ++|+|++||||||+++++.-.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            57999999999999999875543

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=94.91  E-value=0.016  Score=49.39  Aligned_cols=22  Identities=41%  Similarity=0.752  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      +|+++|..++|||||++++.-.
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~   22 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTL   22 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhh
Confidence            5899999999999999997543

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01864 Rab19 Rab19 subfamily

Probab=94.91  E-value=0.016  Score=49.44  Aligned_cols=21  Identities=24%  Similarity=0.642  Sum_probs=19.2

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..|++++|.+|+|||||+.++
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l   23 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRF   23 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHH
Confidence            479999999999999999985

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=94.91  E-value=0.015  Score=56.79  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      =+.|||++||||||+++.+.-+.
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998555

>PRK08233 hypothetical protein; Provisional

Probab=94.90  E-value=0.016  Score=50.43  Aligned_cols=22  Identities=14%  Similarity=0.323  Sum_probs=18.6

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      .-|.+.|++||||||+++++.-
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4577889999999999998864

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=94.89  E-value=0.02  Score=42.61  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=18.7

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      +.+.|+.||||||+.+++.-.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.88  E-value=0.016  Score=54.61  Aligned_cols=23  Identities=39%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      =+.|+|++||||||++|.+--+.
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~l   52 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGLL   52 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            36899999999999999987544

>cd04135 Tc10 TC10 subfamily

Probab=94.84  E-value=0.017  Score=49.58  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=18.6

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|.+++|||||++++.
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~   21 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYA   21 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999997753

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.83  E-value=0.017  Score=51.23  Aligned_cols=20  Identities=30%  Similarity=0.408  Sum_probs=18.1

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      -.+.|+|++||||||++|.+
T Consensus        22 ~~~~l~G~nG~GKSTLl~~i   41 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEG   41 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999976

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd04114 Rab30 Rab30 subfamily

Probab=94.83  E-value=0.017  Score=49.23  Aligned_cols=23  Identities=22%  Similarity=0.562  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...|++++|.+++|||||++.+.
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~   28 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFT   28 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999999863

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.82  E-value=0.02  Score=51.25  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -|-|+|++|||||||++.+..+.
T Consensus        34 VisIIGsSGSGKSTfLRCiN~LE   56 (256)
T COG4598          34 VISIIGSSGSGKSTFLRCINFLE   56 (256)
T ss_pred             EEEEecCCCCchhHHHHHHHhhc
Confidence            47899999999999999998776

>TIGR03263 guanyl_kin guanylate kinase

Probab=94.79  E-value=0.018  Score=50.33  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .++|+|++||||||+++.+.-.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5799999999999999988653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK03839 putative kinase; Provisional

Probab=94.78  E-value=0.018  Score=50.58  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+|+|..||||||+.+++.-.+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999986544

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=94.76  E-value=0.019  Score=48.60  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=18.3

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      +++.|.+||||||+++++.-.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhh
Confidence            689999999999999987643

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=94.75  E-value=0.018  Score=51.90  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=18.9

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -++|+|++||||||++|++..
T Consensus        27 ~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          27 GILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             EEEEECCCCCChHHHHHHHHH
Confidence            568999999999999999973

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd04136 Rap_like Rap-like subfamily

Probab=94.73  E-value=0.019  Score=48.46  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|..++|||||++++.
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~   22 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFV   22 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999988754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=94.72  E-value=0.02  Score=48.48  Aligned_cols=21  Identities=29%  Similarity=0.661  Sum_probs=18.8

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +||+++|.+++|||||++++.
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~   21 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFV   21 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            489999999999999999754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=94.68  E-value=0.02  Score=49.24  Aligned_cols=20  Identities=30%  Similarity=0.717  Sum_probs=18.5

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      |++|+|+.|||||||+..+.
T Consensus         3 rimliG~~g~GKTTL~q~L~   22 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALN   22 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHc
Confidence            89999999999999998765

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01868 Rab11_like Rab11-like

Probab=94.68  E-value=0.02  Score=48.72  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+|++++|.+++|||||++++.
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~   24 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFT   24 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            3699999999999999999873

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PRK00300 gmk guanylate kinase; Provisional

Probab=94.66  E-value=0.02  Score=51.17  Aligned_cols=24  Identities=29%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .-++|+|++||||||+++++.-.+
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            368999999999999999986554

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=94.65  E-value=0.085  Score=53.48  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=31.5

Q ss_pred             ccCCceeEEEecCCcccccccc--------ccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW--------~~~f~~v~~IIFvvslSd  256 (341)
                      .+++..+.+||+.|++.....|        ..++.+++++|||+|.++
T Consensus       247 ~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~  294 (442)
T TIGR00450       247 ELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ  294 (442)
T ss_pred             EECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            5677889999999997543322        356789999999999986

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=94.65  E-value=0.02  Score=50.40  Aligned_cols=24  Identities=33%  Similarity=0.639  Sum_probs=20.9

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ++.+||+++|.++||||||++++.
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~   38 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLK   38 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHc
Confidence            445899999999999999999764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=94.65  E-value=0.02  Score=50.04  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=19.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..++++|++||||||+++.+.--
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~   26 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEK   26 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999987643

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=94.65  E-value=0.021  Score=49.24  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=18.7

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +||+++|.+|+|||||++++.
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~   21 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYL   21 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            489999999999999998753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>TIGR00235 udk uridine kinase

Probab=94.62  E-value=0.02  Score=51.59  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=19.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .-+.|.|++||||||+++.+.-+
T Consensus         7 ~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         7 IIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999988644

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=94.62  E-value=0.022  Score=45.75  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..++|.|+.|+||||+++.+-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~   26 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAREL   26 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcc
Confidence            368999999999999999876443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.61  E-value=0.022  Score=50.82  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=19.1

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      |.|.|++||||||+++.+.-+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999986554

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd04127 Rab27A Rab27a subfamily

Probab=94.61  E-value=0.021  Score=49.39  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.7

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+|++++|.+++|||||++++
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~   24 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQY   24 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHH
Confidence            3479999999999999999875

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.60  E-value=0.022  Score=53.55  Aligned_cols=22  Identities=45%  Similarity=0.702  Sum_probs=19.4

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      ++++|++||||||++|.+-.+.
T Consensus        30 ~vliGpSGsGKTTtLkMINrLi   51 (309)
T COG1125          30 LVLIGPSGSGKTTTLKMINRLI   51 (309)
T ss_pred             EEEECCCCCcHHHHHHHHhccc
Confidence            6899999999999999997554

>TIGR01351 adk adenylate kinases

Probab=94.60  E-value=0.021  Score=51.59  Aligned_cols=23  Identities=43%  Similarity=0.583  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ||+|+|++||||||+.+++.--|
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999986443

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=94.59  E-value=0.022  Score=49.84  Aligned_cols=22  Identities=36%  Similarity=0.472  Sum_probs=19.0

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      |+++|++||||||+.+++.--+
T Consensus         2 i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            6899999999999999886544

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=94.59  E-value=0.021  Score=50.86  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=19.0

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +||+++|.+++|||||++++.
T Consensus         1 ~KivivG~~~vGKTsli~~l~   21 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYV   21 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999854

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=94.59  E-value=0.022  Score=48.83  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=18.5

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|.+++|||||+.++.
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~   21 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFT   21 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHh
Confidence            489999999999999997753

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=94.57  E-value=0.023  Score=50.03  Aligned_cols=24  Identities=33%  Similarity=0.649  Sum_probs=21.2

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ++..|++++|.+++||||+++++.
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~   38 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLK   38 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHh
Confidence            456899999999999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PRK13949 shikimate kinase; Provisional

Probab=94.57  E-value=0.022  Score=50.02  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+|+|+.||||||+.+.+.-..
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l   25 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAREL   25 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            79999999999999999886443

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=94.55  E-value=0.08  Score=52.04  Aligned_cols=38  Identities=18%  Similarity=0.149  Sum_probs=27.5

Q ss_pred             CCceeEEEecCCc-cc--------cccccccccCCccEEEEEeeccCc
Q 019426          219 SGEVYRLFDVGGQ-RN--------ERRKWIHLFEGVSAVIFCAAISEY  257 (341)
Q Consensus       219 ~~~~~~l~DvgGq-r~--------eR~kW~~~f~~v~~IIFvvslSdy  257 (341)
                      ++..+.+||..|. +.        .++.| ..+.+++.||+|+|.++-
T Consensus       235 ~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~  281 (351)
T TIGR03156       235 DGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDP  281 (351)
T ss_pred             CCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCC
Confidence            4678999999998 32        11222 236689999999999973

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK14530 adenylate kinase; Provisional

Probab=94.53  E-value=0.025  Score=51.24  Aligned_cols=24  Identities=38%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+|+|+|+.||||||+.+.+.-.+
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999986555

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=94.50  E-value=0.024  Score=49.88  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+|+|+.||||||+.+++.--+
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999986544

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=94.50  E-value=0.024  Score=49.32  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..|++++|.+++|||||++++.
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~   36 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFL   36 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHc
Confidence            5799999999999999998874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=94.49  E-value=0.023  Score=48.72  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.8

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+||+++|++++|||||+.++.
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~   24 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFS   24 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            4799999999999999999864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04140 ARHI_like ARHI subfamily

Probab=94.48  E-value=0.024  Score=48.55  Aligned_cols=21  Identities=29%  Similarity=0.593  Sum_probs=19.0

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +||+++|.+++|||||++++.
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~   22 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFV   22 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=94.48  E-value=0.021  Score=49.29  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=17.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ||+|.|+.++||||+++.+.-.
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999998755

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=94.48  E-value=0.023  Score=51.19  Aligned_cols=22  Identities=41%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+|++++|.+|||||||++++
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~   29 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRH   29 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHH
Confidence            3479999999999999999653

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=94.47  E-value=0.024  Score=47.55  Aligned_cols=20  Identities=20%  Similarity=0.513  Sum_probs=17.7

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      +|+|+|.+|+|||||++.+.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~   20 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALT   20 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHh
Confidence            47999999999999999753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=94.46  E-value=0.024  Score=48.07  Aligned_cols=20  Identities=15%  Similarity=0.338  Sum_probs=18.0

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +|++++|.++||||||++.+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l   20 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMF   20 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=94.46  E-value=0.024  Score=49.44  Aligned_cols=23  Identities=30%  Similarity=0.621  Sum_probs=20.4

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+||+++|.+++|||||++++.
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~   34 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLK   34 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHh
Confidence            45899999999999999998863

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=94.45  E-value=0.03  Score=57.05  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHH----hhcccceEEeccCCCcchhHHH
Q 019426           31 AEIERRIEQETKA----EKHIQKLLLLGAGESGKSTIFK   65 (341)
Q Consensus        31 ~~Id~~L~~~~~~----~~~~~kiLllG~~eSGKST~~k   65 (341)
                      ++||+.++.--+.    ...---+.|+|++||||||+++
T Consensus        12 r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        12 RKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             hHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence            4556555443322    1222368999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=94.44  E-value=0.025  Score=49.28  Aligned_cols=22  Identities=41%  Similarity=0.572  Sum_probs=19.6

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+|++++|.+++|||||++++.
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~   23 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFI   23 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH
Confidence            4799999999999999998764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.42  E-value=0.024  Score=50.98  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--++
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987554

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.42  E-value=0.024  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--+.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            68999999999999999886544

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd01870 RhoA_like RhoA-like subfamily

Probab=94.42  E-value=0.025  Score=48.64  Aligned_cols=21  Identities=29%  Similarity=0.654  Sum_probs=18.6

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .|++++|.+++|||||++++.
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~   22 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFS   22 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            489999999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=94.41  E-value=0.025  Score=50.81  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=19.6

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      -+++|.|++||||||++|++.
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHH
Confidence            379999999999999999998

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=94.41  E-value=0.026  Score=47.77  Aligned_cols=21  Identities=38%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+|++++|.+++||||+++.+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~   22 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQF   22 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHH
Confidence            479999999999999998875

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=94.40  E-value=0.024  Score=51.85  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--+.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          28 IHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            68999999999999999886443

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=94.40  E-value=0.025  Score=48.78  Aligned_cols=21  Identities=43%  Similarity=0.653  Sum_probs=18.7

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|+.++|||||++++.
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~   21 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHL   21 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999998753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.38  E-value=0.025  Score=51.11  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=94.38  E-value=0.024  Score=50.36  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+.-+.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            78999999999999999887543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd04116 Rab9 Rab9 subfamily

Probab=94.37  E-value=0.026  Score=48.37  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=20.1

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+|++++|.+++|||||++++.
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~   26 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYV   26 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHH
Confidence            34799999999999999999763

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=94.37  E-value=0.066  Score=56.21  Aligned_cols=35  Identities=14%  Similarity=-0.015  Sum_probs=32.2

Q ss_pred             eeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       222 ~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+.+||++|+...+..|..++..++++|+|+|.++
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~  104 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINE  104 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCc
Confidence            48899999998888889999999999999999885

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04163 Era Era subfamily

Probab=94.37  E-value=0.027  Score=47.01  Aligned_cols=38  Identities=18%  Similarity=0.225  Sum_probs=28.0

Q ss_pred             CceeEEEecCCcccccc--------ccccccCCccEEEEEeeccCc
Q 019426          220 GEVYRLFDVGGQRNERR--------KWIHLFEGVSAVIFCAAISEY  257 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~--------kW~~~f~~v~~IIFvvslSdy  257 (341)
                      +..+.+||.+|......        .+.+.+.++++++||+|.++.
T Consensus        50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~   95 (168)
T cd04163          50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP   95 (168)
T ss_pred             CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc
Confidence            35688999999753322        234557889999999999974

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.36  E-value=0.025  Score=50.92  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|-|--+.
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999886554

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=94.36  E-value=0.025  Score=51.84  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=18.5

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      +.|.|++||||||+++.+.-+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l   23 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALL   23 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHH
Confidence            5688999999999999887544

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.35  E-value=0.026  Score=50.80  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--++
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999987554

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.35  E-value=0.027  Score=51.62  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=18.9

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..++|++|||||||+|.+-.+.
T Consensus        36 TAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHhhc
Confidence            5789999999999999887554

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.35  E-value=0.025  Score=50.64  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999886554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=94.34  E-value=0.028  Score=45.76  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=18.4

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      |||.|+.|+||||+++.+--.
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            699999999999999987643

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd04159 Arl10_like Arl10-like subfamily

Probab=94.34  E-value=0.027  Score=46.73  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=17.8

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      .|+++|++++|||||++++.
T Consensus         1 ~i~i~G~~~~GKssl~~~l~   20 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIA   20 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHc
Confidence            37899999999999999874

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=94.34  E-value=0.027  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -|+|.|++||||||+.|.+.-..
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            37899999999999999887443

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd01895 EngA2 EngA2 subfamily

Probab=94.33  E-value=0.027  Score=47.54  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      .++++++|..++||||+++++
T Consensus         2 ~~~i~i~G~~~~GKstli~~l   22 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNAL   22 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHH
Confidence            468999999999999999875

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=94.33  E-value=0.026  Score=50.77  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=21.4

Q ss_pred             cccceEEeccCCCcchhHHHHHHhhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +...|.|.|++|||||||++.+.-..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            44679999999999999999876443

>cd04149 Arf6 Arf6 subfamily

Probab=94.33  E-value=0.027  Score=48.88  Aligned_cols=23  Identities=35%  Similarity=0.652  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +.+|++++|.+++|||||++++.
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~   30 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLK   30 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHc
Confidence            45799999999999999999764

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04151 Arl1 Arl1 subfamily

Probab=94.32  E-value=0.027  Score=47.77  Aligned_cols=20  Identities=35%  Similarity=0.788  Sum_probs=18.5

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      |++++|.+++|||||++++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~   20 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQ   20 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHc
Confidence            78999999999999999974

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01893 Miro1 Miro1 subfamily

Probab=94.31  E-value=0.027  Score=48.31  Aligned_cols=21  Identities=24%  Similarity=0.532  Sum_probs=18.9

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|.+++|||||++++.
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~   21 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLV   21 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999864

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=94.31  E-value=0.09  Score=52.47  Aligned_cols=75  Identities=9%  Similarity=0.134  Sum_probs=46.4

Q ss_pred             ceeEEEecCCcccc-------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC-ccccCcccc
Q 019426          221 EVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEVFFCA  292 (341)
Q Consensus       221 ~~~~l~DvgGqr~e-------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~-~~f~~~~~~  292 (341)
                      ..+.++|+.|...-       ..+.....+.+++++||+|++.+|.       .+.+++-..+.+.+... +.+.+    
T Consensus       207 ~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~-------~d~~e~~~~l~~eL~~~~~~L~~----  275 (390)
T PRK12298        207 RSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDG-------SDPVENARIIINELEKYSPKLAE----  275 (390)
T ss_pred             cEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccc-------cChHHHHHHHHHHHHhhhhhhcC----
Confidence            46999999997421       1233445789999999999986531       12233333344444432 33333    


Q ss_pred             CCceeEEEEec-cCccCc
Q 019426          293 TSALHITAFVA-CEHVSG  309 (341)
Q Consensus       293 ~~~~~iilf~n-~d~~~~  309 (341)
                         .|++|.+| +|++..
T Consensus       276 ---kP~IlVlNKiDl~~~  290 (390)
T PRK12298        276 ---KPRWLVFNKIDLLDE  290 (390)
T ss_pred             ---CCEEEEEeCCccCCh
Confidence               67787788 998743

>PRK14532 adenylate kinase; Provisional

Probab=94.31  E-value=0.027  Score=49.72  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+++|+.||||||+.+.+.--+
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999886444

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.28  E-value=0.027  Score=49.85  Aligned_cols=23  Identities=43%  Similarity=0.615  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887554

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=94.24  E-value=0.028  Score=50.66  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999886443

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=94.23  E-value=0.026  Score=60.39  Aligned_cols=25  Identities=36%  Similarity=0.610  Sum_probs=22.9

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      -++.|+|.+||||||++|.|.-+|.
T Consensus       500 e~vaIvG~SGsGKSTL~KLL~gly~  524 (709)
T COG2274         500 EKVAIVGRSGSGKSTLLKLLLGLYK  524 (709)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4799999999999999999998884

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=94.23  E-value=0.03  Score=46.67  Aligned_cols=38  Identities=29%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             cCCceeEEEecCCccccc---------cccccccCCccEEEEEeeccC
Q 019426          218 KSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR---------~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+..+.+||++|.....         +.| .++..++++++|+|.++
T Consensus        46 ~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~d~~~   92 (157)
T cd04164          46 IGGIPVRLIDTAGIRETEDEIEKIGIERAR-EAIEEADLVLFVIDASR   92 (157)
T ss_pred             eCCEEEEEEECCCcCCCcchHHHHHHHHHH-HHHhhCCEEEEEEECCC
Confidence            345578999999974321         122 35678999999999996

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=94.21  E-value=0.028  Score=50.48  Aligned_cols=23  Identities=39%  Similarity=0.648  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.20  E-value=0.029  Score=50.46  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+--++
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999987554

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=94.20  E-value=0.028  Score=50.90  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=94.19  E-value=0.03  Score=47.29  Aligned_cols=20  Identities=45%  Similarity=0.780  Sum_probs=18.1

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      ||+++|.+++||||+++++.
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~   20 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLK   20 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHh
Confidence            68999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=94.19  E-value=0.03  Score=46.52  Aligned_cols=19  Identities=21%  Similarity=0.620  Sum_probs=17.7

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      ||+++|.+++|||||++++
T Consensus         2 kv~liG~~~vGKSsL~~~l   20 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQAL   20 (142)
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            8999999999999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.19  E-value=0.029  Score=50.41  Aligned_cols=23  Identities=35%  Similarity=0.600  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.|--+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999886543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=94.19  E-value=0.028  Score=51.62  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--++
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999887554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.18  E-value=0.029  Score=51.43  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=94.18  E-value=0.029  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|-+--++
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=94.17  E-value=0.057  Score=50.53  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=22.6

Q ss_pred             HHhhcccceEEeccCCCcchhHHHHHH
Q 019426           42 KAEKHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        42 ~~~~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +......+|+|+|.+|+||||+++.+-
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLl   52 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIF   52 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHh
Confidence            445667899999999999999998753

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=94.16  E-value=0.029  Score=50.90  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        15 ~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         15 HIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            67899999999999999987543

>PLN03108 Rab family protein; Provisional

Probab=94.16  E-value=0.03  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+|++|+|+.++|||||++++.
T Consensus         6 ~~kivivG~~gvGKStLi~~l~   27 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFT   27 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999864

>PRK11058 GTPase HflX; Provisional

Probab=94.15  E-value=0.13  Score=52.02  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=41.7

Q ss_pred             eeEEEecCCcccc--------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccC
Q 019426          222 VYRLFDVGGQRNE--------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCAT  293 (341)
Q Consensus       222 ~~~l~DvgGqr~e--------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~  293 (341)
                      .+.+||..|.-..        -+.+...+.+++++|+|+|.|+-           ...+.+..+..++..-.-.+     
T Consensus       246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~-----------~~~e~l~~v~~iL~el~~~~-----  309 (426)
T PRK11058        246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADV-----------RVQENIEAVNTVLEEIDAHE-----  309 (426)
T ss_pred             eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCc-----------cHHHHHHHHHHHHHHhccCC-----
Confidence            7899999998322        12234446789999999999862           12233333333322110112     


Q ss_pred             CceeEEEEec-cCccC
Q 019426          294 SALHITAFVA-CEHVS  308 (341)
Q Consensus       294 ~~~~iilf~n-~d~~~  308 (341)
                        .|+++..| +|+..
T Consensus       310 --~pvIiV~NKiDL~~  323 (426)
T PRK11058        310 --IPTLLVMNKIDMLD  323 (426)
T ss_pred             --CCEEEEEEcccCCC
Confidence              67888888 99973

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=94.14  E-value=0.03  Score=50.72  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        33 ~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999986544

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=94.14  E-value=0.029  Score=52.59  Aligned_cols=21  Identities=38%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -+.|+|++||||||++|-+--
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999998763

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=94.14  E-value=0.03  Score=50.38  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887554

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd04132 Rho4_like Rho4-like subfamily

Probab=94.14  E-value=0.031  Score=48.81  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=18.9

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +||+++|..++|||||++++.
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~   21 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYS   21 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999763

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=94.13  E-value=0.031  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.8

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..|++++|.+++|||||++++.
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~   25 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFT   25 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999863

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>COG4639 Predicted kinase [General function prediction only]

Probab=94.13  E-value=0.029  Score=48.86  Aligned_cols=18  Identities=50%  Similarity=0.597  Sum_probs=16.5

Q ss_pred             ceEEeccCCCcchhHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQ   66 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq   66 (341)
                      =++|.|+++|||||++|+
T Consensus         4 LvvL~G~~~sGKsT~ak~   21 (168)
T COG4639           4 LVVLRGASGSGKSTFAKE   21 (168)
T ss_pred             EEEEecCCCCchhHHHHH
Confidence            378999999999999998

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=94.12  E-value=0.03  Score=50.66  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+.-+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999886443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=94.12  E-value=0.11  Score=51.81  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=30.6

Q ss_pred             ccCCceeEEEecCCcc--------ccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr--------~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+.+..+.+||.||..        ..+..+..++.++++|+||+|..+
T Consensus        43 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~   90 (429)
T TIGR03594        43 EWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGRE   90 (429)
T ss_pred             EECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence            4566789999999963        233445667889999999999875

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=94.12  E-value=0.03  Score=50.55  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          33 VTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999987554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd04118 Rab24 Rab24 subfamily

Probab=94.11  E-value=0.031  Score=49.12  Aligned_cols=21  Identities=24%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +||+++|.+++|||||++++.
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~   21 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYV   21 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999863

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.09  E-value=0.03  Score=52.04  Aligned_cols=23  Identities=43%  Similarity=0.726  Sum_probs=20.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .++|+|++||||||+++.+--+.
T Consensus        32 ~~~i~G~nGsGKSTL~~~l~GLl   54 (235)
T COG1122          32 RVLLIGPNGSGKSTLLKLLNGLL   54 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHcCcC
Confidence            78999999999999999998555

>cd04158 ARD1 ARD1 subfamily

Probab=94.09  E-value=0.032  Score=48.14  Aligned_cols=20  Identities=35%  Similarity=0.647  Sum_probs=18.1

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      |++++|.+++|||||++++.
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~   20 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLK   20 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999764

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=94.06  E-value=0.031  Score=50.62  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999886543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=94.06  E-value=0.033  Score=48.69  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+..+++++|.+++|||||++++
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l   38 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINAL   38 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHH
Confidence            45679999999999999999864

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=94.05  E-value=0.031  Score=50.30  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          27 FLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            68999999999999999886554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=94.05  E-value=0.032  Score=50.91  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=20.9

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|.|--++
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410        27 EVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999887554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PTZ00088 adenylate kinase 1; Provisional

Probab=94.04  E-value=0.038  Score=51.12  Aligned_cols=25  Identities=28%  Similarity=0.278  Sum_probs=21.5

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+|+|+|++||||||+.+++.-.|
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            3679999999999999999986544

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=94.04  E-value=0.032  Score=51.21  Aligned_cols=22  Identities=36%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++|||||||+|.+--+
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        28 IHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998754

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=94.04  E-value=0.032  Score=51.16  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--++
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          29 FVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999987554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=94.03  E-value=0.032  Score=50.88  Aligned_cols=23  Identities=39%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--+.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          28 IVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=94.03  E-value=0.032  Score=50.98  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.|--++
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          33 IFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999987554

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=94.02  E-value=0.039  Score=53.67  Aligned_cols=28  Identities=29%  Similarity=0.548  Sum_probs=24.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhcCCC
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQTGF   75 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~~~~   75 (341)
                      .+++|+|++|+||||+++.+...+...+
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~  190 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTTS  190 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence            4899999999999999999998876554

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=94.02  E-value=0.047  Score=49.71  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=19.7

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      +.++|++||||||+++.+..++
T Consensus        28 ~~ivGpNGaGKSTll~~i~~~~   49 (212)
T cd03274          28 SAIVGPNGSGKSNVIDSMLFVF   49 (212)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999998665

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=94.02  E-value=0.033  Score=48.91  Aligned_cols=23  Identities=43%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999886443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=94.02  E-value=0.033  Score=49.80  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|-+--++
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987554

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.02  E-value=0.033  Score=48.99  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.++|+|++||||||+++.+--+.
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999987554

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.00  E-value=0.072  Score=43.21  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             ccceEEeccCCCcchhHHHHHHhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..-+++.|+.|+||||+++.+.-.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999988644

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=93.98  E-value=0.076  Score=48.68  Aligned_cols=37  Identities=19%  Similarity=0.244  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHh
Q 019426           33 IERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        33 Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      +-+.|+.-.+...+..-+.|.|++|||||||++.+.-
T Consensus        19 l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~   55 (229)
T PRK09270         19 LLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEA   55 (229)
T ss_pred             HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3334444333334556788999999999999997763

>PRK06547 hypothetical protein; Provisional

Probab=93.97  E-value=0.054  Score=47.82  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+...|++.|++||||||+.+.+.
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~   36 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALA   36 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            455678888999999999998874

>PRK02496 adk adenylate kinase; Provisional

Probab=93.96  E-value=0.041  Score=48.42  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+++++|++||||||+++.+.-.+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999986544

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=93.96  E-value=0.033  Score=50.95  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        37 ~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         37 MMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987543

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=93.96  E-value=0.034  Score=50.48  Aligned_cols=24  Identities=42%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||++-+--++
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          32 ETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999887554

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14531 adenylate kinase; Provisional

Probab=93.94  E-value=0.042  Score=48.59  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+++|+.||||||+.+.+.--+
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999886544

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=93.92  E-value=0.035  Score=50.61  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.|.-++
T Consensus        35 ~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          35 VMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhCcc
Confidence            68999999999999999987544

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=93.92  E-value=0.036  Score=48.46  Aligned_cols=23  Identities=39%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|-+--++
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          28 IYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999886554

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=93.91  E-value=0.036  Score=49.37  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .+.|+|++||||||++|-+--
T Consensus        35 ~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          35 LTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999998874

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=93.90  E-value=0.036  Score=48.63  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          30 KIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999987554

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=93.89  E-value=0.037  Score=48.04  Aligned_cols=23  Identities=39%  Similarity=0.556  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--+.
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999886543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=93.89  E-value=0.035  Score=50.98  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+|+|++||||||+++.+..+.
T Consensus        25 ~~~i~GpNGsGKStll~ai~~~l   47 (243)
T cd03272          25 HNVVVGRNGSGKSNFFAAIRFVL   47 (243)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999987554

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK15494 era GTPase Era; Provisional

Probab=93.87  E-value=0.15  Score=49.77  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=27.1

Q ss_pred             cCCceeEEEecCCcccc---------ccccccccCCccEEEEEeeccC
Q 019426          218 KSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~e---------R~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .++..+.+||++|+...         |..|. ++.+++++|||+|.++
T Consensus        97 ~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~-~l~~aDvil~VvD~~~  143 (339)
T PRK15494         97 LKDTQVILYDTPGIFEPKGSLEKAMVRCAWS-SLHSADLVLLIIDSLK  143 (339)
T ss_pred             eCCeEEEEEECCCcCCCcccHHHHHHHHHHH-HhhhCCEEEEEEECCC
Confidence            44567899999998421         12232 4789999999999764

>cd01874 Cdc42 Cdc42 subfamily

Probab=93.86  E-value=0.038  Score=48.28  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.1

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|.+++|||||++++.
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~   22 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYT   22 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999998764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=93.85  E-value=0.18  Score=44.83  Aligned_cols=76  Identities=13%  Similarity=0.199  Sum_probs=50.5

Q ss_pred             ccCCceeEEEecCCcccc-----------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426          217 KKSGEVYRLFDVGGQRNE-----------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  285 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~e-----------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~  285 (341)
                      .+.+..+.++|..|-...           .+.+..+..++++||||+++..+         +..-.+.++.+..++....
T Consensus        45 ~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~---------t~~d~~~l~~l~~~fg~~~  115 (196)
T cd01852          45 VWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF---------TEEEEQAVETLQELFGEKV  115 (196)
T ss_pred             EECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc---------CHHHHHHHHHHHHHhChHh
Confidence            456778999999985321           11123345789999999998764         2334556777777776443


Q ss_pred             ccCccccCCceeEEEEeccCccCc
Q 019426          286 FEVFFCATSALHITAFVACEHVSG  309 (341)
Q Consensus       286 f~~~~~~~~~~~iilf~n~d~~~~  309 (341)
                      +.        ..|++|+++|.+..
T Consensus       116 ~~--------~~ivv~T~~d~l~~  131 (196)
T cd01852         116 LD--------HTIVLFTRGDDLEG  131 (196)
T ss_pred             Hh--------cEEEEEECccccCC
Confidence            33        35788888998843

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.85  E-value=0.036  Score=51.42  Aligned_cols=23  Identities=26%  Similarity=0.550  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        32 ~VaiIG~SGaGKSTLLR~lngl~   54 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNGLV   54 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            58999999999999999987544

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=93.85  E-value=0.036  Score=51.35  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        34 ~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         34 VTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999998744

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.84  E-value=0.037  Score=49.50  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++||||||+++.+--++
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999886554

>cd01884 EF_Tu EF-Tu subfamily

Probab=93.84  E-value=0.16  Score=45.64  Aligned_cols=40  Identities=13%  Similarity=0.217  Sum_probs=30.5

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..++..+.++|+.|....-+--......++++++|||.++
T Consensus        61 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~  100 (195)
T cd01884          61 ETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD  100 (195)
T ss_pred             cCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCC
Confidence            5667789999999986544444445668999999999875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=93.83  E-value=0.036  Score=50.91  Aligned_cols=23  Identities=39%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|-+--++
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          30 LVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=93.82  E-value=0.039  Score=49.17  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=18.7

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      |.|-|++|||||||++++.-..
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L   23 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQIL   23 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5688999999999999887544

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=93.82  E-value=0.037  Score=50.34  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|-+--+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999987554

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=93.82  E-value=0.037  Score=56.94  Aligned_cols=25  Identities=32%  Similarity=0.563  Sum_probs=22.3

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      -++.|+|++||||||++|.+--+|.
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~~~  386 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGLLD  386 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4899999999999999999887764

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK06762 hypothetical protein; Provisional

Probab=93.82  E-value=0.04  Score=47.50  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+++.|.+||||||+++++.-.+
T Consensus         4 li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          4 LIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999987554

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=93.81  E-value=0.037  Score=51.56  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=21.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++||||||++|.+--++
T Consensus        33 e~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         33 EVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            379999999999999999987554

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=93.81  E-value=0.037  Score=50.37  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.0

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|.+--++
T Consensus        37 e~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         37 ETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            378999999999999999987654

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.81  E-value=0.037  Score=50.09  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=20.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.|--++
T Consensus        39 ~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         39 ALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987654

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=93.81  E-value=0.039  Score=48.06  Aligned_cols=23  Identities=35%  Similarity=0.748  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+--+.
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223          29 RLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999887543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=93.81  E-value=0.037  Score=50.62  Aligned_cols=23  Identities=39%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        14 ~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        14 VLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987554

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=93.80  E-value=0.038  Score=50.32  Aligned_cols=23  Identities=17%  Similarity=0.501  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          31 TVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCc
Confidence            58999999999999999987443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=93.79  E-value=0.04  Score=48.62  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+|++++|.+++|||||++.+.
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~   26 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFI   26 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            4799999999999999988643

>PRK12739 elongation factor G; Reviewed

Probab=93.78  E-value=0.099  Score=55.95  Aligned_cols=81  Identities=9%  Similarity=-0.012  Sum_probs=57.8

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .-|.-.....|      .+++..+.++|+.|+......|......+|++|+|||.++=           -......++..
T Consensus        58 giti~~~~~~~------~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g-----------~~~qt~~i~~~  120 (691)
T PRK12739         58 GITITSAATTC------FWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG-----------VEPQSETVWRQ  120 (691)
T ss_pred             CCCccceeEEE------EECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC-----------CCHHHHHHHHH
Confidence            33444445556      67888999999999977777788889999999999997751           12233455555


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCccC
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      +...    +       .|+++++| +|++.
T Consensus       121 ~~~~----~-------~p~iv~iNK~D~~~  139 (691)
T PRK12739        121 ADKY----G-------VPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHc----C-------CCEEEEEECCCCCC
Confidence            4332    2       67889998 99873

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=93.78  E-value=0.038  Score=49.84  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||++.+--++
T Consensus        24 e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          24 EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             eeEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999987554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF05729 NACHT: NACHT domain

Probab=93.78  E-value=0.041  Score=46.52  Aligned_cols=19  Identities=37%  Similarity=0.637  Sum_probs=16.9

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      ++|.|.+|+||||+++.+-
T Consensus         3 l~I~G~~G~GKStll~~~~   21 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLA   21 (166)
T ss_pred             EEEECCCCCChHHHHHHHH
Confidence            6899999999999998654

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=93.77  E-value=0.038  Score=51.48  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=20.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        32 ~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         32 VTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999987654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=93.77  E-value=0.039  Score=49.46  Aligned_cols=20  Identities=25%  Similarity=0.516  Sum_probs=18.8

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      .++|.|++||||||++|++.
T Consensus        30 ~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          30 VLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            49999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=93.77  E-value=0.039  Score=49.22  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        28 ALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999886554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=93.76  E-value=0.039  Score=48.62  Aligned_cols=23  Identities=13%  Similarity=0.089  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          28 IVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=93.76  E-value=0.04  Score=48.39  Aligned_cols=21  Identities=24%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+||+++|.++||||||++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~   23 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRL   23 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHH
Confidence            379999999999999999986

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=93.71  E-value=0.042  Score=46.37  Aligned_cols=20  Identities=40%  Similarity=0.788  Sum_probs=18.2

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      |++++|..++||||+++++-
T Consensus         1 ki~iiG~~~~GKssli~~~~   20 (158)
T cd00878           1 RILILGLDGAGKTTILYKLK   20 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHh
Confidence            78999999999999999764

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=93.69  E-value=0.041  Score=49.38  Aligned_cols=23  Identities=35%  Similarity=0.374  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          28 IYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999987443

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=93.69  E-value=0.04  Score=50.89  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         31 VVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999886543

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=93.69  E-value=0.04  Score=50.73  Aligned_cols=23  Identities=43%  Similarity=0.618  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295          29 FLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999987554

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=93.69  E-value=0.04  Score=51.45  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         29 LLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887543

>PRK00279 adk adenylate kinase; Reviewed

Probab=93.68  E-value=0.048  Score=49.41  Aligned_cols=23  Identities=39%  Similarity=0.523  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+++|+.||||||+.+.+.-.|
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~   24 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKY   24 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999886444

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.66  E-value=0.042  Score=48.95  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+--+.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999887554

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=93.65  E-value=0.042  Score=49.42  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++||||||++|.+--++
T Consensus        25 e~~~l~G~nGsGKSTLl~~l~gl~   48 (211)
T cd03298          25 EITAIVGPSGSGKSTLLNLIAGFE   48 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999887554

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=93.64  E-value=0.085  Score=46.77  Aligned_cols=24  Identities=25%  Similarity=0.494  Sum_probs=19.9

Q ss_pred             ccceEEeccCCCcchhHHHHHHhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .-.+++.|+.||||||+++.+--+
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347899999999999999976533

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK10908 cell division protein FtsE; Provisional

Probab=93.64  E-value=0.042  Score=49.87  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|.+--++
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         29 EMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999987554

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=93.64  E-value=0.044  Score=47.32  Aligned_cols=20  Identities=30%  Similarity=0.617  Sum_probs=18.0

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      +|+++|.+++|||||++++.
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~   20 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQ   20 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999764

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=93.63  E-value=0.041  Score=50.37  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          30 VVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCc
Confidence            78999999999999999887543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=93.62  E-value=0.044  Score=46.62  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++|||||||++-+--++
T Consensus        28 ~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          28 RIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            57899999999999999886554

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.62  E-value=0.043  Score=49.42  Aligned_cols=23  Identities=39%  Similarity=0.605  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+--++
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         30 ALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887554

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=93.61  E-value=0.053  Score=53.92  Aligned_cols=39  Identities=28%  Similarity=0.467  Sum_probs=30.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc----------CCCCHHHHHHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ----------TGFDEAELKSYISVI   87 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~----------~~~~~~e~~~~~~~I   87 (341)
                      =+.|+|.+||||||+++.+--+|.          ...+++.++.||..+
T Consensus       351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf  399 (546)
T COG4615         351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF  399 (546)
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence            478999999999999999887773          235566777777653

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=93.61  E-value=0.043  Score=48.48  Aligned_cols=22  Identities=41%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -++++|++||||||+++.+.-+
T Consensus         5 ~i~l~G~sGsGKSTl~~~la~~   26 (176)
T PRK09825          5 SYILMGVSGSGKSLIGSKIAAL   26 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4789999999999999987643

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=93.61  E-value=0.042  Score=50.33  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        13 ~~~i~G~nGsGKSTLl~~l~Gl~   35 (230)
T TIGR01184        13 FISLIGHSGCGKSTLLNLISGLA   35 (230)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999886443

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd04109 Rab28 Rab28 subfamily

Probab=93.61  E-value=0.043  Score=49.60  Aligned_cols=21  Identities=29%  Similarity=0.675  Sum_probs=18.9

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +|++++|.+++|||||++++.
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~   21 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFA   21 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHh
Confidence            489999999999999999763

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=93.61  E-value=0.044  Score=46.72  Aligned_cols=19  Identities=37%  Similarity=0.606  Sum_probs=17.2

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      |++++|.+++|||||+..+
T Consensus         1 ki~vvG~~~~GKtsli~~~   19 (165)
T cd04146           1 KIAVLGASGVGKSALVVRF   19 (165)
T ss_pred             CEEEECCCCCcHHHHHHHH
Confidence            6899999999999998664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=93.60  E-value=0.042  Score=52.88  Aligned_cols=22  Identities=41%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -+.|||++||||||+++-|.-+
T Consensus        30 ~vaLlGpSGaGKsTlLRiIAGL   51 (345)
T COG1118          30 LVALLGPSGAGKSTLLRIIAGL   51 (345)
T ss_pred             EEEEECCCCCcHHHHHHHHhCc
Confidence            5789999999999999998744

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=93.60  E-value=0.042  Score=50.24  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=20.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|.+--++
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~   49 (232)
T PRK10771         26 ERVAILGPSGAGKSTLLNLIAGFL   49 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999887554

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=93.59  E-value=0.042  Score=51.47  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        40 ~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         40 FVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999887543

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=93.59  E-value=0.042  Score=51.12  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+.-+.
T Consensus        27 ~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          27 VIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999986543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=93.59  E-value=0.15  Score=51.69  Aligned_cols=75  Identities=20%  Similarity=0.258  Sum_probs=48.8

Q ss_pred             cCeEEEEeccCCCcccCCceeEEEecCCccccc---------cccccccCCccEEEEEeeccCcccccccCCCccchHHH
Q 019426          203 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMET  273 (341)
Q Consensus       203 ~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR---------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eS  273 (341)
                      ..+.+..+      .+++..+.+||+.|++...         +.| .++.+++++|||+|.++...           .+.
T Consensus       251 ~d~~~~~i------~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~-~~~~~aD~il~VvD~s~~~s-----------~~~  312 (449)
T PRK05291        251 RDVIEEHI------NLDGIPLRLIDTAGIRETDDEVEKIGIERSR-EAIEEADLVLLVLDASEPLT-----------EED  312 (449)
T ss_pred             cccEEEEE------EECCeEEEEEeCCCCCCCccHHHHHHHHHHH-HHHHhCCEEEEEecCCCCCC-----------hhH
Confidence            34455556      5677889999999986421         122 36788999999999986321           112


Q ss_pred             HHHHHHHhcCccccCccccCCceeEEEEec-cCccC
Q 019426          274 KELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       274 l~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      ..++..      ..+       .|+++.+| +|+..
T Consensus       313 ~~~l~~------~~~-------~piiiV~NK~DL~~  335 (449)
T PRK05291        313 DEILEE------LKD-------KPVIVVLNKADLTG  335 (449)
T ss_pred             HHHHHh------cCC-------CCcEEEEEhhhccc
Confidence            233332      223       68888888 99974

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=93.59  E-value=0.043  Score=50.46  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+.-+.
T Consensus        31 ~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         31 IVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999987554

>cd04157 Arl6 Arl6 subfamily

Probab=93.58  E-value=0.046  Score=46.11  Aligned_cols=20  Identities=45%  Similarity=0.802  Sum_probs=17.8

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      +|+++|.+++|||||++++.
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~   20 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLK   20 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHc
Confidence            58999999999999998864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=93.57  E-value=0.042  Score=51.69  Aligned_cols=23  Identities=39%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.|--++
T Consensus        35 ~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         35 IAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999987554

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=93.57  E-value=0.043  Score=50.16  Aligned_cols=23  Identities=35%  Similarity=0.625  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+.-+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          29 KVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999987554

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=93.56  E-value=0.044  Score=50.30  Aligned_cols=23  Identities=39%  Similarity=0.660  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++-+--++
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        29 FVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68899999999999999987554

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=93.56  E-value=0.045  Score=47.82  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--++
T Consensus        30 ~~~i~G~nGsGKStLl~~l~G~~   52 (173)
T cd03246          30 SLAIIGPSGSGKSTLARLILGLL   52 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            68999999999999999887554

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=93.56  E-value=0.044  Score=49.45  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|-+--+.
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~   48 (213)
T TIGR01277        25 EIVAIMGPSGAGKSTLLNLIAGFI   48 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999887554

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=93.56  E-value=0.049  Score=45.99  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      |+|+|.+||||||+.+.+.-.+
T Consensus         2 i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999987443

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=93.55  E-value=0.046  Score=49.44  Aligned_cols=21  Identities=14%  Similarity=0.452  Sum_probs=18.4

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-++|.|++||||||+++++.
T Consensus        14 ~~ivi~GpsG~GK~tl~~~L~   34 (206)
T PRK14738         14 LLVVISGPSGVGKDAVLARMR   34 (206)
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            457889999999999999885

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.54  E-value=0.043  Score=51.56  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         29 VTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            68999999999999999886443

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=93.53  E-value=0.044  Score=50.40  Aligned_cols=23  Identities=39%  Similarity=0.706  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+.-++
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         30 TLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=93.53  E-value=0.089  Score=52.94  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=20.2

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+=|-|.|+.||||||+++.+..+.
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~~lL  236 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALDYLF  236 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4556788999999999999986443

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.53  E-value=0.044  Score=50.51  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|-+--+.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         31 IYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887543

>cd04176 Rap2 Rap2 subgroup

Probab=93.52  E-value=0.047  Score=46.29  Aligned_cols=20  Identities=40%  Similarity=0.644  Sum_probs=17.8

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +|++++|.+++|||||+..+
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~   21 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQF   21 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            68999999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.52  E-value=0.045  Score=50.26  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=39.3

Q ss_pred             ceEEeccCCCcchhHHHHHHh--hh-----------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL--LF-----------QTGFDEAELKSYISVIHANVYQTIKVLYDGSKELA  106 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~--~~-----------~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~  106 (341)
                      -+.|||++|+||||++|++.-  .+           .+.|.+.++...+.+..+|.--++..-+...-+++
T Consensus        29 v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mG   99 (259)
T COG4559          29 VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMG   99 (259)
T ss_pred             EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhc
Confidence            367999999999999999862  11           13477888888888887776554444333333333

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=93.51  E-value=0.048  Score=47.14  Aligned_cols=20  Identities=30%  Similarity=0.567  Sum_probs=17.9

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +|++++|.+|+|||||++++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~   20 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSY   20 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            58999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=93.50  E-value=0.046  Score=49.89  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--+.
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         35 FKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999886443

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=93.50  E-value=0.045  Score=50.19  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||++.+--+.
T Consensus        30 e~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          30 KTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccC
Confidence            368999999999999999987554

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=93.50  E-value=0.045  Score=49.95  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.|--+.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          30 TVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999886544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=93.49  E-value=0.047  Score=47.60  Aligned_cols=23  Identities=39%  Similarity=0.661  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|-+--++
T Consensus        30 ~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          30 KVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999987554

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=93.49  E-value=0.047  Score=47.38  Aligned_cols=20  Identities=20%  Similarity=0.461  Sum_probs=18.4

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      ||+++|.+++|||||++++.
T Consensus         2 ki~ivG~~~vGKTsli~~~~   21 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFC   21 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            89999999999999999864

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=93.49  E-value=0.046  Score=49.62  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--++
T Consensus        36 ~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        36 CVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.47  E-value=0.046  Score=50.62  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=19.0

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .+.|+|++||||||++|.+--
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         31 VVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999999853

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=93.46  E-value=0.046  Score=50.27  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||++.+--+.
T Consensus        48 e~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          48 EIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            368999999999999999887543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=93.45  E-value=0.047  Score=49.36  Aligned_cols=23  Identities=39%  Similarity=0.602  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+.-+.
T Consensus        32 ~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          32 KVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCc
Confidence            68999999999999999887554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=93.44  E-value=0.047  Score=50.58  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++||||||+++-+--+.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        30 EVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999887554

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=93.43  E-value=0.16  Score=54.48  Aligned_cols=40  Identities=20%  Similarity=0.253  Sum_probs=30.7

Q ss_pred             ccCCceeEEEecCCcccc--------ccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNE--------RRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~e--------R~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+.+..+.+||+||+...        +..+..++++++++|||+|.++
T Consensus       319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~  366 (712)
T PRK09518        319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQV  366 (712)
T ss_pred             EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            456778999999997632        2344556889999999999874

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=93.42  E-value=0.046  Score=50.61  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++-+--++
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         33 IVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999887554

>PRK14527 adenylate kinase; Provisional

Probab=93.42  E-value=0.049  Score=48.39  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .-++++|++||||||+++++.--|
T Consensus         7 ~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          7 KVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999886443

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=93.42  E-value=0.055  Score=48.01  Aligned_cols=21  Identities=33%  Similarity=0.664  Sum_probs=19.0

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      ++|.|+++|||||++|++.+.
T Consensus         2 ~~ltG~N~~GKst~l~~i~~~   22 (185)
T smart00534        2 VIITGPNMGGKSTYLRQVGLI   22 (185)
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            689999999999999999854

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=93.41  E-value=0.055  Score=49.33  Aligned_cols=23  Identities=35%  Similarity=0.618  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -+++|.|+.++||||++|++.++
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~~   52 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVALI   52 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHHH
Confidence            47899999999999999999743

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=93.41  E-value=0.15  Score=53.58  Aligned_cols=67  Identities=13%  Similarity=0.055  Sum_probs=45.6

Q ss_pred             ccCCceeEEEecCCccccccc------ccccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRK------WIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~k------W~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      .+++.++.+||..|+.+.+..      +..++  ++++.+++|+|.++.+             ..+.+..++...    +
T Consensus        37 ~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le-------------r~l~l~~ql~~~----~   99 (591)
T TIGR00437        37 GFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE-------------RNLYLTLQLLEL----G   99 (591)
T ss_pred             EECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch-------------hhHHHHHHHHhc----C
Confidence            456778999999999765432      44443  4789999999998632             123333344331    3


Q ss_pred             ccccCCceeEEEEec-cCcc
Q 019426          289 FFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~  307 (341)
                             .|+++.+| +|+.
T Consensus       100 -------~PiIIVlNK~Dl~  112 (591)
T TIGR00437       100 -------IPMILALNLVDEA  112 (591)
T ss_pred             -------CCEEEEEehhHHH
Confidence                   68899998 9986

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=93.39  E-value=0.048  Score=50.36  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        29 VTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68899999999999999987554

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.37  E-value=0.049  Score=48.84  Aligned_cols=23  Identities=17%  Similarity=0.346  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++-+--+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         29 LVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999886543

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=93.37  E-value=0.049  Score=49.96  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+.-++
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         33 IVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            68999999999999999987554

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=93.37  E-value=0.05  Score=49.54  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.6

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+||+++|.+|+|||||++++
T Consensus        12 ~~~Ki~vvG~~gvGKTsli~~~   33 (219)
T PLN03071         12 PSFKLVIVGDGGTGKTTFVKRH   33 (219)
T ss_pred             CceEEEEECcCCCCHHHHHHHH
Confidence            4579999999999999999874

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=93.36  E-value=0.051  Score=47.76  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+|+|+|..||||||+.+.+.-.
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999998643

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=93.35  E-value=0.048  Score=51.20  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         35 ITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=93.35  E-value=0.051  Score=48.83  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=19.0

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      ++.|+|++||||||+++.+.-
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            789999999999999998763

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.34  E-value=0.049  Score=51.05  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        49 ~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         49 VTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999988643

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=93.34  E-value=0.05  Score=48.89  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=20.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      .+.|+|++|||||||++.+.-++.
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          35 MVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             EEEEECCCCCCHHHHHHHhcccCC
Confidence            789999999999999998876543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=93.34  E-value=0.051  Score=48.56  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=19.3

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      +||.++|.+|+||||+++.+.
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~   22 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALR   22 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999864

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=93.32  E-value=0.05  Score=50.97  Aligned_cols=24  Identities=33%  Similarity=0.354  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|.|--++
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        38 ETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999887554

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=93.32  E-value=0.05  Score=49.31  Aligned_cols=23  Identities=39%  Similarity=0.639  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHH-hhh
Q 019426           49 KLLLLGAGESGKSTIFKQIK-LLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~-~~~   71 (341)
                      .+.|+|++||||||+++.+. .+|
T Consensus        30 ~~~i~G~NGsGKSTll~~i~~~l~   53 (213)
T cd03279          30 LFLICGPTGAGKSTILDAITYALY   53 (213)
T ss_pred             EEEEECCCCCCHHHHHHHheeeEe
Confidence            68899999999999999987 344

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=93.32  E-value=0.052  Score=50.87  Aligned_cols=25  Identities=36%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      -.+.|+|++|||||||+|-+--++.
T Consensus        27 e~~~IvG~nGsGKSTLlk~l~Gl~~   51 (255)
T cd03236          27 QVLGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            3799999999999999999876663

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=93.30  E-value=0.05  Score=50.71  Aligned_cols=22  Identities=41%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.|.-+
T Consensus        32 ~~~I~G~NGsGKSTLl~~i~Gl   53 (251)
T PRK09544         32 ILTLLGPNGAGKSTLVRVVLGL   53 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988744

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=93.30  E-value=0.05  Score=50.27  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         31 VTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998643

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=93.30  E-value=0.05  Score=50.38  Aligned_cols=23  Identities=43%  Similarity=0.592  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.|--++
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        28 KVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.29  E-value=0.051  Score=50.26  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+--++
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         31 ITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999987554

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=93.29  E-value=0.056  Score=48.25  Aligned_cols=21  Identities=38%  Similarity=0.727  Sum_probs=17.4

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-+||+|++|||||+|+-++.
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~   24 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLV   24 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHh
Confidence            368999999999999998875

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=93.27  E-value=0.057  Score=46.39  Aligned_cols=24  Identities=29%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|+|.|.+||||||+.+.+.-..
T Consensus         5 ~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          5 PNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            468999999999999999886543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=93.27  E-value=0.052  Score=49.88  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         29 VVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999987554

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=93.27  E-value=0.051  Score=50.70  Aligned_cols=24  Identities=25%  Similarity=0.548  Sum_probs=20.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|.+--++
T Consensus        40 e~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         40 QVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            368999999999999999987554

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=93.27  E-value=0.056  Score=51.77  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=20.7

Q ss_pred             cccceEEeccCCCcchhHHHHHHhhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ...=|.|.|++||||||+++.+.-+.
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll   86 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALL   86 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34557799999999999999876443

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK14737 gmk guanylate kinase; Provisional

Probab=93.26  E-value=0.053  Score=48.41  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=17.9

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      =++|.|++|||||||++.+.
T Consensus         6 ~ivl~GpsG~GK~tl~~~l~   25 (186)
T PRK14737          6 LFIISSVAGGGKSTIIQALL   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999874

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=93.26  E-value=0.053  Score=56.44  Aligned_cols=25  Identities=32%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      -|++|+|++||||||++|-+--++.
T Consensus       370 ~~~aIvG~sGsGKSTLl~ll~gl~~  394 (582)
T PRK11176        370 KTVALVGRSGSGKSTIANLLTRFYD  394 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccC
Confidence            4799999999999999999987774

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.26  E-value=0.051  Score=50.31  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        32 ~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         32 VFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999987554

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.25  E-value=0.052  Score=50.58  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--+.
T Consensus        40 ~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         40 VTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999886543

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.25  E-value=0.051  Score=51.58  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        39 ~~~l~G~nGsGKSTLl~~l~Gl~   61 (289)
T PRK13645         39 VTCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987543

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=93.24  E-value=0.057  Score=47.80  Aligned_cols=21  Identities=29%  Similarity=0.370  Sum_probs=18.3

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      |++.|++||||||+++++.-.
T Consensus         2 i~i~G~sgsGKttla~~l~~~   22 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQ   22 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999987644

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=93.23  E-value=0.055  Score=48.84  Aligned_cols=22  Identities=36%  Similarity=0.401  Sum_probs=18.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      =+-|.|++|+|||||+|.+-..
T Consensus        30 f~fl~GpSGAGKSTllkLi~~~   51 (223)
T COG2884          30 FVFLTGPSGAGKSTLLKLIYGE   51 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3678999999999999977533

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=93.22  E-value=0.056  Score=47.39  Aligned_cols=23  Identities=17%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ....+++++|.+++|||||++.+
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l   44 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINAL   44 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHH
Confidence            35579999999999999999864

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=93.22  E-value=0.052  Score=50.81  Aligned_cols=24  Identities=33%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|.+--++
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         38 KVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCC
Confidence            378999999999999999987554

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=93.21  E-value=0.052  Score=51.97  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        32 ~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        32 CFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999987443

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.21  E-value=0.053  Score=50.13  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|-+--++
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         32 LTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            68999999999999999987554

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.20  E-value=0.057  Score=46.24  Aligned_cols=24  Identities=38%  Similarity=0.580  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.++|+|++|||||||++.+--++
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~   49 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLL   49 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999987554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=93.18  E-value=0.054  Score=50.09  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++|||||||++.+--+
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         33 ITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998643

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=93.17  E-value=0.053  Score=51.88  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        21 ~~~l~G~NGaGKSTLl~~l~Gl~   43 (302)
T TIGR01188        21 VFGFLGPNGAGKTTTIRMLTTLL   43 (302)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999987443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=93.17  E-value=0.055  Score=48.93  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||++.+--++
T Consensus        28 e~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          28 QLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            378999999999999999887443

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=93.16  E-value=0.056  Score=48.23  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||+|-+--+.
T Consensus        36 e~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999887554

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=93.16  E-value=0.056  Score=48.43  Aligned_cols=23  Identities=39%  Similarity=0.391  Sum_probs=20.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -.+.|+|++|||||||+|.+--+
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          27 EVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999988654

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd04111 Rab39 Rab39 subfamily

Probab=93.16  E-value=0.057  Score=48.84  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=19.7

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+||+++|.+++|||||++++-
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~   23 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFT   23 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3799999999999999999864

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=93.15  E-value=0.054  Score=52.14  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=20.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--+.
T Consensus        35 ~v~iiG~nGsGKSTLl~~L~Gl~   57 (305)
T PRK13651         35 FIAIIGQTGSGKTTFIEHLNALL   57 (305)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            79999999999999999987554

>PRK14528 adenylate kinase; Provisional

Probab=93.15  E-value=0.067  Score=47.54  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +++++|++||||||+.+.+.-.|
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999986444

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=93.14  E-value=0.055  Score=49.84  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -.+.|+|++||||||+++-+--+
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         28 EVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            37899999999999999988755

>PTZ00301 uridine kinase; Provisional

Probab=93.14  E-value=0.056  Score=49.34  Aligned_cols=20  Identities=35%  Similarity=0.443  Sum_probs=16.6

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      .=|.|-|++||||||+++.+
T Consensus         4 ~iIgIaG~SgSGKTTla~~l   23 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNI   23 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHH
Confidence            34677889999999999866

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.14  E-value=0.059  Score=55.36  Aligned_cols=25  Identities=36%  Similarity=0.662  Sum_probs=22.2

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      -|+.++|++||||||++|.+-..|.
T Consensus       379 ekVaIvG~nGsGKSTilr~LlrF~d  403 (591)
T KOG0057|consen  379 EKVAIVGSNGSGKSTILRLLLRFFD  403 (591)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3899999999999999999877763

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=93.14  E-value=0.056  Score=49.29  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=20.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|-+--++
T Consensus         8 ~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         8 LLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999987554

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=93.13  E-value=0.056  Score=49.11  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||++-+--+.
T Consensus        41 e~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          41 EVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCc
Confidence            378999999999999999887554

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.13  E-value=0.056  Score=50.15  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        35 ~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         35 ITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            78999999999999999987554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=93.12  E-value=0.056  Score=50.84  Aligned_cols=23  Identities=35%  Similarity=0.605  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        52 ~~~l~G~nGsGKSTLl~~L~Gl~   74 (269)
T cd03294          52 IFVIMGLSGSGKSTLLRCINRLI   74 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999887554

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13695 putative NTPase; Provisional

Probab=93.12  E-value=0.059  Score=47.06  Aligned_cols=20  Identities=30%  Similarity=0.429  Sum_probs=17.9

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      .|++|.|++|+||||+++++
T Consensus         1 ~~i~ltG~~G~GKTTll~~i   20 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKI   20 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999974

>cd01875 RhoG RhoG subfamily

Probab=93.11  E-value=0.06  Score=47.73  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=19.6

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+|++++|.+++|||+|+.++.
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~   24 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYT   24 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            3799999999999999998764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.11  E-value=0.056  Score=49.95  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--+.
T Consensus        31 ~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         31 ITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999999887543

>PF13173 AAA_14: AAA domain

Probab=93.10  E-value=0.062  Score=44.59  Aligned_cols=20  Identities=35%  Similarity=0.620  Sum_probs=18.0

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -++|.|+-++||||+++|+-
T Consensus         4 ~~~l~G~R~vGKTtll~~~~   23 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLA   23 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            36899999999999999985

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.10  E-value=0.056  Score=51.00  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        35 ~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         35 YTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999886543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=93.09  E-value=0.058  Score=48.98  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+--++
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        28 VYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887544

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=93.07  E-value=0.057  Score=50.19  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus        31 ~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         31 VLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.07  E-value=0.057  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++|||||||+|.+--+
T Consensus        34 ~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         34 VTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999998643

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=93.06  E-value=0.058  Score=49.25  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|-+--++
T Consensus        50 ~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          50 RIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887544

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=93.06  E-value=0.06  Score=45.08  Aligned_cols=19  Identities=37%  Similarity=0.616  Sum_probs=17.4

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      ++|.|++|+||||+++++-
T Consensus         2 ~~i~G~~G~GKT~l~~~i~   20 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLA   20 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHH
Confidence            6899999999999999884

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.06  E-value=0.058  Score=49.99  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         32 VTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            68999999999999999987664

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=93.06  E-value=0.057  Score=51.23  Aligned_cols=23  Identities=30%  Similarity=0.302  Sum_probs=19.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -|++.|.+||||||+.+++.-.+
T Consensus         4 liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          4 IILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHC
Confidence            36778999999999999986544

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.05  E-value=0.058  Score=50.28  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.|.-+.
T Consensus        40 ~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         40 VTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999987543

>cd01131 PilT Pilus retraction ATPase PilT

Probab=93.05  E-value=0.059  Score=48.39  Aligned_cols=18  Identities=39%  Similarity=0.580  Sum_probs=16.4

Q ss_pred             eEEeccCCCcchhHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~   67 (341)
                      +++.|+.||||||+++.+
T Consensus         4 ilI~GptGSGKTTll~~l   21 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAM   21 (198)
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999864

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=93.05  E-value=0.059  Score=48.75  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++|||||||++.+.-++
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          32 KVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999887544

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.04  E-value=0.058  Score=50.64  Aligned_cols=23  Identities=35%  Similarity=0.263  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+--++
T Consensus        37 ~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         37 WTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999987554

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.04  E-value=0.058  Score=51.24  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=20.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.|--+.
T Consensus        35 ~~~i~G~nGsGKSTLl~~L~Gl~   57 (286)
T PRK13646         35 YYAIVGQTGSGKSTLIQNINALL   57 (286)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999997554

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=93.03  E-value=0.058  Score=49.85  Aligned_cols=23  Identities=35%  Similarity=0.354  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -.+.|+|++||||||+++-|--+
T Consensus        34 e~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         34 EIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCC
Confidence            37899999999999999987643

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=93.02  E-value=0.059  Score=50.58  Aligned_cols=23  Identities=22%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||++.+--+.
T Consensus        47 ~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         47 VTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999987554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	341
2xtz_A	354	Crystal Structure Of The G Alpha Protein Atgpa1 Fro		1e-125
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		2e-52
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		2e-52
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		2e-51
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-51
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		2e-51
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		2e-51
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		3e-51
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		4e-51
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		4e-51
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		4e-51
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		4e-51
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		4e-51
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		4e-51
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		4e-51
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		4e-51
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		5e-51
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		6e-51
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		8e-51
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		9e-51
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		9e-51
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		1e-50
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		2e-50
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		3e-50
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		3e-50
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		3e-50
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		3e-50
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		5e-50
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		2e-49
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		3e-49
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		8e-49
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		7e-46
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		6e-45
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		6e-45
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		7e-45
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		1e-43
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		3e-43
1zca_A	359	Crystal Structure Of G Alpha 12 In Complex With Gdp		8e-40
4fid_A	340	Crystal Structure Of A Heterotrimeric G-Protein Sub		7e-38
3sn6_A	380	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-37
1cul_C	380	Complex Of Gs-Alpha With The Catalytic Domains Of M		3e-37
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		4e-37
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		5e-36
1cjk_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		5e-36
1cs4_C	394	Complex Of Gs-Alpha With The Catalytic Domains Of M		9e-36
1azs_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		9e-36
3cx6_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		4e-35

>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thaliana Length = 354

Iteration: 1
 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/242 (86%), Positives = 227/242 (93%)
Query: 46  HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKEL 105
           HI+KLLLLGAGESGKSTIFKQIKLLFQTGFDE ELKSY+ VIHANVYQTIK+L+DG+KE 
Sbjct: 8   HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEF 67
Query: 106 AQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGN 165
           AQNETDS K+++SSE+  IGEKLSEIGGRLDYPRLTK++AE IETLW DPAIQET A GN
Sbjct: 68  AQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETXARGN 127
Query: 166 ELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRL 225
           ELQ+PD   Y MENL+RLSD NY+PTK+DVLYARVRTTGVVEIQFSPVGE+KKSGEVYRL
Sbjct: 128 ELQVPDXTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRL 187
Query: 226 FDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 285
           FDVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC
Sbjct: 188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC 247
Query: 286 FE 287
           FE
Sbjct: 248 FE 249

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score =  202 bits (515), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/267 (39%), Positives = 158/267 (59%), Gaps = 13/267 (4%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 65
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  DS +        +   +L  + G  +   
Sbjct: 66  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V+TTG+VE  F+    H      +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
            L EDE+ NRM E+ +LFD +    CF
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKCF 259

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/276 (39%), Positives = 165/276 (59%), Gaps = 17/276 (6%)
Query: 21  AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL 80
           A  S E   + E+E++++++ + +    KLLLLGAGESGKSTI KQ+K++ Q  +   E 
Sbjct: 9   AGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQDPYSLEEC 68
Query: 81  KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
             +I++I+ N  Q+I  +      L     DS +       ++   KL  +   ++   +
Sbjct: 69  LEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSAR-------QDDARKLMHMADTIEEGTM 121
Query: 141 TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARV 200
            KE+++ I+ LW D  IQ  +   +E QL D A Y++ +L+RL    YVPT+ DVL +RV
Sbjct: 122 PKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRV 181
Query: 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 260
           +TTG++E QFS    +      +R+FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  
Sbjct: 182 KTTGIIETQFSFKDLN------FRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 235
Query: 261 LFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
           L EDE+ NRM E+  LF+ +    C   +F  TS +
Sbjct: 236 LAEDEEMNRMHESMHLFNSI----CNNKWFTDTSII 267

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 161/276 (58%), Gaps = 17/276 (6%)
Query: 21  AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL 80
           A  S E   + E+E++++++ + +    KLLLLGAGESGKSTI KQ K++ Q G+   E 
Sbjct: 3   AGASAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQXKIIHQDGYSLEEC 62
Query: 81  KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
             +I++I+ N  Q+I  +      L     DS +       ++   KL      ++    
Sbjct: 63  LEFIAIIYGNTLQSILAIVRAXTTLNIQYGDSAR-------QDDARKLXHXADTIEEGTX 115
Query: 141 TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARV 200
            KE ++ I+ LW D  IQ  +   +E QL D A Y++ +L+RL    YVPT+ DVL +RV
Sbjct: 116 PKEXSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRV 175
Query: 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 260
           +TTG++E QFS    +      +R FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  
Sbjct: 176 KTTGIIETQFSFKDLN------FRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 229
Query: 261 LFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
           L EDE+ NR  E+ +LFD +    C   +F  TS +
Sbjct: 230 LAEDEEXNRXHESXKLFDSI----CNNKWFTDTSII 261

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 13/267 (4%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 65  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V+TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
            L EDE+ NRM E+ +LFD +     F
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWF 258

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/277 (38%), Positives = 163/277 (58%), Gaps = 17/277 (6%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 8   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 67
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 68  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 120
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 121 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 180
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V+TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 181 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 234
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
            L EDE+ NRM E+ +LFD +    C   +F  TS +
Sbjct: 235 VLAEDEEMNRMHESMKLFDSI----CNNKWFTDTSII 267

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/267 (39%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K+  + G+ E E
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKICHEAGYSEEE 65
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 66  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V+TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
            L EDE+ NRM E+ +LFD +     F
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWF 259

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score =  198 bits (504), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 8   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 67
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E Q
Sbjct: 68  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 120
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 121 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 174
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 175 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 232

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score =  198 bits (504), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 5   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E Q
Sbjct: 65  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 117
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 118 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 171
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 172 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 229

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/249 (42%), Positives = 151/249 (60%), Gaps = 14/249 (5%)
Query: 38  EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
           E   KA + + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  
Sbjct: 1   EDGEKAAREV-KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIA 59
Query: 98  LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
           +      L  +  DS +        +   +L  + G  +   +T ELA  I+ LW D  +
Sbjct: 60  IIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
           Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H 
Sbjct: 113 QACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
                +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCF 286
           D +     F
Sbjct: 227 DSICNNKWF 235

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 6   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E Q
Sbjct: 66  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 230

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 105/267 (39%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 65
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  DS +        +   +L  + G  +   
Sbjct: 66  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGF 118
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 119 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 178
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V+TTG+VE  F+    H      +++FDV GQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 179 VKTTGIVETHFTFKDLH------FKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDL 232
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
            L EDE+ NRM E+ +LFD +     F
Sbjct: 233 VLAEDEEMNRMHESMKLFDSICNNKWF 259

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 104/245 (42%), Positives = 150/245 (61%), Gaps = 14/245 (5%)
Query: 42  KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101
           KA + + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +   
Sbjct: 4   KAAREV-KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRA 62
Query: 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETY 161
              L  +  DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +
Sbjct: 63  MGRLKIDFGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACF 115
Query: 162 AHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGE 221
               E QL D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H     
Sbjct: 116 NRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH----- 170
Query: 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
            +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD + 
Sbjct: 171 -FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 229
Query: 282 KQPCF 286
               F
Sbjct: 230 NNKWF 234

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 4   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E Q
Sbjct: 64  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 228

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score =  198 bits (503), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 102/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 3   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 62
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E Q
Sbjct: 63  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 115
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 116 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 169
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 170 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 227

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score =  197 bits (502), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/277 (38%), Positives = 162/277 (58%), Gaps = 17/277 (6%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 65  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 178 VPTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
            L EDE+ NRM E+ +LFD +    C   +F  TS +
Sbjct: 232 VLAEDEEMNRMHESMKLFDSI----CNNKWFTDTSII 264

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score =  197 bits (502), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 105/248 (42%), Positives = 152/248 (61%), Gaps = 17/248 (6%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ Q G+   E   +I++I+ N  Q+I  +      L   
Sbjct: 6   KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +       ++   KL  +   ++   + KE+++ I+ LW D  IQ  +   +E Q
Sbjct: 66  YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L+RL    YVPT+ DVL +RV+TTG++E QFS    +      +R+FDV
Sbjct: 119 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +    C   
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI----CNNK 228
Query: 289 FFCATSAL 296
           +F  TS +
Sbjct: 229 WFTDTSII 236

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score =  197 bits (501), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 110/278 (39%), Positives = 168/278 (60%), Gaps = 19/278 (6%)
Query: 20  NAADSEENAQTAEIERRIEQET-KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA 78
           +A D     ++  I+R + ++  KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E 
Sbjct: 5   SAEDKAAVERSKMIDRNLREDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSED 63
Query: 79  ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP 138
           E K Y  V+++N  Q+I  +      L  +  ++ +        +   +L  + G  +  
Sbjct: 64  ECKQYKVVVYSNTIQSIIAIIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEG 116
Query: 139 RLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYA 198
            +T ELA  I+ LW D  +Q  ++   E QL D A+Y++ +L R+S +NY+PT+ DVL  
Sbjct: 117 VMTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRT 176
Query: 199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYD 258
           RV+TTG+VE  F+    +      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD
Sbjct: 177 RVKTTGIVETHFTFKDLY------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230
Query: 259 QTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL 296
             L EDE+ NRM E+ +LFD +    C   +F  TS +
Sbjct: 231 LVLAEDEEMNRMHESMKLFDSI----CNNKWFTETSII 264

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score =  197 bits (500), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 104/267 (38%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 65  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V+TTG+VE  F+    H      +++FDVG QR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
            L EDE+ NRM E+ +LFD +     F
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWF 258

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score =  197 bits (500), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 146/238 (61%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 4   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             D+ +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E Q
Sbjct: 64  FGDAAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 117 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 228

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/267 (38%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E
Sbjct: 5   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 65  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V+TTG+VE  F+    H      +++FDVGG R+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
            L EDE+ NRM E+ +LFD +     F
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWF 258

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/267 (38%), Positives = 157/267 (58%), Gaps = 13/267 (4%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +      KLLLLGA ESGKSTI KQ+K++ + G+ E E
Sbjct: 5   SAEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAVESGKSTIVKQMKIIHEAGYSEEE 64
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPR 139
            K Y +V+++N  Q+I  +      L  +  D+ +        +   +L  + G  +   
Sbjct: 65  CKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAAR-------ADDARQLFVLAGAAEEGF 117
Query: 140 LTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
           +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  R
Sbjct: 118 MTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTR 177
Query: 200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQ 259
           V+TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD 
Sbjct: 178 VKTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL 231
Query: 260 TLFEDEQKNRMMETKELFDWVLKQPCF 286
            L EDE+ NRM E+ +LFD +     F
Sbjct: 232 VLAEDEEMNRMHESMKLFDSICNNKWF 258

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 107/259 (41%), Positives = 158/259 (61%), Gaps = 18/259 (6%)
Query: 38  EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
           E   KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y  V+++N  Q+I  
Sbjct: 1   EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98  LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
           +      L  +  ++ +        +   +L  + G  +   +T ELA  I+ LW D  +
Sbjct: 60  IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
           Q  ++   E QL D A+Y++ +L R+S +NY+PT+ DVL  RV+TTG+VE  F+    + 
Sbjct: 113 QACFSRSREYQLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
                +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCFEVFFCATSAL 296
           D +    C   +F  TS +
Sbjct: 227 DSI----CNNKWFTETSII 241

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 9   KLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E  
Sbjct: 69  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYL 121
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 233

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 6   KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 65
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E Q
Sbjct: 66  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 118
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 119 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 172
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 173 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 230

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score =  195 bits (495), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 145/238 (60%), Gaps = 13/238 (5%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGA ESGKSTI KQ+K++ + G+ E E K Y +V+++N  Q+I  +      L  +
Sbjct: 9   KLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKID 68
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +        +   +L  + G  +   +T ELA  I+ LW D  +Q  +    E Q
Sbjct: 69  FGDSAR-------ADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQ 121
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L R++  NY+PT+ DVL  RV+TTG+VE  F+    H      +++FDV
Sbjct: 122 LNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLH------FKMFDV 175
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +     F
Sbjct: 176 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 233

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score =  194 bits (493), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 103/248 (41%), Positives = 153/248 (61%), Gaps = 17/248 (6%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y  V+++N  Q+I  +      L  +
Sbjct: 4   KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIAIIRAMGRLKID 63
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             ++ +        +   +L  + G  +   +T ELA  I+ LW D  +Q  ++   E Q
Sbjct: 64  FGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGVQACFSRSREYQ 116
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A+Y++ +L R+S +NY+PT+ DVL  RV+TTG+VE  F+    +      +++FDV
Sbjct: 117 LNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY------FKMFDV 170
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288
           GGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LFD +    C   
Sbjct: 171 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI----CNNK 226
Query: 289 FFCATSAL 296
           +F  TS +
Sbjct: 227 WFTETSII 234

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 106/259 (40%), Positives = 157/259 (60%), Gaps = 18/259 (6%)
Query: 38  EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
           E   KA K + KLLLLGAGESGKSTI KQ+K++ + G+ E E K Y  V+++N  Q+I  
Sbjct: 1   EDGEKAAKEV-KLLLLGAGESGKSTIVKQMKIIHEDGYSEDECKQYKVVVYSNTIQSIIA 59
Query: 98  LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAI 157
           +      L  +  ++ +        +   +L  + G  +   +T ELA  I+ LW D  +
Sbjct: 60  IIRAMGRLKIDFGEAAR-------ADDARQLFVLAGSAEEGVMTPELAGVIKRLWRDGGV 112
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
           Q  ++   E  L D A+Y++ +L R+S +NY+PT+ DVL  RV+TTG+VE  F+    + 
Sbjct: 113 QACFSRSREYLLNDSASYYLNDLDRISQSNYIPTQQDVLRTRVKTTGIVETHFTFKDLY- 171
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
                +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L EDE+ NRM E+ +LF
Sbjct: 172 -----FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 226
Query: 278 DWVLKQPCFEVFFCATSAL 296
           D +    C   +F  TS +
Sbjct: 227 DSI----CNNKWFTETSII 241

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 102/248 (41%), Positives = 149/248 (60%), Gaps = 17/248 (6%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ Q G+   E   +I++I+ N  Q+I  +      L   
Sbjct: 5   KLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQ 64
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQ 168
             DS +       ++   KL  +   ++   + KE+++ I+ LW D  IQ  +   +E Q
Sbjct: 65  YGDSAR-------QDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQ 117
Query: 169 LPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDV 228
           L D A Y++ +L+RL    YVPT+ DVL +RV+TTG++E QFS    +      +R+FDV
Sbjct: 118 LNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLN------FRMFDV 171
Query: 229 GGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV 288
           GGQR+ER+KWIH FEGV+ +IF AA+S YD  L ED++ NRM E+  LF+ +    C   
Sbjct: 172 GGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSI----CNHR 227
Query: 289 FFCATSAL 296
           +F  TS +
Sbjct: 228 YFATTSIV 235

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score =  190 bits (483), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 104/249 (41%), Positives = 144/249 (57%), Gaps = 18/249 (7%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLGAGESGKSTI KQ+K++ + GF   ++K Y  V+++N  Q++  +      L   
Sbjct: 14  KLLLLGAGESGKSTIVKQMKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGVE 73
Query: 109 ETDSMKFVVSSENKEIGEKLSEIGGRL-DYPRLTKELAEDIETLWADPAIQETYAHGNEL 167
             D        E K   + + ++  R+ D    + EL   +  LW D  IQE +    E 
Sbjct: 74  YGDK-------ERKTDSKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREY 126
Query: 168 QLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFD 227
           QL D A Y++++L R+   +Y PT+ D+L  RV+TTG+VE  F+    H      +RLFD
Sbjct: 127 QLNDSAKYYLDSLDRIGAGDYQPTEQDILRTRVKTTGIVETHFTFKNLH------FRLFD 180
Query: 228 VGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           VGGQR+ER+KWIH FE V+A+IFC A+S YDQ L EDE  NRM E+  LFD +    C  
Sbjct: 181 VGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSI----CNN 236
Query: 288 VFFCATSAL 296
            FF  TS +
Sbjct: 237 KFFIDTSII 245

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score =  181 bits (458), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 22/260 (8%)
Query: 32  EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
           EIER++ ++ +  +   KLLLLG GESGKST  KQ++++  +G+ + + + +  +++ N+
Sbjct: 18  EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 77
Query: 92  YQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIGGRLDYPRLT---KELAED 147
           +  ++ +            D++K     E NK   + + E+    D  +++       + 
Sbjct: 78  FTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREV----DVEKVSAFENPYVDA 125
Query: 148 IETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVE 207
           I++LW DP IQE Y    E QL D   Y++ +L R++D +Y+PT+ DVL  RV TTG++E
Sbjct: 126 IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIE 185
Query: 208 IQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQK 267
             F           ++R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E + +
Sbjct: 186 YPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNE 239
Query: 268 NRMMETKELFDWVLKQPCFE 287
           NRM E+K LF  ++  P F+
Sbjct: 240 NRMEESKALFRTIITYPWFQ 259

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 156/272 (57%), Gaps = 22/272 (8%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +  +   KLLLLG GESGKST  KQ++++  +G+ + +
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 65
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIGGRLDYP 138
            + +  +++ N++  ++ +            D++K     E NK   + + E+    D  
Sbjct: 66  KRGFTKLVYQNIFTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREV----DVE 113
Query: 139 RLT---KELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDV 195
           +++       + I++LW DP IQE Y    E QL D   Y++ +L R++D +Y+PT+ DV
Sbjct: 114 KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDV 173
Query: 196 LYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 255
           L  RV TTG++E  F           ++R+ DVGGQR+ERRKWIH FE V++++F  A+S
Sbjct: 174 LRVRVPTTGIIEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 227
Query: 256 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           EYDQ L E + +NRM E+K LF  ++  P F+
Sbjct: 228 EYDQVLVESDNENRMEESKALFRTIITYPWFQ 259

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score =  177 bits (450), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 156/272 (57%), Gaps = 22/272 (8%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +  +   KLLLLG GESGKST  KQ++++  +G+ + +
Sbjct: 8   SAEDKAAVERSKMIDRNLREDGERSRRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDED 67
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIGGRLDYP 138
            + +  +++ N++  ++ +            D++K     E NK   + + E+    D  
Sbjct: 68  KRGFTKLVYQNIFTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREV----DVE 115
Query: 139 RLT---KELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDV 195
           +++       + I++LW DP IQE Y    E QL D   Y++ +L R++D +Y+PT+ DV
Sbjct: 116 KVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDV 175
Query: 196 LYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIS 255
           L  RV TTG++E  F           ++R+ DVGGQR+ERRKWIH FE V++++F  A+S
Sbjct: 176 LRVRVPTTGIIEYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 229
Query: 256 EYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           EYDQ L E + +NRM E+K LF  ++  P F+
Sbjct: 230 EYDQVLVESDNENRMEESKALFRTIITYPWFQ 261

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score =  177 bits (449), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 149/261 (57%), Gaps = 24/261 (9%)
Query: 32  EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANV 91
           EIER++ ++ +  +   KLLLLG GESGKST  KQ++++  +G+ + + + +  +++ N+
Sbjct: 12  EIERQLRRDKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNI 71
Query: 92  YQTIKVLYDGSKELAQNETDSMKFVVSSE-NKEIGEKLSEIG----GRLDYPRLTKELAE 146
           +  ++ +            D++K     E NK   + + E+        D P        
Sbjct: 72  FTAMQAMIRA--------MDTLKIPYKYEHNKAHAQLVREVDVEKVSAFDVPDYAA---- 119
Query: 147 DIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVV 206
            I++LW DP IQE Y    E QL D   Y++ +L R++D +Y+PT+ DVL   V TTG++
Sbjct: 120 -IKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVCVPTTGII 178
Query: 207 EIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ 266
           E  F           ++R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E + 
Sbjct: 179 EYPFD------LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN 232
Query: 267 KNRMMETKELFDWVLKQPCFE 287
           +NRM E+K LF  ++  P F+
Sbjct: 233 ENRMEESKALFRTIITYPWFQ 253

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/243 (36%), Positives = 143/243 (58%), Gaps = 22/243 (9%)
Query: 49  KLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQN 108
           KLLLLG GESGKST  KQ++++  +G+ + + + +  +++ N++  ++ +          
Sbjct: 9   KLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRA------- 61
Query: 109 ETDSMKFVVSSE-NKEIGEKLSEIGGRLDYPRLT---KELAEDIETLWADPAIQETYAHG 164
             D++K     E NK   + + E+    D  +++       + I++LW DP IQE Y   
Sbjct: 62  -MDTLKIPYKYEHNKAHAQLVREV----DVEKVSAFENPYVDAIKSLWNDPGIQECYDRR 116
Query: 165 NELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYR 224
            E QL D   Y++ +L R++D +Y+PT+ DVL  RV TTG++E  F           ++R
Sbjct: 117 REYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPFD------LQSVIFR 170
Query: 225 LFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 284
           + DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E + +NRM E+K LF  ++  P
Sbjct: 171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230
Query: 285 CFE 287
            F+
Sbjct: 231 WFQ 233

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/268 (37%), Positives = 148/268 (55%), Gaps = 29/268 (10%)
Query: 38  EQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKV 97
           E   KA + + KLLLLGAGESGKST  KQ++++    FD+   + +   I++NV + ++V
Sbjct: 4   EDGEKAAREV-KLLLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRV 62
Query: 98  LYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAED---------I 148
           L D  ++L     D+       +N+  G+KL     R   P   + + E          I
Sbjct: 63  LVDAREKLHIPWGDN-------KNQLHGDKLMAFDTRA--PMAAQGMVETRVFLQYLPAI 113
Query: 149 ETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEI 208
             LW D  IQ  Y    E QL +   YF++NL +L   +Y+P++ D+L AR  T G+ E 
Sbjct: 114 RALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHET 173
Query: 209 QFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKN 268
            F+    H      +++FDVGGQR+ER+KW   FEGV+A+IFC A+S+YDQ L ED Q N
Sbjct: 174 HFTFKDLH------FKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTN 227
Query: 269 RMMETKELFDWVLKQPCFEVFFCATSAL 296
           RM E+ +LFD +    C   +F  TS +
Sbjct: 228 RMHESMKLFDSI----CNNKWFTDTSII 251

>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+ And Alf4- Length = 359

Iteration: 1
 Score =  160 bits (406), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 94/275 (34%), Positives = 154/275 (56%), Gaps = 24/275 (8%)
Query: 20  NAADSEENAQTAEIERRIEQ--ETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDE 77
           +A D     ++  I+R + +  E +A + + K+LLLGAGESGKST  KQ++++    FD+
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGERRAVRRLVKILLLGAGESGKSTFLKQMRIIHGREFDQ 65
Query: 78  AELKSYISVIHANVYQTIKVLYDGSKEL------AQNETDSMKFVVSSENKEIGEKLSEI 131
             L  +   I  N+ +  +VL D   +L      ++NE   M F+++ ENK  G  +   
Sbjct: 66  KALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHSENEKHGM-FLMAFENKA-GLPVEPA 123
Query: 132 GGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPT 191
             +L  P L+         LW D  I+E ++  +E QL +   YF++NL R+   NY P+
Sbjct: 124 TFQLYVPALS--------ALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPS 175
Query: 192 KDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFC 251
           K D+L AR  T G+VE  F      KK    +++ DVGGQR++R+KW   F+G+++++F 
Sbjct: 176 KQDILLARKATKGIVEHDFVI----KKIP--FKMVDVGGQRSQRQKWFQCFDGITSILFM 229
Query: 252 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
            + SEYDQ L ED + NR++E+  +F+ ++    F
Sbjct: 230 VSSSEYDQVLMEDRRTNRLVESMNIFETIVNNKLF 264

>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340

Iteration: 1
 Score =  154 bits (389), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 128/228 (56%), Gaps = 18/228 (7%)
Query: 50  LLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNE 109
           + LLG+GESGKSTI KQ+K+LF  GF E E  ++ S I +NV    + L + S  L    
Sbjct: 8   VXLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCXRTLIEQSAILNH-- 65
Query: 110 TDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQL 169
               K+   S+     E  +E    L +   + EL  D+E LWAD  IQ TY    + QL
Sbjct: 66  --PXKYQPKSK-----EFTTEDPVTLPF---SPELVGDVEALWADEGIQATYEESAKFQL 115
Query: 170 PDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVG 229
           PDCA Y  EN++R++  +YVPT++D+++ R +TTG+ E  F            + L DVG
Sbjct: 116 PDCAKYLFENVKRIAXEDYVPTEEDLIHNRTKTTGIHEYDFV------VKDIPFHLIDVG 169
Query: 230 GQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
           GQR+ER+ W+  F  V   IF  +++EYD  L+ED   +R+ E+  +F
Sbjct: 170 GQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVF 217

>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380

Iteration: 1
 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 142/271 (52%), Gaps = 20/271 (7%)
Query: 13  CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
           C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI KQ+++
Sbjct: 3   CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70  LFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           L   GF+ ++E  + +  I  N+ + I+ +      L           V   N E   ++
Sbjct: 63  LHVNGFNGDSEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPENQFRV 114
Query: 129 SEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDA 186
             I   ++ P      E  E  + LW D  ++  Y   NE QL DCA YF++ +  +   
Sbjct: 115 DYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQD 174
Query: 187 NYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS 246
           +YVP+  D+L  RV T+G+ E +F      +     + +FDVGGQR+ERRKWI  F  V+
Sbjct: 175 DYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVT 228
Query: 247 AVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
           A+IF  A S Y+  + ED Q NR+ E   LF
Sbjct: 229 AIIFVVASSSYNMVIREDNQTNRLQEALNLF 259

>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380

Iteration: 1
 Score =  152 bits (384), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 141/271 (52%), Gaps = 20/271 (7%)
Query: 13  CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
           C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI KQ+++
Sbjct: 3   CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70  LFQTGFD-EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           L   GF+ + E  + +  I  N+ + I+ +      L           V   N E   ++
Sbjct: 63  LHVNGFNGDGEKATKVQDIKNNLKEAIETIVAAMSNLVP--------PVELANPENQFRV 114
Query: 129 SEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDA 186
             I   ++ P      E  E  + LW D  ++  Y   NE QL DCA YF++ +  +   
Sbjct: 115 DYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQD 174
Query: 187 NYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVS 246
           +YVP+  D+L  RV T+G+ E +F      +     + +FDVGGQR+ERRKWI  F  V+
Sbjct: 175 DYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVT 228
Query: 247 AVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
           A+IF  A S Y+  + ED Q NR+ E   LF
Sbjct: 229 AIIFVVASSSYNMVIREDNQTNRLQEALNLF 259

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score =  151 bits (382), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/274 (31%), Positives = 145/274 (52%), Gaps = 20/274 (7%)
Query: 20  NAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAE 79
           +A D     ++  I+R + ++ +    + K+LLLGAGESGKST  KQ++++    FD+  
Sbjct: 6   SAEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRA 65
Query: 80  LKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP- 138
            + +   I++NV + ++VL D  ++L     D+       +N+  G+KL     R     
Sbjct: 66  REEFRPTIYSNVIKGMRVLVDAREKLHIPWGDN-------KNQLHGDKLMAFDTRAPMAA 118
Query: 139 ------RLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTK 192
                 R+  +    I  LW D  IQ  Y    E QL +   YF++NL +L   +Y+P++
Sbjct: 119 QGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQ 178
Query: 193 DDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCA 252
            D+L AR  T G+ E  F      +     +++ DVGGQR+ER++W   F+ V++++F  
Sbjct: 179 QDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLV 232
Query: 253 AISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 286
           + SE+DQ L ED Q NR+ E+  +F+ ++    F
Sbjct: 233 SSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 20/249 (8%)
Query: 45  KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
           K + K+LLLGAGESGKST  KQ++++    FD+   + +   I++NV + ++VL D  ++
Sbjct: 7   KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP-------RLTKELAEDIETLWADPAI 157
           L     D+       +N+  G+KL     R           R+  +    I  LW D  I
Sbjct: 67  LHIPWGDN-------KNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGI 119
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
           Q  Y    E QL +   YF++NL +L   +Y+P++ D+L AR  T G+ E  F      +
Sbjct: 120 QNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------E 173
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
                +++ DVGGQR+ER++W   F+ V++++F  + SE+DQ L ED Q NR+ E+  +F
Sbjct: 174 IKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIF 233
Query: 278 DWVLKQPCF 286
           + ++    F
Sbjct: 234 ETIVNNRVF 242

>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402

Iteration: 1
 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 24/280 (8%)
Query: 13  CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
           C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI KQ+++
Sbjct: 3   CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70  LFQTGFD-------EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS--- 119
           L   GF+       +   KS      A   Q IK   +  KE  +    +M  +V     
Sbjct: 63  LHVNGFNGGEGGEEDPNAKSNSDGEKATKVQDIK---NNLKEAIETIVAAMSNLVPPVEL 119
Query: 120 ENKEIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFM 177
            N E   ++  I   ++ P      E  E  + LW D  ++  Y   NE QL DCA YF+
Sbjct: 120 ANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFL 179
Query: 178 ENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRK 237
           + +  +   +YVP+  D+L  RV T+G+ E +F      +     + +FDVGGQR+ERRK
Sbjct: 180 DKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRK 233
Query: 238 WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
           WI  F  V+A+IF  A S Y+  + ED Q NR+ E   LF
Sbjct: 234 WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 273

>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394

Iteration: 1
 Score =  147 bits (371), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 144/277 (51%), Gaps = 18/277 (6%)
Query: 13  CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
           C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI KQ+++
Sbjct: 3   CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70  LFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS---ENK 122
           L   GF+    E + ++  S         ++ + +  KE  +    +M  +V      N 
Sbjct: 63  LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANP 122
Query: 123 EIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
           E   ++  I   ++ P      E  E  + LW D  ++  Y   NE QL DCA YF++ +
Sbjct: 123 ENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKI 182
Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
             +   +YVP+  D+L  RV T+G+ E +F      +     + +FDVGGQR+ERRKWI 
Sbjct: 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQ 236
Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
            F  V+A+IF  A S Y+  + ED Q NR+ E   LF
Sbjct: 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 273

>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402

Iteration: 1
 Score =  147 bits (371), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 144/277 (51%), Gaps = 18/277 (6%)
Query: 13  CSKNRRYNAADSEENAQ---TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL 69
           C  N +     +EE AQ     +IE++++++ +  +   +LLLLGAGESGKSTI KQ+++
Sbjct: 3   CLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRI 62
Query: 70  LFQTGFD----EAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSS---ENK 122
           L   GF+    E + ++  S         ++ + +  KE  +    +M  +V      N 
Sbjct: 63  LHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELANP 122
Query: 123 EIGEKLSEIGGRLDYPRL--TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL 180
           E   ++  I   ++ P      E  E  + LW D  ++  Y   NE QL DCA YF++ +
Sbjct: 123 ENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKI 182
Query: 181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH 240
             +   +YVP+  D+L  RV T+G+ E +F      +     + +FDVGGQR+ERRKWI 
Sbjct: 183 DVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQ 236
Query: 241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
            F  V+A+IF  A S Y+  + ED Q NR+ E   LF
Sbjct: 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLF 273

>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 20/249 (8%)
Query: 45  KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKE 104
           K + K+LLLGAGESGKST  KQ++++    FD+   + +   I++NV + ++VL D  ++
Sbjct: 7   KRLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREK 66
Query: 105 LAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYP-------RLTKELAEDIETLWADPAI 157
           L     D+       +N+  G+KL     R           R+  +    I  LW D  I
Sbjct: 67  LHIPWGDN-------KNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGI 119
Query: 158 QETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHK 217
           Q  Y    E QL +   YF++NL +L   +Y+P++ D+L AR  T G+ E  F      +
Sbjct: 120 QNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------E 173
Query: 218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF 277
                +++ DVGG R+ER++W   F+ V++++F  + SE+DQ L ED Q NR+ E+  +F
Sbjct: 174 IKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIF 233
Query: 278 DWVLKQPCF 286
           + ++    F
Sbjct: 234 ETIVNNRVF 242

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	1e-82
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	3e-81
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	5e-80
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	2e-77
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	4e-72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score =  253 bits (648), Expect = 1e-82
 Identities = 211/247 (85%), Positives = 229/247 (92%)

Query: 41  TKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYD 100
             +  HI+KLLLLGAGESGKSTIFKQIKLLFQTGFDE ELKSY+ VIHANVYQTIK+L+D
Sbjct: 3   MGSGIHIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHD 62

Query: 101 GSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQET 160
           G+KE AQNETDS K+++SSE+  IGEKLSEIGGRLDYPRLTK++AE IETLW DPAIQET
Sbjct: 63  GTKEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQET 122

Query: 161 YAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSG 220
            A GNELQ+PDC  Y MENL+RLSD NY+PTK+DVLYARVRTTGVVEIQFSPVGE+KKSG
Sbjct: 123 CARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSG 182

Query: 221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 280
           EVYRLFDVGGQRNERRKWIHLFEGV+AVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV
Sbjct: 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 242

Query: 281 LKQPCFE 287
           LKQPCFE
Sbjct: 243 LKQPCFE 249

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score =  250 bits (640), Expect = 3e-81
 Identities = 82/279 (29%), Positives = 141/279 (50%), Gaps = 12/279 (4%)

Query: 9   MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK 68
           MG   S        D     ++  I+R + ++ +    + K+LLLGAGESGKST  KQ++
Sbjct: 1   MGCTLSAE------DKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMR 54

Query: 69  LLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKL 128
           ++    FD+   + +   I++NV + ++VL D  ++L     D+   +   +      + 
Sbjct: 55  IIHGQDFDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRA 114

Query: 129 SEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANY 188
                 +   R+  +    I  LW D  IQ  Y    E QL +   YF++NL +L   +Y
Sbjct: 115 PMAAQGMVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDY 174

Query: 189 VPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAV 248
           +P++ D+L AR  T G+ E  F            +++ DVGGQR+ER++W   F+ V+++
Sbjct: 175 IPSQQDILLARRPTKGIHEYDFEIKNVP------FKMVDVGGQRSERKRWFECFDSVTSI 228

Query: 249 IFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           +F  + SE+DQ L ED Q NR+ E+  +F+ ++    F 
Sbjct: 229 LFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score =  247 bits (631), Expect = 5e-80
 Identities = 105/267 (39%), Positives = 156/267 (58%), Gaps = 13/267 (4%)

Query: 21  AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL 80
           A D     ++  I+R + ++ +      KLLLLGAGESGKSTI KQ+K++ + G+ E E 
Sbjct: 6   AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEEC 65

Query: 81  KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
           K Y +V+++N  Q+I  +      L  +  D+          +   +L  + G  +   +
Sbjct: 66  KQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDA-------ARADDARQLFVLAGAAEEGFM 118

Query: 141 TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARV 200
           T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ DVL  RV
Sbjct: 119 TAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRV 178

Query: 201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT 260
           +TTG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  
Sbjct: 179 KTTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV 232

Query: 261 LFEDEQKNRMMETKELFDWVLKQPCFE 287
           L EDE+ NRM E+ +LFD +     F 
Sbjct: 233 LAEDEEMNRMHESMKLFDSICNNKWFT 259

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score =  242 bits (617), Expect = 2e-77
 Identities = 86/295 (29%), Positives = 138/295 (46%), Gaps = 28/295 (9%)

Query: 9   MGLLCSK-NRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQI 67
           MG L +         +  +     +IE++++++ +  +   +LLLLGAGESGKSTI KQ+
Sbjct: 1   MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQM 60

Query: 68  KLLFQTGFDE---------------AELKSYISVIHANVYQTIKVLYDGSKELAQNETDS 112
           ++L   GF+                 E  + +  I  N+ + I+ +      L      +
Sbjct: 61  RILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPVELA 120

Query: 113 MKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDC 172
                   N+   + +  +    D+     E  E  + LW D  ++  Y   NE QL DC
Sbjct: 121 NPE-----NQFRVDYILSVMNVPDFD-FPPEFYEHAKALWEDEGVRACYERSNEYQLIDC 174

Query: 173 ANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQR 232
           A YF++ +  +   +YVP+  D+L  RV T+G+ E +F     +      + +FDVGGQR
Sbjct: 175 AQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKFQVDKVN------FHMFDVGGQR 228

Query: 233 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 287
           +ERRKWI  F  V+A+IF  A S Y+  + ED Q NR+ E   LF  +       
Sbjct: 229 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score =  226 bits (576), Expect = 4e-72
 Identities = 86/246 (34%), Positives = 138/246 (56%), Gaps = 14/246 (5%)

Query: 42  KAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDG 101
              +   KLLLLG GESGKST  KQ++++  +G+ + + + +  +++ N++  ++ +   
Sbjct: 2   ADARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMI-- 59

Query: 102 SKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETY 161
                    D++K     E+ +   +L                 + I++LW DP IQE Y
Sbjct: 60  ------RAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECY 113

Query: 162 AHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGE 221
               E QL D   Y++ +L R++D +Y+PT+ DVL  RV TTG++E  F           
Sbjct: 114 DRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPTTGIIEYPF------DLQSV 167

Query: 222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL 281
           ++R+ DVGGQR+ERRKWIH FE V++++F  A+SEYDQ L E + +NRM E+K LF  ++
Sbjct: 168 IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227

Query: 282 KQPCFE 287
             P F+
Sbjct: 228 TYPWFQ 233

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 13/102 (12%)

Query: 179 NLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSP--VGEHKKSGEVYRLFDVGGQRNERR 236
           NL+ +        K +++         +   F P  +GE K     + L+ V GQ     
Sbjct: 30  NLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89

Query: 237 KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD 278
               +  GV  ++F A           D   NR+    E   
Sbjct: 90  SRKLILRGVDGIVFVA-----------DSAPNRLRANAESMR 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 47/355 (13%), Positives = 99/355 (27%), Gaps = 85/355 (23%)

Query: 19  YNAADSEENA-QTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDE 77
            +  D  ++     EI+  I  +         L L     S +  + ++    F    +E
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVS---GTLRLFWTLLSKQEEMVQK----F---VEE 85

Query: 78  AELKSY---ISVIHANVYQT--IKVLYDGSKELAQNETDSM-KFVVSSENK--EIGEKLS 129
               +Y   +S I     Q   +  +Y   ++   N+     K+ VS      ++ + L 
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 130 EIGGRLDYPRLT--------KE-LAEDIETLWADPAIQETYAH-------GNELQLPDCA 173
           E+  R     +         K  +A  ++       +Q             N     +  
Sbjct: 146 EL--R-PAKNVLIDGVLGSGKTWVA--LDVC-LSYKVQCKMDFKIFWLNLKNC----NSP 195

Query: 174 NYFMENLQRLS---DANYVPTKDDVLYARVRTTGVVE----IQFSPVGEHKKS------- 219
              +E LQ+L    D N+    D     ++R   +      +  S    ++         
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNV 253

Query: 220 --GEVYRLFDVGGQ-----RNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMME 272
              + +  F++  +     R        + + +SA        ++       +      E
Sbjct: 254 QNAKAWNAFNLSCKILLTTRF-----KQVTDFLSAATTTHISLDHHSMTLTPD------E 302

Query: 273 TKELFDWVLKQPCF----EVFFCATSALHITAFVACEHVSGMHWQTVGNFFLKKK 323
            K L    L         EV    T+   ++            W    +    K 
Sbjct: 303 VKSLLLKYLDCRPQDLPREV--LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	100.0
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	100.0
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	100.0
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	100.0
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	100.0
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.19
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.16
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.15
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.14
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.12
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.1
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.1
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.03
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.91
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.88
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.88
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.87
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.86
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.86
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.86
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.85
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.84
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.83
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.82
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.82
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.81
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.81
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.81
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.81
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.79
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.78
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.77
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.77
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.77
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.77
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.75
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.75
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.75
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.74
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.74
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.74
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.74
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.73
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.73
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.71
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.71
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.7
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.7
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.68
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.68
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.68
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.68
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.67
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.66
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.65
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.65
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.65
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.65
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.64
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.64
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.64
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.64
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.62
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.62
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.62
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.6
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.59
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.58
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.58
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.57
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.56
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.55
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.55
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.53
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.52
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.51
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.5
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.49
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.48
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.48
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.42
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.42
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.39
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.73
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.23
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.11
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.05
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	98.01
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.98
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.98
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	97.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.9
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.88
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	97.77
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.76
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	97.74
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.74
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.71
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.67
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.64
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.63
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	97.61
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	97.6
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.58
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.55
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.54
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.47
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.47
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.4
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.38
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	97.36
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.27
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.25
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.18
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.1
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.01
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	96.95
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.74
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	96.65
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.62
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.56
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.51
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.43
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.36
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	96.33
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	96.29
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.22
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	96.19
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.15
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	96.12
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.11
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.11
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.05
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	96.01
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.98
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	95.96
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.92
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	95.89
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	95.84
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	95.83
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	95.8
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.79
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	95.79
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	95.75
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.75
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.73
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.72
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.72
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	95.69
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.65
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.65
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.61
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.6
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.54
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.54
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.54
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.53
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.49
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.46
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.46
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.44
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.43
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.41
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.41
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.4
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.32
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.31
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.31
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	95.27
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.27
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.25
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.24
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.21
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.17
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.16
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.16
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.13
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.13
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	95.12
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.11
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	95.11
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	95.09
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.08
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.06
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.05
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.05
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.03
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	95.02
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.02
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.01
1wb1_A	482	Translation elongation factor SELB; selenocysteine	94.99
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.99
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.97
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	94.97
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.96
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.96
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	94.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.95
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.93
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.91
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.91
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	94.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.88
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.87
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.87
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.86
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.86
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.85
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.84
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.84
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.84
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	94.81
1g6h_A	257	High-affinity branched-chain amino acid transport	94.8
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.79
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.79
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	94.78
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.78
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	94.78
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.77
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	94.76
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.75
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	94.73
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.73
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.72
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.7
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.69
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.69
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	94.69
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.68
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.67
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.67
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.67
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.63
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.63
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.6
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.59
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.58
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	94.58
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	94.57
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	94.56
1via_A	175	Shikimate kinase; structural genomics, transferase	94.55
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.55
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.55
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	94.55
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.54
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.49
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.49
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.47
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	94.46
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.46
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	94.45
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.44
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.43
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.41
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.41
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.4
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.38
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	94.34
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.32
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.28
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.26
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.25
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.23
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	94.23
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	94.23
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.22
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	94.21
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.2
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	94.19
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.17
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.15
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.11
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.1
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	94.1
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	94.08
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.05
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	94.05
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.03
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.01
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.99
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.97
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.95
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	93.94
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	93.94
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	93.94
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	93.93
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.9
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	93.9
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.86
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.86
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.86
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.83
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	93.82
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.82
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.81
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.79
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.77
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.74
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	93.72
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	93.72
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.7
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.67
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.66
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.66
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.66
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.64
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.64
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.63
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.63
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.62
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	93.62
3co5_A	143	Putative two-component system transcriptional RES	93.61
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.61
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	93.6
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.57
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	93.55
2cvh_A	220	DNA repair and recombination protein RADB; filamen	93.55
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	93.53
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.5
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.48
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.47
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.43
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.43
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.42
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	93.42
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	93.41
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	93.4
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.34
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.34
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	93.34
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	93.32
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.32
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	93.3
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	93.29
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	93.28
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	93.25
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.21
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	93.2
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	93.19
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.18
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.18
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.16
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	93.13
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.13
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	93.1
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	93.08
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.08
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.08
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	93.01
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.0
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	92.99
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	92.96
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	92.95
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	92.95
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	92.93
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.93
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	92.9
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	92.87
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	92.87
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.84
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	92.83
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	92.8
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	92.76
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.74
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	92.72
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.69
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	92.68
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	92.67
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	92.6
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	92.54
2ewv_A	372	Twitching motility protein PILT; pilus retraction	92.5
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.45
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	92.41
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.31
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.3
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	92.2
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	92.17
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	92.12
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	92.07
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.99
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	91.96
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	91.95
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	91.93
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	91.9
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	91.9
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	91.85
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	91.85
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	91.84
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	91.81
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.73
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	91.71
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	91.69
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.69
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	91.68
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.66
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.6
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	91.56
3bos_A	242	Putative DNA replication factor; P-loop containing	91.54
2og2_A	359	Putative signal recognition particle receptor; nuc	91.47
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	91.45
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	91.42
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	91.39
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	91.36
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	91.36
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	91.34
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	91.34
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	91.3
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	91.3
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	91.29
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	91.26
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	91.12
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	91.03
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	91.02
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	90.99
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	90.95
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	90.85
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	90.84
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	90.79
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	90.79
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	90.78
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	90.71
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	90.67
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	90.67
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.67
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	90.63
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	90.63
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	90.57
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	90.55
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	90.55
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	90.48
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	90.45
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	90.38
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	90.33
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	90.28
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	90.25
2chg_A	226	Replication factor C small subunit; DNA-binding pr	90.11
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	90.06
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	89.99
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	89.99
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	89.98
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	89.97
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	89.85
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	89.75
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	89.71
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	89.69
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	89.68
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	89.54
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	89.44
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	89.43
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	89.41
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	89.4
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	89.36
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	89.35
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	89.33
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	89.15
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	89.13
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	89.09
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	88.98
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	88.96
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	88.96
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	88.76
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	88.73
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	88.71
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	88.58
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	88.52
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	88.49
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	88.46
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	88.44
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	88.44
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	88.4
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	88.38
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	88.37
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	88.34
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	88.24
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	88.2
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	88.17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	88.13
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	88.01
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	87.95
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	87.91
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	87.84
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	87.75
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	87.73
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	87.69
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	87.54
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	87.52

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=100.00  E-value=1.3e-70  Score=534.39  Aligned_cols=294  Identities=37%  Similarity=0.595  Sum_probs=246.7

Q ss_pred             hhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 019426           21 AADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYD  100 (341)
Q Consensus        21 ~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~  100 (341)
                      .++++++++|++||++|++++++.++.+|+||||+|||||||++||||++|.+||+++|+..|+++|+.|++++|+.|++
T Consensus         6 ~~~~~~~~~s~~id~~l~~~~~~~~~~~klLlLG~geSGKST~~KQmkii~~~g~~~~e~~~~~~~i~~N~~~~~~~l~~   85 (353)
T 1cip_A            6 AEDKAAVERSKMIDRNLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIR   85 (353)
T ss_dssp             -------------------------CEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhcccceEEEEcCCCCCchhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhh
Q 019426          101 GSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENL  180 (341)
Q Consensus       101 a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l  180 (341)
                      +|+.++++..       +++++..++.+..+....+...+++++++.|..||+||+||+||.++++|+|+|++.|||+++
T Consensus        86 ~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~  158 (353)
T 1cip_A           86 AMGRLKIDFG-------DAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDL  158 (353)
T ss_dssp             HHHHHTCCCS-------STTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTH
T ss_pred             HHHHhCCCCC-------CcchHHHHHHHHhhccccccccCCHHHHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHH
Confidence            9999887532       455666666666553222124688999999999999999999999999999999999999999


Q ss_pred             hhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccc
Q 019426          181 QRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQT  260 (341)
Q Consensus       181 ~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~  260 (341)
                      +||+.++|.||.+|++++|.||+|+.+..|      .++++++++||+|||+++|++|.+||+++++||||+|+|+|||+
T Consensus       159 ~ri~~~~Y~PT~~Dil~~~~~T~Gi~~~~~------~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~  232 (353)
T 1cip_A          159 DRIAQPNYIPTQQDVLRTRVKTTGIVETHF------TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV  232 (353)
T ss_dssp             HHHTSTTCCCCHHHHHTCCCCCCSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCE
T ss_pred             HHHhcCCCCCCccccccccCceeceEEEEE------eeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccccc
Confidence            999999999999999999999999999999      77889999999999999999999999999999999999999999


Q ss_pred             cccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc-chhhhhh
Q 019426          261 LFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE-NFLHAVS  338 (341)
Q Consensus       261 l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  338 (341)
                      +.||+..|||++++.+|+.+++++++.+       .||+||+| +|++     ..++ ..+++++|||+|+| ++.+++.
T Consensus       233 l~ed~~~nr~~e~~~~~~~i~~~~~~~~-------~piiLv~NK~DL~-----~~ki-~~~~l~~~fp~~~g~~~~~e~~  299 (353)
T 1cip_A          233 LAEDEEMNRMHESMKLFDSICNNKWFTD-------TSIILFLNKKDLF-----EEKI-KKSPLTICYPEYAGSNTYEEAA  299 (353)
T ss_dssp             ETTEEEEEHHHHHHHHHHHHHTCGGGTT-------SEEEEEEECHHHH-----HHHH-TTSCGGGTCTTCCSCSCHHHHH
T ss_pred             ccccchhhhHHHHHHHHHHHHcCccccC-------CcEEEEEECcCch-----hhhc-cccchhhcccccCCCCCHHHHH
Confidence            9999999999999999999999999988       89999999 9999     6666 45899999999999 8888776


Q ss_pred             hc
Q 019426          339 KQ  340 (341)
Q Consensus       339 ~~  340 (341)
                      +|
T Consensus       300 ~~  301 (353)
T 1cip_A          300 AY  301 (353)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=100.00  E-value=8e-70  Score=530.48  Aligned_cols=299  Identities=31%  Similarity=0.568  Sum_probs=238.8

Q ss_pred             ccccccCCCCCChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 019426            9 MGLLCSKNRRYNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIH   88 (341)
Q Consensus         9 mg~~~~~~~~~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~   88 (341)
                      |||++|      .++++++++|++||++|++++++.++.+||||||+||||||||+|||+++|.+||+++|+..|+++|+
T Consensus         1 mgc~~~------~~~~~~~~~s~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~~i~~~~~~~~~e~~~~~~~i~   74 (362)
T 1zcb_A            1 MGCTLS------AEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQDFDQRAREEFRPTIY   74 (362)
T ss_dssp             ------------------------------------CCCEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHH
T ss_pred             CCCCCC------HHHHHHHHHHHHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHHHHHhCCCCCcccHHHHHHHHH
Confidence            886443      25678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCC--------CCCCCcHHHHHHHHHhcCChHHHHH
Q 019426           89 ANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRL--------DYPRLTKELAEDIETLWADPAIQET  160 (341)
Q Consensus        89 ~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~e~~~~I~~LW~d~~vq~~  160 (341)
                      .|++++|+.|+++|+.++++.       .+++++..+..+..+....        +...+ +++++.|..||+||+||+|
T Consensus        75 ~n~~~s~~~il~a~~~~~i~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~i~~LW~d~~iq~~  146 (362)
T 1zcb_A           75 SNVIKGMRVLVDAREKLHIPW-------GDNKNQLHGDKLMAFDTRAPMAAQGMVETRVF-LQYLPAIRALWEDSGIQNA  146 (362)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCC-------SSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCC-------CCcccHHHHHHHHhhcccccccccccCcchhH-HHHHHHHHHHHCCHHHHHH
Confidence            999999999999999988653       2456666666666554321        11245 8999999999999999999


Q ss_pred             HHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCcccccccccc
Q 019426          161 YAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIH  240 (341)
Q Consensus       161 ~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~  240 (341)
                      |+++++|+|+|++.|||++++||+.++|.||++|++++|.+|+|+.+..|      .++++++++||+|||+++|++|.+
T Consensus       147 ~~r~~e~~l~ds~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~~~~------~~~~~~l~i~Dt~Gq~~~r~~w~~  220 (362)
T 1zcb_A          147 YDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFE  220 (362)
T ss_dssp             HHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEEEEE------EETTEEEEEEEECC-------CTT
T ss_pred             HHhcchhhhcccHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEEEEe------eeCCeEEEEEeccchhhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999      778899999999999999999999


Q ss_pred             ccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccccccccccc
Q 019426          241 LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFF  319 (341)
Q Consensus       241 ~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~  319 (341)
                      ||+++++||||+|+|+|||+|.||+..|||++++.+|+.+++++++.+       .|||||+| +|++     ..++ .+
T Consensus       221 ~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~-------~piILv~NK~DL~-----~~ki-~~  287 (362)
T 1zcb_A          221 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN-------VSIILFLNKTDLL-----EEKV-QV  287 (362)
T ss_dssp             SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT-------SEEEEEEECHHHH-----HHHT-TT
T ss_pred             HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC-------CCEEEEEEChhhh-----hhhc-cc
Confidence            999999999999999999999999999999999999999999999988       89999999 9999     6676 47


Q ss_pred             cceeeecccccc--chhhhhhhc
Q 019426          320 LKKKIFWYSFAE--NFLHAVSKQ  340 (341)
Q Consensus       320 ~~~~~~~~~~~~--~~~~~~~~~  340 (341)
                      +++++|||+|+|  ++.+++.+|
T Consensus       288 ~~l~~~fp~y~g~~~~~~e~~~~  310 (362)
T 1zcb_A          288 VSIKDYFLEFEGDPHCLRDVQKF  310 (362)
T ss_dssp             CCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             cchhhcCccccCCCCCHHHHHHH
Confidence            899999999998  677777654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=100.00  E-value=2.3e-69  Score=532.62  Aligned_cols=299  Identities=30%  Similarity=0.523  Sum_probs=235.8

Q ss_pred             ccccccCCCC-CChhhHHHHHhcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHH---------
Q 019426            9 MGLLCSKNRR-YNAADSEENAQTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEA---------   78 (341)
Q Consensus         9 mg~~~~~~~~-~~~~~~~~~~~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~---------   78 (341)
                      ||||+|.... ...++++++++|++||++|++++++.++++|+||||+||||||||+||||++|.+||+.+         
T Consensus         1 mg~~~s~~~~~~~~~~~~~~~~~~~Id~~l~~~~~~~~~~~klLLLG~geSGKSTi~KQmkiih~~gfs~~E~~~~~~~~   80 (402)
T 1azs_C            1 MGCLGNSKTEDQRNEEKAQREANKKIEKQLQKDKQVYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAA   80 (402)
T ss_dssp             -----------------------------------CCTTEEEEEEEESTTSSHHHHHHHHHHHHCCC-------------
T ss_pred             CCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHhhccceEEEecCCCCchhhHHHHHHHHhCCCCChHHhhhhHHHH
Confidence            8987765321 124567899999999999999999999999999999999999999999999999999976         


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhc
Q 019426           79 ------ELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLW  152 (341)
Q Consensus        79 ------e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW  152 (341)
                            |+..|+++|+.|++++|+.|+++|..+.+..     ...+++++..++.+..+.... ...+++++++.|..||
T Consensus        81 ~~~~~~e~~~~~~~i~~Ni~~~~~~i~~a~~~l~~~i-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~lW  154 (402)
T 1azs_C           81 RSNSDGEKATKVQDIKNNLKEAIETIVAAMSNLVPPV-----ELANPENQFRVDYILSVMNVP-DFDFPPEFYEHAKALW  154 (402)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHHHHHHSSSCC-----CCSSGGGHHHHHHHHHTTTCS-SCCCCHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----ccCCchhHHHHHHHHhhcccC-CCCCCHHHHHHHHHHH
Confidence                  5667999999999999999999999886321     123566776777776654322 2468999999999999


Q ss_pred             CChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCcc
Q 019426          153 ADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQR  232 (341)
Q Consensus       153 ~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr  232 (341)
                      +||+||+||.++++|+|+|++.|||++++||+.++|.||++|++++|.+|+|+.+..|      .++++++++||+|||+
T Consensus       155 ~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~TiGi~~~~~------~~~~v~l~iwDtaGQe  228 (402)
T 1azs_C          155 EDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCRVLTSGIFETKF------QVDKVNFHMFDVGGQR  228 (402)
T ss_dssp             HCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTCTTCCCCHHHHHHCCCCCCSEEEEEE------EETTEEEEEEEECCSG
T ss_pred             cCHHHHHHHHhcccceeccchhhHHHHHHHhhccccCCccccccccccceeeeEEEEe------ecCCccceecccchhh
Confidence            9999999999999999999999999999999999999999999999999999999999      7788999999999999


Q ss_pred             ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCccc
Q 019426          233 NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMH  311 (341)
Q Consensus       233 ~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~  311 (341)
                      .+|++|.+||+++++||||+|+++|||++.||+..|||++++.+|+.+++++++.+       .||+||+| +|++    
T Consensus       229 ~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~-------~piiLvgNK~DL~----  297 (402)
T 1azs_C          229 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT-------ISVILFLNKQDLL----  297 (402)
T ss_dssp             GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS-------CCEEEEEECHHHH----
T ss_pred             hhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC-------CeEEEEEEChhhh----
Confidence            99999999999999999999999999999999999999999999999999998887       89999999 9998    


Q ss_pred             cccccccc-cceeeecccccc
Q 019426          312 WQTVGNFF-LKKKIFWYSFAE  331 (341)
Q Consensus       312 ~~~~~~~~-~~~~~~~~~~~~  331 (341)
                       ..++..+ +++++|||+|+|
T Consensus       298 -~~ki~~~~~~l~~~fp~y~~  317 (402)
T 1azs_C          298 -AEKVLAGKSKIEDYFPEFAR  317 (402)
T ss_dssp             -HHHHHHCSSCGGGTCGGGGT
T ss_pred             -hhhhcccccchhhccccccc
Confidence             5555433 489999999984

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=100.00  E-value=1.6e-68  Score=514.16  Aligned_cols=272  Identities=33%  Similarity=0.609  Sum_probs=251.4

Q ss_pred             HhhcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchH
Q 019426           43 AEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENK  122 (341)
Q Consensus        43 ~~~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~  122 (341)
                      +.++++|+||||+||||||||+||||++|.+||+++|+..|+++|+.|++++|+.|+++|+.++++.       .+++++
T Consensus         3 ~~~~~~klLlLG~geSGKSTi~KQmkiih~~gfs~~e~~~~~~~i~~N~~~~~~~li~a~~~l~i~~-------~~~~~~   75 (327)
T 3ohm_A            3 DARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY-------KYEHNK   75 (327)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCC-------SSTHHH
T ss_pred             hhcccceEEEEcCCCccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCC-------CCchhH
Confidence            4567899999999999999999999999999999999999999999999999999999999998763       356777


Q ss_pred             HHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccc
Q 019426          123 EIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRT  202 (341)
Q Consensus       123 ~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T  202 (341)
                      ..++.+.++.... ...+++++++.|..||+||+||+||+++++|+|+|++.|||++++||++++|.||++|+||+|.||
T Consensus        76 ~~~~~~~~~~~~~-~~~~~~e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dilr~r~~T  154 (327)
T 3ohm_A           76 AHAQLVREVDVEK-VSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVRVPT  154 (327)
T ss_dssp             HHHHHHHTCCGGG-CCCCCTTHHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHSTTCCCCHHHHTTCCCCC
T ss_pred             HHHHHHhcccccc-cccccHHHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhccCCCccccchhcccCce
Confidence            8888887654432 246889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhc
Q 019426          203 TGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK  282 (341)
Q Consensus       203 ~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n  282 (341)
                      +|+.+..|      .++++++++||+|||+++|++|.+||++++++|||+|+|+|||++.|+...|||++++.+|+++++
T Consensus       155 iGi~~~~~------~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~  228 (327)
T 3ohm_A          155 TGIIEYPF------DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT  228 (327)
T ss_dssp             CSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT
T ss_pred             eeEEEEEE------EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh
Confidence            99999999      788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc--chhhhhhhcC
Q 019426          283 QPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE--NFLHAVSKQI  341 (341)
Q Consensus       283 ~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  341 (341)
                      ++++.+       .||+||+| +|++     ..|++ ..++++|||+|+|  ++.+++.+||
T Consensus       229 ~~~~~~-------~~iiL~~NK~DL~-----~~ki~-~~~l~~~fp~y~g~~~~~e~a~~fi  277 (327)
T 3ohm_A          229 YPWFQN-------SSVILFLNKKDLL-----EEKIM-YSHLVDYFPEYDGPQRDAQAAREFI  277 (327)
T ss_dssp             SGGGTT-------CEEEEEEECHHHH-----HHHTT-TSCGGGTCTTCCSCSSCHHHHHHHH
T ss_pred             hhccCC-------ceEEEEEECchhh-----hhhhc-cchHhhhchhccCCCCCHHHHHHHH
Confidence            999988       89999999 9999     66774 5789999999999  7999887763

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=100.00  E-value=1.6e-66  Score=502.23  Aligned_cols=266  Identities=32%  Similarity=0.523  Sum_probs=241.7

Q ss_pred             hcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEI  124 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~  124 (341)
                      ++++|+||||+||||||||+||||++|.+||+++|+..|+++|+.|++++|+.|+++|+.++++..       +++++..
T Consensus         3 ~~~~klLLLG~geSGKSTi~KQmkii~~~gfs~~e~~~~~~~i~~N~~~~~~~li~~~~~l~i~~~-------~~~~~~~   75 (340)
T 4fid_A            3 AKPITVMLLGSGESGKSTIAKQLKILFGGGFPEQERATHKSSICSNVVTCMRTLIEQSAILNHPMK-------YQPKSKE   75 (340)
T ss_dssp             -CCEEEEEEECTTSSHHHHHHHHHHHTSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCCS-------CCCCSGG
T ss_pred             CCcceEEEECCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCC-------ChhhHHH
Confidence            467999999999999999999999999999999999999999999999999999999999987643       2333322


Q ss_pred             HHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccC
Q 019426          125 GEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTG  204 (341)
Q Consensus       125 ~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~G  204 (341)
                      +   .+..  ...+.+++++++.|..||+||+||+||+++++|+|+|++.|||++++||+.++|.||++|++++|.+|+|
T Consensus        76 ~---~~~~--~~~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~~~Y~PT~~Dil~~~~~TiG  150 (340)
T 4fid_A           76 F---TTED--PVTLPFSPELVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAMEDYVPTEEDLIHNRTKTTG  150 (340)
T ss_dssp             G---SCCS--CCCSSCCTTHHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSSTTCCCCHHHHHHSCCCCCS
T ss_pred             H---hhcc--cCCCCCCHHHHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhcccCCccccceeecccceee
Confidence            2   1222  2235688999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426          205 VVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  284 (341)
Q Consensus       205 i~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~  284 (341)
                      +.+..|      .++++++++||+|||+++|++|.+||+++++||||+|+|+|||++.||...|||++++.+|+.+++++
T Consensus       151 i~~~~~------~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~  224 (340)
T 4fid_A          151 IHEYDF------VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE  224 (340)
T ss_dssp             CEEEEE------ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred             eEEEEE------EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence            999999      78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc-chhhhhhhcC
Q 019426          285 CFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE-NFLHAVSKQI  341 (341)
Q Consensus       285 ~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  341 (341)
                      ++.+       .||+||+| +|++     ..|+ ..+++++|||+|+| ++++++.+||
T Consensus       225 ~~~~-------~piiLv~NK~DL~-----~eki-~~~~l~~~fp~y~g~~~~e~a~~~i  270 (340)
T 4fid_A          225 FLKG-------AVKLIFLNKMDLF-----EEKL-TKVPLNTIFPEYTGGDNAVMGAQYI  270 (340)
T ss_dssp             GGTT-------SEEEEEEECHHHH-----HHHH-HHSCGGGTCTTCCCTTCHHHHHHHH
T ss_pred             ccCC-------CeEEEEEECchhh-----hhhc-CcchHHHhhhhhcCCCCHHHHHHHH
Confidence            9988       89999999 9999     6666 57899999999999 8899987764

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=100.00  E-value=3.1e-61  Score=468.52  Aligned_cols=282  Identities=75%  Similarity=1.155  Sum_probs=242.5

Q ss_pred             cccceEEeccCCCcchhHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIG  125 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~  125 (341)
                      +++|+||||+|||||||++|||+++|.+||+++|+..|+++|+.|++++|+.|+++|+.+.+...+...+.++++++..+
T Consensus         8 ~~~k~lllG~~~sGKsT~~kq~~~~~~~g~~~~e~~~~~~~i~~Ni~~~~~~ll~a~~~l~~~~~~~~~~~l~~~~~~~~   87 (354)
T 2xtz_A            8 HIRKLLLLGAGESGKSTIFKQIKLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIG   87 (354)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHHHSCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCTTCCCHHHHHHH
T ss_pred             CceeEEEECCCCCcHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccCChhHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999886544333444566776666


Q ss_pred             HHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccccCe
Q 019426          126 EKLSEIGGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRTTGV  205 (341)
Q Consensus       126 ~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi  205 (341)
                      ..+..+....+.+.+++++++.|..||+||+||+||.|+++++|+|++.|||++++||+.++|.||.+|++++|.+|+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~~~Y~PT~~D~~~~r~~T~Gi  167 (354)
T 2xtz_A           88 EKLSEIGGRLDYPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSDINYIPTKEDVLYARVRTTGV  167 (354)
T ss_dssp             HHHHHHHHHCSSCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHSTTCCCCHHHHHHCCCCCCSE
T ss_pred             HHHHhcccccccccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhcCCCCCCchheeeecccccce
Confidence            66655433333457899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426          206 VEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  285 (341)
Q Consensus       206 ~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~  285 (341)
                      .|+.|...+.+..+.+++++||+|||+.+|++|.+||++++++|||+|+++|||+|.|+...|||++++.+|+.++++++
T Consensus       168 ~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~  247 (354)
T 2xtz_A          168 VEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  247 (354)
T ss_dssp             EEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGG
T ss_pred             eeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccc
Confidence            99999321100014689999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCccccCCceeEEEEec-cCccCccccccccccccceeee--ccccc----c-chhhhhhhc
Q 019426          286 FEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIF--WYSFA----E-NFLHAVSKQ  340 (341)
Q Consensus       286 f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~--~~~~~----~-~~~~~~~~~  340 (341)
                      +.+       .||+|++| +|++     ..++ ..++++.+  ||+|.    | ++.+++.+|
T Consensus       248 ~~~-------~piiLvgNK~DL~-----~~k~-~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~  297 (354)
T 2xtz_A          248 FEK-------TSFMLFLNKFDIF-----EKKV-LDVPLNVCEWFRDYQPVSSGKQEIEHAYEF  297 (354)
T ss_dssp             GSS-------CEEEEEEECHHHH-----HHHT-TTSCGGGSGGGTTCCCCSSHHHHHHHHHHH
T ss_pred             cCC-------CeEEEEEECcchh-----hhhc-ccccccccccccccccccCCCcCHHHHHHH
Confidence            887       89999999 9998     5555 33666555  99996    5 677776554

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.19  E-value=2.4e-10  Score=96.30  Aligned_cols=85  Identities=16%  Similarity=0.282  Sum_probs=68.5

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|+....+      .+.+..+.+||++|+...+..|..++.+++++|||+|+++          ..++.+....+..++
T Consensus        38 t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~  101 (171)
T 1upt_A           38 TIGFNVETV------TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD----------RDRIGISKSELVAML  101 (171)
T ss_dssp             CSSEEEEEE------EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTC----------CTTHHHHHHHHHHHH
T ss_pred             cCccceEEE------EECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHH
Confidence            344544445      4557889999999999999999999999999999999997          356778888888888


Q ss_pred             cCccccCccccCCceeEEEEec-cCccCc
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      ......+       .|+++.+| +|+...
T Consensus       102 ~~~~~~~-------~piilv~nK~Dl~~~  123 (171)
T 1upt_A          102 EEEELRK-------AILVVFANKQDMEQA  123 (171)
T ss_dssp             TCGGGTT-------CEEEEEEECTTSTTC
T ss_pred             hchhhCC-------CEEEEEEECCCCcCC
Confidence            8765555       78998888 999854

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.16  E-value=2.2e-10  Score=99.15  Aligned_cols=86  Identities=29%  Similarity=0.447  Sum_probs=68.4

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      +|.|+....+      .+++..+.+||++|+...+..|..++.+++++|||+|+++          ...+.+....+..+
T Consensus        53 ~t~~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~  116 (190)
T 2h57_A           53 PTIGFSIEKF------KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSD----------RLRMVVAKEELDTL  116 (190)
T ss_dssp             CCSSEEEEEE------ECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTC----------HHHHHHHHHHHHHH
T ss_pred             CccceeEEEE------EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence            4455555566      5667899999999999999999999999999999999987          35577777777888


Q ss_pred             hcCccc--cCccccCCceeEEEEec-cCccCc
Q 019426          281 LKQPCF--EVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       281 ~n~~~f--~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      +....+  .+       .|++|++| +|+...
T Consensus       117 ~~~~~~~~~~-------~piilv~nK~Dl~~~  141 (190)
T 2h57_A          117 LNHPDIKHRR-------IPILFFANKMDLRDA  141 (190)
T ss_dssp             HHSTTTTTSC-------CCEEEEEECTTSTTC
T ss_pred             HhChhhccCC-------CeEEEEEeCcCcccC
Confidence            776544  34       78888888 999854

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.15  E-value=2.1e-10  Score=99.13  Aligned_cols=76  Identities=21%  Similarity=0.433  Sum_probs=63.3

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||++|+...+..|..++.+++++|||+|+++          ..++.+....+..++......+       .
T Consensus        56 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  118 (181)
T 1fzq_A           56 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELLEEEKLSC-------V  118 (181)
T ss_dssp             EETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHTTCGGGTT-------C
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcC----------HHHHHHHHHHHHHHHhChhhcC-------C
Confidence            4457789999999999999999999999999999999987          3567777778888877654444       7


Q ss_pred             eEEEEec-cCccCc
Q 019426          297 HITAFVA-CEHVSG  309 (341)
Q Consensus       297 ~iilf~n-~d~~~~  309 (341)
                      |+++.+| +|+...
T Consensus       119 piilv~NK~Dl~~~  132 (181)
T 1fzq_A          119 PVLIFANKQDLLTA  132 (181)
T ss_dssp             CEEEEEECTTSTTC
T ss_pred             CEEEEEECcCcccC
Confidence            8999998 999854

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.14  E-value=5.5e-10  Score=97.27  Aligned_cols=75  Identities=17%  Similarity=0.343  Sum_probs=63.1

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||++|+...+..|.+++.+++++|||+|+++          ..++.+....+..++......+       .
T Consensus        63 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  125 (190)
T 1m2o_B           63 AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD----------PERFDEARVELDALFNIAELKD-------V  125 (190)
T ss_dssp             EETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------C
T ss_pred             EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCC----------hHHHHHHHHHHHHHHcchhhcC-------C
Confidence            4556889999999999999999999999999999999997          3567888888888887654444       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++.+| +|+..
T Consensus       126 piilv~NK~Dl~~  138 (190)
T 1m2o_B          126 PFVILGNKIDAPN  138 (190)
T ss_dssp             CEEEEEECTTSTT
T ss_pred             CEEEEEECCCCcC
Confidence            8999998 99974

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.14  E-value=2.8e-10  Score=98.24  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=63.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+..+.+||++|+...+..|..++.+++++|||+|+++          ..++.+....+..++......+       .
T Consensus        62 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  124 (189)
T 2x77_A           62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTD----------RDRMGVAKHELYALLDEDELRK-------S  124 (189)
T ss_dssp             EETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTC----------CTTHHHHHHHHHHHHTCSTTTT-------C
T ss_pred             EECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhhhhcCC-------C
Confidence            4456789999999999999999999999999999999997          3567888888888887655555       7


Q ss_pred             eEEEEec-cCccCc
Q 019426          297 HITAFVA-CEHVSG  309 (341)
Q Consensus       297 ~iilf~n-~d~~~~  309 (341)
                      |+++.+| +|+...
T Consensus       125 piilv~nK~Dl~~~  138 (189)
T 2x77_A          125 LLLIFANKQDLPDA  138 (189)
T ss_dssp             EEEEEEECTTSTTC
T ss_pred             eEEEEEECCCCcCC
Confidence            8998888 999743

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.12  E-value=5.9e-10  Score=95.84  Aligned_cols=85  Identities=20%  Similarity=0.367  Sum_probs=68.4

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|+....+      .+++..+.+||++|+...+..|..++.+++++|||+|+++          ..++.+....+..++
T Consensus        49 t~~~~~~~~------~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~  112 (186)
T 1ksh_A           49 TLGFNIKTL------EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLL  112 (186)
T ss_dssp             CSSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHH
T ss_pred             cCccceEEE------EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHH
Confidence            335454455      4567889999999999899999999999999999999987          356788888888888


Q ss_pred             cCccccCccccCCceeEEEEec-cCccCc
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      ......+       .|+++.+| +|+...
T Consensus       113 ~~~~~~~-------~piilv~nK~Dl~~~  134 (186)
T 1ksh_A          113 VEERLAG-------ATLLIFANKQDLPGA  134 (186)
T ss_dssp             TCGGGTT-------CEEEEEEECTTSTTC
T ss_pred             hChhcCC-------CcEEEEEeCccCCCC
Confidence            8755455       78998888 999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.11  E-value=3e-10  Score=99.76  Aligned_cols=74  Identities=20%  Similarity=0.471  Sum_probs=58.7

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      +++..+.+||++||...|..|..++.+++++|||+|+++          ..++.+....+..+.......+       .|
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~p  128 (198)
T 1f6b_A           66 IAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD----------HERLLESKEELDSLMTDETIAN-------VP  128 (198)
T ss_dssp             ETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------SC
T ss_pred             ECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcccCC-------Cc
Confidence            445788999999999999999999999999999999987          3568888888888887654445       78


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++++| +|+..
T Consensus       129 iilv~NK~Dl~~  140 (198)
T 1f6b_A          129 ILILGNKIDRPE  140 (198)
T ss_dssp             EEEEEECTTSTT
T ss_pred             EEEEEECCCccc
Confidence            999998 99974

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.10  E-value=2.3e-10  Score=97.88  Aligned_cols=76  Identities=20%  Similarity=0.372  Sum_probs=59.4

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+..+.+||++|+...+..|..++.+++++|||+|+++          ..++.+....+..++......+       .
T Consensus        58 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  120 (183)
T 1moz_A           58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEEELQD-------A  120 (183)
T ss_dssp             EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHTTSSTTSS-------C
T ss_pred             EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHcChhhCC-------C
Confidence            4556889999999999899999999999999999999987          3567788888888887654444       7


Q ss_pred             eEEEEec-cCccCc
Q 019426          297 HITAFVA-CEHVSG  309 (341)
Q Consensus       297 ~iilf~n-~d~~~~  309 (341)
                      |+++.+| +|+...
T Consensus       121 piilv~nK~Dl~~~  134 (183)
T 1moz_A          121 ALLVFANKQDQPGA  134 (183)
T ss_dssp             EEEEEEECTTSTTC
T ss_pred             eEEEEEECCCCCCC
Confidence            8999998 998743

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.10  E-value=6.1e-10  Score=95.72  Aligned_cols=75  Identities=17%  Similarity=0.312  Sum_probs=62.6

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||++|+...+..|..++.+++++|||+|+++          ...+.+....+..++......+       .
T Consensus        61 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  123 (181)
T 2h17_A           61 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHEDLRK-------A  123 (181)
T ss_dssp             EETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTCGGGTT-------C
T ss_pred             EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhChhhCC-------C
Confidence            3456789999999999999999999999999999999997          3567788888888887654445       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |++|.+| +|+..
T Consensus       124 piilv~NK~Dl~~  136 (181)
T 2h17_A          124 GLLIFANKQDVKE  136 (181)
T ss_dssp             EEEEEEECTTSTT
T ss_pred             eEEEEEECCCccc
Confidence            8888888 99974

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.03  E-value=1.6e-09  Score=93.85  Aligned_cols=76  Identities=20%  Similarity=0.413  Sum_probs=63.0

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+..+.+||++|+...+..|..++.+++++|||+|+++          ...+......+..++......+       .
T Consensus        63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  125 (188)
T 1zd9_A           63 TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAAD----------QEKIEASKNELHNLLDKPQLQG-------I  125 (188)
T ss_dssp             EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------C
T ss_pred             EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhCcccCC-------C
Confidence            4557789999999999889999999999999999999987          3567777888888887654445       7


Q ss_pred             eEEEEec-cCccCc
Q 019426          297 HITAFVA-CEHVSG  309 (341)
Q Consensus       297 ~iilf~n-~d~~~~  309 (341)
                      |++|++| +|+...
T Consensus       126 piilv~NK~Dl~~~  139 (188)
T 1zd9_A          126 PVLVLGNKRDLPGA  139 (188)
T ss_dssp             CEEEEEECTTSTTC
T ss_pred             CEEEEEECCCCccC
Confidence            8898888 999743

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.97  E-value=2.7e-09  Score=91.86  Aligned_cols=72  Identities=10%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.......+       .|+
T Consensus        62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~p~  124 (195)
T 1x3s_A           62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR----------DTFVKLDNWLNELETYCTRND-------IVN  124 (195)
T ss_dssp             EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHTTCCSCSC-------CEE
T ss_pred             eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCcCC-------CcE
Confidence            346789999999999999999999999999999999872          334444445555554322223       788


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|.+| +|+.
T Consensus       125 ilv~nK~Dl~  134 (195)
T 1x3s_A          125 MLVGNKIDKE  134 (195)
T ss_dssp             EEEEECTTSS
T ss_pred             EEEEECCcCc
Confidence            88888 9985

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.96  E-value=1.6e-09  Score=90.71  Aligned_cols=73  Identities=10%  Similarity=0.118  Sum_probs=53.7

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+...+..|..++.+++++|+|+|+++-          ..+.+....++.+.......+       .|+
T Consensus        49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pi  111 (167)
T 1c1y_A           49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ----------STFNDLQDLREQILRVKDTED-------VPM  111 (167)
T ss_dssp             CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSC-------CCE
T ss_pred             EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhCcCC-------CcE
Confidence            346789999999998889999999999999999999872          334444444444444222223       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      ++.+| +|+..
T Consensus       112 ilv~nK~Dl~~  122 (167)
T 1c1y_A          112 ILVGNKCDLED  122 (167)
T ss_dssp             EEEEECTTCGG
T ss_pred             EEEEECccccc
Confidence            88888 99974

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.92  E-value=3e-09  Score=89.04  Aligned_cols=70  Identities=10%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+....  .+       .|++
T Consensus        53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~--~~-------~pii  113 (168)
T 1z2a_A           53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR----------ESFEAISSWREKVVAEV--GD-------IPTA  113 (168)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHH--CS-------CCEE
T ss_pred             EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC--CC-------CCEE
Confidence            35789999999998889999999999999999999872          22333333334443321  23       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       114 lv~nK~Dl~~  123 (168)
T 1z2a_A          114 LVQNKIDLLD  123 (168)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEECcccCc
Confidence            8888 99874

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.91  E-value=6.7e-09  Score=90.79  Aligned_cols=73  Identities=10%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+...+..|..++.+++++|+|+|+++          ...+......+..+.......+       .|+
T Consensus        70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pi  132 (201)
T 3oes_A           70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTS----------LHSFQVIESLYQKLHEGHGKTR-------VPV  132 (201)
T ss_dssp             -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTC----------HHHHHHHHHHHHHHHC-----C-------CCE
T ss_pred             EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCE
Confidence            35678999999999999999999999999999999997          3456666666666666433333       688


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|++| +|+..
T Consensus       133 ilv~nK~Dl~~  143 (201)
T 3oes_A          133 VLVGNKADLSP  143 (201)
T ss_dssp             EEEEECTTCGG
T ss_pred             EEEEECccCcc
Confidence            88888 99873

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.88  E-value=3.8e-09  Score=90.03  Aligned_cols=71  Identities=13%  Similarity=0.116  Sum_probs=54.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++.          ..+......+..+.......+       .|++|
T Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piil  128 (187)
T 2a9k_A           66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDEN-------VPFLL  128 (187)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTT-------CCEEE
T ss_pred             EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            5789999999998899999999999999999999973          445555555555554322223       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       129 v~nK~Dl~~  137 (187)
T 2a9k_A          129 VGNKSDLED  137 (187)
T ss_dssp             EEECGGGGG
T ss_pred             EEECccccc
Confidence            888 99874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.88  E-value=4.2e-09  Score=87.85  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++.          ..+......+..+.......+       .|++
T Consensus        51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii  113 (168)
T 1u8z_A           51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDEN-------VPFL  113 (168)
T ss_dssp             EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTT-------SCEE
T ss_pred             EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CcEE
Confidence            35789999999998899999999999999999999973          345555555555544322223       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       114 lv~nK~Dl~~  123 (168)
T 1u8z_A          114 LVGNKSDLED  123 (168)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEECccccc
Confidence            8888 99974

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.87  E-value=1.1e-08  Score=86.75  Aligned_cols=71  Identities=11%  Similarity=0.164  Sum_probs=41.6

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh---cCccccCccccCCce
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL---KQPCFEVFFCATSAL  296 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~---n~~~f~~~~~~~~~~  296 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.   +.....+       .
T Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~-------~  119 (182)
T 1ky3_A           57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA----------SSFENIKSWRDEFLVHANVNSPET-------F  119 (182)
T ss_dssp             CEEEEEECCC----------CCSTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSCTTT-------C
T ss_pred             EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCCh----------HHHHHHHHHHHHHHHHhcccCcCC-------C
Confidence            35789999999998999999999999999999999873          22333333333333   2222223       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       120 p~ilv~nK~Dl~  131 (182)
T 1ky3_A          120 PFVILGNKIDAE  131 (182)
T ss_dssp             CEEEEEECTTSC
T ss_pred             cEEEEEECCccc
Confidence            8888888 9986

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.86  E-value=6.5e-09  Score=86.59  Aligned_cols=72  Identities=11%  Similarity=0.146  Sum_probs=54.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++++|+|+++-          ..+++....+..+.......+       .|++
T Consensus        50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii  112 (167)
T 1kao_A           50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ----------QSFQDIKPMRDQIIRVKRYEK-------VPVI  112 (167)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTTSC-------CCEE
T ss_pred             EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence            35689999999998889999999999999999999972          345555555555554322223       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       113 lv~nK~Dl~~  122 (167)
T 1kao_A          113 LVGNKVDLES  122 (167)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEECCcccc
Confidence            8888 99874

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.86  E-value=6.8e-09  Score=88.79  Aligned_cols=70  Identities=10%  Similarity=0.079  Sum_probs=50.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+......+..+..... .+       .|++|
T Consensus        59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~piil  120 (186)
T 2bme_A           59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNALTNWLTDARMLAS-QN-------IVIIL  120 (186)
T ss_dssp             EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSC-TT-------CEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcC-CC-------CcEEE
Confidence            5789999999999999999999999999999999872          223333333333322111 12       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       121 v~nK~Dl~~  129 (186)
T 2bme_A          121 CGNKKDLDA  129 (186)
T ss_dssp             EEECGGGGG
T ss_pred             EEECccccc
Confidence            888 99973

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.86  E-value=1e-08  Score=85.74  Aligned_cols=72  Identities=8%  Similarity=0.130  Sum_probs=53.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+.... -.+       .|++
T Consensus        51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~pii  112 (170)
T 1ek0_A           51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP----------QSFIKARHWVKELHEQA-SKD-------IIIA  112 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEEE
T ss_pred             EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh----------HHHHHHHHHHHHHHHhc-CCC-------CcEE
Confidence            45789999999998899999999999999999999872          33444444444444321 122       7888


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      +++| +|+...
T Consensus       113 lv~nK~Dl~~~  123 (170)
T 1ek0_A          113 LVGNKIDXLQE  123 (170)
T ss_dssp             EEEECGGGGGS
T ss_pred             EEEECCCcccc
Confidence            8888 999843

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.86  E-value=1.3e-08  Score=86.57  Aligned_cols=71  Identities=11%  Similarity=0.140  Sum_probs=53.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+++....+..+..... .+       .|++
T Consensus        60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~p~i  121 (181)
T 2efe_B           60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ----------ASFERAKKWVQELQAQGN-PN-------MVMA  121 (181)
T ss_dssp             EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHSC-TT-------CEEE
T ss_pred             EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcC-CC-------CcEE
Confidence            45789999999999999999999999999999999862          334455555555544211 12       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       122 ~v~nK~Dl~~  131 (181)
T 2efe_B          122 LAGNKSDLLD  131 (181)
T ss_dssp             EEEECTTCTT
T ss_pred             EEEECCcccc
Confidence            8888 99974

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.85  E-value=1.1e-09  Score=98.61  Aligned_cols=64  Identities=13%  Similarity=0.074  Sum_probs=44.0

Q ss_pred             ecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH---HHHhcCcc-ccCccccCCceeEEEEe
Q 019426          227 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF---DWVLKQPC-FEVFFCATSALHITAFV  302 (341)
Q Consensus       227 DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF---~~i~n~~~-f~~~~~~~~~~~iilf~  302 (341)
                      |+|||.+.|..|.|||+++++||||||++|          ..|++ +++.+   ..+++.+. +++       +|++||+
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD----------~~R~e-ak~EL~eL~~mL~ee~~L~g-------apLLVlA  169 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSG-------RPLLVLS  169 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBT----------TCCCC-HHHHHHHHHHHSCTTSSCSC-------SCEEEEE
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEecccc----------HhHHH-HHHHHHHHHHHhcchhhhCC-------CeEEEEe
Confidence            689999999999999999999999999997          34554 88887   55677654 566       8999999


Q ss_pred             cc--CccC
Q 019426          303 AC--EHVS  308 (341)
Q Consensus       303 n~--d~~~  308 (341)
                      |+  |...
T Consensus       170 NKqqDlp~  177 (227)
T 3l82_B          170 CISQGDVK  177 (227)
T ss_dssp             EESSTTSC
T ss_pred             CCCcCccC
Confidence            83  5653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.84  E-value=5.8e-09  Score=90.72  Aligned_cols=71  Identities=13%  Similarity=0.116  Sum_probs=53.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++.          ..+......+..+.......+       .|++|
T Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piil  124 (206)
T 2bov_A           62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDEN-------VPFLL  124 (206)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSC-------CCEEE
T ss_pred             EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            5789999999998899999999999999999999973          345555555555544322223       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       125 v~nK~Dl~~  133 (206)
T 2bov_A          125 VGNKSDLED  133 (206)
T ss_dssp             EEECTTCGG
T ss_pred             EEeccCccc
Confidence            888 99974

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.83  E-value=4.2e-09  Score=92.27  Aligned_cols=70  Identities=9%  Similarity=0.062  Sum_probs=51.0

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+..... .+       .|++|
T Consensus        74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~piil  135 (200)
T 2o52_A           74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNSLAAWLTDARTLAS-PN-------IVVIL  135 (200)
T ss_dssp             EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHTC-TT-------CEEEE
T ss_pred             eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcC-CC-------CcEEE
Confidence            5789999999988889999999999999999999973          233333333344332111 22       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       136 v~nK~Dl~~  144 (200)
T 2o52_A          136 CGNKKDLDP  144 (200)
T ss_dssp             EEECGGGGG
T ss_pred             EEECCCccc
Confidence            888 99873

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.82  E-value=9.8e-09  Score=90.34  Aligned_cols=76  Identities=14%  Similarity=0.166  Sum_probs=55.6

Q ss_pred             CceeEEEecCCcccccc-ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          220 GEVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~-kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      +..+.+||++|+...+. .|..++.+++++|||+|++++.         ..+.+....+..++.......     .-.|+
T Consensus        53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~-----~~~pi  118 (214)
T 2fh5_B           53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ---------REVKDVAEFLYQVLIDSMALK-----NSPSL  118 (214)
T ss_dssp             CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHHHHHTST-----TCCEE
T ss_pred             ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC---------HHHHHHHHHHHHHHhhhhhcc-----cCCCE
Confidence            57899999999988777 7888999999999999998641         235556666666554322111     12688


Q ss_pred             EEEec-cCccCc
Q 019426          299 TAFVA-CEHVSG  309 (341)
Q Consensus       299 ilf~n-~d~~~~  309 (341)
                      +|++| +|+...
T Consensus       119 ilv~nK~Dl~~~  130 (214)
T 2fh5_B          119 LIACNKQDIAMA  130 (214)
T ss_dssp             EEEEECTTSTTC
T ss_pred             EEEEECCCCCCc
Confidence            99898 999854

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.82  E-value=1e-08  Score=87.65  Aligned_cols=71  Identities=11%  Similarity=0.115  Sum_probs=50.6

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++          ...+.+....+..+.......+       .|+++
T Consensus        52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~p~i~  114 (189)
T 4dsu_A           52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHHYREQIKRVKDSED-------VPMVL  114 (189)
T ss_dssp             EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTCSC-------CCEEE
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CcEEE
Confidence            457889999999999999999999999999999997          2344454555555544222223       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       115 v~nK~Dl~~  123 (189)
T 4dsu_A          115 VGNKCDLPS  123 (189)
T ss_dssp             EEECTTSSS
T ss_pred             EEECccCcc
Confidence            888 99973

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.81  E-value=2.3e-08  Score=83.71  Aligned_cols=71  Identities=13%  Similarity=0.144  Sum_probs=51.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....++.+... ...+       .|++
T Consensus        54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~-------~~ii  115 (170)
T 1z0j_A           54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE----------ETFSTLKNWVRELRQH-GPPS-------IVVA  115 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-SCTT-------SEEE
T ss_pred             EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-CCCC-------CcEE
Confidence            46789999999998899999999999999999999872          2333333333444321 1112       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       116 lv~nK~Dl~~  125 (170)
T 1z0j_A          116 IAGNKCDLTD  125 (170)
T ss_dssp             EEEECTTCGG
T ss_pred             EEEECCcccc
Confidence            8888 99974

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.81  E-value=1.8e-08  Score=84.31  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=53.7

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      .+..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.... ..+       .|+
T Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~~i  114 (170)
T 1r2q_A           53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE----------ESFARAKNWVKELQRQA-SPN-------IVI  114 (170)
T ss_dssp             EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEE
T ss_pred             EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CcE
Confidence            356789999999999999999999999999999999872          33444444445554321 122       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      ++++| +|+..
T Consensus       115 ilv~nK~Dl~~  125 (170)
T 1r2q_A          115 ALSGNKADLAN  125 (170)
T ss_dssp             EEEEECGGGGG
T ss_pred             EEEEECccCcc
Confidence            88888 99873

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.81  E-value=2.4e-08  Score=85.11  Aligned_cols=70  Identities=11%  Similarity=-0.013  Sum_probs=51.9

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++-          ..++.....+..+.....-.+       .|++|
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~il  116 (181)
T 3t5g_A           54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI----------KSFEVIKVIHGKLLDMVGKVQ-------IPIML  116 (181)
T ss_dssp             EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHC-----------CCEEE
T ss_pred             EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            5689999999998899999999999999999999972          344555555555544322223       68888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       117 v~nK~Dl~  124 (181)
T 3t5g_A          117 VGNKKDLH  124 (181)
T ss_dssp             EEECTTCT
T ss_pred             EEECccch
Confidence            888 9986

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.81  E-value=1.6e-08  Score=96.54  Aligned_cols=86  Identities=21%  Similarity=0.356  Sum_probs=65.6

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|+....+      ...+..+.+||++||...+..|..++.+++++|||+|+++          ...+.+....+..+
T Consensus       195 pT~~~~~~~~------~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~----------~~s~~~~~~~~~~~  258 (329)
T 3o47_A          195 PTIGFNVETV------EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRM  258 (329)
T ss_dssp             EETTEEEEEE------EETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTC----------SSSHHHHHHHHHHH
T ss_pred             cccceEEEEE------ecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCc----------hHHHHHHHHHHHHH
Confidence            3556665556      5667889999999999999999999999999999999997          35677778888888


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccCc
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      +......+       .|++|++| +|+...
T Consensus       259 ~~~~~~~~-------~piilV~NK~Dl~~~  281 (329)
T 3o47_A          259 LAEDELRD-------AVLLVFANKQDLPNA  281 (329)
T ss_dssp             HTCGGGTT-------CEEEEEEECTTSTTC
T ss_pred             HhhhccCC-------CeEEEEEECccCCcc
Confidence            88765555       79999998 998743

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.79  E-value=2e-08  Score=86.59  Aligned_cols=71  Identities=13%  Similarity=0.213  Sum_probs=51.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.... -.+       .|++|
T Consensus        65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~p~il  126 (196)
T 3tkl_A           65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEIDRYA-SEN-------VNKLL  126 (196)
T ss_dssp             EEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred             EEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence            5789999999999999999999999999999999972          23333333333332211 112       68888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|+...
T Consensus       127 v~nK~Dl~~~  136 (196)
T 3tkl_A          127 VGNKCDLTTK  136 (196)
T ss_dssp             EEECTTCTTT
T ss_pred             EEECcccccc
Confidence            888 998743

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.78  E-value=1.7e-08  Score=85.25  Aligned_cols=71  Identities=10%  Similarity=0.064  Sum_probs=50.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+..... .+       .|++
T Consensus        63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~pii  124 (179)
T 1z0f_A           63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLTN-PN-------TVII  124 (179)
T ss_dssp             EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSC-TT-------CEEE
T ss_pred             EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCH----------HHHHHHHHHHHHHHHhcC-CC-------CcEE
Confidence            45789999999998899999999999999999999873          222222223233322110 12       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       125 lv~nK~Dl~~  134 (179)
T 1z0f_A          125 LIGNKADLEA  134 (179)
T ss_dssp             EEEECTTCGG
T ss_pred             EEEECccccc
Confidence            8888 99973

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.77  E-value=3.4e-08  Score=86.29  Aligned_cols=71  Identities=11%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+.... ..+       .|++
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~pii  117 (206)
T 2bcg_Y           56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ----------ESFNGVKMWLQEIDRYA-TST-------VLKL  117 (206)
T ss_dssp             EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEEE
T ss_pred             EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEE
Confidence            35789999999999999999999999999999999973          23333333334332211 112       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       118 lv~nK~Dl~~  127 (206)
T 2bcg_Y          118 LVGNKCDLKD  127 (206)
T ss_dssp             EEEECTTCTT
T ss_pred             EEEECCCCcc
Confidence            8888 99974

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.77  E-value=3.6e-08  Score=84.99  Aligned_cols=72  Identities=10%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+...+..|..++.+++++|||+|+++-          ..+......+..+... ...+       .|+
T Consensus        69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~-------~pi  130 (189)
T 2gf9_A           69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQ----------ESFAAVQDWATQIKTY-SWDN-------AQV  130 (189)
T ss_dssp             EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTT-------CEE
T ss_pred             eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cCCC-------CCE
Confidence            346789999999999999999999999999999999862          2233333333333221 1122       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|++| +|+..
T Consensus       131 ilv~nK~Dl~~  141 (189)
T 2gf9_A          131 ILVGNKCDLED  141 (189)
T ss_dssp             EEEEECTTCGG
T ss_pred             EEEEECccccc
Confidence            88888 99974

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.77  E-value=2.6e-08  Score=85.14  Aligned_cols=71  Identities=10%  Similarity=0.109  Sum_probs=54.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....++.+.......+       .|+++
T Consensus        70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~piil  132 (195)
T 3bc1_A           70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNE----------QSFLNVRNWISQLQMHAYSEN-------PDIVL  132 (195)
T ss_dssp             EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSSSSS-------CCEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            5789999999998999999999999999999999872          344444555555554332233       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       133 v~nK~Dl~~  141 (195)
T 3bc1_A          133 CGNKSDLED  141 (195)
T ss_dssp             EEECTTCGG
T ss_pred             EEECccccc
Confidence            888 99974

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.77  E-value=3.5e-08  Score=84.91  Aligned_cols=71  Identities=8%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++-          ..+.+....+..+.......+       .|+++
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~p~il  131 (190)
T 3con_A           69 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS----------KSFADINLYREQIKRVKDSDD-------VPMVL  131 (190)
T ss_dssp             EEEEEEECCC-----------CTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSC-------CCEEE
T ss_pred             EEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhCCCC-------CeEEE
Confidence            5689999999988889999999999999999999873          233333333333322111122       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       132 v~nK~Dl~~  140 (190)
T 3con_A          132 VGNKCDLPT  140 (190)
T ss_dssp             EEECTTCSC
T ss_pred             EEECCcCCc
Confidence            888 99874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.75  E-value=4.1e-08  Score=83.04  Aligned_cols=73  Identities=11%  Similarity=0.158  Sum_probs=51.4

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-..       ...+..-+..+...+......+       .|+++
T Consensus        56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~-------~p~i~  121 (177)
T 1wms_A           56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS-------FQNLSNWKKEFIYYADVKEPES-------FPFVI  121 (177)
T ss_dssp             EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHTCSCTTT-------SCEEE
T ss_pred             EEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH-------HHHHHHHHHHHHHHccccccCC-------CcEEE
Confidence            578999999999999999999999999999999987311       1222223333333333222233       68888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       122 v~nK~Dl~  129 (177)
T 1wms_A          122 LGNKIDIS  129 (177)
T ss_dssp             EEECTTCS
T ss_pred             EEECCccc
Confidence            888 9987

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.75  E-value=2.6e-08  Score=82.58  Aligned_cols=72  Identities=7%  Similarity=0.052  Sum_probs=52.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++-          ..+.+....+..+.......+       .|++
T Consensus        50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~-------~p~i  112 (166)
T 2ce2_X           50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT----------KSFEDIHQYREQIKRVKDSDD-------VPMV  112 (166)
T ss_dssp             EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSC-------CCEE
T ss_pred             EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CcEE
Confidence            35688999999988888999999999999999999862          334444444444433221123       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       113 iv~nK~Dl~~  122 (166)
T 2ce2_X          113 LVGNKSDLAA  122 (166)
T ss_dssp             EEEECTTCSC
T ss_pred             EEEEchhhhh
Confidence            8888 99874

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.75  E-value=5.9e-08  Score=84.46  Aligned_cols=74  Identities=8%  Similarity=0.084  Sum_probs=51.0

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-+.       ...+..-+..+..........+       .|++
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~-------~pii  121 (207)
T 1vg8_A           56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT-------FKTLDSWRDEFLIQASPRDPEN-------FPFV  121 (207)
T ss_dssp             EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHCCSSGGG-------SCEE
T ss_pred             EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH-------HHHHHHHHHHHHHhcccccCCC-------CcEE
Confidence            3578999999999899999999999999999999987311       1122222233333332222223       6888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |++| +|+.
T Consensus       122 lv~nK~Dl~  130 (207)
T 1vg8_A          122 VLGNKIDLE  130 (207)
T ss_dssp             EEEECTTSS
T ss_pred             EEEECCCCc
Confidence            8888 9997

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.74  E-value=2e-08  Score=87.30  Aligned_cols=71  Identities=8%  Similarity=0.001  Sum_probs=52.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+.. +..|..++.+++++|||+|+++.          ..+.+....+..+.......+       .|++
T Consensus        75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii  136 (196)
T 2atv_A           75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDR----------GSFEEVLPLKNILDEIKKPKN-------VTLI  136 (196)
T ss_dssp             EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTTSC-------CCEE
T ss_pred             EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhhCCCC-------CcEE
Confidence            45789999999987 88899999999999999999973          344444444444443222223       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       137 lv~NK~Dl~~  146 (196)
T 2atv_A          137 LVGNKADLDH  146 (196)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEECccccc
Confidence            8888 99974

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.74  E-value=9.1e-09  Score=89.45  Aligned_cols=71  Identities=14%  Similarity=0.141  Sum_probs=50.4

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc--ccCccccCCceeE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC--FEVFFCATSALHI  298 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~--f~~~~~~~~~~~i  298 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.....  ..+       .|+
T Consensus        73 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~-------~pi  135 (208)
T 2yc2_C           73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSM----------ESFESCKAWFELLKSARPDRERP-------LRA  135 (208)
T ss_dssp             EEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCH----------HHHHHHHHHHHHHHHHCSCTTSC-------CEE
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhhcccccC-------CcE
Confidence            4689999999998889999999999999999999862          344555555555544221  123       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|++| +|+..
T Consensus       136 ilv~nK~Dl~~  146 (208)
T 2yc2_C          136 VLVANKTDLPP  146 (208)
T ss_dssp             EEEEECC----
T ss_pred             EEEEECcccch
Confidence            88888 99984

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.74  E-value=4.3e-08  Score=82.24  Aligned_cols=70  Identities=10%  Similarity=0.060  Sum_probs=43.6

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....++.+... .-.+       .|+++
T Consensus        55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~piil  116 (170)
T 1z08_A           55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE----------DSFQKVKNWVKELRKM-LGNE-------ICLCI  116 (170)
T ss_dssp             EEEEEEECCCC-------CCSSTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-HGGG-------SEEEE
T ss_pred             EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCC-------CeEEE
Confidence            5789999999998899999999999999999999873          2233333333332221 1112       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       117 v~nK~Dl~~  125 (170)
T 1z08_A          117 VGNKIDLEK  125 (170)
T ss_dssp             EEECGGGGG
T ss_pred             EEECccccc
Confidence            888 99974

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.74  E-value=3.8e-08  Score=85.67  Aligned_cols=71  Identities=10%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+......+..+.... ..+       .|++
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~pii  117 (203)
T 1zbd_A           56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWSTQIKTYS-WDN-------AQVL  117 (203)
T ss_dssp             EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CSS-------CEEE
T ss_pred             EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEE
Confidence            46789999999998899999999999999999999872          33444444444443211 123       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       118 lv~nK~Dl~~  127 (203)
T 1zbd_A          118 LVGNKCDMED  127 (203)
T ss_dssp             EEEECTTCTT
T ss_pred             EEEECcccCc
Confidence            8888 99974

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.73  E-value=7e-08  Score=81.60  Aligned_cols=69  Identities=12%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+...  ..+       .|++|
T Consensus        58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~-------~p~il  118 (181)
T 3tw8_B           58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA----------ESFVNVKRWLHEINQN--CDD-------VCRIL  118 (181)
T ss_dssp             EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH--CTT-------SEEEE
T ss_pred             EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCC-------CCEEE
Confidence            6789999999999999999999999999999999972          3344444444444321  122       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       119 v~nK~Dl~~  127 (181)
T 3tw8_B          119 VGNKNDDPE  127 (181)
T ss_dssp             EEECTTCGG
T ss_pred             EEECCCCch
Confidence            888 99873

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.73  E-value=6.1e-08  Score=83.88  Aligned_cols=71  Identities=13%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++-          ..+.+....|...+.. ...+       .|++
T Consensus        70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~p~i  131 (194)
T 3reg_A           70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR----------TSFDNISTKWEPEIKH-YIDT-------AKTV  131 (194)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCTT-------SEEE
T ss_pred             EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEE
Confidence            35679999999999999999999999999999999972          3444443434333331 1223       7889


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       132 lv~nK~Dl~~  141 (194)
T 3reg_A          132 LVGLKVDLRK  141 (194)
T ss_dssp             EEEECGGGCC
T ss_pred             EEEEChhhcc
Confidence            8888 99873

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.71  E-value=3.7e-08  Score=83.35  Aligned_cols=71  Identities=14%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|+|+|+++.          ..+.+....+..++......+       .|++|
T Consensus        57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~piil  119 (181)
T 2fn4_A           57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR----------QSFNEVGKLFTQILRVKDRDD-------FPVVL  119 (181)
T ss_dssp             EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTSSC-------CCEEE
T ss_pred             EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            5688999999998889999999999999999999973          345555555555544322223       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       120 v~nK~Dl~~  128 (181)
T 2fn4_A          120 VGNKADLES  128 (181)
T ss_dssp             EEECGGGGG
T ss_pred             EEECccccc
Confidence            888 99974

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.71  E-value=5.2e-08  Score=84.68  Aligned_cols=69  Identities=10%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH-HHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +.+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+... .+..+...  ..+       .|++
T Consensus        68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~-------~p~i  128 (201)
T 2q3h_A           68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP----------SSFQNVSEKWVPEIRCH--CPK-------APII  128 (201)
T ss_dssp             EEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--CSS-------SCEE
T ss_pred             EEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCC-------CCEE
Confidence            4678999999998899999999999999999999872          34444442 32333221  113       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       129 lv~nK~Dl~~  138 (201)
T 2q3h_A          129 LVGTQSDLRE  138 (201)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEECHhhhh
Confidence            8888 99984

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.70  E-value=3.8e-08  Score=83.78  Aligned_cols=70  Identities=11%  Similarity=0.108  Sum_probs=50.6

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH-HHHHHhcCccccCccccCCceeE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+... .+..+...  ..+       .|+
T Consensus        52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~-------~pi  112 (186)
T 1mh1_A           52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP----------ASFENVRAKWYPEVRHH--CPN-------TPI  112 (186)
T ss_dssp             EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--STT-------SCE
T ss_pred             EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHHHHh--CCC-------CCE
Confidence            35678999999998899999999999999999999872          33444432 22222221  113       688


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      ++++| +|+..
T Consensus       113 ilv~nK~Dl~~  123 (186)
T 1mh1_A          113 ILVGTKLDLRD  123 (186)
T ss_dssp             EEEEECHHHHT
T ss_pred             EEEeEcccccc
Confidence            88888 99874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.70  E-value=1.5e-08  Score=87.59  Aligned_cols=73  Identities=11%  Similarity=0.194  Sum_probs=52.3

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      .....+.+||++|+...+..|..++.+++++|||+|+++-          ..++.....++.+.. ....+       .|
T Consensus        69 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~-~~~~~-------~p  130 (191)
T 3dz8_A           69 EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWATQIKT-YSWDN-------AQ  130 (191)
T ss_dssp             TTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHH-HSCTT-------CE
T ss_pred             CEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCH----------HHHHHHHHHHHHHHH-hcCCC-------CC
Confidence            4457899999999999999999999999999999999862          223333333333322 11123       78


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      ++|++| +|+..
T Consensus       131 iilv~nK~Dl~~  142 (191)
T 3dz8_A          131 VILVGNKCDMEE  142 (191)
T ss_dssp             EEEEEECTTCGG
T ss_pred             EEEEEECCCCcc
Confidence            888888 99863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.68  E-value=3.1e-08  Score=82.95  Aligned_cols=72  Identities=14%  Similarity=0.126  Sum_probs=50.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc-cccCccccCCceeE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEVFFCATSALHI  298 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~-~f~~~~~~~~~~~i  298 (341)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++-          ..+++....+..+.... ...+       .|+
T Consensus        50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-------~pi  112 (172)
T 2erx_A           50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR----------QSLEELKPIYEQICEIKGDVES-------IPI  112 (172)
T ss_dssp             EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHC---C-------CCE
T ss_pred             EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhCCCCC-------CCE
Confidence            35689999999998889999999999999999999962          22333333333333211 1123       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      ++++| +|+..
T Consensus       113 i~v~nK~Dl~~  123 (172)
T 2erx_A          113 MLVGNKCDESP  123 (172)
T ss_dssp             EEEEECGGGGG
T ss_pred             EEEEEcccccc
Confidence            88888 99874

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.68  E-value=1.1e-07  Score=81.63  Aligned_cols=71  Identities=11%  Similarity=0.094  Sum_probs=50.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....|...+.. ...+       .|++
T Consensus        54 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~i~~-~~~~-------~pii  115 (184)
T 1m7b_A           54 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------ETLDSVLKKWKGEIQE-FCPN-------TKML  115 (184)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCTT-------CEEE
T ss_pred             EEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHH-HCCC-------CCEE
Confidence            45789999999988888999999999999999999862          3344432223222211 1122       7889


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       116 lv~nK~Dl~~  125 (184)
T 1m7b_A          116 LVGCKSDLRT  125 (184)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEEcchhhc
Confidence            8888 99973

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.68  E-value=7.7e-08  Score=81.40  Aligned_cols=69  Identities=13%  Similarity=0.076  Sum_probs=52.5

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      +.+..+.+||++|+...+..|..++.+++++|||+|+++-           ...++++.+..+..    .+       .|
T Consensus        52 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-----------~~~~~~~~l~~~~~----~~-------~p  109 (178)
T 2lkc_A           52 VNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG-----------VMPQTVEAINHAKA----AN-------VP  109 (178)
T ss_dssp             ETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC-----------CCHHHHHHHHHHGG----GS-------CC
T ss_pred             eCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHh----CC-------CC
Confidence            3456788999999999999999999999999999998762           24455555554432    12       68


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++.+| +|+..
T Consensus       110 ~ilv~nK~Dl~~  121 (178)
T 2lkc_A          110 IIVAINKMDKPE  121 (178)
T ss_dssp             EEEEEETTTSSC
T ss_pred             EEEEEECccCCc
Confidence            888888 99984

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.68  E-value=5e-08  Score=81.64  Aligned_cols=69  Identities=14%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+.... -.+       .|+++
T Consensus        52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil  113 (170)
T 1g16_A           52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------RTFTNIKQWFKTVNEHA-NDE-------AQLLL  113 (170)
T ss_dssp             EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred             EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CcEEE
Confidence            5689999999998899999999999999999999873          22323233333332211 012       68888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      ++| +|+.
T Consensus       114 v~nK~Dl~  121 (170)
T 1g16_A          114 VGNKSDME  121 (170)
T ss_dssp             EEECTTCT
T ss_pred             EEECccCC
Confidence            888 9984

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.67  E-value=3.4e-08  Score=85.28  Aligned_cols=72  Identities=10%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc-cccCccccCCceeE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEVFFCATSALHI  298 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~-~f~~~~~~~~~~~i  298 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.... ...+       .|+
T Consensus        55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~-------~pi  117 (199)
T 2gf0_A           55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSK----------QSLEELGPIYKLIVQIKGSVED-------IPV  117 (199)
T ss_dssp             EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHSCGGG-------SCE
T ss_pred             EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhcCCCC-------CCE
Confidence            45789999999988888999999999999999999873          22332223332222211 1123       688


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       118 ilv~nK~Dl~~  128 (199)
T 2gf0_A          118 MLVGNKCDETQ  128 (199)
T ss_dssp             EEEEECTTCSS
T ss_pred             EEEEECccCCc
Confidence            88888 99873

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.66  E-value=1.2e-07  Score=84.13  Aligned_cols=71  Identities=11%  Similarity=0.095  Sum_probs=53.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++          ...+.+++..|-..+... ..+       .|++
T Consensus        74 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~-~~~-------~pii  135 (214)
T 3q3j_B           74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR----------PETVDSALKKWRTEILDY-CPS-------TRVL  135 (214)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------THHHHHHHTHHHHHHHHH-CTT-------SEEE
T ss_pred             EEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC----------HHHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence            4678999999999999999999999999999999997          244555444443333221 123       7899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       136 lv~nK~Dl~~  145 (214)
T 3q3j_B          136 LIGCKTDLRT  145 (214)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEEChhhcc
Confidence            9998 99974

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.65  E-value=6.7e-08  Score=83.26  Aligned_cols=71  Identities=17%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             ceeEEEecCCccccc-cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR-~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ..+.+||++|+...+ ..|..++.+++++|||+|+++.          ..+......++.+.......+       .|++
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii  131 (189)
T 1z06_A           69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNM----------ASFHSLPAWIEECKQHLLAND-------IPRI  131 (189)
T ss_dssp             EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHCCCSC-------CCEE
T ss_pred             EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence            578999999998777 7899999999999999999973          223333333344433211122       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       132 lv~nK~Dl~~  141 (189)
T 1z06_A          132 LVGNKCDLRS  141 (189)
T ss_dssp             EEEECTTCGG
T ss_pred             EEEECccccc
Confidence            8888 99974

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.65  E-value=9.1e-08  Score=83.98  Aligned_cols=71  Identities=14%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....|...+.. ...+       .|+++
T Consensus        73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~piil  134 (207)
T 2fv8_A           73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSP----------DSLENIPEKWVPEVKH-FCPN-------VPIIL  134 (207)
T ss_dssp             EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HSTT-------CCEEE
T ss_pred             EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEEE
Confidence            5789999999998899999999999999999999872          3344432222222221 1123       78888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|+...
T Consensus       135 v~nK~Dl~~~  144 (207)
T 2fv8_A          135 VANKKDLRSD  144 (207)
T ss_dssp             EEECGGGGGC
T ss_pred             EEEchhhhcc
Confidence            888 999843

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.65  E-value=1.3e-07  Score=81.96  Aligned_cols=72  Identities=13%  Similarity=0.170  Sum_probs=52.2

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+...+..|..++.+++++|||+|+++-          ..+......+..+.... ..+       .|+
T Consensus        70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~pi  131 (192)
T 2fg5_A           70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQ----------DSFYTLKKWVKELKEHG-PEN-------IVM  131 (192)
T ss_dssp             SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCT----------HHHHHHHHHHHHHHHHS-CTT-------CEE
T ss_pred             EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCC-------CcE
Confidence            446789999999998999999999999999999999872          23333333334333211 122       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|++| +|+..
T Consensus       132 iiv~NK~Dl~~  142 (192)
T 2fg5_A          132 AIAGNKCDLSD  142 (192)
T ss_dssp             EEEEECGGGGG
T ss_pred             EEEEECccccc
Confidence            88888 99973

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.65  E-value=1e-07  Score=83.20  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....|...+.. ...+       .|++
T Consensus        72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~pii  133 (201)
T 2gco_A           72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKH-FCPN-------VPII  133 (201)
T ss_dssp             EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HSTT-------CCEE
T ss_pred             EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEE
Confidence            35789999999998999999999999999999999862          3344442333333221 1123       7888


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |++| +|++..
T Consensus       134 lv~nK~Dl~~~  144 (201)
T 2gco_A          134 LVGNKKDLRQD  144 (201)
T ss_dssp             EEEECGGGTTC
T ss_pred             EEEecHHhhcC
Confidence            8888 999854

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.64  E-value=2.7e-08  Score=87.71  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=53.6

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++          ...+.+....+..+.......+       .|++
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~----------~~s~~~~~~~l~~i~~~~~~~~-------~pii  145 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS----------QQSFLNVRNWMSQLQANAYCEN-------PDIV  145 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTC----------HHHHHHHHHHHHTCCCCCTTTC-------CEEE
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCcCC-------CCEE
Confidence            3578999999999889999999999999999999987          2334444444444444322233       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       146 lV~NK~Dl~~  155 (217)
T 2f7s_A          146 LIGNKADLPD  155 (217)
T ss_dssp             EEEECTTCGG
T ss_pred             EEEECCcccc
Confidence            8888 99974

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.64  E-value=8.3e-08  Score=82.94  Aligned_cols=70  Identities=11%  Similarity=0.136  Sum_probs=51.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+++....+..+.... ..+       .|++|
T Consensus        70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~l~~i~~~~-~~~-------~piil  131 (191)
T 2a5j_A           70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLTSWLEDARQHS-SSN-------MVIML  131 (191)
T ss_dssp             EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred             EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence            5789999999999999999999999999999999872          23344344444443311 112       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       132 v~nK~Dl~~  140 (191)
T 2a5j_A          132 IGNKSDLES  140 (191)
T ss_dssp             EEECTTCGG
T ss_pred             EEECcccCC
Confidence            888 99974

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.64  E-value=3.9e-08  Score=85.36  Aligned_cols=70  Identities=9%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+++....++.+ ......+       .|++|
T Consensus        75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~----------~s~~~~~~~~~~i-~~~~~~~-------~piil  136 (192)
T 2il1_A           75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----------ETFDDLPKWMKMI-DKYASED-------AELLL  136 (192)
T ss_dssp             EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHH-HHHSCTT-------CEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHH-HHhcCCC-------CcEEE
Confidence            5789999999998889999999999999999999873          2222222222222 2111123       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       137 V~NK~Dl~~  145 (192)
T 2il1_A          137 VGNKLDCET  145 (192)
T ss_dssp             EEECGGGGG
T ss_pred             EEECccccc
Confidence            888 99874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.64  E-value=1.1e-07  Score=79.25  Aligned_cols=76  Identities=21%  Similarity=0.398  Sum_probs=64.1

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+..+.+||++|+...+..|..++.+++++|||+|+++          ...+.+....+..++......+       .
T Consensus        40 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  102 (164)
T 1r8s_A           40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDELRD-------A  102 (164)
T ss_dssp             ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------C
T ss_pred             EECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHHHhchhhcC-------C
Confidence            4567899999999999889999999999999999999987          3567777788888887665555       7


Q ss_pred             eEEEEec-cCccCc
Q 019426          297 HITAFVA-CEHVSG  309 (341)
Q Consensus       297 ~iilf~n-~d~~~~  309 (341)
                      |++|++| +|+...
T Consensus       103 piilv~nK~Dl~~~  116 (164)
T 1r8s_A          103 VLLVFANKQDLPNA  116 (164)
T ss_dssp             EEEEEEECTTSTTC
T ss_pred             eEEEEEECcCCcCC
Confidence            8999998 999743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.62  E-value=1.1e-07  Score=82.07  Aligned_cols=72  Identities=6%  Similarity=0.101  Sum_probs=53.8

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+..... .+       .|+
T Consensus        72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~s~~~~~~~l~~i~~~~~-~~-------~pi  133 (193)
T 2oil_A           72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKH----------QTYAVVERWLKELYDHAE-AT-------IVV  133 (193)
T ss_dssp             EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHTTSC-TT-------CEE
T ss_pred             EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcC-CC-------CeE
Confidence            346789999999998899999999999999999999872          334444455555544321 22       688


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|++| +|+..
T Consensus       134 ilv~nK~Dl~~  144 (193)
T 2oil_A          134 MLVGNKSDLSQ  144 (193)
T ss_dssp             EEEEECGGGGG
T ss_pred             EEEEECCCccc
Confidence            88888 99974

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.62  E-value=1.3e-07  Score=82.99  Aligned_cols=71  Identities=10%  Similarity=0.129  Sum_probs=51.7

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....|...+.... .+       .|++|
T Consensus        78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~-------~piil  139 (204)
T 4gzl_A           78 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFENVRAKWYPEVRHHC-PN-------TPIIL  139 (204)
T ss_dssp             EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHHC-SS-------CCEEE
T ss_pred             EEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhC-CC-------CCEEE
Confidence            4577999999999999999999999999999999972          344444433333332211 23       78888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|+...
T Consensus       140 v~nK~Dl~~~  149 (204)
T 4gzl_A          140 VGTKLDLRDD  149 (204)
T ss_dssp             EEECHHHHTC
T ss_pred             EEechhhccc
Confidence            888 998743

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.62  E-value=6.6e-09  Score=97.62  Aligned_cols=65  Identities=12%  Similarity=0.092  Sum_probs=49.5

Q ss_pred             ecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH---HHhcCcc-ccCccccCCceeEEEEe
Q 019426          227 DVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD---WVLKQPC-FEVFFCATSALHITAFV  302 (341)
Q Consensus       227 DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~---~i~n~~~-f~~~~~~~~~~~iilf~  302 (341)
                      |+|||.+.|..|.|||+++++||||||++|          ..|++ +.+.|+   .+++.+. +++       +|++||+
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsD----------reRle-ak~EL~eL~~mL~e~~~l~~-------apLLVfA  254 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEA----------HKRHE-WQDEFSHIMAMTDPAFGSSG-------RPLLVLS  254 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBT----------TCCCC-HHHHHHHHHHHHCHHHHCTT-------CCEEEEE
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCc----------HhHHH-HHHHHHHHHHHhcchhhcCC-------CeEEEEe
Confidence            589999999999999999999999999998          45665 676665   5676654 567       8999999


Q ss_pred             c-c-CccCc
Q 019426          303 A-C-EHVSG  309 (341)
Q Consensus       303 n-~-d~~~~  309 (341)
                      | . |+...
T Consensus       255 NKkQDlp~A  263 (312)
T 3l2o_B          255 CISQGDVKR  263 (312)
T ss_dssp             EESSTTSCB
T ss_pred             CCcccccCC
Confidence            8 3 67533

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.60  E-value=1.7e-07  Score=81.93  Aligned_cols=69  Identities=14%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....+..+.... -.+       .|++|
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil  130 (213)
T 3cph_A           69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDE----------RTFTNIKQWFKTVNEHA-NDE-------AQLLL  130 (213)
T ss_dssp             EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHT-TTC-------SEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence            5789999999998899999999999999999999873          22333233333333211 112       68888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      ++| +|+.
T Consensus       131 v~nK~Dl~  138 (213)
T 3cph_A          131 VGNKSDME  138 (213)
T ss_dssp             EEECTTCS
T ss_pred             EEECCCCc
Confidence            888 9984

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.59  E-value=7.2e-08  Score=84.01  Aligned_cols=70  Identities=13%  Similarity=0.221  Sum_probs=49.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.... -.+       .|++|
T Consensus        82 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~p~il  143 (199)
T 3l0i_B           82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEIDRYA-SEN-------VNKLL  143 (199)
T ss_dssp             EEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCS----------HHHHHHHHHHHHHHSCC--CC-------SEEEE
T ss_pred             EEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-cCC-------CCEEE
Confidence            5689999999999999999999999999999999972          44555555555553321 123       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       144 v~nK~Dl~~  152 (199)
T 3l0i_B          144 VGNKCDLTT  152 (199)
T ss_dssp             C-CCSSCC-
T ss_pred             EEECccCCc
Confidence            888 99873

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.58  E-value=2.9e-07  Score=81.18  Aligned_cols=71  Identities=11%  Similarity=0.094  Sum_probs=50.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....|-..+.. ...+       .|++
T Consensus        75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~~i~~-~~~~-------~pii  136 (205)
T 1gwn_A           75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------ETLDSVLKKWKGEIQE-FCPN-------TKML  136 (205)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCTT-------CEEE
T ss_pred             EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHH-HCCC-------CCEE
Confidence            46789999999988888999999999999999999862          3344432222222211 1122       7889


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       137 lv~nK~Dl~~  146 (205)
T 1gwn_A          137 LVGCKSDLRT  146 (205)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEechhhcc
Confidence            8888 99973

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.58  E-value=2.2e-07  Score=80.27  Aligned_cols=65  Identities=12%  Similarity=0.074  Sum_probs=49.0

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++|+...+     ++.+++++|+|+|+++          ...+++....+..+.......+       .|++|
T Consensus        67 ~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~piil  124 (184)
T 3ihw_A           67 YLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLED----------EISFQTVYNYFLRLCSFRNASE-------VPMVL  124 (184)
T ss_dssp             EEEEEEECSSSCCHH-----HHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHTTSCGGG-------SCEEE
T ss_pred             EEEEEEECCCChhhh-----eecCCCEEEEEEECcC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEEE
Confidence            567889999996655     7888999999999997          3456666666677765433233       78898


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       125 v~nK~Dl~  132 (184)
T 3ihw_A          125 VGTQDAIS  132 (184)
T ss_dssp             EEECTTCB
T ss_pred             EEECcccc
Confidence            888 9985

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.57  E-value=1.4e-07  Score=83.01  Aligned_cols=70  Identities=11%  Similarity=0.066  Sum_probs=49.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+......+..+.... -.+       .|++|
T Consensus        75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil  136 (201)
T 2ew1_A           75 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE----------ESFRCLPEWLREIEQYA-SNK-------VITVL  136 (201)
T ss_dssp             EEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence            5789999999998888999999999999999999873          22222222223322110 012       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       137 v~NK~Dl~~  145 (201)
T 2ew1_A          137 VGNKIDLAE  145 (201)
T ss_dssp             EEECGGGGG
T ss_pred             EEECCCCcc
Confidence            888 99973

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.56  E-value=2.6e-07  Score=79.65  Aligned_cols=92  Identities=22%  Similarity=0.346  Sum_probs=71.1

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|+....+      ...+..+.+||++|+...+..|..++.+++++|||+|+++          ...+.+....+..++
T Consensus        50 t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~----------~~s~~~~~~~~~~~~  113 (199)
T 4bas_A           50 TVGYNVETF------EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSD----------HLRLCVVKSEIQAML  113 (199)
T ss_dssp             CSSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHHH
T ss_pred             ccceeEEEE------EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCc----------HHHHHHHHHHHHHHH
Confidence            456555556      5667899999999999999999999999999999999997          356777778888888


Q ss_pred             cCccccCccccCCceeEEEEec-cCccCc
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      ....+.+...+-.-.|++|++| +|+...
T Consensus       114 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A          114 KHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             TSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             hChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            8755542111111278999998 999854

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.55  E-value=1.2e-07  Score=83.89  Aligned_cols=73  Identities=8%  Similarity=0.049  Sum_probs=52.7

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      ..+..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+...  ..+       .|
T Consensus        61 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~-------~p  121 (221)
T 3gj0_A           61 RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR----------VTYKNVPNWHRDLVRV--CEN-------IP  121 (221)
T ss_dssp             TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH--STT-------CC
T ss_pred             CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCC-------CC
Confidence            3456789999999999999999999999999999999972          2233333333333321  123       78


Q ss_pred             EEEEec-cCccCc
Q 019426          298 ITAFVA-CEHVSG  309 (341)
Q Consensus       298 iilf~n-~d~~~~  309 (341)
                      ++|++| +|+...
T Consensus       122 ~ilv~nK~Dl~~~  134 (221)
T 3gj0_A          122 IVLCGNKVDIKDR  134 (221)
T ss_dssp             EEEEEECTTSSSC
T ss_pred             EEEEEECCccccc
Confidence            898888 998743

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.55  E-value=1.1e-07  Score=83.98  Aligned_cols=71  Identities=11%  Similarity=0.156  Sum_probs=36.7

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+....|-..+.. ...+       .|++|
T Consensus        82 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~piil  143 (214)
T 2j1l_A           82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSP----------NSFDNIFNRWYPEVNH-FCKK-------VPIIV  143 (214)
T ss_dssp             EEEEEEEC---------------CEEEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCSS-------CCEEE
T ss_pred             EEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHH-hCCC-------CCEEE
Confidence            4689999999998899999999999999999999872          3344443222222221 1123       78888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|+...
T Consensus       144 v~nK~Dl~~~  153 (214)
T 2j1l_A          144 VGCKTDLRKD  153 (214)
T ss_dssp             EEECGGGGSC
T ss_pred             EEEChhhhcc
Confidence            888 999843

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.53  E-value=1.7e-07  Score=78.56  Aligned_cols=70  Identities=9%  Similarity=0.034  Sum_probs=46.2

Q ss_pred             ceeEEEecCCcccccc-ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~-kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ..+.+||++|+...+. .|..++.+++++|+|+|+++-          ..+.+....+..+.......+       .|++
T Consensus        51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~i  113 (169)
T 3q85_A           51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHD-------LPVI  113 (169)
T ss_dssp             EEEEEECCCCC--------CHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSC-------CCEE
T ss_pred             EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCCh----------HHHHHHHHHHHHHHhcccCCC-------CCEE
Confidence            4678999999977665 778889999999999999872          334444455555544322223       7889


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +.+| +|+.
T Consensus       114 lv~nK~Dl~  122 (169)
T 3q85_A          114 LVGNKSDLA  122 (169)
T ss_dssp             EEEECTTCG
T ss_pred             EEeeCcchh
Confidence            8888 9987

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.52  E-value=6.1e-07  Score=83.80  Aligned_cols=70  Identities=9%  Similarity=0.073  Sum_probs=49.9

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....|-..+... ..+       .|++|
T Consensus       203 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~p~il  264 (332)
T 2wkq_A          203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFHHVRAKWYPEVRHH-CPN-------TPIIL  264 (332)
T ss_dssp             EEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-CTT-------SCEEE
T ss_pred             EEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhh-CCC-------CcEEE
Confidence            4567999999999999999999999999999999872          33444432222222211 113       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       265 v~nK~Dl~~  273 (332)
T 2wkq_A          265 VGTKLDLRD  273 (332)
T ss_dssp             EEECHHHHT
T ss_pred             EEEchhccc
Confidence            888 99874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.51  E-value=2.6e-07  Score=79.37  Aligned_cols=75  Identities=17%  Similarity=0.312  Sum_probs=59.5

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||++|+...+..|..++.+++++|||+|+++          ...+.+....+..+.......+       .
T Consensus        56 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~  118 (187)
T 1zj6_A           56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHEDLRK-------A  118 (187)
T ss_dssp             EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTC----------TTTHHHHHHHHHHHHTSGGGTT-------C
T ss_pred             EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHhchhhCC-------C
Confidence            4567899999999999999999999999999999999997          3567788888888887654444       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++.+| +|+..
T Consensus       119 piilv~NK~Dl~~  131 (187)
T 1zj6_A          119 GLLIFANKQDVKE  131 (187)
T ss_dssp             EEEEEEECTTSTT
T ss_pred             eEEEEEECCCCcC
Confidence            8999998 99974

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.50  E-value=4.5e-07  Score=76.22  Aligned_cols=71  Identities=11%  Similarity=0.045  Sum_probs=45.4

Q ss_pred             ceeEEEecCCccc--cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          221 EVYRLFDVGGQRN--ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       221 ~~~~l~DvgGqr~--eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ..+.+||++|+..  .+..+..++.+++++|+|+|+++-          ..+......+..+.......+       .|+
T Consensus        52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~-------~pi  114 (175)
T 2nzj_A           52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADR----------GSFESASELRIQLRRTHQADH-------VPI  114 (175)
T ss_dssp             EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCH----------HHHHHHHHHHHHHHHCC-----------CCE
T ss_pred             EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhccCC-------CCE
Confidence            4688999999976  344456688999999999999972          345555555555554322223       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      ++.+| +|+..
T Consensus       115 ilv~NK~Dl~~  125 (175)
T 2nzj_A          115 ILVGNKADLAR  125 (175)
T ss_dssp             EEEEECTTCTT
T ss_pred             EEEEEChhhcc
Confidence            88888 99974

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.49  E-value=3.1e-07  Score=79.74  Aligned_cols=86  Identities=20%  Similarity=0.370  Sum_probs=65.4

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|+....+      ...+..+.+||++|+...+..|..++.+++++|||+|+++          ...+.+....+..+
T Consensus        59 ~t~~~~~~~~------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~----------~~s~~~~~~~l~~~  122 (192)
T 2b6h_A           59 PTIGFNVETV------EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVQESADELQKM  122 (192)
T ss_dssp             EETTEEEEEE------EETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTC----------GGGHHHHHHHHHHH
T ss_pred             CcCceeEEEE------EECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCC----------HHHHHHHHHHHHHH
Confidence            4556655556      5677899999999999889999999999999999999987          35677778888888


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccCc
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      +......+       .|++|++| +|+...
T Consensus       123 ~~~~~~~~-------~piilv~NK~Dl~~~  145 (192)
T 2b6h_A          123 LQEDELRD-------AVLLVFANKQDMPNA  145 (192)
T ss_dssp             HTCGGGTT-------CEEEEEEECTTSTTC
T ss_pred             hcccccCC-------CeEEEEEECCCCCCC
Confidence            87665555       78999998 999743

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.48  E-value=1.8e-07  Score=81.42  Aligned_cols=70  Identities=17%  Similarity=0.230  Sum_probs=48.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....++.+.. ....+       .|++
T Consensus        76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~-~~~~~-------~pii  137 (199)
T 2p5s_A           76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCE----------KSFLNIREWVDMIED-AAHET-------VPIM  137 (199)
T ss_dssp             EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHH-HC----------CCEE
T ss_pred             EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCCh----------HHHHHHHHHHHHHHH-hcCCC-------CCEE
Confidence            35689999999998899999999999999999999862          222222222222221 11112       6888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |++| +|+.
T Consensus       138 lv~NK~Dl~  146 (199)
T 2p5s_A          138 LVGNKADIR  146 (199)
T ss_dssp             EEEECGGGH
T ss_pred             EEEECcccc
Confidence            8888 9986

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.42  E-value=5.8e-07  Score=79.09  Aligned_cols=70  Identities=13%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-..       ...+.+-+..+...+..    +       .|++|
T Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~----~-------~piil  122 (218)
T 4djt_A           61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT-------CQNLARWVKEFQAVVGN----E-------APIVV  122 (218)
T ss_dssp             EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHCS----S-------SCEEE
T ss_pred             EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH-------HHHHHHHHHHHHHhcCC----C-------CCEEE
Confidence            568999999999999999999999999999999997311       11222222333333221    2       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+..
T Consensus       123 v~nK~Dl~~  131 (218)
T 4djt_A          123 CANKIDIKN  131 (218)
T ss_dssp             EEECTTCC-
T ss_pred             EEECCCCcc
Confidence            888 99874

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.42  E-value=3.6e-07  Score=78.30  Aligned_cols=118  Identities=15%  Similarity=0.098  Sum_probs=73.9

Q ss_pred             hhhhhccCCCCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCc
Q 019426          178 ENLQRLSDANYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY  257 (341)
Q Consensus       178 ~~l~ri~~~~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdy  257 (341)
                      +.+..-..+.|.|+..++-....+|.|+.-..... .........+.+||++|+...+..|..++.+++++|||+|+++ 
T Consensus        32 ~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~-  109 (198)
T 3t1o_A           32 KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDI-GEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-  109 (198)
T ss_dssp             HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSC-CCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCG-
T ss_pred             HHHHhhccccccccccccccccccceeeeeccccc-ccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCc-
Confidence            33333344556665544444455677765443310 0012345689999999999999999999999999999999995 


Q ss_pred             ccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCc
Q 019426          258 DQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       258 dq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                                .+..+....|+.+..  |+...-....-.|++|++| +|+...
T Consensus       110 ----------~~~~~~~~s~~~l~~--~l~~~~~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A          110 ----------NRLRANAESMRNMRE--NLAEYGLTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             ----------GGHHHHHHHHHHHHH--HHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred             ----------chhhHhHHHHHHHHH--HHHhhccccCCCCEEEEEEchhcccc
Confidence                      345555555555532  2211101112378999998 998743

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.39  E-value=1e-06  Score=73.01  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=32.5

Q ss_pred             cCCceeEEEecCCccc-------cccccccccCCccEEEEEeeccC
Q 019426          218 KSGEVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+..+.+||++|+..       .+..|..++.+++++|||+|.++
T Consensus        46 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~   91 (161)
T 2dyk_A           46 TDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRA   91 (161)
T ss_dssp             ETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSS
T ss_pred             eCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            3456789999999876       35678888999999999999986

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.73  E-value=4.4e-08  Score=85.58  Aligned_cols=70  Identities=10%  Similarity=0.092  Sum_probs=48.6

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....|-..+... ..+       .|+++
T Consensus        78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~~l~~~-~~~-------~piil  139 (204)
T 3th5_A           78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFENVRAKWYPEVRHH-CPN-------TPIIL  139 (204)
Confidence            3567999999998899999999999999999999862          22333332222222211 112       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       140 v~NK~Dl~~  148 (204)
T 3th5_A          140 VGTKLDLRD  148 (204)
Confidence            888 99974

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.23  E-value=5.7e-06  Score=73.63  Aligned_cols=75  Identities=19%  Similarity=0.155  Sum_probs=49.4

Q ss_pred             cCCceeEEEecCCccc----cc-----cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          218 KSGEVYRLFDVGGQRN----ER-----RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~----eR-----~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      ..+..+.+||++|+..    ++     ..|..++..++++|||+|+++-..        -.+.+.+.++..+...  +.+
T Consensus        73 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--------~~~~~~~~~~~~l~~~--~~~  142 (228)
T 2qu8_A           73 HKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG--------LTIKEQINLFYSIKSV--FSN  142 (228)
T ss_dssp             ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS--------SCHHHHHHHHHHHHTC--C-C
T ss_pred             cCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC--------cchHHHHHHHHHHHHh--hcC
Confidence            4457899999999943    33     334556788999999999987311        1133345566665542  223


Q ss_pred             ccccCCceeEEEEec-cCccCc
Q 019426          289 FFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~~  309 (341)
                             .|+++++| +|++..
T Consensus       143 -------~piilv~nK~Dl~~~  157 (228)
T 2qu8_A          143 -------KSIVIGFNKIDKCNM  157 (228)
T ss_dssp             -------CCEEEEEECGGGCC-
T ss_pred             -------CcEEEEEeCcccCCc
Confidence                   78888888 999844

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.11  E-value=4.8e-06  Score=84.25  Aligned_cols=68  Identities=7%  Similarity=0.023  Sum_probs=50.4

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      .+..+.+||++||...+..|..++.+++++|+|+|.+++          .++..-+..+....     .+       .|+
T Consensus        96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~-----~~-------~pv  153 (535)
T 3dpu_A           96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYG-----GK-------SPV  153 (535)
T ss_dssp             TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHS-----SS-------CCE
T ss_pred             ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhC-----CC-------CCE
Confidence            457899999999998888898899999999999999874          22322222222221     12       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       154 ilV~NK~Dl~~  164 (535)
T 3dpu_A          154 IVVMNKIDENP  164 (535)
T ss_dssp             EEEECCTTTCT
T ss_pred             EEEEECCCccc
Confidence            99998 99974

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.05  E-value=3.7e-05  Score=69.80  Aligned_cols=74  Identities=8%  Similarity=0.065  Sum_probs=45.4

Q ss_pred             ccCCceeEEEecCCccccc-----------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426          217 KKSGEVYRLFDVGGQRNER-----------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  285 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR-----------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~  285 (341)
                      .+.+..+.+||+.|+....           +.+..++.+++++|||+|.+.+.         ......+..+..++.. .
T Consensus        67 ~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~l~~~~~~-~  136 (260)
T 2xtp_A           67 SWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQRVKEIFGE-D  136 (260)
T ss_dssp             EETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHHHHHHHCG-G
T ss_pred             EeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHHHHHHhCc-h
Confidence            3456789999999985432           12223678999999999998642         1122233444444432 1


Q ss_pred             ccCccccCCceeEEEEec-cCcc
Q 019426          286 FEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       286 f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      ...       .+|+++.| +|+.
T Consensus       137 ~~~-------~~i~vv~nK~Dl~  152 (260)
T 2xtp_A          137 AMG-------HTIVLFTHKEDLN  152 (260)
T ss_dssp             GGG-------GEEEEEECGGGGT
T ss_pred             hhc-------cEEEEEEcccccC
Confidence            122       56777775 9987

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=98.01  E-value=5.3e-06  Score=79.33  Aligned_cols=71  Identities=13%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             CceeEEEecCCcccccc---ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC--ccccCccccCC
Q 019426          220 GEVYRLFDVGGQRNERR---KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ--PCFEVFFCATS  294 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~---kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~--~~f~~~~~~~~  294 (341)
                      .+++.+||++||...|.   .|.+||.+++++|||+|+++            ++.+++..+..++..  +...+      
T Consensus        45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd------------~~~~~~~~l~~~l~~~~~~~~~------  106 (331)
T 3r7w_B           45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD------------EYINAITNLAMIIEYAYKVNPS------  106 (331)
T ss_dssp             SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS------------CTTHHHHHHHHHHHHHHHHCTT------
T ss_pred             EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc------------hHHHHHHHHHHHHHHHhhcCCC------
Confidence            37899999999987764   35889999999999999886            145555555544431  11113      


Q ss_pred             ceeEEEEec-cCccCc
Q 019426          295 ALHITAFVA-CEHVSG  309 (341)
Q Consensus       295 ~~~iilf~n-~d~~~~  309 (341)
                       .|++|++| +|+.+.
T Consensus       107 -ipillvgNK~DL~~~  121 (331)
T 3r7w_B          107 -INIEVLIHKVDGLSE  121 (331)
T ss_dssp             -CEEEEECCCCCSSCS
T ss_pred             -CcEEEEEECcccCch
Confidence             78999999 999853

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.98  E-value=2.8e-05  Score=71.12  Aligned_cols=40  Identities=10%  Similarity=0.171  Sum_probs=28.7

Q ss_pred             ccCCceeEEEecCCccccccccccccC---------CccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFE---------GVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~---------~v~~IIFvvslSd  256 (341)
                      ...+..+.+||+.|+...+.....+++         +++++|||++++.
T Consensus        80 ~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~  128 (262)
T 3def_A           80 TMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDV  128 (262)
T ss_dssp             EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred             EECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCC
Confidence            456778999999999654433333332         7899999988875

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.98  E-value=2.3e-05  Score=70.31  Aligned_cols=41  Identities=15%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             cCCceeEEEecCC-----------ccccccccccccCCccEEEEEeeccCcc
Q 019426          218 KSGEVYRLFDVGG-----------QRNERRKWIHLFEGVSAVIFCAAISEYD  258 (341)
Q Consensus       218 ~~~~~~~l~DvgG-----------qr~eR~kW~~~f~~v~~IIFvvslSdyd  258 (341)
                      +.+..+.+||..|           ++..++.|..++.+++++|+|+|++.++
T Consensus        75 ~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~  126 (239)
T 3lxx_A           75 WKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT  126 (239)
T ss_dssp             ETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS
T ss_pred             eCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC
Confidence            4556789999999           3345566677788999999999998753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=97.96  E-value=1.3e-05  Score=68.03  Aligned_cols=70  Identities=10%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+......+..+.... ..+       .|++|
T Consensus        57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil  118 (183)
T 2fu5_C           57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIRNWIRNIEEHA-SAD-------VEKMI  118 (183)
T ss_dssp             EEEEEEEC---------CCTTTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred             EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence            6899999999998899999999999999999999872          33444444444443321 112       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       119 v~nK~Dl~~  127 (183)
T 2fu5_C          119 LGNKCDVND  127 (183)
T ss_dssp             EEEC--CCS
T ss_pred             EEECccCCc
Confidence            888 99974

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.92  E-value=1.8e-05  Score=66.72  Aligned_cols=71  Identities=7%  Similarity=0.099  Sum_probs=43.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+..... .+       .|++
T Consensus        59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~-------~pii  120 (180)
T 2g6b_A           59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK----------ASFDNIQAWLTEIHEYAQ-HD-------VALM  120 (180)
T ss_dssp             EEEEEEEECCCC--------CCGGGCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSC-TT-------CEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CC-------CcEE
Confidence            35799999999999999999999999999999999873          222222222333322110 22       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       121 lv~nK~Dl~~  130 (180)
T 2g6b_A          121 LLGNKVDSAH  130 (180)
T ss_dssp             EEEECCSTTS
T ss_pred             EEEECcccCc
Confidence            8888 99984

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.92  E-value=2.1e-05  Score=72.29  Aligned_cols=68  Identities=9%  Similarity=0.027  Sum_probs=48.9

Q ss_pred             ccCCceeEEEecCCcccccc------cccccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          217 KKSGEVYRLFDVGGQRNERR------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~------kW~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      .+.+..+.+||.+|+...+.      .|..|+  .+++++|+|+|.++.             ...+.++..+....   .
T Consensus        46 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~-------------~~~~~~~~~~~~~~---~  109 (271)
T 3k53_A           46 EYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL-------------MRNLFLTLELFEME---V  109 (271)
T ss_dssp             EETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH-------------HHHHHHHHHHHHTT---C
T ss_pred             EECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc-------------hhhHHHHHHHHhcC---C
Confidence            45667899999999977655      566676  789999999999863             23444444444321   1


Q ss_pred             ccccCCceeEEEEec-cCcc
Q 019426          289 FFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~  307 (341)
                             .|+++++| +|+.
T Consensus       110 -------~p~ilv~NK~Dl~  122 (271)
T 3k53_A          110 -------KNIILVLNKFDLL  122 (271)
T ss_dssp             -------CSEEEEEECHHHH
T ss_pred             -------CCEEEEEEChhcC
Confidence                   67888888 9976

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.91  E-value=1.3e-05  Score=69.86  Aligned_cols=70  Identities=11%  Similarity=0.104  Sum_probs=52.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+++....++.+.... -.+       .|++|
T Consensus        78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~piil  139 (201)
T 2hup_A           78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKR----------SSFLSVPHWIEDVRKYA-GSN-------IVQLL  139 (201)
T ss_dssp             EEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBH----------HHHHTHHHHHHHHHHHS-CTT-------CEEEE
T ss_pred             EEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CCEEE
Confidence            6899999999998899999999999999999999862          33444444444444321 122       78888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       140 v~NK~Dl~~  148 (201)
T 2hup_A          140 IGNKSDLSE  148 (201)
T ss_dssp             EEECTTCGG
T ss_pred             EEECCcccc
Confidence            888 99974

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.90  E-value=1.4e-05  Score=67.24  Aligned_cols=36  Identities=19%  Similarity=0.373  Sum_probs=34.2

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++
T Consensus        56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   91 (178)
T 2hxs_A           56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN   91 (178)
T ss_dssp             EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC
T ss_pred             EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC
Confidence            689999999999999999999999999999999987

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.88  E-value=4.1e-05  Score=65.18  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ...||+++|..++|||||++++
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l   43 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNAL   43 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHH
Confidence            3479999999999999999875

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.77  E-value=7.4e-05  Score=64.04  Aligned_cols=70  Identities=11%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH-HHHHHhcCccccCccccCCceeE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~-lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++.          ..+.+... .+..+...  ..+       .|+
T Consensus        65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~-------~pi  125 (194)
T 2atx_A           65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP----------ASFQNVKEEWVPELKEY--APN-------VPF  125 (194)
T ss_dssp             EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--STT-------CCE
T ss_pred             EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCC-------CCE
Confidence            36789999999998999999999999999999999872          33444432 22222221  113       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|++| +|+..
T Consensus       126 ilv~nK~Dl~~  136 (194)
T 2atx_A          126 LLIGTQIDLRD  136 (194)
T ss_dssp             EEEEECTTSTT
T ss_pred             EEEEEChhhcc
Confidence            88888 99984

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.76  E-value=4.8e-05  Score=65.79  Aligned_cols=71  Identities=17%  Similarity=0.311  Sum_probs=51.2

Q ss_pred             CCceeEEEecCCccc-ccccc--ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc--cccCccccC
Q 019426          219 SGEVYRLFDVGGQRN-ERRKW--IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEVFFCAT  293 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~-eR~kW--~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~--~f~~~~~~~  293 (341)
                      ....+.+||++||.. .+..|  ..+|.+++++|||+|+++            +..++...+...+...  ...+     
T Consensus        67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~------------~~~~~~~~~~~~l~~~~~~~~~-----  129 (196)
T 3llu_A           67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD------------DYMEALTRLHITVSKAYKVNPD-----  129 (196)
T ss_dssp             TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTS------------CCHHHHHHHHHHHHHHHHHCTT-----
T ss_pred             CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCC------------chHHHHHHHHHHHHHHHhcCCC-----
Confidence            457899999999976 45567  799999999999999886            2444554444444321  1123     


Q ss_pred             CceeEEEEec-cCccC
Q 019426          294 SALHITAFVA-CEHVS  308 (341)
Q Consensus       294 ~~~~iilf~n-~d~~~  308 (341)
                        .|++|++| +|++.
T Consensus       130 --~piilv~nK~Dl~~  143 (196)
T 3llu_A          130 --MNFEVFIHKVDGLS  143 (196)
T ss_dssp             --CEEEEEEECGGGSC
T ss_pred             --CcEEEEEeccccCc
Confidence              78999998 99874

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=97.74  E-value=5.5e-05  Score=66.86  Aligned_cols=70  Identities=10%  Similarity=0.115  Sum_probs=51.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.... ..+       .|++|
T Consensus        62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~----------~s~~~~~~~l~~i~~~~-~~~-------~piil  123 (223)
T 3cpj_B           62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKS----------SSYENCNHWLSELRENA-DDN-------VAVGL  123 (223)
T ss_dssp             EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCH----------HHHHHHHHHHHHHHHHC-C---------CEEEE
T ss_pred             EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhC-CCC-------CeEEE
Confidence            6899999999999999999999999999999999872          33444444444443321 122       68888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       124 v~nK~Dl~~  132 (223)
T 3cpj_B          124 IGNKSDLAH  132 (223)
T ss_dssp             EECCGGGGG
T ss_pred             EEECccccc
Confidence            888 99974

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.74  E-value=5.5e-05  Score=62.77  Aligned_cols=72  Identities=14%  Similarity=0.071  Sum_probs=42.0

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++          ...+++....+..+.......+       .|++
T Consensus        48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~p~i  110 (166)
T 3q72_A           48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDD-------VPII  110 (166)
T ss_dssp             EEEEEEEECC---------------CCEEEEEEETTC----------HHHHHHHHHHHHHHHHCC---C-------CCEE
T ss_pred             EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence            4578999999999999999999999999999999997          3456666666677765433334       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       111 lv~nK~Dl~~  120 (166)
T 3q72_A          111 LVGNKSDLVR  120 (166)
T ss_dssp             EEEECTTCCS
T ss_pred             EEEecccccc
Confidence            8888 99874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.71  E-value=3.6e-05  Score=65.17  Aligned_cols=72  Identities=7%  Similarity=0.122  Sum_probs=51.7

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|+|+|+++-          ..+......+..+.......+       .|++
T Consensus        65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~i  127 (183)
T 3kkq_A           65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK----------ASFEHVDRFHQLILRVKDRES-------FPMI  127 (183)
T ss_dssp             EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTSSC-------CCEE
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CcEE
Confidence            34577899999999999999999999999999999972          233333344444433222223       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |++| +|+..
T Consensus       128 lv~nK~Dl~~  137 (183)
T 3kkq_A          128 LVANKVDLMH  137 (183)
T ss_dssp             EEEECTTCST
T ss_pred             EEEECCCchh
Confidence            8888 99874

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.67  E-value=5.4e-05  Score=65.96  Aligned_cols=72  Identities=11%  Similarity=0.045  Sum_probs=49.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....|-..+... ..+       .|++
T Consensus        56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~pii  117 (212)
T 2j0v_A           56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISK----------ASYENVLKKWMPELRRF-APN-------VPIV  117 (212)
T ss_dssp             EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-CTT-------CCEE
T ss_pred             EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence            46899999999999999999999999999999999872          33444432222222211 113       7888


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |++| +|+...
T Consensus       118 lv~nK~Dl~~~  128 (212)
T 2j0v_A          118 LVGTKLDLRDD  128 (212)
T ss_dssp             EEEECHHHHTC
T ss_pred             EEEeCHHhhhC
Confidence            8888 998743

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.64  E-value=0.00038  Score=69.42  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=41.5

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      |..+....|      ...+..+.+||+.|+...++.+..++.+++++|+|+|.++
T Consensus        98 Ti~~~~~~~------~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~  146 (483)
T 3p26_A           98 TVSICTSHF------STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST  146 (483)
T ss_dssp             SCCCCEEEE------ECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC
T ss_pred             ceEeeeEEE------ecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCC
Confidence            344445556      5667899999999999999999999999999999999986

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.63  E-value=8.4e-05  Score=62.19  Aligned_cols=71  Identities=15%  Similarity=0.106  Sum_probs=51.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+.... -.+       .|++
T Consensus        62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~-------~pii  123 (179)
T 2y8e_A           62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNT----------NSFHQTSKWIDDVRTER-GSD-------VIIM  123 (179)
T ss_dssp             EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHH-TTS-------SEEE
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCC-------CcEE
Confidence            35799999999998999999999999999999999862          22333334444443321 122       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       124 lv~nK~Dl~~  133 (179)
T 2y8e_A          124 LVGNKTDLSD  133 (179)
T ss_dssp             EEEECGGGGG
T ss_pred             EEEECCcccc
Confidence            8888 99873

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=97.61  E-value=8.7e-05  Score=69.68  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=56.1

Q ss_pred             ccCeEEEEeccCCCccc-CCceeEEEecCCcccc-----ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH
Q 019426          202 TTGVVEIQFSPVGEHKK-SGEVYRLFDVGGQRNE-----RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE  275 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~-~~~~~~l~DvgGqr~e-----R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~  275 (341)
                      |.|+....+      .+ ++..+.+||++||...     +..|..+|.+++++|||+|+++-          ..+++...
T Consensus        38 Ti~~~~~~~------~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~----------~s~~~l~~  101 (307)
T 3r7w_A           38 TIDVEHSHL------RFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST----------EVLKDIEI  101 (307)
T ss_dssp             CCSEEEEEE------EETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS----------CHHHHHHH
T ss_pred             ccceEEEEE------EeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh----------hhHHHHHH
Confidence            455555544      22 4688999999999877     77899999999999999999872          22333222


Q ss_pred             ---HHHHHhcCccccCccccCCceeEEEEec-cCccC
Q 019426          276 ---LFDWVLKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       276 ---lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                         .+..+...  ..+       .|+++++| +|+..
T Consensus       102 ~~~~l~~l~~~--~~~-------~piilv~NK~Dl~~  129 (307)
T 3r7w_A          102 FAKALKQLRKY--SPD-------AKIFVLLHKMDLVQ  129 (307)
T ss_dssp             HHHHHHHHHHH--CTT-------CEEEEEEECGGGSC
T ss_pred             HHHHHHHHHHh--CCC-------CeEEEEEecccccc
Confidence               22222211  112       78999998 99985

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=97.60  E-value=7.3e-05  Score=66.84  Aligned_cols=72  Identities=15%  Similarity=0.099  Sum_probs=53.8

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ..+.+.+||++||...+..|..||.+++++|+|.|+++.          +.++.....+..+.... -.+       .||
T Consensus        60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~----------~Sf~~i~~~~~~i~~~~-~~~-------~pi  121 (216)
T 4dkx_A           60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNV----------NSFQQTTKWIDDVRTER-GSD-------VII  121 (216)
T ss_dssp             CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHH-TTS-------SEE
T ss_pred             eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchh----------HHHHHHHHHHHHHHHhc-CCC-------CeE
Confidence            346789999999999999999999999999999999973          34444444444443321 112       789


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       122 ilVgNK~Dl~~  132 (216)
T 4dkx_A          122 MLVGNKTDLAD  132 (216)
T ss_dssp             EEEEECTTCGG
T ss_pred             EEEeeccchHh
Confidence            99999 99874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.58  E-value=5.4e-05  Score=63.80  Aligned_cols=72  Identities=14%  Similarity=0.077  Sum_probs=48.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+...+..|..++.+++++|||+|+++-          ..+++....|...+... ..+       .|++
T Consensus        55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~pii  116 (182)
T 3bwd_D           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------ASYENVSKKWIPELKHY-APG-------VPIV  116 (182)
T ss_dssp             ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-CTT-------CCEE
T ss_pred             EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh-CCC-------CCEE
Confidence            35678999999999999999999999999999999862          33433332222222211 113       7888


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |.+| +|+...
T Consensus       117 lv~nK~Dl~~~  127 (182)
T 3bwd_D          117 LVGTKLDLRDD  127 (182)
T ss_dssp             EEEECHHHHTC
T ss_pred             EEEechhhhcC
Confidence            8888 998743

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.55  E-value=0.00018  Score=69.58  Aligned_cols=50  Identities=10%  Similarity=0.175  Sum_probs=39.2

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..|.++....|      ...+..+.+||+.|+....+.....+..++++|+|+| ++
T Consensus        45 giTi~~~~~~~------~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~   94 (370)
T 2elf_A           45 GTSSDITMYNN------DKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ   94 (370)
T ss_dssp             EEESSSEEEEE------CSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT
T ss_pred             CEEEEeeEEEE------ecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC
Confidence            34444444556      5667789999999998887888888899999999999 53

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.54  E-value=0.00013  Score=62.64  Aligned_cols=73  Identities=5%  Similarity=0.079  Sum_probs=48.7

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc--cccCccccCCc
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP--CFEVFFCATSA  295 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~--~f~~~~~~~~~  295 (341)
                      .....+.+||++|+...+. |..++.+++++|+|+|+++          ...+++....+..+....  ...+       
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~-------  127 (187)
T 3c5c_A           66 HQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDS----------RQSFDSSSSYLELLALHAKETQRS-------  127 (187)
T ss_dssp             TEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHHHHCCC-------
T ss_pred             CEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhhccCCC-------
Confidence            3456789999999976655 6788999999999999996          234555444444444321  0123       


Q ss_pred             eeEEEEec-cCccC
Q 019426          296 LHITAFVA-CEHVS  308 (341)
Q Consensus       296 ~~iilf~n-~d~~~  308 (341)
                      .|++|.+| +|+..
T Consensus       128 ~piilv~nK~Dl~~  141 (187)
T 3c5c_A          128 IPALLLGNKLDMAQ  141 (187)
T ss_dssp             CCEEEEEECGGGGG
T ss_pred             CCEEEEEECcchhh
Confidence            78888888 99973

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.47  E-value=5.1e-05  Score=64.91  Aligned_cols=72  Identities=18%  Similarity=0.192  Sum_probs=54.6

Q ss_pred             ceeEEEecCCccccccccccccCC----ccEEEEEeecc-CcccccccCCCccchHHHHHHHHHHhcCccc---cCcccc
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAIS-EYDQTLFEDEQKNRMMETKELFDWVLKQPCF---EVFFCA  292 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~----v~~IIFvvslS-dydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f---~~~~~~  292 (341)
                      ..+.+||++|+...+..|..++.+    ++++|||+|.+ +          ...+.+....+..++.....   .+    
T Consensus        91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----  156 (193)
T 2ged_A           91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENG----  156 (193)
T ss_dssp             TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC----------HHHHHHHHHHHHHHHHHHHHHSTTC----
T ss_pred             CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC----------chhHHHHHHHHHHHHhhhhhccccC----
Confidence            468899999999888999998876    89999999998 3          34566666666666654322   22    


Q ss_pred             CCceeEEEEec-cCccCc
Q 019426          293 TSALHITAFVA-CEHVSG  309 (341)
Q Consensus       293 ~~~~~iilf~n-~d~~~~  309 (341)
                         .|+++++| +|+...
T Consensus       157 ---~p~ilv~nK~Dl~~~  171 (193)
T 2ged_A          157 ---IDILIACNKSELFTA  171 (193)
T ss_dssp             ---CCEEEEEECTTSTTC
T ss_pred             ---CCEEEEEEchHhcCC
Confidence               78888888 999843

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.47  E-value=0.00027  Score=60.02  Aligned_cols=65  Identities=15%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++|+...+..|..++.+++++|||+|+++-          ..+.+....+..+....   +       .|+++
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~---~-------~piil  152 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS----------NTLDRAKTWVNQLKISS---N-------YIIIL  152 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS---C-------CEEEE
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhhC---C-------CcEEE
Confidence            7899999999998889999999999999999999872          23334344444443311   1       68888


Q ss_pred             Eec-cC
Q 019426          301 FVA-CE  305 (341)
Q Consensus       301 f~n-~d  305 (341)
                      .+| +|
T Consensus       153 v~NK~D  158 (208)
T 3clv_A          153 VANKID  158 (208)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            888 99

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.40  E-value=8.4e-05  Score=65.01  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=56.2

Q ss_pred             ceeEEEecCCccccccccccccCC----ccEEEEEeecc-CcccccccCCCccchHHHHHHHHHHhcCccc---cCcccc
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEG----VSAVIFCAAIS-EYDQTLFEDEQKNRMMETKELFDWVLKQPCF---EVFFCA  292 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~----v~~IIFvvslS-dydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f---~~~~~~  292 (341)
                      ..+.+||++|+...|..|..++.+    ++++|||+|.+ +          ...+.+....+..++.....   .+    
T Consensus        55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----  120 (218)
T 1nrj_B           55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD----------PKKLTTTAEFLVDILSITESSCENG----  120 (218)
T ss_dssp             SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC----------TTCCHHHHHHHHHHHHHHHHHSTTC----
T ss_pred             ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCC----------hHHHHHHHHHHHHHHhcccccccCC----
Confidence            468999999999999999999887    89999999998 3          34566666667776654322   23    


Q ss_pred             CCceeEEEEec-cCccCcc
Q 019426          293 TSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       293 ~~~~~iilf~n-~d~~~~~  310 (341)
                         .|++|.+| +|+....
T Consensus       121 ---~p~ilv~nK~Dl~~~~  136 (218)
T 1nrj_B          121 ---IDILIACNKSELFTAR  136 (218)
T ss_dssp             ---CCEEEEEECTTSTTCC
T ss_pred             ---CCEEEEEEchHhcccC
Confidence               78898888 9998543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.38  E-value=0.0018  Score=61.84  Aligned_cols=75  Identities=17%  Similarity=0.131  Sum_probs=46.3

Q ss_pred             cCCceeEEEecCCccccc---------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          218 KSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR---------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      ..+..+.+||..|+....         .....+...+++++||+|.++...        --+.+...+++.+...  +.+
T Consensus       211 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~--------~~~~~~~~~~~~i~~~--~~~  280 (357)
T 2e87_A          211 DGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCG--------FPLEEQIHLFEEVHGE--FKD  280 (357)
T ss_dssp             ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTS--------SCHHHHHHHHHHHHHH--TTT
T ss_pred             ecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCcccc--------CCHHHHHHHHHHHHHh--cCC
Confidence            345678999999985321         222234456899999999886321        0234445555555431  113


Q ss_pred             ccccCCceeEEEEec-cCccCc
Q 019426          289 FFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~~  309 (341)
                             .|+++.+| +|+...
T Consensus       281 -------~piilV~NK~Dl~~~  295 (357)
T 2e87_A          281 -------LPFLVVINKIDVADE  295 (357)
T ss_dssp             -------SCEEEEECCTTTCCH
T ss_pred             -------CCEEEEEECcccCCh
Confidence                   68888888 999743

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=97.36  E-value=0.00047  Score=63.31  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..++|+|+|.+|+|||||++.+
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L   28 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSL   28 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHH
Confidence            4589999999999999999875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.27  E-value=0.0016  Score=64.90  Aligned_cols=39  Identities=13%  Similarity=0.174  Sum_probs=22.0

Q ss_pred             cCCceeEEEecCCcccccccc--------ccccCCccEEEEEeeccC
Q 019426          218 KSGEVYRLFDVGGQRNERRKW--------IHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW--------~~~f~~v~~IIFvvslSd  256 (341)
                      +++..+.+||..|++.....|        ..++.+++++|||+|.++
T Consensus       269 ~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~  315 (462)
T 3geh_A          269 VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT  315 (462)
T ss_dssp             ETTEEEEECC--------------------CCCCSCSEEEEEEETTT
T ss_pred             ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC
Confidence            345667889999986543322        346789999999999986

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.25  E-value=0.0018  Score=60.49  Aligned_cols=67  Identities=12%  Similarity=0.067  Sum_probs=44.8

Q ss_pred             CCceeEEEecCCcc---------ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCc
Q 019426          219 SGEVYRLFDVGGQR---------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVF  289 (341)
Q Consensus       219 ~~~~~~l~DvgGqr---------~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~  289 (341)
                      ++..+.++|++|+.         ..+..+..++.++++++||+|.+++.          ..  ...+++.+..    .+ 
T Consensus        54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~----------~~--~~~i~~~l~~----~~-  116 (301)
T 1ega_A           54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT----------PD--DEMVLNKLRE----GK-  116 (301)
T ss_dssp             TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC----------HH--HHHHHHHHHS----SS-
T ss_pred             CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCC----------HH--HHHHHHHHHh----cC-
Confidence            34578899999986         23445667889999999999987631          11  1223333322    12 


Q ss_pred             cccCCceeEEEEec-cCccC
Q 019426          290 FCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       290 ~~~~~~~~iilf~n-~d~~~  308 (341)
                            .|+++++| +|+..
T Consensus       117 ------~P~ilvlNK~D~~~  130 (301)
T 1ega_A          117 ------APVILAVNKVDNVQ  130 (301)
T ss_dssp             ------SCEEEEEESTTTCC
T ss_pred             ------CCEEEEEECcccCc
Confidence                  68888888 99984

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.18  E-value=0.00022  Score=61.75  Aligned_cols=71  Identities=8%  Similarity=0.040  Sum_probs=49.0

Q ss_pred             ceeEEEecCCcccccc-ccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRNERR-KWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~-kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +.+.+||++|+...+. .|..++.+++++|+|+|+++-          ..+......+..+.......+       .|++
T Consensus        72 ~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~-------~pii  134 (195)
T 3cbq_A           72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHD-------LPVI  134 (195)
T ss_dssp             EEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSC-------CCEE
T ss_pred             EEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCC-------CCEE
Confidence            4678999999976554 677789999999999999872          333334444444433221122       7888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       135 lv~nK~Dl~~  144 (195)
T 3cbq_A          135 LVGNKSDLAR  144 (195)
T ss_dssp             EEEECTTCTT
T ss_pred             EEeechhccc
Confidence            8888 99974

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.10  E-value=0.00098  Score=55.85  Aligned_cols=65  Identities=11%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHH---HHHHHhcCccccCccccCCce
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKE---LFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~---lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+.+||++||..     ..++.+++++|+|+|+++-          ..+.....   .+..+.... ..+       .
T Consensus        53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~-~~~-------~  109 (178)
T 2iwr_A           53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDE----------NSFQAVSRLHGQLSSLRGEG-RGG-------L  109 (178)
T ss_dssp             EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCSS-SCC-------C
T ss_pred             EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHHhcC-CCC-------C
Confidence            35789999999864     4578899999999999862          33433333   233332211 122       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |++|.+| +|+.
T Consensus       110 piilv~nK~Dl~  121 (178)
T 2iwr_A          110 ALALVGTQDRIS  121 (178)
T ss_dssp             EEEEEEECTTCB
T ss_pred             CEEEEEECcccc
Confidence            8888888 9984

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.01  E-value=0.00052  Score=58.50  Aligned_cols=72  Identities=8%  Similarity=0.024  Sum_probs=48.5

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++++|+|+++-.         ..+......+..+...  ..+       .|++
T Consensus        55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~s~~~~~~~~~~~~~~--~~~-------~pii  116 (184)
T 2zej_A           55 DLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ---------AEVDAMKPWLFNIKAR--ASS-------SPVI  116 (184)
T ss_dssp             -CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH---------HHHHTHHHHHHHHHHH--CTT-------CEEE
T ss_pred             ceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch---------hHHHHHHHHHHHHHhh--CCC-------CcEE
Confidence            568999999999888888888999999999999998621         1122222222322211  112       7889


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |.+| +|+...
T Consensus       117 lv~nK~Dl~~~  127 (184)
T 2zej_A          117 LVGTHLDVSDE  127 (184)
T ss_dssp             EEEECGGGCCH
T ss_pred             EEEECCCcccc
Confidence            9988 898743

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=96.95  E-value=0.0016  Score=63.43  Aligned_cols=68  Identities=15%  Similarity=0.025  Sum_probs=46.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||+.|+....+.+......++++|+|+|.++-.          .+..+.+.+..+-   .+.       ..|+++
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~----------~~~qt~e~l~~~~---~~~-------~~~iiv  142 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC----------PRPQTREHLMALQ---IIG-------QKNIII  142 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS----------SCHHHHHHHHHHH---HHT-------CCCEEE
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC----------CChhHHHHHHHHH---HcC-------CCcEEE
Confidence            46899999999877777777778899999999988621          1233333332221   111       156888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       143 viNK~Dl~~  151 (410)
T 1kk1_A          143 AQNKIELVD  151 (410)
T ss_dssp             EEECGGGSC
T ss_pred             EEECccCCC
Confidence            888 99984

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=96.65  E-value=0.0031  Score=63.75  Aligned_cols=70  Identities=11%  Similarity=0.115  Sum_probs=55.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+..+.+||+.|+...+..|..++..++++|+|+|.++-           -......+|..+...    +       .
T Consensus        78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g-----------~~~~t~~~~~~~~~~----~-------i  135 (528)
T 3tr5_A           78 PYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG-----------VEPRTIKLMEVCRLR----H-------T  135 (528)
T ss_dssp             EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHHHTT----T-------C
T ss_pred             EeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC-----------CCHHHHHHHHHHHHc----C-------C
Confidence            56778999999999999999999999999999999999862           134455666555432    3       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++++| +|+..
T Consensus       136 PiivviNK~Dl~~  148 (528)
T 3tr5_A          136 PIMTFINKMDRDT  148 (528)
T ss_dssp             CEEEEEECTTSCC
T ss_pred             CEEEEEeCCCCcc
Confidence            8999999 99963

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.62  E-value=0.0029  Score=55.94  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=50.1

Q ss_pred             ceeEEEecCCccc-cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~-eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ..+.+||+.|+.. ++..+..|+.+++++|+|.|+++          ...++.....+..+.......+       .|++
T Consensus        87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~----------~~sf~~~~~~~~~l~~~~~~~~-------~pii  149 (211)
T 2g3y_A           87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTED-------IPII  149 (211)
T ss_dssp             EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTT-------SCEE
T ss_pred             eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCC----------HHHHHHHHHHHHHHHHHhCCCC-------CcEE
Confidence            4567899999876 44455667889999999999997          3455555555555544322223       7899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       150 lVgNK~DL~~  159 (211)
T 2g3y_A          150 LVGNKSDLVR  159 (211)
T ss_dssp             EEEECTTCGG
T ss_pred             EEEEChHHhc
Confidence            9999 99873

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.56  E-value=0.0042  Score=53.39  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=47.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      +.+.+||++|+...+..|..++.+++++|+|+|+++.          ..+.+....+..+... .-.+       .|+++
T Consensus        54 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~~i~~  115 (199)
T 2f9l_A           54 IKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH----------LTYENVERWLKELRDH-ADSN-------IVIML  115 (199)
T ss_dssp             EEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTT-------CEEEE
T ss_pred             EEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCC-------CeEEE
Confidence            5678999999988888899999999999999998863          2222222233333211 1112       68888


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      .+| +|+.
T Consensus       116 v~nK~Dl~  123 (199)
T 2f9l_A          116 VGNKSDLR  123 (199)
T ss_dssp             EEECTTCG
T ss_pred             EEECcccc
Confidence            888 9986

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.51  E-value=0.0047  Score=56.36  Aligned_cols=67  Identities=13%  Similarity=0.100  Sum_probs=48.4

Q ss_pred             ccCCceeEEEecCCcccccccc------cccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKW------IHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW------~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      ...+..+.+||++|+.+.+..|      ..++  .+++++|+|+|.++..             ..+.++..+...    +
T Consensus        48 ~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~-------------~~~~~~~~l~~~----~  110 (258)
T 3a1s_A           48 TYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE-------------QSLYLLLEILEM----E  110 (258)
T ss_dssp             EETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH-------------HHHHHHHHHHTT----T
T ss_pred             EECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh-------------hHHHHHHHHHhc----C
Confidence            4556789999999998777655      3444  6899999999998732             223344555432    2


Q ss_pred             ccccCCceeEEEEec-cCcc
Q 019426          289 FFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~  307 (341)
                             .|+++.+| +|+.
T Consensus       111 -------~pvilv~NK~Dl~  123 (258)
T 3a1s_A          111 -------KKVILAMTAIDEA  123 (258)
T ss_dssp             -------CCEEEEEECHHHH
T ss_pred             -------CCEEEEEECcCCC
Confidence                   78899998 9986

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.43  E-value=0.0069  Score=56.50  Aligned_cols=33  Identities=12%  Similarity=0.012  Sum_probs=30.7

Q ss_pred             eeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          222 VYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       222 ~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ++.+||+  |...+..|..++.+++++|+|+|+++
T Consensus        64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~   96 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKM   96 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTTEESCCEEEEEECSST
T ss_pred             eEEEEEE--ccccceeeccccccCCEEEEEEeCCC
Confidence            7899999  87788899999999999999999997

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.36  E-value=0.0058  Score=55.70  Aligned_cols=68  Identities=6%  Similarity=-0.056  Sum_probs=48.3

Q ss_pred             ccCCceeEEEecCCcccccc----------cccccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426          217 KKSGEVYRLFDVGGQRNERR----------KWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  284 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~----------kW~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~  284 (341)
                      .+++..+.+||++|+.+.+.          .+..++  .++++||||+|.++             ++..+.+...+... 
T Consensus        44 ~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~-------------~~~~~~l~~~l~~~-  109 (256)
T 3iby_A           44 LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH-------------LERHLYLTSQLFEL-  109 (256)
T ss_dssp             EETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG-------------HHHHHHHHHHHTTS-
T ss_pred             EECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC-------------chhHHHHHHHHHHc-
Confidence            45667899999999976654          355666  89999999999986             23334444444332 


Q ss_pred             cccCccccCCceeEEEEec-cCccC
Q 019426          285 CFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       285 ~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                         +       .|+++.+| +|+..
T Consensus       110 ---~-------~pvilv~NK~Dl~~  124 (256)
T 3iby_A          110 ---G-------KPVVVALNMMDIAE  124 (256)
T ss_dssp             ---C-------SCEEEEEECHHHHH
T ss_pred             ---C-------CCEEEEEEChhcCC
Confidence               2       68888888 99873

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=96.33  E-value=0.0059  Score=61.74  Aligned_cols=71  Identities=11%  Similarity=0.084  Sum_probs=53.3

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+..+.+||++|+...+..+..++..++++|+|+|.++-.           ......+++.+..    .+       .
T Consensus        78 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-----------~~~t~~~~~~~~~----~~-------i  135 (529)
T 2h5e_A           78 PYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-----------EDRTRKLMEVTRL----RD-------T  135 (529)
T ss_dssp             EETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-----------CHHHHHHHHHHTT----TT-------C
T ss_pred             EECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-----------hHHHHHHHHHHHH----cC-------C
Confidence            567889999999999888888888999999999999998631           1233444443322    13       6


Q ss_pred             eEEEEec-cCccCc
Q 019426          297 HITAFVA-CEHVSG  309 (341)
Q Consensus       297 ~iilf~n-~d~~~~  309 (341)
                      |+++++| +|+...
T Consensus       136 piivviNK~Dl~~~  149 (529)
T 2h5e_A          136 PILTFMNKLDRDIR  149 (529)
T ss_dssp             CEEEEEECTTSCCS
T ss_pred             CEEEEEcCcCCccc
Confidence            8899999 999743

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=96.29  E-value=0.006  Score=59.13  Aligned_cols=79  Identities=15%  Similarity=0.221  Sum_probs=55.6

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.++....|      ...+..+.+||+.|+....+.+..++..++++|+|+|.++-           -+.++++.+..+.
T Consensus        53 Ti~~~~~~~------~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~~  115 (397)
T 1d2e_A           53 TINAAHVEY------STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLAR  115 (397)
T ss_dssp             EEECEEEEE------ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHHH
T ss_pred             EEEeeeEEe------ccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-----------CCHHHHHHHHHHH
Confidence            444444556      45678899999999988888888999999999999999862           1334444443222


Q ss_pred             cCccccCccccCCcee-EEEEec-cCccC
Q 019426          282 KQPCFEVFFCATSALH-ITAFVA-CEHVS  308 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~-iilf~n-~d~~~  308 (341)
                      .    .+       .| +++++| +|+..
T Consensus       116 ~----~~-------vp~iivviNK~Dl~~  133 (397)
T 1d2e_A          116 Q----IG-------VEHVVVYVNKADAVQ  133 (397)
T ss_dssp             H----TT-------CCCEEEEEECGGGCS
T ss_pred             H----cC-------CCeEEEEEECcccCC
Confidence            1    12       45 678888 99983

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.22  E-value=0.0034  Score=61.60  Aligned_cols=70  Identities=16%  Similarity=0.148  Sum_probs=43.5

Q ss_pred             ccCCceeEEEecCCcc--------ccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          217 KKSGEVYRLFDVGGQR--------NERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr--------~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      .+.+..+.+||+||+.        ..+..|..++++++++|||+|.++-            +...-..+..++..   .+
T Consensus        47 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~------------~~~~d~~~~~~l~~---~~  111 (436)
T 2hjg_A           47 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG------------VTAADEEVAKILYR---TK  111 (436)
T ss_dssp             TTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC------------SCHHHHHHHHHHTT---CC
T ss_pred             EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC------------CCHHHHHHHHHHHH---cC
Confidence            5667789999999985        4567788899999999999998752            11111222233321   12


Q ss_pred             ccccCCceeEEEEec-cCccC
Q 019426          289 FFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~  308 (341)
                             .|++|.+| +|...
T Consensus       112 -------~pvilv~NK~D~~~  125 (436)
T 2hjg_A          112 -------KPVVLAVNKLDNTE  125 (436)
T ss_dssp             -------SCEEEEEECCCC--
T ss_pred             -------CCEEEEEECccCcc
Confidence                   68899998 99874

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=96.19  E-value=0.0079  Score=58.34  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+..+.+||+.|+....+.+..++..++++|+|+|.++-.           +..+.+.+..+..    .+       .
T Consensus        71 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~-----------~~qt~~~l~~~~~----~~-------i  128 (405)
T 2c78_A           71 ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGP-----------MPQTREHILLARQ----VG-------V  128 (405)
T ss_dssp             ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCC-----------CHHHHHHHHHHHH----TT-------C
T ss_pred             ccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCC-----------cHHHHHHHHHHHH----cC-------C
Confidence            456788999999999988888999999999999999988621           2333444433321    12       4


Q ss_pred             e-EEEEec-cCccC
Q 019426          297 H-ITAFVA-CEHVS  308 (341)
Q Consensus       297 ~-iilf~n-~d~~~  308 (341)
                      | +++++| +|+..
T Consensus       129 p~iivviNK~Dl~~  142 (405)
T 2c78_A          129 PYIVVFMNKVDMVD  142 (405)
T ss_dssp             CCEEEEEECGGGCC
T ss_pred             CEEEEEEECccccC
Confidence            5 788888 99983

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.15  E-value=0.013  Score=57.48  Aligned_cols=40  Identities=10%  Similarity=0.052  Sum_probs=36.1

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+..+.+||+.|+....+.|..++..++++|+|+|.++
T Consensus       100 ~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~  139 (434)
T 1zun_B          100 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY  139 (434)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT
T ss_pred             ecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            4566789999999999888899999999999999999886

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=96.12  E-value=0.0049  Score=55.86  Aligned_cols=66  Identities=8%  Similarity=0.025  Sum_probs=42.2

Q ss_pred             cCCccccccccccccC---------------------CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426          228 VGGQRNERRKWIHLFE---------------------GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  286 (341)
Q Consensus       228 vgGqr~eR~kW~~~f~---------------------~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f  286 (341)
                      .+||...+..|..+|.                     +++++|+|+|+++-.        ...++.....+..+......
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~--------~~s~~~~~~~l~~i~~~~~~  196 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM--------NRNFDDQLKFVSNLYNQLAK  196 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC------------CHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc--------hhhHHHHHHHHHHHHHHhcc
Confidence            6788777888888888                     799999999998620        02233333333333322111


Q ss_pred             cCccccCCceeEEEEec-cCccC
Q 019426          287 EVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       287 ~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      .+       .|++|.+| +|+..
T Consensus       197 ~~-------~piilV~NK~Dl~~  212 (255)
T 3c5h_A          197 TK-------KPIVVVLTKCDEGV  212 (255)
T ss_dssp             TT-------CCEEEEEECGGGBC
T ss_pred             CC-------CCEEEEEEcccccc
Confidence            23       78899998 99863

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.11  E-value=0.0053  Score=52.75  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=46.1

Q ss_pred             ceeEEEecCCccc-cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~-eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ..+.+||+.|+.. ++..|..|+.+++++|+|.|+++          ...+......+..+.....-.+       .|++
T Consensus        56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~~~~~~~~l~~~~~~~~-------~pii  118 (192)
T 2cjw_A           56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTED-------IPII  118 (192)
T ss_dssp             EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSC-------CCEE
T ss_pred             EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCC----------HHHHHHHHHHHHHHHHhhCCCC-------CeEE
Confidence            3567899988866 56667778889999999999997          2444444444443432111112       6889


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       119 lV~NK~Dl~~  128 (192)
T 2cjw_A          119 LVGNKSDLVR  128 (192)
T ss_dssp             EEEECTTCGG
T ss_pred             EEEechhhhc
Confidence            9998 99873

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.11  E-value=0.0071  Score=50.94  Aligned_cols=68  Identities=9%  Similarity=0.023  Sum_probs=45.9

Q ss_pred             ccCCceeEEEecCCccccc------cccccccC--CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          217 KKSGEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR------~kW~~~f~--~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      .+++..+.+||++|+...+      ..|..++.  +++++++|+|.+++++          +   ...+..+..    .+
T Consensus        50 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~---~~~~~~~~~----~~  112 (188)
T 2wjg_A           50 EYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER----------N---LYLTLQLME----MG  112 (188)
T ss_dssp             EETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGHHH----------H---HHHHHHHHT----TT
T ss_pred             EeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhHHH----------H---HHHHHHHHh----cC
Confidence            3456789999999997654      34666774  5899999999987421          1   223333332    12


Q ss_pred             ccccCCceeEEEEec-cCccC
Q 019426          289 FFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~  308 (341)
                             .|+++++| +|+..
T Consensus       113 -------~piilv~nK~Dl~~  126 (188)
T 2wjg_A          113 -------ANLLLALNKMDLAK  126 (188)
T ss_dssp             -------CCEEEEEECHHHHH
T ss_pred             -------CCEEEEEEhhhccc
Confidence                   67888888 99863

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.05  E-value=0.0094  Score=49.55  Aligned_cols=66  Identities=11%  Similarity=0.058  Sum_probs=43.9

Q ss_pred             cCCceeEEEecCCcccccccc------ccccC--CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCc
Q 019426          218 KSGEVYRLFDVGGQRNERRKW------IHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVF  289 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW------~~~f~--~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~  289 (341)
                      +.+..+.+||++|+...+..|      ..++.  +++++++|+|.++++          ++   ...+..+..    .+ 
T Consensus        47 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~----------~~---~~~~~~~~~----~~-  108 (165)
T 2wji_A           47 YNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE----------RN---LYLTLQLME----MG-  108 (165)
T ss_dssp             ETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH----------HH---HHHHHHHHH----TT-
T ss_pred             ECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh----------Hh---HHHHHHHHh----cC-
Confidence            345679999999997655332      45664  899999999998742          11   122333322    13 


Q ss_pred             cccCCceeEEEEec-cCcc
Q 019426          290 FCATSALHITAFVA-CEHV  307 (341)
Q Consensus       290 ~~~~~~~~iilf~n-~d~~  307 (341)
                            .|+++.+| +|+.
T Consensus       109 ------~p~ilv~nK~Dl~  121 (165)
T 2wji_A          109 ------ANLLLALNKMDLA  121 (165)
T ss_dssp             ------CCEEEEEECHHHH
T ss_pred             ------CCEEEEEEchHhc
Confidence                  68899898 9986

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=96.01  E-value=0.0063  Score=63.43  Aligned_cols=70  Identities=10%  Similarity=0.010  Sum_probs=53.9

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+..+.+||++|+...+..|..++..++++|+|+|.++..           ...+...|..+...    +       .
T Consensus        73 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-----------~~~t~~~~~~~~~~----~-------~  130 (691)
T 1dar_A           73 FWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-----------EPQSETVWRQAEKY----K-------V  130 (691)
T ss_dssp             EETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-----------CHHHHHHHHHHHHT----T-------C
T ss_pred             EECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc-----------chhhHHHHHHHHHc----C-------C
Confidence            456789999999999888888999999999999999998742           23344555544321    3       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++++| +|+..
T Consensus       131 p~ivviNKiD~~~  143 (691)
T 1dar_A          131 PRIAFANKMDKTG  143 (691)
T ss_dssp             CEEEEEECTTSTT
T ss_pred             CEEEEEECCCccc
Confidence            8899998 99974

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.98  E-value=0.0093  Score=51.83  Aligned_cols=70  Identities=11%  Similarity=0.221  Sum_probs=43.2

Q ss_pred             cCCceeEEEecCCccc----------cccccccccCC---ccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426          218 KSGEVYRLFDVGGQRN----------ERRKWIHLFEG---VSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  284 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~----------eR~kW~~~f~~---v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~  284 (341)
                      ..+..+.+||++|...          .+..+..++.+   ++++|||+|.++-.         .  .....+++.+..  
T Consensus        76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---------~--~~~~~~~~~l~~--  142 (223)
T 4dhe_A           76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPL---------T--ELDRRMIEWFAP--  142 (223)
T ss_dssp             TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC---------C--HHHHHHHHHHGG--
T ss_pred             CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCC---------C--HHHHHHHHHHHh--
Confidence            4567899999999532          13334455544   78899999988620         1  112333333322  


Q ss_pred             cccCccccCCceeEEEEec-cCccCc
Q 019426          285 CFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       285 ~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                        .+       .|+++.+| +|++..
T Consensus       143 --~~-------~p~i~v~nK~Dl~~~  159 (223)
T 4dhe_A          143 --TG-------KPIHSLLTKCDKLTR  159 (223)
T ss_dssp             --GC-------CCEEEEEECGGGSCH
T ss_pred             --cC-------CCEEEEEeccccCCh
Confidence              22       67888888 999843

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=95.96  E-value=0.0085  Score=58.98  Aligned_cols=50  Identities=12%  Similarity=0.179  Sum_probs=41.9

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .|..+....|      ...+..+.+||++|++...+.+..++..++++|+|||.++
T Consensus        81 iTid~~~~~~------~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~  130 (439)
T 3j2k_7           81 KTVEVGRAYF------ETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARK  130 (439)
T ss_pred             ceEEEeEEEE------ecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCC
Confidence            3444445556      5667899999999999999999999999999999999986

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.95  E-value=0.0062  Score=59.76  Aligned_cols=40  Identities=15%  Similarity=0.285  Sum_probs=32.9

Q ss_pred             ccCCceeEEEecCCccc---------cccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRN---------ERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~---------eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+.+..+.+||.||+..         .+..|..+++++++||||+|.++
T Consensus        45 ~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~   93 (439)
T 1mky_A           45 EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR   93 (439)
T ss_dssp             EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT
T ss_pred             EECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence            45667899999999753         25678889999999999999864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.92  E-value=0.017  Score=53.86  Aligned_cols=69  Identities=10%  Similarity=0.118  Sum_probs=47.5

Q ss_pred             cC-CceeEEEecCCccccc----------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426          218 KS-GEVYRLFDVGGQRNER----------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  286 (341)
Q Consensus       218 ~~-~~~~~l~DvgGqr~eR----------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f  286 (341)
                      .. +..+.+||+.|+...+          ..|..++.+++++|||+|.++-.           -.+....|-..+..   
T Consensus        55 ~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~-----------~~~~~~~~~~~l~~---  120 (308)
T 3iev_A           55 IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW-----------RPRDEEIYQNFIKP---  120 (308)
T ss_dssp             ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS-----------CHHHHHHHHHHTGG---
T ss_pred             cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC-----------CchhHHHHHHHHHh---
Confidence            44 6789999999995443          56677889999999999998631           11223332222222   


Q ss_pred             cCccccCCceeEEEEec-cCcc
Q 019426          287 EVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       287 ~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      .+       .|+++++| +|++
T Consensus       121 ~~-------~pvilV~NK~Dl~  135 (308)
T 3iev_A          121 LN-------KPVIVVINKIDKI  135 (308)
T ss_dssp             GC-------CCEEEEEECGGGS
T ss_pred             cC-------CCEEEEEECccCC
Confidence            23       68899998 9998

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=95.89  E-value=0.0087  Score=59.22  Aligned_cols=40  Identities=15%  Similarity=0.086  Sum_probs=36.0

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+..+.+||+.|+....+.+..++..++++|+|+|.++
T Consensus        81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~  120 (458)
T 1f60_A           81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV  120 (458)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred             ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence            4556789999999999888999999999999999999885

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.86  E-value=0.0031  Score=53.67  Aligned_cols=18  Identities=44%  Similarity=0.661  Sum_probs=16.5

Q ss_pred             ceEEeccCCCcchhHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQ   66 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq   66 (341)
                      -++|+|++||||||++|.
T Consensus        11 i~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            478999999999999995

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=95.84  E-value=0.0071  Score=59.38  Aligned_cols=40  Identities=15%  Similarity=0.234  Sum_probs=36.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+..+.+||+.|+....+.|..++..++++|+|+|.++
T Consensus        80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~  119 (435)
T 1jny_A           80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK  119 (435)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC
Confidence            5667889999999999999999999999999999999986

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=95.83  E-value=0.015  Score=58.07  Aligned_cols=73  Identities=11%  Similarity=0.163  Sum_probs=42.6

Q ss_pred             ccCCceeEEEecCCccccccc--------cccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRK--------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~k--------W~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      .+++..+.+||+.|++..+..        ...++.+++++|||+|.++-..       ...+.+-..+++.+-      +
T Consensus       277 ~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~~~~~~l~~l~------~  343 (476)
T 3gee_A          277 IHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERL-------DDELTEIRELKAAHP------A  343 (476)
T ss_dssp             EETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSS-------GGGHHHHHHHHHHCT------T
T ss_pred             EECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcc-------hhhhHHHHHHHHhcC------C
Confidence            567789999999999765433        3557899999999999997421       112334444444332      3


Q ss_pred             ccccCCceeEEEEec-cCccCc
Q 019426          289 FFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~~  309 (341)
                             .|+++..| +|+...
T Consensus       344 -------~piIvV~NK~Dl~~~  358 (476)
T 3gee_A          344 -------AKFLTVANKLDRAAN  358 (476)
T ss_dssp             -------SEEEEEEECTTSCTT
T ss_pred             -------CCEEEEEECcCCCCc
Confidence                   68888888 999843

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=95.80  E-value=0.0035  Score=54.10  Aligned_cols=23  Identities=30%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ++.|+|++||||||++|.+--+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999876443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.79  E-value=0.0034  Score=53.55  Aligned_cols=23  Identities=48%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++|+|++||||||++|.+.-..
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            58999999999999999986443

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=95.79  E-value=0.007  Score=60.08  Aligned_cols=51  Identities=14%  Similarity=0.156  Sum_probs=28.2

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..|.++....|      ..++..+.+||+.|+....+.+...+..++++|+|+|.++
T Consensus       106 giTi~~~~~~~------~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~  156 (467)
T 1r5b_A          106 GKTVEVGRAYF------ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARR  156 (467)
T ss_dssp             -------CCEE------ECSSEEEEECCCCC-----------TTSCSEEEEEEECST
T ss_pred             CceEEeeeEEE------ecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCc
Confidence            34444444455      5567889999999999888999999999999999999886

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=95.75  E-value=0.01  Score=61.93  Aligned_cols=70  Identities=9%  Similarity=0.038  Sum_probs=53.7

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+..+.+||+.|+......|..++..++++|+|+|.++-.           .......+..+...    +       .
T Consensus        71 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~-----------~~~~~~~~~~~~~~----~-------~  128 (693)
T 2xex_A           71 AWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV-----------EPQTETVWRQATTY----G-------V  128 (693)
T ss_dssp             EETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBS-----------CHHHHHHHHHHHHT----T-------C
T ss_pred             EECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCC-----------cHHHHHHHHHHHHc----C-------C
Confidence            456788999999999888888999999999999999998631           23344555544331    3       6


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++++| +|+..
T Consensus       129 p~ilviNK~Dl~~  141 (693)
T 2xex_A          129 PRIVFVNKMDKLG  141 (693)
T ss_dssp             CEEEEEECTTSTT
T ss_pred             CEEEEEECCCccc
Confidence            8899998 99974

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.75  E-value=0.0044  Score=54.02  Aligned_cols=24  Identities=29%  Similarity=0.459  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+.|+|++||||||+++.+.-++
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            378999999999999999986554

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.73  E-value=0.013  Score=53.70  Aligned_cols=68  Identities=12%  Similarity=0.033  Sum_probs=45.7

Q ss_pred             ccCCceeEEEecCCccccc----------ccccccc--CCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc
Q 019426          217 KKSGEVYRLFDVGGQRNER----------RKWIHLF--EGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP  284 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR----------~kW~~~f--~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~  284 (341)
                      ...+..+.+||++|+...+          ..|.+|+  .+++++|+|+|.++.             +..+.+...+... 
T Consensus        46 ~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~-------------~~~~~~~~~l~~~-  111 (274)
T 3i8s_A           46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL-------------ERNLYLTLQLLEL-  111 (274)
T ss_dssp             ECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH-------------HHHHHHHHHHHHH-
T ss_pred             EeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh-------------HHHHHHHHHHHhc-
Confidence            4566789999999987655          2244443  799999999999863             1223333333221 


Q ss_pred             cccCccccCCceeEEEEec-cCccC
Q 019426          285 CFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       285 ~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                         +       .|+++.+| +|+..
T Consensus       112 ---~-------~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A          112 ---G-------IPCIVALNMLDIAE  126 (274)
T ss_dssp             ---T-------CCEEEEEECHHHHH
T ss_pred             ---C-------CCEEEEEECccchh
Confidence               3       68888888 99873

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.72  E-value=0.008  Score=50.58  Aligned_cols=40  Identities=23%  Similarity=0.413  Sum_probs=29.5

Q ss_pred             ccCCceeEEEecCCccccc---------cccccccCCccEEEEEeeccCc
Q 019426          217 KKSGEVYRLFDVGGQRNER---------RKWIHLFEGVSAVIFCAAISEY  257 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR---------~kW~~~f~~v~~IIFvvslSdy  257 (341)
                      .+++..+.+||..|++...         +.| .++.+++++|+|+|.++.
T Consensus        48 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~~   96 (172)
T 2gj8_A           48 HIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTTT   96 (172)
T ss_dssp             EETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTTC
T ss_pred             EECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCCC
Confidence            3456678999999986421         123 357899999999999874

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.72  E-value=0.0039  Score=53.71  Aligned_cols=23  Identities=9%  Similarity=0.333  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||+++.+.-++
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            57899999999999999986543

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=95.69  E-value=0.0041  Score=53.17  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+.-.+
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999876544

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.65  E-value=0.0044  Score=52.59  Aligned_cols=22  Identities=36%  Similarity=0.637  Sum_probs=19.3

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+|++|+|.+|+|||||++++.
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~   23 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLM   23 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHh
Confidence            4799999999999999999754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.65  E-value=0.0042  Score=53.32  Aligned_cols=36  Identities=14%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      +.+.+||.+|++..+..|..++.+++++++|+|+++
T Consensus        78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~  113 (191)
T 1oix_A           78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK  113 (191)
T ss_dssp             EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC
T ss_pred             EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC
Confidence            456789999998888899999999999999999886

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.60  E-value=0.0054  Score=53.60  Aligned_cols=26  Identities=35%  Similarity=0.325  Sum_probs=21.9

Q ss_pred             cccceEEeccCCCcchhHHHHHHhhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .-..+.|+|++||||||+++.+.-++
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34578999999999999999887554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.54  E-value=0.0086  Score=59.04  Aligned_cols=70  Identities=16%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             ccCCceeEEEecCC--------ccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          217 KKSGEVYRLFDVGG--------QRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       217 ~~~~~~~~l~DvgG--------qr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      .+.+..+.+||.+|        +...+..|..+++++++||||+|..+-            +...-..+..++..   .+
T Consensus        67 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~------------~~~~d~~l~~~l~~---~~  131 (456)
T 4dcu_A           67 EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG------------VTAADEEVAKILYR---TK  131 (456)
T ss_dssp             TTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC------------SCHHHHHHHHHHTT---CC
T ss_pred             EECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC------------CChHHHHHHHHHHH---cC
Confidence            45677899999999        777788899999999999999996641            11112222233332   23


Q ss_pred             ccccCCceeEEEEec-cCccC
Q 019426          289 FFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~  308 (341)
                             .|++|.+| +|...
T Consensus       132 -------~pvilV~NK~D~~~  145 (456)
T 4dcu_A          132 -------KPVVLAVNKLDNTE  145 (456)
T ss_dssp             -------SCEEEEEECC----
T ss_pred             -------CCEEEEEECccchh
Confidence                   68899998 99873

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.54  E-value=0.015  Score=49.21  Aligned_cols=67  Identities=9%  Similarity=0.136  Sum_probs=43.7

Q ss_pred             eeEEEecCC----------ccccccccccccCCc---cEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          222 VYRLFDVGG----------QRNERRKWIHLFEGV---SAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       222 ~~~l~DvgG----------qr~eR~kW~~~f~~v---~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      .+.+||++|          +...+..|..++.+.   +++|||+|.++...          . +...+++.+..    .+
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------~-~~~~~~~~~~~----~~  134 (195)
T 1svi_A           70 ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS----------N-DDVQMYEFLKY----YG  134 (195)
T ss_dssp             TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC----------H-HHHHHHHHHHH----TT
T ss_pred             cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC----------H-HHHHHHHHHHH----cC
Confidence            689999999          555566677777665   99999999886211          1 11222332221    22


Q ss_pred             ccccCCceeEEEEec-cCccCcc
Q 019426          289 FFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                             .|+++.+| +|+....
T Consensus       135 -------~p~i~v~nK~Dl~~~~  150 (195)
T 1svi_A          135 -------IPVIVIATKADKIPKG  150 (195)
T ss_dssp             -------CCEEEEEECGGGSCGG
T ss_pred             -------CCEEEEEECcccCChH
Confidence                   67888888 9998543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.54  E-value=0.0051  Score=52.89  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.5

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+|++|+|++|+|||||++.+.
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~   26 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFT   26 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHh
Confidence            35799999999999999999865

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.53  E-value=0.024  Score=48.47  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.4

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+|++|+|++|+|||||++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l   49 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRF   49 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHH
T ss_pred             cceEEEEECcCCCCHHHHHHHH
Confidence            4589999999999999999853

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.49  E-value=0.017  Score=53.11  Aligned_cols=64  Identities=6%  Similarity=0.044  Sum_probs=44.7

Q ss_pred             CceeEEEecCCccccc------cccccccC--CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccc
Q 019426          220 GEVYRLFDVGGQRNER------RKWIHLFE--GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFC  291 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR------~kW~~~f~--~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~  291 (341)
                      +..+.+||++|+.+.+      ..|..|+.  +++++|+|+|.++.             +..+.+...+..    .+   
T Consensus        48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~-------------e~~~~~~~~l~~----~~---  107 (272)
T 3b1v_A           48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL-------------ERNLYLTTQLIE----TG---  107 (272)
T ss_dssp             CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH-------------HHHHHHHHHHHH----TC---
T ss_pred             CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch-------------HhHHHHHHHHHh----cC---
Confidence            6789999999997765      34556664  69999999999863             112333334432    13   


Q ss_pred             cCCceeEEEEec-cCcc
Q 019426          292 ATSALHITAFVA-CEHV  307 (341)
Q Consensus       292 ~~~~~~iilf~n-~d~~  307 (341)
                          .|+++.+| +|+.
T Consensus       108 ----~p~ilv~NK~Dl~  120 (272)
T 3b1v_A          108 ----IPVTIALNMIDVL  120 (272)
T ss_dssp             ----SCEEEEEECHHHH
T ss_pred             ----CCEEEEEEChhhC
Confidence                68888888 9986

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.46  E-value=0.0052  Score=52.94  Aligned_cols=23  Identities=35%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ...+||+++|.+++|||||++++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l   43 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTF   43 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHT
T ss_pred             CcEEEEEEECCCCCCHHHHHHHH
Confidence            45689999999999999999986

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.46  E-value=0.0057  Score=51.27  Aligned_cols=24  Identities=33%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|+|+|++||||||+++.+.-..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999987654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.44  E-value=0.0057  Score=53.44  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            57899999999999999886544

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.43  E-value=0.027  Score=52.57  Aligned_cols=72  Identities=8%  Similarity=0.031  Sum_probs=46.9

Q ss_pred             cCCceeEEEecCCcccc--------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCc
Q 019426          218 KSGEVYRLFDVGGQRNE--------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVF  289 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~e--------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~  289 (341)
                      ..+..+.+||++|+...        +..+..++.++++++||+|.++-.         ...  ...+++.+-..  ..+ 
T Consensus        52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~---------~~~--~~~i~~~l~~~--~~~-  117 (301)
T 1wf3_A           52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP---------TPE--DELVARALKPL--VGK-  117 (301)
T ss_dssp             ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC---------CHH--HHHHHHHHGGG--TTT-
T ss_pred             eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCC---------ChH--HHHHHHHHHhh--cCC-
Confidence            34678999999998753        334556789999999999998631         111  12222333221  112 


Q ss_pred             cccCCceeEEEEec-cCccCc
Q 019426          290 FCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       290 ~~~~~~~~iilf~n-~d~~~~  309 (341)
                            .|+++++| +|+...
T Consensus       118 ------~p~ilV~NK~Dl~~~  132 (301)
T 1wf3_A          118 ------VPILLVGNKLDAAKY  132 (301)
T ss_dssp             ------SCEEEEEECGGGCSS
T ss_pred             ------CCEEEEEECcccCCc
Confidence                  78999999 999843

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.008  Score=50.92  Aligned_cols=24  Identities=17%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ....||+++|.+|+||||+++++.
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~   69 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            456899999999999999999763

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.41  E-value=0.0062  Score=50.04  Aligned_cols=21  Identities=43%  Similarity=0.618  Sum_probs=19.3

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+||+++|.+++|||||++++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l   22 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIF   22 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHH
Confidence            479999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.32  E-value=0.0067  Score=51.84  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=18.4

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -++|+|++||||||++|.+.-
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            368999999999999999853

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.31  E-value=0.0068  Score=51.03  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..|++++|.+|+|||||++++.
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~   28 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALT   28 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4799999999999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.31  E-value=0.007  Score=50.38  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.8

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..|++++|.+++|||||++++.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~   24 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALT   24 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4699999999999999999874

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.31  E-value=0.0076  Score=52.34  Aligned_cols=25  Identities=20%  Similarity=0.260  Sum_probs=21.4

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      ..+.|+|++||||||++|.+.-++.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999876653

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=95.27  E-value=0.021  Score=59.61  Aligned_cols=66  Identities=9%  Similarity=0.051  Sum_probs=49.9

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||+.|+...+.-|..++..++++|+|+|.++-.           ...+...+..+..    .+       .|+++
T Consensus        82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-----------~~qt~~~~~~~~~----~~-------ip~il  139 (704)
T 2rdo_7           82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV-----------QPQSETVWRQANK----YK-------VPRIA  139 (704)
T ss_pred             eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCC-----------cHHHHHHHHHHHH----cC-------CCEEE
Confidence            78999999999877788888999999999999998631           2233445544322    13       68889


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       140 viNKiD~~~  148 (704)
T 2rdo_7          140 FVNKMDRMG  148 (704)
T ss_pred             EEeCCCccc
Confidence            998 99874

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.27  E-value=0.013  Score=53.35  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHH
Q 019426           32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        32 ~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+.+.+++-.+.....++|+++|.+|+|||||++.+
T Consensus        24 ~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l   59 (270)
T 1h65_A           24 KLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSI   59 (270)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            444444443333345789999999999999998864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.25  E-value=0.0069  Score=54.55  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999887544

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.24  E-value=0.0076  Score=51.85  Aligned_cols=23  Identities=30%  Similarity=0.252  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+.-.+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            68899999999999999987554

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.21  E-value=0.0076  Score=49.82  Aligned_cols=19  Identities=37%  Similarity=0.480  Sum_probs=17.8

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      -|+|.|++||||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999998

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.17  E-value=0.008  Score=50.93  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++|||||||+|.+--+.
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999876443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.16  E-value=0.0086  Score=53.00  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=20.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++||||||+++.+.-++
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            368999999999999999886554

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.16  E-value=0.0087  Score=49.75  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .|+|.|++||||||+.+.+.-.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.13  E-value=0.0081  Score=52.07  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .-++|+|++||||||++|.+.-.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999998543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.13  E-value=0.0082  Score=49.86  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=20.5

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +.+||+++|.+++|||||++++.
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~   27 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFA   27 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHH
Confidence            46899999999999999999764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=95.12  E-value=0.016  Score=58.71  Aligned_cols=67  Identities=18%  Similarity=0.207  Sum_probs=51.7

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +..+.+||++|+...+..|..++..++++|+|+|.++           ..+..+++.+..+...    +       .|++
T Consensus        51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d-----------g~~~qt~e~l~~~~~~----~-------vPiI  108 (537)
T 3izy_P           51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD-----------GVMKQTVESIQHAKDA----H-------VPIV  108 (537)
T ss_dssp             SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS-----------CCCHHHHHHHHHHHTT----T-------CCEE
T ss_pred             CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC-----------CccHHHHHHHHHHHHc----C-------CcEE
Confidence            3467899999999999999999999999999999886           2344555555544432    2       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       109 VViNKiDl~~  118 (537)
T 3izy_P          109 LAINKCDKAE  118 (537)
T ss_dssp             ECCBSGGGTT
T ss_pred             EEEecccccc
Confidence            8888 99873

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.11  E-value=0.0081  Score=53.57  Aligned_cols=24  Identities=13%  Similarity=0.213  Sum_probs=20.4

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      --+.|+|++|||||||+|.+.-..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            368899999999999999876554

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=95.11  E-value=0.025  Score=56.53  Aligned_cols=68  Identities=16%  Similarity=0.291  Sum_probs=46.3

Q ss_pred             ccCCceeEEEecCCcc-ccc--------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcccc
Q 019426          217 KKSGEVYRLFDVGGQR-NER--------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE  287 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr-~eR--------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~  287 (341)
                      .+++..+.+||+.|++ ...        +.+..++.+++++|||+|.++-..          . +..++++.+      .
T Consensus       287 ~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s----------~-~~~~il~~l------~  349 (482)
T 1xzp_A          287 VIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD----------E-EDRKILERI------K  349 (482)
T ss_dssp             EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC----------H-HHHHHHHHH------T
T ss_pred             ecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC----------H-HHHHHHHHh------c
Confidence            4567889999999997 322        234457889999999999986311          1 123333332      2


Q ss_pred             CccccCCceeEEEEec-cCccC
Q 019426          288 VFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       288 ~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      +       .|+++.+| +|+..
T Consensus       350 ~-------~piivV~NK~DL~~  364 (482)
T 1xzp_A          350 N-------KRYLVVINKVDVVE  364 (482)
T ss_dssp             T-------SSEEEEEEECSSCC
T ss_pred             C-------CCEEEEEECccccc
Confidence            3       67888888 99974

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=95.09  E-value=0.016  Score=61.68  Aligned_cols=66  Identities=9%  Similarity=0.096  Sum_probs=50.9

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +..+.+||+.|+...+..|..++..++++|+|+|.++-.           ..++...+..+...    +       .|++
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~-----------~~qt~~~~~~~~~~----~-------~p~i  154 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV-----------CVQTETVLRQALGE----R-------IKPV  154 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS-----------CHHHHHHHHHHHHT----T-------CEEE
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC-----------CHHHHHHHHHHHHc----C-------CCeE
Confidence            567999999999988889999999999999999998632           12334455544321    3       6889


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +++| +|+.
T Consensus       155 lviNK~D~~  163 (842)
T 1n0u_A          155 VVINKVDRA  163 (842)
T ss_dssp             EEEECHHHH
T ss_pred             EEEECCCcc
Confidence            9998 9986

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.08  E-value=0.0084  Score=53.71  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..++|+|++||||||++|.+.-
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999863

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.08  E-value=0.0082  Score=52.38  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=19.1

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -+.|+|++||||||+++++-.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.06  E-value=0.0094  Score=49.94  Aligned_cols=21  Identities=33%  Similarity=0.407  Sum_probs=18.8

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -|+|.|.+||||||+++.+.-
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            478999999999999998865

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.05  E-value=0.0084  Score=53.56  Aligned_cols=23  Identities=39%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999886544

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.05  E-value=0.0085  Score=55.17  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+.|+|++||||||+++.+--+.
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999887554

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.03  E-value=0.012  Score=51.61  Aligned_cols=23  Identities=22%  Similarity=0.196  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||+++.+.-.+
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            47899999999999999986554

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=95.02  E-value=0.014  Score=58.57  Aligned_cols=70  Identities=11%  Similarity=0.092  Sum_probs=49.9

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||++|+...+..|......++++|+|+|.++--           +..+++.+..+..    .+       .
T Consensus        47 ~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~-----------~~qT~e~l~~~~~----~~-------v  104 (501)
T 1zo1_I           47 ETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGV-----------MPQTIEAIQHAKA----AQ-------V  104 (501)
T ss_dssp             CTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBS-----------CTTTHHHHHHHHH----TT-------C
T ss_pred             EECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCc-----------cHHHHHHHHHHHh----cC-------c
Confidence            445667899999999998999999999999999999987621           1122222222211    23       6


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++++| +|+..
T Consensus       105 PiIVviNKiDl~~  117 (501)
T 1zo1_I          105 PVVVAVNKIDKPE  117 (501)
T ss_dssp             CEEEEEECSSSST
T ss_pred             eEEEEEEeccccc
Confidence            8899999 99973

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.02  E-value=0.0096  Score=53.83  Aligned_cols=27  Identities=33%  Similarity=0.409  Sum_probs=21.8

Q ss_pred             hcccceEEeccCCCcchhHHHHHHhhh
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .....++|.|++||||||+++.+.-.+
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            334578999999999999999986433

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.01  E-value=0.022  Score=49.71  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.0

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+..|++++|.+|+||||++.++-
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~   59 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLI   59 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Confidence            456899999999999999998764

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=94.99  E-value=0.014  Score=58.14  Aligned_cols=70  Identities=13%  Similarity=0.076  Sum_probs=50.0

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.+||+.|+....+.+..++..++++|+|+|.++-           .+.++.+.+..+-.    .+       .
T Consensus        69 ~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~~~----~~-------i  126 (482)
T 1wb1_A           69 KLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLILDH----FN-------I  126 (482)
T ss_dssp             EETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHHHH----TT-------C
T ss_pred             EECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC-----------ccHHHHHHHHHHHH----cC-------C
Confidence            34567899999999988888999999999999999998862           12333333332211    12       5


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+++++| +|+..
T Consensus       127 p~IvviNK~Dl~~  139 (482)
T 1wb1_A          127 PIIVVITKSDNAG  139 (482)
T ss_dssp             CBCEEEECTTSSC
T ss_pred             CEEEEEECCCccc
Confidence            6677778 99984

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.99  E-value=0.01  Score=49.93  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -|+|.|.+||||||+.+.+.-..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            47899999999999999987543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.97  E-value=0.021  Score=51.32  Aligned_cols=28  Identities=32%  Similarity=0.312  Sum_probs=22.9

Q ss_pred             hhcccceEEeccCCCcchhHHHHHHhhh
Q 019426           44 EKHIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        44 ~~~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+...|+|.|+.||||||+.+.+.--+
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456789999999999999999986433

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=94.97  E-value=0.0098  Score=50.04  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .++|+|++||||||+++.+.-.
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            5899999999999999987643

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.96  E-value=0.0097  Score=51.57  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=19.8

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      -.-+.|+|++||||||+++.+.-
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.96  E-value=0.01  Score=49.44  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+.+||+++|.+++|||||++++.
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~   29 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYT   29 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            356899999999999999998653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=94.96  E-value=0.0089  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +.+||+++|.+++|||||++++.
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~   28 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFL   28 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999999999763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.95  E-value=0.0099  Score=49.22  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +.+||+++|..++|||||++++.
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~   35 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFM   35 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.93  E-value=0.01  Score=49.66  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+.+||+++|..++|||||++.+.
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~   39 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFF   39 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            356899999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.91  E-value=0.012  Score=51.59  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|.|.|++||||||+++.+.-.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999987544

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.91  E-value=0.01  Score=52.52  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999987644

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=94.90  E-value=0.046  Score=55.94  Aligned_cols=66  Identities=11%  Similarity=-0.045  Sum_probs=50.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||+.|+...+..|..++..++++|+|+|.++=           -+..+.+.+..+..    .+       .|+++
T Consensus        70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-----------v~~qT~e~l~~l~~----~~-------vPiIV  127 (594)
T 1g7s_A           70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YR-------TPFVV  127 (594)
T ss_dssp             CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-----------CCHHHHHHHHHHHH----TT-------CCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-----------ccHhHHHHHHHHHH----cC-------CeEEE
Confidence            3589999999988888888889999999999999861           23445555543322    23       78999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       128 ViNKiDl~~  136 (594)
T 1g7s_A          128 AANKIDRIH  136 (594)
T ss_dssp             EEECGGGST
T ss_pred             Eeccccccc
Confidence            999 99974

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.88  E-value=0.01  Score=53.72  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999987544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.87  E-value=0.011  Score=51.05  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=19.9

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|+|.|.+||||||+++.+.-.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.87  E-value=0.01  Score=52.76  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999886544

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.86  E-value=0.01  Score=53.42  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999886443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.86  E-value=0.011  Score=49.19  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ...+||+++|..++|||||++++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l   30 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRF   30 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHH
Confidence            45689999999999999999875

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.85  E-value=0.011  Score=49.83  Aligned_cols=23  Identities=35%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+||+++|..++|||||++.+.
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~   28 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLT   28 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999999999754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.84  E-value=0.01  Score=54.85  Aligned_cols=23  Identities=30%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999987544

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.84  E-value=0.011  Score=51.27  Aligned_cols=25  Identities=16%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             hhcccceEEeccCCCcchhHHHHHH
Q 019426           44 EKHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        44 ~~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+..||+++|.+|+|||||++++.
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~   33 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLT   33 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHh
Confidence            3456899999999999999999764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.84  E-value=0.011  Score=56.43  Aligned_cols=27  Identities=30%  Similarity=0.584  Sum_probs=23.2

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhhcC
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLFQT   73 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~~~   73 (341)
                      .-++.|+|++|||||||+|.+.-++..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            358999999999999999998877643

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=94.81  E-value=0.012  Score=48.17  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=18.5

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+++|.+++|||||++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l   20 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKL   20 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999876

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.80  E-value=0.011  Score=53.92  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999886444

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.79  E-value=0.011  Score=54.13  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999886544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.79  E-value=0.011  Score=53.62  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999987554

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.034  Score=57.11  Aligned_cols=40  Identities=18%  Similarity=0.249  Sum_probs=36.6

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+..+.+||++|++...+.+..++.+++++|+|||.++
T Consensus       241 ~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~  280 (611)
T 3izq_1          241 STHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST  280 (611)
T ss_dssp             ECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred             ecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence            4567889999999999999999999999999999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.78  E-value=0.011  Score=53.28  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999987554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=94.78  E-value=0.012  Score=51.11  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .-++|.|++||||||+.+.+.-.
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999987643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.77  E-value=0.012  Score=49.73  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=21.4

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ++.+||+++|..++|||||++++.
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            567899999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=94.76  E-value=0.012  Score=49.89  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +..||+++|..++|||||++++-
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~   44 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999999763

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.75  E-value=0.012  Score=49.45  Aligned_cols=20  Identities=25%  Similarity=0.552  Sum_probs=18.3

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+++|.+++|||||++++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l   21 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRL   21 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            58999999999999998864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=94.73  E-value=0.012  Score=49.45  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...|++|+|.+++|||||++++.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~   25 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALA   25 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34699999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.73  E-value=0.012  Score=53.20  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999987554

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.72  E-value=0.013  Score=49.91  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.5

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+.+||+++|.+++|||||++++.
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~   42 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFL   42 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHH
Confidence            456899999999999999998753

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.70  E-value=0.012  Score=54.10  Aligned_cols=23  Identities=22%  Similarity=0.483  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999987544

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.69  E-value=0.012  Score=52.65  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999886443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.69  E-value=0.012  Score=53.38  Aligned_cols=22  Identities=32%  Similarity=0.259  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=94.69  E-value=0.03  Score=57.39  Aligned_cols=67  Identities=6%  Similarity=0.010  Sum_probs=50.6

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      +..+.+||+.|+......|..++..++++|+|+|.++-.+           ..++..+.....    .+       .|++
T Consensus        70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-----------~qt~~~~~~~~~----~~-------ipiI  127 (599)
T 3cb4_D           70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-----------AQTLANCYTAME----MD-------LEVV  127 (599)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-----------THHHHHHHHHHH----TT-------CEEE
T ss_pred             eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----CC-------CCEE
Confidence            3678999999998888889999999999999999986321           233444444332    23       6899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +++| +|+..
T Consensus       128 vViNKiDl~~  137 (599)
T 3cb4_D          128 PVLNKIDLPA  137 (599)
T ss_dssp             EEEECTTSTT
T ss_pred             EeeeccCccc
Confidence            9999 99974

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.68  E-value=0.013  Score=50.19  Aligned_cols=22  Identities=41%  Similarity=0.551  Sum_probs=18.6

Q ss_pred             hcccceEEeccCCCcchhHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQ   66 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq   66 (341)
                      ++.+||+++|.+++|||||++.
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~   39 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKV   39 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHH
Confidence            4568999999999999999884

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.67  E-value=0.01  Score=52.54  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=14.4

Q ss_pred             ceEEeccCCCcchhHHHHHH-hhh
Q 019426           49 KLLLLGAGESGKSTIFKQIK-LLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~-~~~   71 (341)
                      -+.|+|++||||||+++.+. -++
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            57899999999999999886 443

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.67  E-value=0.012  Score=53.71  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999886543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.67  E-value=0.013  Score=50.54  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      +|.|.|+.||||||+++.+.-
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.63  E-value=0.013  Score=53.39  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999886544

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.63  E-value=0.013  Score=50.03  Aligned_cols=23  Identities=30%  Similarity=0.632  Sum_probs=20.7

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ++.+||+++|.+++|||||++++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l   49 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKL   49 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHH
Confidence            45689999999999999999976

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.60  E-value=0.013  Score=53.80  Aligned_cols=23  Identities=35%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            57899999999999999886544

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.59  E-value=0.013  Score=53.92  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--++
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987554

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.58  E-value=0.014  Score=49.10  Aligned_cols=23  Identities=39%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ...+||+++|.+++|||||++.+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l   34 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWI   34 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHH
Confidence            35689999999999999998644

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=94.58  E-value=0.014  Score=50.81  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      +|+|.|+.||||||+++.+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999843

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=94.57  E-value=0.014  Score=50.51  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|+|+|++||||||+.+.+.-..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            478999999999999999986443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=94.56  E-value=0.034  Score=45.67  Aligned_cols=40  Identities=15%  Similarity=0.114  Sum_probs=27.8

Q ss_pred             cHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHh
Q 019426           30 TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        30 s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      |..+.+.++.-+.......-+||.|+.|+|||++++.+.-
T Consensus         7 s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A            7 SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             SHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHH
Confidence            3444444444344445556799999999999999997643

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.55  E-value=0.015  Score=49.08  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .|+|.|++||||||+.+.+.-.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6899999999999999998643

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.55  E-value=0.015  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..|+|.|+.||||||+.+.+.-
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999863

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.55  E-value=0.014  Score=53.43  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhccC
Confidence            68999999999999999986554

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=94.55  E-value=0.025  Score=53.86  Aligned_cols=74  Identities=5%  Similarity=0.054  Sum_probs=45.7

Q ss_pred             ceeEEEecCCccc-------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcC-ccccCcccc
Q 019426          221 EVYRLFDVGGQRN-------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEVFFCA  292 (341)
Q Consensus       221 ~~~~l~DvgGqr~-------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~-~~f~~~~~~  292 (341)
                      ..+.+||+.|+..       ....|....+.++++|||+|+++++.       .+-+++...+.+.+... +.+.+    
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~-------~~~~~~~~~~~~eL~~~~~~l~~----  274 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEG-------RDPYDDYLTINQELSEYNLRLTE----  274 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSC-------CCHHHHHHHHHHHHHHSCSSTTT----
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccc-------cChHHHHHHHHHHHHHhhhhhcC----
Confidence            6899999999632       22333334456999999999997420       12233333344444332 22334    


Q ss_pred             CCceeEEEEec-cCccC
Q 019426          293 TSALHITAFVA-CEHVS  308 (341)
Q Consensus       293 ~~~~~iilf~n-~d~~~  308 (341)
                         .|++|.+| +|++.
T Consensus       275 ---~p~ilV~NK~Dl~~  288 (342)
T 1lnz_A          275 ---RPQIIVANKMDMPE  288 (342)
T ss_dssp             ---SCBCBEEECTTSTT
T ss_pred             ---CCEEEEEECccCCC
Confidence               78888888 99984

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.54  E-value=0.014  Score=53.16  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988644

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.49  E-value=0.014  Score=53.44  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999986544

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.49  E-value=0.015  Score=49.28  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .-++|.|++|+||||+++.+--.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.47  E-value=0.016  Score=49.03  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .|+|.|+.||||||+.+.+.-.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=94.46  E-value=0.04  Score=56.51  Aligned_cols=66  Identities=14%  Similarity=0.048  Sum_probs=50.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||+.|+......|..++..++++|+|+|.++-.           ..+++..+.....    .+       .|+++
T Consensus        73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv-----------~~qt~~~~~~a~~----~~-------ipiIv  130 (600)
T 2ywe_A           73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGI-----------EAQTVANFWKAVE----QD-------LVIIP  130 (600)
T ss_dssp             EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBC-----------CHHHHHHHHHHHH----TT-------CEEEE
T ss_pred             EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCc-----------cHHHHHHHHHHHH----CC-------CCEEE
Confidence            57889999999888888999999999999999998631           2344555544432    23       68999


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      ++| +|+..
T Consensus       131 viNKiDl~~  139 (600)
T 2ywe_A          131 VINKIDLPS  139 (600)
T ss_dssp             EEECTTSTT
T ss_pred             EEeccCccc
Confidence            999 99974

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.46  E-value=0.015  Score=53.43  Aligned_cols=22  Identities=27%  Similarity=0.295  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988754

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=94.45  E-value=0.016  Score=52.00  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+.|+|++||||||++|.+.-+.
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999886543

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.44  E-value=0.016  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.221  Sum_probs=19.1

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .+.|+|+.||||||+.+.+.-
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999875

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.43  E-value=0.015  Score=53.83  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999886443

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.41  E-value=0.016  Score=50.50  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.9

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      +|+|.|+.||||||+++.+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.41  E-value=0.012  Score=50.64  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ...+++|+|.+|+|||||++.+
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l   46 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTL   46 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHH
Confidence            4468999999999999999864

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.40  E-value=0.018  Score=52.75  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.++|+|++||||||+++.+--++
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHHhC
Confidence            368999999999999999886544

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.38  E-value=0.017  Score=48.74  Aligned_cols=23  Identities=13%  Similarity=0.060  Sum_probs=20.0

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|+|.|++||||||+.+.+.-.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998753

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=94.34  E-value=0.018  Score=49.21  Aligned_cols=21  Identities=38%  Similarity=0.521  Sum_probs=19.1

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .|+|.|..||||||+.+.+.-
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.32  E-value=0.016  Score=53.12  Aligned_cols=22  Identities=41%  Similarity=0.729  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6789999999999999988643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.28  E-value=0.018  Score=48.76  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|+|.|++||||||+.+.+.-.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998643

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.26  E-value=0.019  Score=54.02  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=21.2

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      .-+.|+|++||||||++|.+.-+..
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHHhhcc
Confidence            3588999999999999999876653

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.25  E-value=0.019  Score=50.03  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ++.|+|++||||||+++.+--+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            6899999999999999976533

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.23  E-value=0.016  Score=54.11  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      -.++|+|+|++|+|||||++.+-
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~   39 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLF   39 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHh
Confidence            34799999999999999999853

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=94.23  E-value=0.028  Score=52.30  Aligned_cols=27  Identities=30%  Similarity=0.155  Sum_probs=22.3

Q ss_pred             hcccceEEeccCCCcchhHHHHHHhhh
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ++...|.|.|++||||||+++.+.-++
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l   55 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHL   55 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344678999999999999999887555

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=94.23  E-value=0.083  Score=51.79  Aligned_cols=65  Identities=11%  Similarity=0.059  Sum_probs=43.4

Q ss_pred             eeEEEecCCccccc-------cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCC
Q 019426          222 VYRLFDVGGQRNER-------RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATS  294 (341)
Q Consensus       222 ~~~l~DvgGqr~eR-------~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~  294 (341)
                      .+.+||+.|+....       .++..++.+++++|+|+|.+.          .....+-+   ..+...    +      
T Consensus        84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~----------~~~~~~~l---~~l~~~----~------  140 (423)
T 3qq5_A           84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP----------TPYEDDVV---NLFKEM----E------  140 (423)
T ss_dssp             EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC----------CHHHHHHH---HHHHHT----T------
T ss_pred             eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC----------hHHHHHHH---HHHHhc----C------
Confidence            89999999986433       336678999999999999832          11222222   222221    3      


Q ss_pred             ceeEEEEec-cCccCcc
Q 019426          295 ALHITAFVA-CEHVSGM  310 (341)
Q Consensus       295 ~~~iilf~n-~d~~~~~  310 (341)
                       .|+++.+| +|+....
T Consensus       141 -~piIvV~NK~Dl~~~~  156 (423)
T 3qq5_A          141 -IPFVVVVNKIDVLGEK  156 (423)
T ss_dssp             -CCEEEECCCCTTTTCC
T ss_pred             -CCEEEEEeCcCCCCcc
Confidence             68899998 9998544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.22  E-value=0.023  Score=53.47  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=21.4

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+.|+|++|||||||++.+--++
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhc
Confidence            378999999999999999987666

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=94.21  E-value=0.019  Score=49.27  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+||+|+|.+++|||||++++.
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~   27 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFA   27 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999998753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.20  E-value=0.019  Score=48.65  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=19.9

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .-|+|.|.+||||||+.+.+.-.
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998643

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=94.19  E-value=0.021  Score=49.82  Aligned_cols=19  Identities=32%  Similarity=0.646  Sum_probs=17.4

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      |+|.||+||||+||++.+.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~   22 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLF   22 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999875

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.17  E-value=0.014  Score=48.93  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=11.8

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+||+++|..++|||||++++.
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~   29 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFS   29 (183)
T ss_dssp             EEEEEEEECCCCC----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.15  E-value=0.02  Score=48.45  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.0

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ....||+++|..++|||||++++
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l   37 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQV   37 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHH
Confidence            45679999999999999999975

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.11  E-value=0.022  Score=48.24  Aligned_cols=23  Identities=39%  Similarity=0.485  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .|+|.|..||||||+.+.+.-.+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999986543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.10  E-value=0.021  Score=48.23  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=19.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|+|.|..||||||+.+.+.-.
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999987643

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=94.10  E-value=0.057  Score=52.20  Aligned_cols=69  Identities=14%  Similarity=0.042  Sum_probs=49.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||+.|+....+.+..++..++++|+|+|.++-          ..+....+.+..+-.   +.       ..|+++
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~----------~~~~qt~~~~~~~~~---~~-------~~~iiv  134 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP----------FPQPQTREHFVALGI---IG-------VKNLII  134 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSC----------SSCHHHHHHHHHHHH---HT-------CCCEEE
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC----------CCcHHHHHHHHHHHH---cC-------CCCEEE
Confidence            4689999999999999999999999999999998862          113333333322211   11       157888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|++..
T Consensus       135 viNK~Dl~~~  144 (403)
T 3sjy_A          135 VQNKVDVVSK  144 (403)
T ss_dssp             EEECGGGSCH
T ss_pred             EEECccccch
Confidence            888 999743

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=94.08  E-value=0.021  Score=50.66  Aligned_cols=22  Identities=27%  Similarity=0.530  Sum_probs=19.3

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      +.+||+|||.+++|||+|+.++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~   33 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRF   33 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHH
T ss_pred             CcEEEEEECcCCcCHHHHHHHH
Confidence            4579999999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.05  E-value=0.021  Score=49.62  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.7

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -++|+|++||||||+++++-.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999863

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=94.05  E-value=0.026  Score=48.07  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ...|+|.|+.||||||+.+.+.-.+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999986543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.03  E-value=0.023  Score=47.20  Aligned_cols=22  Identities=32%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      +|+|.|..||||||+.+.+.-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.01  E-value=0.019  Score=49.44  Aligned_cols=24  Identities=25%  Similarity=0.511  Sum_probs=21.3

Q ss_pred             hhcccceEEeccCCCcchhHHHHH
Q 019426           44 EKHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        44 ~~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ....+||+++|..++|||||++++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l   49 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRF   49 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHH
T ss_pred             cccceEEEEECcCCCCHHHHHHHH
Confidence            456789999999999999999975

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.99  E-value=0.016  Score=54.54  Aligned_cols=23  Identities=35%  Similarity=0.613  Sum_probs=20.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--++
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCchHHHHHHHHHcCC
Confidence            58999999999999999987666

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.97  E-value=0.024  Score=47.90  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|+|.|.+||||||+.+.+.-.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHH
Confidence            46899999999999999988643

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.95  E-value=0.021  Score=55.00  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -+.|+|++||||||++|.+--+
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4789999999999999998743

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=93.94  E-value=0.024  Score=49.60  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=21.2

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -..|+|.|..||||||+.+.+.-.+
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4579999999999999999986543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=93.94  E-value=0.021  Score=53.18  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999886443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=93.94  E-value=0.021  Score=48.35  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+||+++|..++|||||++++.
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~   39 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYA   39 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999998754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=93.93  E-value=0.022  Score=51.46  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..|.|+|++||||||++|.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999885

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.90  E-value=0.024  Score=48.63  Aligned_cols=23  Identities=26%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|+|.|..||||||+++.+.-.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999998753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=93.90  E-value=0.023  Score=50.00  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++|+|++|||||||++.+.-.+
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            57899999999999999875444

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.86  E-value=0.019  Score=51.35  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=18.6

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      |+|+|+.||||+|.++.+.--|
T Consensus        32 I~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5679999999999999886544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.86  E-value=0.024  Score=49.05  Aligned_cols=24  Identities=25%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+.|.|++||||||+++.+.-.+
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            468899999999999999887543

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.86  E-value=0.026  Score=47.04  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .|+|.|..||||||+.+.+.-.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.83  E-value=0.024  Score=51.39  Aligned_cols=20  Identities=35%  Similarity=0.393  Sum_probs=17.8

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -++|.|++||||||+.+++.
T Consensus         3 li~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            36899999999999999875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=93.82  E-value=0.025  Score=49.36  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+|.|+.||||||+++.+.--+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999986544

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.82  E-value=0.023  Score=54.54  Aligned_cols=22  Identities=45%  Similarity=0.558  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -+.|+|++||||||++|.+--+
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.81  E-value=0.028  Score=47.75  Aligned_cols=26  Identities=23%  Similarity=0.390  Sum_probs=21.5

Q ss_pred             cccceEEeccCCCcchhHHHHHHhhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +...|+|.|..||||||+.+.+.-.+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999986433

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.79  E-value=0.027  Score=48.11  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|+|.|..||||||+.+.+.-.
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999988654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.77  E-value=0.024  Score=54.51  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999987443

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.74  E-value=0.026  Score=48.94  Aligned_cols=23  Identities=30%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ...+.|.|++||||||+++.+.-
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998753

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=93.72  E-value=0.043  Score=60.36  Aligned_cols=40  Identities=15%  Similarity=0.207  Sum_probs=36.2

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+..+.+||+.|+....+.+..++..++++|+|+|.++
T Consensus       355 ~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtd  394 (1289)
T 3avx_A          355 DTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATD  394 (1289)
T ss_dssp             ECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTT
T ss_pred             cCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            4567899999999999888888889999999999999986

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=93.72  E-value=0.026  Score=48.60  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+||+++|.+++|||||++++.
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~   30 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYT   30 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999999998753

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.70  E-value=0.026  Score=52.21  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=19.7

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..-++|.|++||||||+++.+.-
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998854

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.67  E-value=0.025  Score=54.81  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999987443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.66  E-value=0.029  Score=47.44  Aligned_cols=21  Identities=29%  Similarity=0.290  Sum_probs=18.7

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .|+|.|..||||||+.+.+.-
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.66  E-value=0.025  Score=47.64  Aligned_cols=22  Identities=14%  Similarity=0.135  Sum_probs=15.3

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..|+|.|..||||||+.+.+.-
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.66  E-value=0.026  Score=54.36  Aligned_cols=22  Identities=41%  Similarity=0.519  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -+.|+|++||||||++|.+--+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4789999999999999998644

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.64  E-value=0.026  Score=54.51  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -+.|+|++||||||++|.+--+
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            4789999999999999998643

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.64  E-value=0.029  Score=47.36  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .|+|.|..||||||+.+.+.-.
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988643

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.63  E-value=0.031  Score=47.18  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.+|+|++||||||+++.+..+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999876543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.63  E-value=0.026  Score=54.51  Aligned_cols=23  Identities=39%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999987443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.62  E-value=0.064  Score=49.93  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+.|+|++||||||+++.+.-+.
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l  104 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999987654

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=93.62  E-value=0.02  Score=49.13  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||+++.+--++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999887655

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.61  E-value=0.056  Score=44.26  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ....-+||.|+.|+|||++++.+.
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~   48 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFH   48 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGC
T ss_pred             CCCCcEEEECCCCccHHHHHHHHH
Confidence            445679999999999999999764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=93.60  E-value=0.019  Score=48.08  Aligned_cols=37  Identities=14%  Similarity=0.300  Sum_probs=27.0

Q ss_pred             eeEEEecCC-----------ccccccccccccCC----ccEEEEEeeccCcc
Q 019426          222 VYRLFDVGG-----------QRNERRKWIHLFEG----VSAVIFCAAISEYD  258 (341)
Q Consensus       222 ~~~l~DvgG-----------qr~eR~kW~~~f~~----v~~IIFvvslSdyd  258 (341)
                      .+.+||++|           +...+..|..++.+    +..+++|+|.+.|+
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~   96 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAP   96 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHH
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhh
Confidence            689999999           55566677777654    55777778777653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.57  E-value=0.029  Score=54.12  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999999987554

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=93.55  E-value=0.028  Score=49.48  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...+||+|+|.+++|||||++++.
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~   58 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFA   58 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999998753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=93.55  E-value=0.029  Score=48.47  Aligned_cols=21  Identities=33%  Similarity=0.305  Sum_probs=18.9

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -++|.|++||||||+++++-.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999854

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.53  E-value=0.043  Score=52.47  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=20.9

Q ss_pred             hhcccceEEeccCCCcchhHHHHH
Q 019426           44 EKHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        44 ~~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ....++|+|+|.+|+|||||++.+
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L   57 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSL   57 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHH
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHH
Confidence            345689999999999999999975

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=93.50  E-value=0.032  Score=47.10  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=19.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|.|.|..||||||+++.+.-.
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999988643

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.48  E-value=0.031  Score=48.96  Aligned_cols=24  Identities=38%  Similarity=0.487  Sum_probs=20.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|+|.|+.||||||+.+.+.--+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999986443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.47  E-value=0.033  Score=46.42  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=19.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -|+|.|..||||||+.+.+.-.
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.43  E-value=0.061  Score=51.60  Aligned_cols=76  Identities=14%  Similarity=0.024  Sum_probs=43.9

Q ss_pred             cCCceeEEEecCCcccc---------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccC
Q 019426          218 KSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEV  288 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~e---------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~  288 (341)
                      +.+..+.+||..|+...         +..| ..+..++.+++|+|.++-+         ....+.+..+..++..-...+
T Consensus       223 ~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~---------~~~~~~~~~~~~~L~~l~~~~  292 (364)
T 2qtf_A          223 INNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSE---------NLLIETLQSSFEILREIGVSG  292 (364)
T ss_dssp             ETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCH---------HHHHHHHHHHHHHHHHHTCCS
T ss_pred             ECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCc---------chHHHHHHHHHHHHHHhCcCC
Confidence            34456788999887322         1222 2467889999999998631         112233333333332111123


Q ss_pred             ccccCCceeEEEEec-cCccCcc
Q 019426          289 FFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                             .|+++..| +|+++.+
T Consensus       293 -------~p~ilV~NK~Dl~~~~  308 (364)
T 2qtf_A          293 -------KPILVTLNKIDKINGD  308 (364)
T ss_dssp             -------CCEEEEEECGGGCCSC
T ss_pred             -------CCEEEEEECCCCCCch
Confidence                   67788787 9998654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.43  E-value=0.034  Score=47.91  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ...|+|.|+.||||||+.+.+.-.+
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999986543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.42  E-value=0.076  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+..+++++|.+|+||||++..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l   50 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERT   50 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHH
Confidence            45679999999999999998865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=93.42  E-value=0.022  Score=54.46  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            57899999999999999987443

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=93.41  E-value=0.032  Score=47.65  Aligned_cols=24  Identities=25%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             ccceEEeccCCCcchhHHHHHHhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ...|.|.|..||||||+.+.+.-.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            357899999999999999998765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=93.40  E-value=0.032  Score=49.10  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..|+|.|..||||||+++.+.-
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.34  E-value=0.032  Score=47.74  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..|.|.|..||||||+.+.+.-.
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999988654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.34  E-value=0.034  Score=47.96  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ...|+|.|..||||||+.+.+.-
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=93.34  E-value=0.14  Score=49.03  Aligned_cols=12  Identities=8%  Similarity=-0.014  Sum_probs=8.4

Q ss_pred             CceeEEEecCCc
Q 019426          220 GEVYRLFDVGGQ  231 (341)
Q Consensus       220 ~~~~~l~DvgGq  231 (341)
                      +.-+.++|+...
T Consensus       259 D~il~VvD~s~~  270 (364)
T 2qtf_A          259 DALILVIDSTFS  270 (364)
T ss_dssp             SEEEEEEETTSC
T ss_pred             CEEEEEEECCCC
Confidence            456778898654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=93.32  E-value=0.033  Score=48.40  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=17.6

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      +|++|+++|||||++.|+-
T Consensus         2 ilV~Gg~~SGKS~~A~~la   20 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALI   20 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7999999999999999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.32  E-value=0.036  Score=52.42  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|.|++||||||+++.+..+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll  116 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALL  116 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999887554

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=93.30  E-value=0.021  Score=49.29  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=18.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -|++.|.+||||||+++.+.-.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999987543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=93.29  E-value=0.035  Score=47.86  Aligned_cols=22  Identities=32%  Similarity=0.302  Sum_probs=19.7

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..|+|.|..||||||+.+.+.-
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=93.28  E-value=0.033  Score=48.61  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...+||+++|..++|||||++++.
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~   34 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFT   34 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHH
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHh
Confidence            456899999999999999998753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=93.25  E-value=0.022  Score=49.41  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.8

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      +..||+++|..++|||||++.+
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l   49 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVL   49 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHH
Confidence            4579999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.21  E-value=0.036  Score=47.08  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=18.9

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-|+|.|.+||||||+++.+.
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHH
Confidence            468999999999999999885

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=93.20  E-value=0.038  Score=51.74  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      --++|+|++||||||+++.+-.++
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            368899999999999999887655

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=93.19  E-value=0.11  Score=50.20  Aligned_cols=69  Identities=14%  Similarity=0.020  Sum_probs=47.9

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||+.|+....+.+......++++|+|+|.++-          -.+.++++.+..+-   .+.       ..|+++
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g----------~~~~qt~e~l~~~~---~l~-------~~~iiv  140 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP----------CPQPQTKEHLMALE---ILG-------IDKIII  140 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC----------SSCHHHHHHHHHHH---HTT-------CCCEEE
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC----------CCCchhHHHHHHHH---HcC-------CCeEEE
Confidence            4689999999988888888888889999999999862          11333333333221   111       257888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|+...
T Consensus       141 v~NK~Dl~~~  150 (408)
T 1s0u_A          141 VQNKIDLVDE  150 (408)
T ss_dssp             EEECTTSSCT
T ss_pred             EEEccCCCCH
Confidence            888 999843

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.18  E-value=0.04  Score=47.34  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|+|.|+.||||||+.+.+.-.+
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999886433

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.18  E-value=0.034  Score=53.30  Aligned_cols=20  Identities=35%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -++++|++||||||+++.+-
T Consensus       125 ~i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.16  E-value=0.022  Score=54.53  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -+.|+|++||||||++|.+--+
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=93.13  E-value=0.035  Score=50.42  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=20.6

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +.+||+|+|.+++|||||++++-
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~   26 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALT   26 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.13  E-value=0.044  Score=48.33  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .|+|+|+.||||+|.++.+.--|
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999887555

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=93.10  E-value=0.037  Score=48.57  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -++|+|++||||||+++++-.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.08  E-value=0.036  Score=54.37  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      .++|+|+|++|+|||||++.+--
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g   53 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFL   53 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEEECCCCCcHHHHHHHHhC
Confidence            35789999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.08  E-value=0.035  Score=53.96  Aligned_cols=22  Identities=41%  Similarity=0.520  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++||||||++|.+--+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999998644

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=93.01  E-value=0.041  Score=47.98  Aligned_cols=22  Identities=32%  Similarity=0.244  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      .-|.|.|..||||||+++.+.-
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.00  E-value=0.042  Score=49.36  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=20.5

Q ss_pred             cccceEEeccCCCcchhHHHHHHh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      +...|.|.|+.||||||+.+.+.-
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=92.99  E-value=0.043  Score=52.50  Aligned_cols=24  Identities=25%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.++|+|++||||||+++.+--++
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            479999999999999999987555

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=92.96  E-value=0.038  Score=50.72  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++|+|++|||||||++++-...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999987543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=92.95  E-value=0.04  Score=50.61  Aligned_cols=22  Identities=32%  Similarity=0.694  Sum_probs=20.1

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..||+|+|.+++|||||++++-
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~   24 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLIT   24 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999999975

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=92.95  E-value=0.065  Score=46.62  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..-|+|.|..||||||+++.+.-
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999998864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=92.93  E-value=0.041  Score=45.78  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=19.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -++|+|++|+||||+++.+--.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999987543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.93  E-value=0.045  Score=51.72  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.++|+|++||||||+++.+--++
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            378999999999999999987655

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=92.90  E-value=0.044  Score=48.33  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .|+|.|+.||||||+.+.+.-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999886433

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=92.87  E-value=0.043  Score=49.68  Aligned_cols=22  Identities=32%  Similarity=0.366  Sum_probs=19.4

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      .-|+|.|.+||||||+++.+.-
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            3689999999999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.87  E-value=0.041  Score=54.11  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=18.7

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .++.|+|++|||||||++.+-
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~   63 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLF   63 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            359999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.84  E-value=0.035  Score=49.21  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .-+.|.|+.||||||+++.+.-.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999987654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=92.83  E-value=0.088  Score=49.44  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      --++|.|++|+||||+++.+--.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999988643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=92.80  E-value=0.043  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .++|+|++|+||||++|.+.-.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999988643

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=92.76  E-value=0.044  Score=48.96  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .++|+|++|+||||+++.+--..
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999886543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.74  E-value=0.041  Score=54.54  Aligned_cols=26  Identities=12%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             cccceEEeccCCCcchhHHHHHHhhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .--.++|+|++||||||++|.+--+.
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            33489999999999999999886443

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=92.72  E-value=0.052  Score=47.51  Aligned_cols=24  Identities=42%  Similarity=0.562  Sum_probs=20.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|+|.|..||||||+.+.+.-.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999986543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.69  E-value=0.044  Score=49.95  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -++|+|++|||||||++++-..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999998743

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=92.68  E-value=0.06  Score=44.61  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.4

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-++|.|+.|+||||+++.+.
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~   64 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHH
Confidence            458999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=92.67  E-value=0.049  Score=47.44  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=22.6

Q ss_pred             hcccceEEeccCCCcchhHHHHHHhhh
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+..-|.|.|..||||||+.+.+.-.+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence            345678999999999999999987653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=92.60  E-value=0.053  Score=50.66  Aligned_cols=23  Identities=17%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++|+|++||||||+++.+--++
T Consensus       102 vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A          102 VIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            58899999999999999887554

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=92.54  E-value=0.024  Score=57.97  Aligned_cols=40  Identities=15%  Similarity=0.190  Sum_probs=23.5

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+..+.+||+.|+....+.+..++..++++|+|||.++
T Consensus       251 ~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~  290 (592)
T 3mca_A          251 ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ  290 (592)
T ss_dssp             --------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred             EeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence            5566789999999999999999999999999999999985

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=92.50  E-value=0.056  Score=51.95  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .++|+|++||||||+++.+--++
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68999999999999999886544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.45  E-value=0.053  Score=49.66  Aligned_cols=21  Identities=33%  Similarity=0.407  Sum_probs=18.8

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -|+|.|.+||||||+.+.+.-
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=92.41  E-value=0.18  Score=52.17  Aligned_cols=69  Identities=13%  Similarity=0.030  Sum_probs=50.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ...+..+.+||..|+...+..|..++..++++++|+|.++-.           ......++..+...    +       .
T Consensus        70 ~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~-----------~~qt~~~~~~~~~~----~-------i  127 (665)
T 2dy1_A           70 LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV-----------QVGTERAWTVAERL----G-------L  127 (665)
T ss_dssp             EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-----------CHHHHHHHHHHHHT----T-------C
T ss_pred             eeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc-----------chhHHHHHHHHHHc----c-------C
Confidence            345678999999999888888999999999999999976521           12233444444321    3       6


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++++| +|+.
T Consensus       128 p~ilv~NKiD~~  139 (665)
T 2dy1_A          128 PRMVVVTKLDKG  139 (665)
T ss_dssp             CEEEEEECGGGC
T ss_pred             CEEEEecCCchh
Confidence            7888998 9986

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.31  E-value=0.055  Score=49.20  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      -.|.|+|.+||||||+.+.+.-
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.30  E-value=0.052  Score=53.17  Aligned_cols=21  Identities=33%  Similarity=0.284  Sum_probs=18.7

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -++|+|++||||||+++.+--
T Consensus       169 ii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998753

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=92.20  E-value=0.066  Score=44.41  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..-++|.|+.|+||||+++.+.-
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998753

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=92.17  E-value=0.06  Score=48.55  Aligned_cols=24  Identities=17%  Similarity=0.223  Sum_probs=20.6

Q ss_pred             ccceEEeccCCCcchhHHHHHHhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ...+.|.|++||||||+++.+.-.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988643

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=92.12  E-value=0.065  Score=45.88  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .|.|.|+.||||||+.+.+.-..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            57899999999999999986543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=92.07  E-value=0.06  Score=48.94  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .++|+|++|+||||+++.+--..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCcChHHHHHHHHHHHc
Confidence            38999999999999999886544

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.99  E-value=0.07  Score=44.32  Aligned_cols=19  Identities=37%  Similarity=0.620  Sum_probs=16.9

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      .+|+|++||||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5899999999999988765

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=91.96  E-value=0.06  Score=51.38  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=21.1

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++.|+|++|+||||++++|--+.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            489999999999999999987554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=91.95  E-value=0.13  Score=50.23  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=21.0

Q ss_pred             cccceEEeccCCCcchhHHHHHHhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ...-+.|+|++||||||+++.+.-+
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCC
Confidence            3447899999999999999988654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=91.93  E-value=0.064  Score=50.22  Aligned_cols=23  Identities=30%  Similarity=0.325  Sum_probs=19.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      --++|+|..||||||++|.+--.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999998744

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=91.90  E-value=0.072  Score=50.41  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .-++|+|++||||||+++.+--++
T Consensus       130 ~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          130 YVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999886544

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=91.90  E-value=0.064  Score=49.82  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.++|++||||||+++.+.-+.
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999886443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=91.85  E-value=0.065  Score=49.87  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.++|++|+||||+++.+. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57899999999999999988 54

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=91.85  E-value=0.065  Score=48.97  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=20.0

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .++|+++|..++|||||++++-
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~   24 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLT   24 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh
Confidence            4799999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=91.84  E-value=0.072  Score=47.15  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -..|+|.|..||||||+.+.+.-.+
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999986544

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=91.81  E-value=0.071  Score=49.02  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..|.|.|+.||||||+.+.+.-
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.73  E-value=0.063  Score=53.79  Aligned_cols=19  Identities=26%  Similarity=0.363  Sum_probs=17.6

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      -++|+|++|||||||++++
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            5899999999999999994

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=91.71  E-value=0.068  Score=48.48  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=19.0

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .||+|+|.+++|||||++++-
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~   22 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALT   22 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999874

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=91.69  E-value=0.074  Score=45.66  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=17.7

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-+++.|.+||||||+++.+-
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~   27 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLI   27 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            357899999999999988753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=91.69  E-value=0.068  Score=54.33  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=21.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      ++.|+|++||||||++|.+--++.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhhccC
Confidence            689999999999999999876653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=91.68  E-value=0.076  Score=53.21  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=19.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++|+|++||||||+++.|-.++
T Consensus       295 VI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          295 VILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcccHHHHHHHHHHHh
Confidence            58899999999999999876543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=91.66  E-value=0.068  Score=54.31  Aligned_cols=24  Identities=33%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      ++.|+|++||||||++|.+--++.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFYD  394 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            689999999999999999876663

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.60  E-value=0.068  Score=53.95  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999987554

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=91.56  E-value=0.074  Score=49.46  Aligned_cols=21  Identities=48%  Similarity=0.580  Sum_probs=19.2

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..||+|+|.+++|||||++++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l   23 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSII   23 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHH
Confidence            469999999999999999985

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=91.54  E-value=0.077  Score=46.03  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...-++|.|+.|+||||+++.+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~   73 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAAC   73 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=91.47  E-value=0.085  Score=50.64  Aligned_cols=23  Identities=17%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++|+|++||||||+++.+--++
T Consensus       159 vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          159 VIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHhhc
Confidence            58899999999999999886554

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=91.45  E-value=0.18  Score=50.07  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             hhcccceEEeccCCCcchhHHHHH
Q 019426           44 EKHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        44 ~~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+..+||+|+|.+++|||||++.+
T Consensus       230 ~r~~~kV~ivG~~nvGKSSLln~L  253 (476)
T 3gee_A          230 VSEGVSTVIAGKPNAGKSTLLNTL  253 (476)
T ss_dssp             HHHCEEEEEECCTTSSHHHHHHHC
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHH
Confidence            456689999999999999999975

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=91.39  E-value=0.073  Score=52.39  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.2

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++.|+|++||||||+++.+--+.
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            489999999999999999987554

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=91.36  E-value=0.075  Score=53.71  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--++
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999987554

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=91.36  E-value=0.087  Score=51.77  Aligned_cols=71  Identities=11%  Similarity=0.102  Sum_probs=45.7

Q ss_pred             ccCCceeEEEecCCcc----------cccccc-ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426          217 KKSGEVYRLFDVGGQR----------NERRKW-IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  285 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr----------~eR~kW-~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~  285 (341)
                      ...+..+.+||..|.+          ..+..+ ..+++.++++|+|+|.++--           ......+...+..   
T Consensus       239 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~-----------~~~~~~~~~~~~~---  304 (456)
T 4dcu_A          239 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI-----------IEQDKRIAGYAHE---  304 (456)
T ss_dssp             EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC-----------CHHHHHHHHHHHH---
T ss_pred             EECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCc-----------CHHHHHHHHHHHH---
Confidence            4566789999999943          333333 34678899999999988610           1222333333332   


Q ss_pred             ccCccccCCceeEEEEec-cCccCc
Q 019426          286 FEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       286 f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                       .+       .|++|.+| +|+..+
T Consensus       305 -~~-------~~~ilv~NK~Dl~~~  321 (456)
T 4dcu_A          305 -AG-------KAVVIVVNKWDAVDK  321 (456)
T ss_dssp             -TT-------CEEEEEEECGGGSCC
T ss_pred             -cC-------CCEEEEEEChhcCCC
Confidence             23       78888898 999843

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=91.34  E-value=0.081  Score=47.28  Aligned_cols=22  Identities=27%  Similarity=0.448  Sum_probs=19.2

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..+||.|++|+||||+++.+.-
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            3589999999999999998753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=91.34  E-value=0.081  Score=50.32  Aligned_cols=35  Identities=11%  Similarity=0.073  Sum_probs=26.0

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+..+.++|..|-+   ..+....+.++.++||+|.+.
T Consensus       165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~  199 (349)
T 2www_A          165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAG  199 (349)
T ss_dssp             TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-
T ss_pred             CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCc
Confidence            46678999998853   235566788999999999876

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=91.30  E-value=0.081  Score=46.40  Aligned_cols=20  Identities=30%  Similarity=0.405  Sum_probs=17.7

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -++|.|++||||||++.|+-
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999988874

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=91.30  E-value=0.26  Score=44.72  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=43.4

Q ss_pred             CceeEEEecCCccc-------------cccccccccCCccEEE-EEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426          220 GEVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVI-FCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  285 (341)
Q Consensus       220 ~~~~~l~DvgGqr~-------------eR~kW~~~f~~v~~II-FvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~  285 (341)
                      ...+.+||+.|+..             .+..+..|+.+.+++| ||+|.++--         . -.+.+.+.+.+-.   
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~---------~-~~~~~~~~~~~~~---  190 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL---------A-NSDALKIAKEVDP---  190 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG---------G-GCHHHHHHHHHCT---
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch---------h-hhHHHHHHHHhCC---
Confidence            46899999999742             2345667888888766 899887510         0 1122334444322   


Q ss_pred             ccCccccCCceeEEEEec-cCccCcc
Q 019426          286 FEVFFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       286 f~~~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                       .+       .|+++.+| +|++...
T Consensus       191 -~~-------~~~i~V~NK~Dl~~~~  208 (299)
T 2aka_B          191 -QG-------QRTIGVITKLDLMDEG  208 (299)
T ss_dssp             -TC-------SSEEEEEECGGGSCTT
T ss_pred             -CC-------CeEEEEEEccccCCCC
Confidence             12       57777777 9998554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=91.29  E-value=0.1  Score=52.16  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||+++.+--+.
T Consensus        31 ~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999987654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=91.26  E-value=0.078  Score=54.12  Aligned_cols=24  Identities=33%  Similarity=0.571  Sum_probs=21.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      ++.|+|++||||||++|.+--++.
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            689999999999999999876663

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=91.12  E-value=0.18  Score=46.25  Aligned_cols=72  Identities=17%  Similarity=0.115  Sum_probs=45.2

Q ss_pred             CCceeEEEecCCccc-------------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426          219 SGEVYRLFDVGGQRN-------------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  285 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~-------------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~  285 (341)
                      .+..+.+||+.|...             .+..+..++.+++++|||+|.+.-+.       .+.  +.+.+.+.+-.   
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-------~~~--~~~~i~~~~~~---  196 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------ANS--DALQLAKEVDP---  196 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-------TTC--SHHHHHHHHCS---
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-------hhh--HHHHHHHHhCC---
Confidence            346899999999853             34456678889999999999864221       011  11233333322   


Q ss_pred             ccCccccCCceeEEEEec-cCccCcc
Q 019426          286 FEVFFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       286 f~~~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                       .+       .|+++.+| +|++...
T Consensus       197 -~~-------~~~i~v~NK~Dl~~~~  214 (315)
T 1jwy_B          197 -EG-------KRTIGVITKLDLMDKG  214 (315)
T ss_dssp             -SC-------SSEEEEEECTTSSCSS
T ss_pred             -CC-------CcEEEEEcCcccCCcc
Confidence             12       67788887 9998544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=91.03  E-value=0.1  Score=51.01  Aligned_cols=71  Identities=11%  Similarity=0.138  Sum_probs=46.2

Q ss_pred             ccCCceeEEEecCCcccccc----------cc-ccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCcc
Q 019426          217 KKSGEVYRLFDVGGQRNERR----------KW-IHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPC  285 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~----------kW-~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~  285 (341)
                      .+.+..+.+||..|++...+          .+ ..++++++++|+|+|.++-.           ..+.+.++..+..   
T Consensus       219 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~-----------s~~~~~~~~~~~~---  284 (436)
T 2hjg_A          219 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGI-----------IEQDKRIAGYAHE---  284 (436)
T ss_dssp             EETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCC-----------CHHHHHHHHHHHH---
T ss_pred             EECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCC-----------cHHHHHHHHHHHH---
Confidence            45677899999999854221          11 24677899999999998621           1122334444432   


Q ss_pred             ccCccccCCceeEEEEec-cCccCc
Q 019426          286 FEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       286 f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                       .+       .|+++.+| +|++.+
T Consensus       285 -~~-------~~iiiv~NK~Dl~~~  301 (436)
T 2hjg_A          285 -AG-------KAVVIVVNKWDAVDK  301 (436)
T ss_dssp             -TT-------CEEEEEEECGGGSCC
T ss_pred             -cC-------CcEEEEEECccCCCc
Confidence             12       68888888 999854

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=91.02  E-value=0.08  Score=49.04  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=16.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .-|.|-|++||||||+.+.+.-.
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999999988753

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=90.99  E-value=0.98  Score=40.65  Aligned_cols=40  Identities=8%  Similarity=0.176  Sum_probs=27.9

Q ss_pred             ccCCceeEEEecCCcccccc-------ccccc--cCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERR-------KWIHL--FEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~-------kW~~~--f~~v~~IIFvvslSd  256 (341)
                      ...+..+.+||+.|+.....       .+..|  ..+++++|||+|++.
T Consensus        83 ~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~  131 (270)
T 1h65_A           83 SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA  131 (270)
T ss_dssp             EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC
T ss_pred             eeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCC
Confidence            45678899999999854321       22222  347999999998865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=90.95  E-value=0.099  Score=46.58  Aligned_cols=25  Identities=20%  Similarity=0.298  Sum_probs=20.5

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -.-|++.|+.||||||+++.+.-.+
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l   50 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRL   50 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999876443

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=90.85  E-value=0.1  Score=46.17  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=20.7

Q ss_pred             cccceEEeccCCCcchhHHHHHHh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      +...|.|.|+.||||||+.+.+.-
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998874

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=90.84  E-value=0.096  Score=47.15  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             hcccceEEeccC---------CCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAG---------ESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~---------eSGKST~~kq~~   68 (341)
                      ...+||+++|.+         ++|||||++++.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~   49 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFV   49 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHH
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHH
Confidence            345899999999         999999999864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=90.79  E-value=0.091  Score=53.92  Aligned_cols=23  Identities=35%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999987554

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=90.79  E-value=0.093  Score=49.93  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++|+|++|||||||++|+-...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=90.78  E-value=0.096  Score=49.58  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.4

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +...+.|+|++||||||+++.+-
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=90.71  E-value=0.074  Score=54.02  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      .+.|+|++||||||++|.+--++.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            688999999999999998876653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=90.67  E-value=0.18  Score=50.61  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++++|+.||||||+++.+--+.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            49999999999999999876443

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=90.67  E-value=0.11  Score=54.87  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -++|+|++||||||++|++-.+
T Consensus       578 i~~I~GpNGsGKSTlLr~iagl  599 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTALI  599 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHhh
Confidence            4789999999999999999754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.67  E-value=0.099  Score=50.18  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++|+|||||++.+.-.
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcc
Confidence            6899999999999999988643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=90.63  E-value=0.26  Score=42.08  Aligned_cols=21  Identities=29%  Similarity=0.388  Sum_probs=18.7

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-++|.|++|+||||+++.+-
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~   75 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIA   75 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            469999999999999998765

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=90.63  E-value=0.22  Score=44.60  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=21.0

Q ss_pred             hcccceEEeccCCCcchhHHHHHHh
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ....-+||.|+.|+|||++++.+.-
T Consensus        27 ~~~~~vll~G~~GtGKt~la~~i~~   51 (265)
T 2bjv_A           27 PLDKPVLIIGERGTGKELIASRLHY   51 (265)
T ss_dssp             TSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHHH
Confidence            3446799999999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=90.57  E-value=0.098  Score=53.65  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68999999999999999987544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=90.55  E-value=0.1  Score=50.96  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.9

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+|+.|+|.+|+|||||++.+-
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~  201 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAIL  201 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHh
Confidence            4799999999999999999864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=90.55  E-value=0.37  Score=43.83  Aligned_cols=20  Identities=20%  Similarity=0.393  Sum_probs=17.8

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -+||.|+.|+||||+++.+.
T Consensus        69 ~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           69 HMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            49999999999999998664

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=90.48  E-value=0.11  Score=55.01  Aligned_cols=22  Identities=36%  Similarity=0.594  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -++|+|++||||||++|++-.+
T Consensus       609 i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          609 MLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            5889999999999999999764

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=90.45  E-value=0.11  Score=56.50  Aligned_cols=22  Identities=41%  Similarity=0.601  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -++|+|++||||||++|++.++
T Consensus       791 i~~ItGpNgsGKSTlLr~iGl~  812 (1022)
T 2o8b_B          791 CVLVTGPNMGGKSTLMRQAGLL  812 (1022)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            5789999999999999999655

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=90.38  E-value=0.2  Score=46.47  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             cccceEEeccCCCcchhHHHHHHhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ...-+||.|+.|+||||+++.+.-.
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHH
Confidence            3457999999999999999988533

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=90.33  E-value=0.047  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=18.9

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      ++|+|++||||||+++.+.-+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhccc
Confidence            4789999999999999887554

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=90.28  E-value=0.11  Score=50.53  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=18.4

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-|+|.|.+||||||+++++.
T Consensus       259 ~lIil~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            457889999999999999875

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=90.25  E-value=0.12  Score=44.21  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=17.5

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+.+.|++||||||++..+-
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~   25 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWV   25 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            357899999999999987654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=90.11  E-value=0.13  Score=43.64  Aligned_cols=20  Identities=25%  Similarity=0.394  Sum_probs=18.1

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      .++|.|++|+||||+++.+.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~   59 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALA   59 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            49999999999999999874

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=90.06  E-value=0.12  Score=55.51  Aligned_cols=20  Identities=30%  Similarity=0.390  Sum_probs=18.3

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -++|+|++||||||++|++.
T Consensus       664 i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          664 FHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48899999999999999984

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=89.99  E-value=0.28  Score=41.82  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=18.0

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -++|.|++|+||||+++.+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~   66 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLA   66 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=89.99  E-value=0.12  Score=49.83  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -++|+|++||||||+++.+.-.
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999987643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=89.98  E-value=0.067  Score=50.25  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+.|+|++|+|||||++.+.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~  194 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAIS  194 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            368999999999999999875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=89.97  E-value=0.13  Score=46.83  Aligned_cols=23  Identities=17%  Similarity=0.536  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...||+++|..++|||||+..+-
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~   47 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHH
Confidence            45699999999999999999864

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=89.85  E-value=0.11  Score=53.05  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=20.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      ++.|+|++||||||++|.+--++.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcc
Confidence            689999999999999998876653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=89.75  E-value=0.13  Score=52.02  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++||||||++|.+--+.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999986443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=89.71  E-value=0.11  Score=55.90  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.8

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -++|+|++||||||++|++..
T Consensus       675 i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          675 VMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             EEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCchHHHHHHHHH
Confidence            478999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=89.69  E-value=0.13  Score=52.79  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .+.|+|++|||||||+|.+--+
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=89.68  E-value=0.16  Score=44.26  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=18.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -.+|+|++||||||++..+...
T Consensus        25 ~~~I~G~NgsGKStil~ai~~~   46 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILVG   46 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHH
Confidence            3589999999999999987743

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=89.54  E-value=0.15  Score=46.48  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=19.9

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..-+||.|++|+||||+++.+.-
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34799999999999999998763

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=89.44  E-value=0.16  Score=47.15  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .++++|++|+||||+++.+-..+
T Consensus       107 vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          107 YIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999876544

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=89.43  E-value=0.15  Score=47.43  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +..+++|+|.+++|||||++++-
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~   28 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLL   28 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHh
Confidence            34689999999999999999874

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=89.41  E-value=0.28  Score=44.97  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.6

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..-+||.|+.|+||||+++.+.
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~   59 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIA   59 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=89.40  E-value=0.14  Score=48.85  Aligned_cols=20  Identities=30%  Similarity=0.625  Sum_probs=18.0

Q ss_pred             eEEeccCCCcchhHHHHHHh
Q 019426           50 LLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~   69 (341)
                      .+|+|++||||||++..+-.
T Consensus        26 ~~i~G~NGaGKTTll~ai~~   45 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAISF   45 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998874

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=89.36  E-value=0.15  Score=50.22  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=20.6

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ....+|+|+|..||||||+.+++.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La   60 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLT   60 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999985

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=89.35  E-value=0.15  Score=45.94  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-+||.|++|+||||+++.+.
T Consensus        52 ~~~ll~G~~GtGKT~la~~la   72 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVA   72 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            459999999999999999885

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=89.33  E-value=0.14  Score=51.60  Aligned_cols=23  Identities=22%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+.|+|++|||||||+|.+--+.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999986443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=89.15  E-value=0.13  Score=52.73  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+.|+|++||||||+++.+--+.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            469999999999999999876443

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=89.13  E-value=0.15  Score=49.58  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=18.0

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -++|+|++|||||||++|+-
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            38899999999999999875

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=89.09  E-value=0.23  Score=47.10  Aligned_cols=37  Identities=11%  Similarity=0.036  Sum_probs=26.6

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCc
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEY  257 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdy  257 (341)
                      ..+..+.++|..|-+.   -.......++.+|||+|.+..
T Consensus       169 ~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~  205 (355)
T 3p32_A          169 AAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTG  205 (355)
T ss_dssp             HTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTT
T ss_pred             hCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCC
Confidence            3567889999999533   233345789999999997653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=88.98  E-value=0.17  Score=46.68  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+||.|++|+||||+++.+.-..
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCcCHHHHHHHHHHHh
Confidence            59999999999999999876443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=88.96  E-value=0.16  Score=52.18  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.3

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      +.|+|++|||||||+|.+--+.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            6899999999999999987554

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=88.96  E-value=0.17  Score=44.85  Aligned_cols=22  Identities=32%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      .-+||.|++|+||||+++.+.-
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=88.76  E-value=0.2  Score=46.88  Aligned_cols=23  Identities=22%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++++|++||||||+++.+-..+
T Consensus       106 vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          106 VIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHHHH
Confidence            48899999999999999886544

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=88.73  E-value=0.13  Score=52.28  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..+.|+|.+||||||++|.+.-.
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHh
Confidence            46899999999999999998643

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.71  E-value=0.16  Score=47.36  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHh-hh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL-LF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~-~~   71 (341)
                      .+++.|++|+||||+++.+.- ++
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            399999999999999998865 44

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=88.58  E-value=0.37  Score=43.32  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=19.6

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..-+||.|+.|+||||+++.+.-
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34699999999999999998753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=88.52  E-value=0.1  Score=50.16  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      .+.|+|++||||||+++.+..+..
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999876653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=88.49  E-value=0.18  Score=47.96  Aligned_cols=21  Identities=19%  Similarity=0.422  Sum_probs=18.2

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -|+|.|++||||||+.+.+.-
T Consensus         9 lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCcCcHHHHHHHHHH
Confidence            478999999999999987753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=88.46  E-value=0.16  Score=45.81  Aligned_cols=25  Identities=36%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             cccceEEeccCCCcchhHHHHHHhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      +..-|++.|..||||||+++.+.-.
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4457899999999999999987643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=88.44  E-value=0.19  Score=46.47  Aligned_cols=22  Identities=14%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      .-++|.|++|+||||+++.+.-
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998753

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=88.44  E-value=0.18  Score=48.86  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=20.9

Q ss_pred             cccceEEeccCCCcchhHHHHHHh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ...++.|+|.+++||||+++.+--
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            346899999999999999998864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=88.40  E-value=0.38  Score=50.01  Aligned_cols=67  Identities=13%  Similarity=0.190  Sum_probs=44.9

Q ss_pred             ceeEEEecCCccc---cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          221 EVYRLFDVGGQRN---ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       221 ~~~~l~DvgGqr~---eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      ..+.+||+.|...   ....+..++.++++||||+|.+.-.           -...+..+...+...   +       .|
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~-----------s~~e~~~l~~~l~~~---~-------~~  232 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC-----------TLGERRYLENYIKGR---G-------LT  232 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT-----------CHHHHHHHHHHTTTS---C-------CC
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc-----------chhHHHHHHHHHHhh---C-------CC
Confidence            4699999999754   3456778899999999999987521           112233444333311   2       56


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++.+| +|++.
T Consensus       233 iiiVlNK~Dl~~  244 (695)
T 2j69_A          233 VFFLVNAWDQVR  244 (695)
T ss_dssp             EEEEEECGGGGG
T ss_pred             EEEEEECccccc
Confidence            788888 99874

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=88.38  E-value=0.2  Score=48.19  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.7

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .++.|+|.+++|||||++.+-
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~   22 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALT   22 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999998764

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=88.37  E-value=0.36  Score=44.70  Aligned_cols=28  Identities=14%  Similarity=0.267  Sum_probs=22.5

Q ss_pred             HHhhcccceEEeccCCCcchhHHHHHHh
Q 019426           42 KAEKHIQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        42 ~~~~~~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      +......-+||.|++|+|||++++.+.-
T Consensus        20 ~~a~~~~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A           20 MVAPSDATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             HHCSTTSCEEEESCTTSCHHHHHHHHHH
T ss_pred             HHhCCCCcEEEECCCCchHHHHHHHHHH
Confidence            3334556899999999999999998764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=88.34  E-value=0.19  Score=47.59  Aligned_cols=71  Identities=10%  Similarity=0.003  Sum_probs=46.3

Q ss_pred             CceeEEEecCCcccc-------------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426          220 GEVYRLFDVGGQRNE-------------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  286 (341)
Q Consensus       220 ~~~~~l~DvgGqr~e-------------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f  286 (341)
                      ...+.+||+.|+...             +.....|+.++++||+|++.+.-+.       .+  .+.+.+...+...   
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~-------~~--~~~~~l~~~~~~~---  202 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL-------AT--SDAIKISREVDPS---  202 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG-------GG--CHHHHHHHHSCTT---
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc-------CC--HHHHHHHHHhccc---
Confidence            457999999998654             4556678899999999998765321       11  3345555554321   


Q ss_pred             cCccccCCceeEEEEec-cCccCcc
Q 019426          287 EVFFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       287 ~~~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                       +       .|+++.+| +|++..+
T Consensus       203 -~-------~~~i~V~nK~Dl~~~~  219 (360)
T 3t34_A          203 -G-------DRTFGVLTKIDLMDKG  219 (360)
T ss_dssp             -C-------TTEEEEEECGGGCCTT
T ss_pred             -C-------CCEEEEEeCCccCCCc
Confidence             2       35666666 9998543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=88.24  E-value=0.15  Score=52.69  Aligned_cols=19  Identities=32%  Similarity=0.515  Sum_probs=16.7

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      .+.|+|++||||||+++.+
T Consensus       350 ~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          350 FVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             EEEEECSTTSSHHHHHTTT
T ss_pred             EEEEEeeCCCCHHHHHHHH
Confidence            4789999999999999754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=88.20  E-value=0.2  Score=47.48  Aligned_cols=19  Identities=42%  Similarity=0.683  Sum_probs=17.1

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      ||+|+|.+|+|||++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~   19 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVV   19 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHH
Confidence            7999999999999999753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=88.17  E-value=0.22  Score=43.11  Aligned_cols=24  Identities=33%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|.|.|+.||||||+.+.+.-.+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            468999999999999999886543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=88.13  E-value=0.19  Score=54.37  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=18.1

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      .+.|+|++|||||||+|.+-
T Consensus       463 ~v~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999885

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=88.01  E-value=0.22  Score=44.01  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=18.0

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..++|.|++||||||++..+.
T Consensus        35 ~~ilI~GpsGsGKStLA~~La   55 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELV   55 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999987653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=87.95  E-value=0.66  Score=46.82  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+++..+.++|..|.-..---=.....-+|+.|.|||..+           --+..+..+|+......           .
T Consensus        96 ~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~qT~~v~~~a~~~~-----------l  153 (548)
T 3vqt_A           96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEAQTRKLMDVCRMRA-----------T  153 (548)
T ss_dssp             EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCHHHHHHHHHHHHTT-----------C
T ss_pred             EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------CcccccHHHHHHHHHhC-----------C
Confidence            6888999999999975432222223446899999999886           56778888888776543           7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++|.| +|..
T Consensus       154 p~i~fINK~Dr~  165 (548)
T 3vqt_A          154 PVMTFVNKMDRE  165 (548)
T ss_dssp             CEEEEEECTTSC
T ss_pred             ceEEEEecccch
Confidence            8999999 9985

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=87.91  E-value=0.22  Score=45.39  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=18.7

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -+||.|+.|+||||+++.+.-
T Consensus        49 ~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999998753

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=87.84  E-value=0.23  Score=43.03  Aligned_cols=20  Identities=25%  Similarity=0.398  Sum_probs=17.3

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      .-+|+.|.+|+||||++..+
T Consensus        17 ~gvli~G~SGaGKStlal~L   36 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLAL   36 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHH
Confidence            36899999999999997754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=87.75  E-value=0.41  Score=48.39  Aligned_cols=67  Identities=13%  Similarity=0.048  Sum_probs=43.5

Q ss_pred             eeEEEecCCccc-----------cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCcc
Q 019426          222 VYRLFDVGGQRN-----------ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFF  290 (341)
Q Consensus       222 ~~~l~DvgGqr~-----------eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~  290 (341)
                      .+.+||+.|...           .+..|..++.++++||||+|.+..+          -..+....++.+...    +  
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~----------~~~~~~~~l~~l~~~----~--  218 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE----------ISDEFSEAIGALRGH----E--  218 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC----------CCHHHHHHHHHTTTC----G--
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC----------CCHHHHHHHHHHHhc----C--
Confidence            578999999854           1244556778899999999997632          112233344443221    1  


Q ss_pred             ccCCceeEEEEec-cCccCc
Q 019426          291 CATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       291 ~~~~~~~iilf~n-~d~~~~  309 (341)
                           .|+++.+| +|++..
T Consensus       219 -----~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          219 -----DKIRVVLNKADMVET  233 (550)
T ss_dssp             -----GGEEEEEECGGGSCH
T ss_pred             -----CCEEEEEECCCccCH
Confidence                 56788888 999843

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=87.73  E-value=0.22  Score=47.09  Aligned_cols=20  Identities=20%  Similarity=0.512  Sum_probs=18.0

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      .|+|.|+.||||||+.+.+.
T Consensus         7 ~i~i~GptGsGKTtla~~La   26 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALA   26 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=87.69  E-value=0.54  Score=44.39  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...+|+++|..+|||||+++.+-
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~   55 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIV   55 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHh
Confidence            34599999999999999999864

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=87.54  E-value=0.34  Score=48.16  Aligned_cols=24  Identities=21%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +..+||+|+|..++|||||++.+.
T Consensus       241 r~~~kV~ivG~pnvGKSSLln~L~  264 (482)
T 1xzp_A          241 NRGLRMVIVGKPNVGKSTLLNRLL  264 (482)
T ss_dssp             HHCEEEEEECCHHHHTCHHHHHHH
T ss_pred             cCCCEEEEECcCCCcHHHHHHHHH
Confidence            455899999999999999999764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=87.52  E-value=0.24  Score=45.44  Aligned_cols=23  Identities=26%  Similarity=0.647  Sum_probs=20.1

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...+|+++|..++|||||+..+-
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~   45 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIV   45 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHH
Confidence            45689999999999999999763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1cipa1	121	a.66.1.1 (A:61-181) Transducin (alpha subunit), in	1e-36
d1tada1	121	a.66.1.1 (A:57-177) Transducin (alpha subunit), in	2e-36
d1zcba1	126	a.66.1.1 (A:76-201) Transducin (alpha subunit), in	2e-34
d1zcaa1	122	a.66.1.1 (A:83-204) Transducin (alpha subunit), in	5e-30
d2bcjq1	117	a.66.1.1 (Q:67-183) Transducin (alpha subunit), in	8e-28
d1azta1	114	a.66.1.1 (A:88-201) Transducin (alpha subunit), in	4e-24
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	4e-04

>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 121

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  126 bits (317), Expect = 1e-36
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           + E E K Y +V+++N  Q+I  +      L  +  D+          +   +L  + G 
Sbjct: 1   YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDA-------ARADDARQLFVLAGA 53

Query: 135 LDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDD 194
            +   +T ELA  I+ LW D  +Q  +    E QL D A Y++ +L R++  NY+PT+ D
Sbjct: 54  AEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQD 113

Query: 195 VLYARVRT 202
           VL  RV+T
Sbjct: 114 VLRTRVKT 121

>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 121

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  125 bits (315), Expect = 2e-36
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 7/128 (5%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           +   E   +I++I+ N  Q+I  +      L     DS         ++   KL  +   
Sbjct: 1   YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDS-------ARQDDARKLMHMADT 53

Query: 135 LDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDD 194
           ++   + KE+++ I+ LW D  IQ  +   +E QL D A Y++ +L+RL    YVPT+ D
Sbjct: 54  IEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQD 113

Query: 195 VLYARVRT 202
           VL +RV+T
Sbjct: 114 VLRSRVKT 121

>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (303), Expect = 2e-34
 Identities = 32/125 (25%), Positives = 58/125 (46%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           FD+   + +   I++NV + ++VL D  ++L     D+   +   +      +       
Sbjct: 1   FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQG 60

Query: 135 LDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDD 194
           +   R+  +    I  LW D  IQ  Y    E QL +   YF++NL +L   +Y+P++ D
Sbjct: 61  MVETRVFLQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQD 120

Query: 195 VLYAR 199
           +L AR
Sbjct: 121 ILLAR 125

>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (272), Expect = 5e-30
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 10/128 (7%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEI--- 131
           FD+  L  +   I  N+ +  +VL D   +L      S       EN++ G  L      
Sbjct: 1   FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPWQHS-------ENEKHGMFLMAFENK 53

Query: 132 GGRLDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPT 191
            G    P   +     +  LW D  I+E ++  +E QL +   YF++NL R+   NY P+
Sbjct: 54  AGLPVEPATFQLYVPALSALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPS 113

Query: 192 KDDVLYAR 199
           K D+L AR
Sbjct: 114 KQDILLAR 121

>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 8e-28
 Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 8/125 (6%)

Query: 75  FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGR 134
           + + + + +  +++ N++  ++ +      L        K     E+ +   +L      
Sbjct: 1   YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTL--------KIPYKYEHNKAHAQLVREVDV 52

Query: 135 LDYPRLTKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDD 194
                      + I++LW DP IQE Y    E QL D   Y++ +L R++D +Y+PT+ D
Sbjct: 53  EKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQD 112

Query: 195 VLYAR 199
           VL  R
Sbjct: 113 VLRVR 117

>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 114

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.0 bits (231), Expect = 4e-24
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 81  KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRL 140
            + +  I  N+ + I+ +      L      +     + EN+   + +  +    D+   
Sbjct: 2   ATKVQDIKNNLKEAIETIVAAMSNLVPPVELA-----NPENQFRVDYILSVMNVPDFD-F 55

Query: 141 TKELAEDIETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR 199
             E  E  + LW D  ++  Y   NE QL DCA YF++ +  +   +YVP+  D+L  R
Sbjct: 56  PPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR 114

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 43/86 (50%), Positives = 58/86 (67%), Gaps = 6/86 (6%)

Query: 202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTL 261
            TG+VE  F+    H      +++FDVGGQR+ER+KWIH FEGV+A+IFC A+S+YD  L
Sbjct: 29  GTGIVETHFTFKDLH------FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 82

Query: 262 FEDEQKNRMMETKELFDWVLKQPCFE 287
            EDE+ NRM E+ +LFD +     F 
Sbjct: 83  AEDEEMNRMHESMKLFDSICNNKWFT 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1tada1	121	Transducin (alpha subunit), insertion domain {Cow	99.97
d1cipa1	121	Transducin (alpha subunit), insertion domain {Rat	99.96
d2bcjq1	117	Transducin (alpha subunit), insertion domain {Mous	99.96
d1zcaa1	122	Transducin (alpha subunit), insertion domain {Mous	99.95
d1zcba1	126	Transducin (alpha subunit), insertion domain {Mous	99.95
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.94
d1azta1	114	Transducin (alpha subunit), insertion domain {Cow	99.94
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.76
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.54
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.25
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.18
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.89
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.85
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.75
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.69
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.67
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.6
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.5
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.46
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.45
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.32
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.31
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.31
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.24
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.03
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.98
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.84
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.73
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.67
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.67
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.6
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	97.55
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.53
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.52
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.52
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.5
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.49
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.47
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.45
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	97.42
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.33
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.33
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.33
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.16
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.79
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.78
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.74
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.58
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.53
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.5
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.43
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.38
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.3
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.29
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.25
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.22
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.16
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.16
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.1
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.06
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.06
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.04
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.03
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.99
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.92
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.79
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.74
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.72
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.71
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.71
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.7
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.68
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.66
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.63
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.62
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.62
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.61
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.59
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.55
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.53
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.53
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.53
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.49
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.48
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.47
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.41
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.38
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.35
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.34
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.31
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.26
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.26
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.25
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.23
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.17
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.14
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.13
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.13
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.13
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.13
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.12
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.01
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.0
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.99
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.98
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.93
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.93
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	94.92
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.91
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.88
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.88
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.86
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.82
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.82
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.8
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.79
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.78
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.74
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	94.73
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.7
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	94.68
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	94.68
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.67
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.63
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	94.53
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	94.39
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.35
d1g2912	240	Maltose transport protein MalK, N-terminal domain	94.32
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.31
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.28
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.25
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.23
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.08
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	94.03
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.02
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.02
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.86
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	93.85
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.85
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.79
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.72
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	93.72
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.65
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.6
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.52
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.47
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	93.4
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.35
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.21
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.21
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	93.17
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.16
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.93
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.55
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.54
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.32
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	92.04
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.99
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.92
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	91.88
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	91.7
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.61
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.6
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.6
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.35
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.32
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	91.31
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	91.21
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	91.17
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.15
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	91.09
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	91.0
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.98
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	90.84
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	90.55
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	90.5
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	90.46
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	90.22
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	90.22
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	89.98
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.95
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	89.91
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.59
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	89.5
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	89.46
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	89.44
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	89.41
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	89.18
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.16
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	89.12
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.08
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	89.02
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.86
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	88.77
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	88.74
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	88.65
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	88.48
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.33
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	88.28
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	88.2
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.65
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	87.58
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	87.55
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	87.22
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.19
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	87.1
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	87.08
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	87.02
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	86.94
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	86.84
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.75
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	86.52
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	86.32
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	86.3
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.26
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	86.22
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	86.22
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	86.02
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	85.91
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	85.66
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	85.58
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	85.34
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.32
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	85.31
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	85.31
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	85.17
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	84.8
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	84.69
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	84.64
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	84.44
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	84.4
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	84.34
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	84.21
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	83.7
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	83.62
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	83.33
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	83.29
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	83.24
d1ls1a2	207	GTPase domain of the signal sequence recognition p	83.18
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	82.98
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	82.95
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	82.68
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	81.91
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	81.58
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	80.97
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	80.74
d1okkd2	207	GTPase domain of the signal recognition particle r	80.59
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	80.4
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	80.3
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	80.17
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	80.14
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	80.07

>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=4.2e-31  Score=217.36  Aligned_cols=121  Identities=31%  Similarity=0.535  Sum_probs=108.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCC
Q 019426           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWAD  154 (341)
Q Consensus        75 ~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d  154 (341)
                      |+.+|+..|+++|+.|++++|+.|+++|+.++++..       +++++..+..+.......+.+.++++++++|++||+|
T Consensus         1 Fs~eE~~~~~~~I~~Nii~~m~~li~a~~~l~i~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~i~~LW~D   73 (121)
T d1tada1           1 YSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYG-------DSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKD   73 (121)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS-------STTHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCC-------CchHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCC
Confidence            789999999999999999999999999999997632       4567777766665443334567999999999999999


Q ss_pred             hHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccc
Q 019426          155 PAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRT  202 (341)
Q Consensus       155 ~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T  202 (341)
                      ++||+||+|+++|+|+|+++|||++++||++|+|+||++||||+|.+|
T Consensus        74 ~~iq~~~~r~~ef~L~Dsa~YF~~~l~RI~~~~Y~PT~qDiLr~R~~T  121 (121)
T d1tada1          74 SGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKT  121 (121)
T ss_dssp             HHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCCCC
T ss_pred             HHHHHHHHhhhccccCcchHHHHHHHHHHcCCCCCCCHHHHhhhcCCC
Confidence            999999999999999999999999999999999999999999999997

>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.4e-30  Score=214.15  Aligned_cols=121  Identities=31%  Similarity=0.532  Sum_probs=105.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCC
Q 019426           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWAD  154 (341)
Q Consensus        75 ~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d  154 (341)
                      |+++|+..|+++|+.|++++|+.|+++|+.++++..       ++.++..+..+.........+.++++++++|..||+|
T Consensus         1 Fs~eE~~~~~~~I~~Ni~~~~~~ll~a~~~l~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~LW~D   73 (121)
T d1cipa1           1 YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFG-------DAARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKD   73 (121)
T ss_dssp             CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCCS-------STTHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCCC-------ChhHHHHHHHHHHhhccccCCCCCHHHHHHHHHHhCC
Confidence            789999999999999999999999999999997642       4455555554433322223456889999999999999


Q ss_pred             hHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccccc
Q 019426          155 PAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARVRT  202 (341)
Q Consensus       155 ~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~~T  202 (341)
                      ++||++|+++++|+|+|+++|||++++||++|+|+||++||||+|.+|
T Consensus        74 ~~Iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dY~PT~qDILr~R~~T  121 (121)
T d1cipa1          74 SGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKT  121 (121)
T ss_dssp             HHHHHHHTTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHTCCCCC
T ss_pred             HHHHHHHHhhhcccCCCChHHHHHHHHHHcCCCCCCCHHHHhHhcCCC
Confidence            999999999999999999999999999999999999999999999997

>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.4e-29  Score=204.00  Aligned_cols=117  Identities=25%  Similarity=0.549  Sum_probs=106.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCC
Q 019426           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWAD  154 (341)
Q Consensus        75 ~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d  154 (341)
                      |+.+|+..|+++|+.|++++|+.|++||+.++++.       .+++++..+..+.+.... +.+.+++++++.|..||+|
T Consensus         1 fs~eE~~~~~~~I~~Nii~~m~~ll~a~~~l~i~~-------~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~i~~LW~D   72 (117)
T d2bcjq1           1 YSDEDKRGFTKLVYQNIFTAMQAMIRAMDTLKIPY-------KYEHNKAHAQLVREVDVE-KVSAFENPYVDAIKSLWND   72 (117)
T ss_dssp             CCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCC-------SSTTHHHHHHHHHTSCST-TCCCCCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChhhHHHHHHHHhcccc-cccccCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999763       256778888888776543 2356899999999999999


Q ss_pred             hHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceecc
Q 019426          155 PAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR  199 (341)
Q Consensus       155 ~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r  199 (341)
                      |+||+||+++++|+|+|+++|||++++||++|+|+||++||||+|
T Consensus        73 ~~iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dY~PT~qDILr~R  117 (117)
T d2bcjq1          73 PGIQECYDRRREYQLSDSTKYYLNDLDRVADPSYLPTQQDVLRVR  117 (117)
T ss_dssp             HHHHHHHHTTTSSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCC
T ss_pred             HHHHHHHHHhhhhccCcccHHHHHHHHHHcCCCCCCCHHHhhhcC
Confidence            999999999999999999999999999999999999999999998

>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4e-29  Score=205.73  Aligned_cols=119  Identities=30%  Similarity=0.532  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCC---CCCCcHHHHHHHHHh
Q 019426           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLD---YPRLTKELAEDIETL  151 (341)
Q Consensus        75 ~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~e~~~~I~~L  151 (341)
                      |+++|+..|+++|+.|++++|+.|+++|+.++++.       .+++++..+..+..+.....   .+.++++++++|.+|
T Consensus         1 Fs~~E~~~~r~~I~~Nii~~~~~Li~am~~l~i~~-------~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~L   73 (122)
T d1zcaa1           1 FDQKALLEFRDTIFDNILKGSRVLVDARDKLGIPW-------QHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL   73 (122)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------SSGGGHHHHHHHHTCCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCC-------CChhhHHHHHHHHhcccccCCCCCccchHHHHHHHHHH
Confidence            78999999999999999999999999999998763       35778888888877654322   123457889999999


Q ss_pred             cCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccc
Q 019426          152 WADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARV  200 (341)
Q Consensus       152 W~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~  200 (341)
                      |+|++||++|+++++|+|+|++.|||++++||++|+|+||++||||+|+
T Consensus        74 W~D~~Iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dYiPT~qDILr~R~  122 (122)
T d1zcaa1          74 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQLNYFPSKQDILLARK  122 (122)
T ss_dssp             HHCHHHHHHHHTGGGSCCCTHHHHHHHTHHHHSSTTCCCCHHHHHHCCC
T ss_pred             HCCHHHHHHHHhccccccccchHHHHHHHHHHcCCCCCCCHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999995

>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.4e-29  Score=205.22  Aligned_cols=119  Identities=30%  Similarity=0.528  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCC-------CCCCCcHHHHHH
Q 019426           75 FDEAELKSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRL-------DYPRLTKELAED  147 (341)
Q Consensus        75 ~~~~e~~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~e~~~~  147 (341)
                      |+.+|+..|+++|+.|++++|+.|+++|+.++++.       .+++++..++.+..+....       ..+.+++++++.
T Consensus         1 Fs~~Er~~~r~~I~~Nii~~m~~ll~a~~~l~i~~-------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~   73 (126)
T d1zcba1           1 FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPW-------GDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA   73 (126)
T ss_dssp             CCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCCC-------SSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHHHHHHHH
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCC-------CCchhHHHHHHHHhcccccccccccccccccCHHHHHH
Confidence            78999999999999999999999999999999764       2567777777776653321       123567899999


Q ss_pred             HHHhcCChHHHHHHHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceeccc
Q 019426          148 IETLWADPAIQETYAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYARV  200 (341)
Q Consensus       148 I~~LW~d~~vq~~~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r~  200 (341)
                      |.+||+||+||+||+++++|+|+|+++|||++++||++|+|+||++||||+|+
T Consensus        74 i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~~dYiPT~qDILr~Rk  126 (126)
T d1zcba1          74 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVPDYIPSQQDILLARR  126 (126)
T ss_dssp             HHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTSTTCCCCHHHHHHCCC
T ss_pred             HHHHhCCHHHHHHHHHhhhhcCCcchHHHHHHHHHHcCCCCCCCHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999995

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.3e-27  Score=213.15  Aligned_cols=114  Identities=33%  Similarity=0.561  Sum_probs=107.5

Q ss_pred             ccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          200 VRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       200 ~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      .||+|+.+..|      .+++.++++||+|||+..|++|.+||++++++|||+|++++++.+.+|...+|+.|++.+|+.
T Consensus        32 ~pTiG~~~~~~------~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~  105 (221)
T d1azta2          32 VLTSGIFETKF------QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKS  105 (221)
T ss_dssp             CCCCSCEEEEE------EETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHH
T ss_pred             CCCCCeEEEEE------EECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHH
Confidence            37889999999      788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCccccCccccCCceeEEEEec-cCccCcccccccccc-ccceeeecccccc
Q 019426          280 VLKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNF-FLKKKIFWYSFAE  331 (341)
Q Consensus       280 i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~-~~~~~~~~~~~~~  331 (341)
                      +++++++.+       .||+||+| +|++     +.|+.. ..++++|||+|+|
T Consensus       106 il~~~~~~~-------~~iil~~NK~Dl~-----~~k~~~~~~~~~~~f~~~~~  147 (221)
T d1azta2         106 IWNNRWLRT-------ISVILFLNKQDLL-----AEKVLAGKSKIEDYFPEFAR  147 (221)
T ss_dssp             HHTCGGGSS-------CEEEEEEECHHHH-----HHHHHHCSSCHHHHCGGGGG
T ss_pred             HhcChhhCC-------CcEEEEechhhhh-----hhhhccCcccHHHhCccccc
Confidence            999999998       89999999 9999     777754 4789999999986

>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.2e-27  Score=192.50  Aligned_cols=113  Identities=24%  Similarity=0.445  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCcchHHHHHHHhhccCCCCCCCCcHHHHHHHHHhcCChHHHHH
Q 019426           81 KSYISVIHANVYQTIKVLYDGSKELAQNETDSMKFVVSSENKEIGEKLSEIGGRLDYPRLTKELAEDIETLWADPAIQET  160 (341)
Q Consensus        81 ~~~~~~I~~ni~~s~~~Ll~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~I~~LW~d~~vq~~  160 (341)
                      +.+.+.|++|++++|++|++||+.|++...     ..+++++..+..+.+..... ...++++++++|++||+|++||+|
T Consensus         2 ~~~i~~I~~Nii~sm~~li~Am~~L~~~i~-----~~~~~n~~~~~~i~~~~~~~-~~~~~~e~~~~i~~LW~D~giq~~   75 (114)
T d1azta1           2 ATKVQDIKNNLKEAIETIVAAMSNLVPPVE-----LANPENQFRVDYILSVMNVP-DFDFPPEFYEHAKALWEDEGVRAC   75 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCC-----CSSGGGHHHHHHHHHTTTCS-SCCCCHHHHHHHHHHHHSHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHcCCCCC-----cCCHHHHHHHHHHHhccccc-CcccCHHHHHHHHHHhCCHHHHHH
Confidence            467899999999999999999998864311     23678888888887765433 246889999999999999999999


Q ss_pred             HHcCCCCCCCcchhhHHhhhhhccCCCCccCcccceecc
Q 019426          161 YAHGNELQLPDCANYFMENLQRLSDANYVPTKDDVLYAR  199 (341)
Q Consensus       161 ~~~~~~~~l~d~~~YFl~~l~ri~~~~Y~Pt~~DIl~~r  199 (341)
                      |+++++|+|+|+++|||++++||++++|+||++||||+|
T Consensus        76 ~~r~~e~~L~Dsa~Yfl~~i~RI~~~dY~PT~qDiLr~R  114 (114)
T d1azta1          76 YERSNEYQLIDCAQYFLDKIDVIKQDDYVPSDQDLLRCR  114 (114)
T ss_dssp             HHTGGGTTCCTTHHHHHTTHHHHHSTTCCCCHHHHHHCC
T ss_pred             HHhccccCCCCchHHHHHHHHHHcCCCCCCCHhHhhccC
Confidence            999999999999999999999999999999999999998

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.8e-23  Score=182.02  Aligned_cols=122  Identities=30%  Similarity=0.588  Sum_probs=105.9

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|+.+..|      ..++.++.+||+|||+..|+.|.++|+++.+++|++++++++..+.++...+|+++++.+|+++
T Consensus        30 pTiG~~~~~~------~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  103 (200)
T d1zcba2          30 PTKGIHEYDF------EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI  103 (200)
T ss_dssp             CCSSEEEEEE------EETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred             CeeeeEEEEE------eeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHH
Confidence            7889999999      7889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc--chhhhhhhcC
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE--NFLHAVSKQI  341 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  341 (341)
                      ++++.+.+       .|++|++| +|++     +.++ ...++.+|||+|.|  |+.+++.+||
T Consensus       104 ~~~~~~~~-------~piilv~NK~Dl~-----~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2         104 VNNRVFSN-------VSIILFLNKTDLL-----EEKV-QVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             HTCGGGTT-------SEEEEEEECHHHH-----HHHT-TTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             hhChhhcC-------ceEEEEeccchhh-----hhhc-cccHHHHhCccccCCcchHHHHHHHH
Confidence            99999888       89999999 9999     6666 45779999999999  8888887653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.4e-18  Score=147.80  Aligned_cols=120  Identities=39%  Similarity=0.628  Sum_probs=105.3

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||+|+.+..+      .....++.+||+|||...|..|.+||.++++++||.|+++++....+....+++.+++..|..+
T Consensus        28 ~t~~~~~~~~------~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i  101 (195)
T d1svsa1          28 AGTGIVETHF------TFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI  101 (195)
T ss_dssp             CCCSEEEEEE------EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             CCccEEEEEE------EeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHH
Confidence            3567777777      6778899999999999999999999999999999999999999999988999999999999999


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc-chhhhhhh
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE-NFLHAVSK  339 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  339 (341)
                      ++++...+       .|++++.| +|++     ..+. ...++..+||++.+ ++.+.+..
T Consensus       102 ~~~~~~~~-------~~~~lv~Nk~d~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~  149 (195)
T d1svsa1         102 CNNKWFTD-------TSIILFLNKKDLF-----EEKI-KKSPLTICYPEYAGSNTYEEAAA  149 (195)
T ss_dssp             HTCGGGTT-------SEEEEEEECHHHH-----HHHT-TTSCGGGTCTTCCSCSSHHHHHH
T ss_pred             hcccccCC-------CCEEEEeccchhh-----hhhc-cchHHHHHhhhhcCcccHHHHHH
Confidence            99998887       89999998 9998     6665 56778899999988 66655543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=6.9e-15  Score=126.26  Aligned_cols=121  Identities=35%  Similarity=0.622  Sum_probs=107.9

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|+....+      ......+++||+|||...|..|.++|.++++++||+++++++..+..+...+++.|++..|..+
T Consensus        31 pTiG~~~~~~------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  104 (200)
T d2bcjq2          31 PTTGIIEYPF------DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI  104 (200)
T ss_dssp             CCCSCEEEEE------ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             ceeeEEEEEE------eccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHH
Confidence            4679998888      7888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccCccccccccccccceeeecccccc--chhhhhhhc
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVSGMHWQTVGNFFLKKKIFWYSFAE--NFLHAVSKQ  340 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  340 (341)
                      ++++.+.+       .|+++++| +|++     ..++ ....+.+++|++.+  ++..++.+|
T Consensus       105 l~~~~~~~-------~~~~~v~NK~Dl~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2         105 ITYPWFQN-------SSVILFLNKKDLL-----EEKI-MYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             HHCGGGSS-------SEEEEEEECHHHH-----HHHT-TTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             HhhhhccC-------ccEEEecchhhhh-----hhcc-cchHHHHhcccccCCchhHHHHHHH
Confidence            99998888       89999999 9999     6565 45568899999988  776665544

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.25  E-value=3.3e-11  Score=100.57  Aligned_cols=84  Identities=20%  Similarity=0.364  Sum_probs=73.1

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|+....+      ..++..+.+||++|+...|..|.+++.++++++||+|.++          ...+.++...|...
T Consensus        32 ~t~~~~~~~~------~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d----------~~~~~~~~~~~~~~   95 (165)
T d1ksha_          32 PTLGFNIKTL------EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSL   95 (165)
T ss_dssp             CCSSEEEEEE------EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTC----------GGGHHHHHHHHHHH
T ss_pred             ceEeeeeeec------cccccceeeeecCcchhhhhHHHhhhhhhhcceeeeeccc----------chhHHHHHHhhhhh
Confidence            4667777777      6778999999999999999999999999999999999998          46788999999998


Q ss_pred             hcCccccCccccCCceeEEEEec-cCcc
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      +.+....+       .|++|++| +|+.
T Consensus        96 ~~~~~~~~-------~p~iiv~nK~Dl~  116 (165)
T d1ksha_          96 LVEERLAG-------ATLLIFANKQDLP  116 (165)
T ss_dssp             HTCGGGTT-------CEEEEEEECTTST
T ss_pred             hhhcccCC-------CceEEEEeccccc
Confidence            88776666       89999998 9985

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.18  E-value=2.8e-11  Score=101.93  Aligned_cols=85  Identities=21%  Similarity=0.397  Sum_probs=70.4

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|++...+      ...+..+.+||+||+...+..|.+++.+++++|||+|+++          ..++.++...+..+.
T Consensus        47 ~~~~~~~~i------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d----------~~s~~~~~~~~~~~~  110 (176)
T d1fzqa_          47 TQGFNIKSV------QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD----------RKRFEETGQELTELL  110 (176)
T ss_dssp             ETTEEEEEE------EETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTC----------GGGHHHHHHHHHHHT
T ss_pred             eeeeeEEEe------ccCCeeEeEeeccccccchhHHHHHhhccceeEEeecccc----------ccchhhhhhhhhhhh
Confidence            334554445      5567889999999999999999999999999999999997          467889999888888


Q ss_pred             cCccccCccccCCceeEEEEec-cCccCc
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      ......+       .||+|.+| +|+...
T Consensus       111 ~~~~~~~-------~pillv~nK~Dl~~~  132 (176)
T d1fzqa_         111 EEEKLSC-------VPVLIFANKQDLLTA  132 (176)
T ss_dssp             TCGGGTT-------CCEEEEEECTTSTTC
T ss_pred             hhhccCC-------CeEEEEEEecccccc
Confidence            8766655       79999998 999743

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.89  E-value=2.2e-09  Score=89.42  Aligned_cols=86  Identities=20%  Similarity=0.369  Sum_probs=75.1

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ||.|+....+      ..++..+.+||+|||...+..|.++|.++++++||+|+++.          .++.++...+..+
T Consensus        33 ~T~~~~~~~~------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~   96 (164)
T d1zd9a1          33 PTVGFNMRKI------TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ----------EKIEASKNELHNL   96 (164)
T ss_dssp             CCCSEEEEEE------EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCG----------GGHHHHHHHHHHH
T ss_pred             ccceeeeeee------eeeeEEEEEeeccccccccccccccccccchhhcccccccc----------cccchhhhhhhhh
Confidence            5678877777      67789999999999999999999999999999999999973          5689999999999


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccCc
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      ++++...+       .|++|++| .|+...
T Consensus        97 ~~~~~~~~-------~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          97 LDKPQLQG-------IPVLVLGNKRDLPGA  119 (164)
T ss_dssp             HTCGGGTT-------CCEEEEEECTTSTTC
T ss_pred             hhhhcccC-------CcEEEEEeccccchh
Confidence            99877666       89999998 998643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=8e-09  Score=88.52  Aligned_cols=72  Identities=11%  Similarity=0.168  Sum_probs=55.7

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||+|||...+..|..+|.+++++|||+|+++          ...+.+....+..+.. ....+       .|+
T Consensus        53 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~----------~~s~~~~~~~~~~~~~-~~~~~-------~~i  114 (194)
T d2bcgy1          53 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD----------QESFNGVKMWLQEIDR-YATST-------VLK  114 (194)
T ss_dssp             EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHH-HSCTT-------CEE
T ss_pred             EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcc----------hhhhhhHhhhhhhhhh-cccCC-------ceE
Confidence            34678999999999999999999999999999999987          3556666666655532 22233       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       115 ilv~nK~D~~~  125 (194)
T d2bcgy1         115 LLVGNKCDLKD  125 (194)
T ss_dssp             EEEEECTTCTT
T ss_pred             EEEEecccccc
Confidence            99998 88763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.75  E-value=1.8e-08  Score=84.45  Aligned_cols=85  Identities=20%  Similarity=0.364  Sum_probs=74.0

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      +|.|+.....      ......+.+||+||+...|..|.+++.+++++|||+|+++.          ..+.++...+..+
T Consensus        42 ~t~~~~~~~~------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~----------~~~~~~~~~l~~~  105 (173)
T d1e0sa_          42 PTVGFNVETV------TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR----------DRIDEARQELHRI  105 (173)
T ss_dssp             EETTEEEEEE------EETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCG----------GGHHHHHHHHHHH
T ss_pred             ceeeeeEEEe------eccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccc----------hhHHHHHHHHHHH
Confidence            5677777666      56778999999999999999999999999999999999973          6788888999999


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccC
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      +.++...+       .|++|++| +|+..
T Consensus       106 ~~~~~~~~-------~piiiv~NK~Dl~~  127 (173)
T d1e0sa_         106 INDREMRD-------AIILIFANKQDLPD  127 (173)
T ss_dssp             HTSGGGTT-------CEEEEEEECTTSTT
T ss_pred             hhhccccc-------ceeeeeeecccccc
Confidence            98887766       89999999 99863

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.69  E-value=2.4e-08  Score=84.16  Aligned_cols=84  Identities=20%  Similarity=0.349  Sum_probs=66.9

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|......      ..++.++.+||+||+...+..|.+++.++++++||+|+++          ...+.++...+..++
T Consensus        48 t~~~~~~~~------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d----------~~s~~~~~~~l~~~~  111 (182)
T d1moza_          48 TIGFNVETL------SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLML  111 (182)
T ss_dssp             STTCCEEEE------EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTC----------TTTHHHHHHHHHHHT
T ss_pred             ccceEEEEE------eeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecc----------cccchhHHHHHHHHH
Confidence            445555555      5677899999999999999999999999999999999997          467888888888888


Q ss_pred             cCccccCccccCCceeEEEEec-cCccC
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      .+....+       .|++|.+| +|+..
T Consensus       112 ~~~~~~~-------~piliv~NK~Dl~~  132 (182)
T d1moza_         112 QEEELQD-------AALLVFANKQDQPG  132 (182)
T ss_dssp             TSSTTSS-------CEEEEEEECTTSTT
T ss_pred             HhhccCC-------cceEEEEEeecccc
Confidence            8776666       89999999 99863

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=2.5e-08  Score=82.86  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=34.5

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ....+.+||++||...+..|..++++++++|+|+|+++
T Consensus        49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~   86 (166)
T d1g16a_          49 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD   86 (166)
T ss_dssp             CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC
T ss_pred             EEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC
Confidence            34567889999999889999999999999999999998

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=7.6e-08  Score=80.22  Aligned_cols=71  Identities=11%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++|+|+|+++.          +.+......+..+.. ....       ..||+
T Consensus        53 ~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~~~-~~~~-------~~~ii  114 (169)
T d3raba_          53 RIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWSTQIKT-YSWD-------NAQVL  114 (169)
T ss_dssp             EEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHH-HCCS-------CCEEE
T ss_pred             eEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccc----------hhhhhhhhhhhhhhc-ccCC-------cceEE
Confidence            46789999999988889999999999999999999984          333333344433321 1111       27888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      +.+| +|+..
T Consensus       115 vv~nK~D~~~  124 (169)
T d3raba_         115 LVGNKCDMED  124 (169)
T ss_dssp             EEEECTTCGG
T ss_pred             EEEeeccccc
Confidence            8877 99763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.8e-08  Score=81.15  Aligned_cols=73  Identities=11%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..+..++.+++++++|.|+++          ...+......+..+.......+       .||+
T Consensus        50 ~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~-------~pii  112 (167)
T d1kaoa_          50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN----------QQSFQDIKPMRDQIIRVKRYEK-------VPVI  112 (167)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHTTTSC-------CCEE
T ss_pred             eEeeccccCCCccccccchHHHhhcccceeeeeeecc----------hhhhhhhhchhhhhhhhccCCC-------CCEE
Confidence            3578899999999988889999999999999999997          3456666666665554332333       7899


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |.+| +|+...
T Consensus       113 lvgnK~Dl~~~  123 (167)
T d1kaoa_         113 LVGNKVDLESE  123 (167)
T ss_dssp             EEEECGGGGGG
T ss_pred             EEEEccchhhc
Confidence            9988 998743

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-07  Score=78.90  Aligned_cols=72  Identities=10%  Similarity=0.074  Sum_probs=46.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..|..++.+++++|+|.|+++          ...++.....++.+.... -.       ..|++
T Consensus        51 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~Sf~~~~~~~~~~~~~~-~~-------~~~~i  112 (167)
T d1z08a1          51 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD----------EDSFQKVKNWVKELRKML-GN-------EICLC  112 (167)
T ss_dssp             EEEEEEEECCCC-------CCSSTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHH-GG-------GSEEE
T ss_pred             cceeeeeccCCcceecccchhhccCCceeEEEEeCCc----------hhHHHhhhhhhhhccccc-cc-------cccee
Confidence            4678999999999999999999999999999999997          344555555554443321 11       26777


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |..| +|+..+
T Consensus       113 lvgnK~Dl~~~  123 (167)
T d1z08a1         113 IVGNKIDLEKE  123 (167)
T ss_dssp             EEEECGGGGGG
T ss_pred             eeccccccccc
Confidence            7787 998743

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.8e-07  Score=77.56  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=48.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..|..++.+++++|+|.|+++-          ..+......+..+ ......+       .|++
T Consensus        52 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~-~~~~~~~-------~~ii  113 (167)
T d1z0ja1          52 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE----------ETFSTLKNWVREL-RQHGPPS-------IVVA  113 (167)
T ss_dssp             EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHH-HHHSCTT-------SEEE
T ss_pred             ccceeeeecCCchhhhHHHHHHHhhccceEEEeeechh----------hhhhhHHHhhhhh-hhccCCc-------ceEE
Confidence            34678999999999999999999999999999999862          2222222222222 2111122       7888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+.
T Consensus       114 lvgnK~Dl~  122 (167)
T d1z0ja1         114 IAGNKCDLT  122 (167)
T ss_dssp             EEEECTTCG
T ss_pred             Eecccchhc
Confidence            8888 9986

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=2.1e-07  Score=76.93  Aligned_cols=71  Identities=10%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..|..++.+++++++|+|+++.          ..++.....++.+...  ..+       .|++
T Consensus        50 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~-------~~ii  110 (164)
T d1z2aa1          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR----------ESFEAISSWREKVVAE--VGD-------IPTA  110 (164)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH--HCS-------CCEE
T ss_pred             eeeeeeeccCCccchhhhhhhhhccCceEEEEEeccch----------hhhhhccccccccccc--CCC-------ceEE
Confidence            35789999999999999999999999999999999973          3344433444444321  122       6788


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |.+| +|+..+
T Consensus       111 lVgnK~Dl~~~  121 (164)
T d1z2aa1         111 LVQNKIDLLDD  121 (164)
T ss_dssp             EEEECGGGGGG
T ss_pred             EeeccCCcccc
Confidence            8888 998744

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=3.1e-07  Score=76.38  Aligned_cols=75  Identities=9%  Similarity=0.169  Sum_probs=43.9

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++|+......|..++..++++++|.|+++.          ..++.....++.+.......    ...-.|++
T Consensus        51 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~----~~~~~pii  116 (175)
T d1ky3a_          51 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA----------SSFENIKSWRDEFLVHANVN----SPETFPFV  116 (175)
T ss_dssp             CEEEEEECCC----------CCSTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCS----CTTTCCEE
T ss_pred             cccceeeccCCchhhhhHHHHHhhccceEEEEeecccc----------cccchhhhcchhhhhhhhhc----ccccCcEE
Confidence            35678999999998889999999999999999999873          33444444445444321111    01127899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       117 lv~nK~Dl~~  126 (175)
T d1ky3a_         117 ILGNKIDAEE  126 (175)
T ss_dssp             EEEECTTSCG
T ss_pred             EEecccchhh
Confidence            9998 99873

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.8e-07  Score=77.61  Aligned_cols=71  Identities=10%  Similarity=0.089  Sum_probs=51.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+||...+..|..++.+++++|+|+|+++          ...++.....+...+.. ...+       .|++
T Consensus        52 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~sf~~i~~~~~~~~~~-~~~~-------~pii  113 (183)
T d1mh1a_          52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS----------PASFENVRAKWYPEVRH-HCPN-------TPII  113 (183)
T ss_dssp             EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HSTT-------SCEE
T ss_pred             ceEEEeecccccccchhhhhhcccccceeeeeeccch----------HHHHHHHHHHHHHHHHH-hCCC-------CcEE
Confidence            4568899999999999999999999999999999996          22333333333333332 1122       7899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       114 lvgnK~Dl~~  123 (183)
T d1mh1a_         114 LVGTKLDLRD  123 (183)
T ss_dssp             EEEECHHHHT
T ss_pred             EEeecccchh
Confidence            9988 99763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.5e-07  Score=74.83  Aligned_cols=70  Identities=9%  Similarity=0.003  Sum_probs=44.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+... .....++.+++++|+|.|+++-          ..+......+..+.......+       .|++
T Consensus        49 ~~~l~i~D~~g~~~~-~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~pii  110 (168)
T d2atva1          49 VVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDR----------GSFEEVLPLKNILDEIKKPKN-------VTLI  110 (168)
T ss_dssp             EEEEEEEECCCCCCC-HHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTTSC-------CCEE
T ss_pred             ceEEEEeeccccccc-ccchhhhcccccceeecccCCc----------cchhhhhhhcccccccccccC-------ccee
Confidence            367899999999654 2445678899999999999972          222222222222222122223       7889


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+-
T Consensus       111 lvgnK~Dl~  119 (168)
T d2atva1         111 LVGNKADLD  119 (168)
T ss_dssp             EEEECGGGG
T ss_pred             eeccchhhh
Confidence            9998 9986

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=6.1e-07  Score=74.18  Aligned_cols=71  Identities=8%  Similarity=0.110  Sum_probs=53.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..+..++.+++++|+|.|+++          .+.++.....+..+.......+       .|++
T Consensus        50 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii  112 (166)
T d1ctqa_          50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINN----------TKSFEDIHQYREQIKRVKDSDD-------VPMV  112 (166)
T ss_dssp             EEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTCSS-------CCEE
T ss_pred             eeeeeeeeccCccccccchhhhhhcccccceeecccc----------cccHHHHHHHHHHHHHhcCCCC-------CeEE
Confidence            3568999999999988889989999999999999997          3445555555555554332233       7888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +..| +|+-
T Consensus       113 lv~nK~Dl~  121 (166)
T d1ctqa_         113 LVGNKCDLA  121 (166)
T ss_dssp             EEEECTTCS
T ss_pred             EEecccccc
Confidence            8888 9975

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-06  Score=73.31  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=52.6

Q ss_pred             ceeEEEecCCccc-cccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          221 EVYRLFDVGGQRN-ERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       221 ~~~~l~DvgGqr~-eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ..+.+||++|..+ ++-.|.+|+.+++++|+|.|+++          ...+++....+..+.....-.+       .|++
T Consensus        53 ~~~~~~d~~~~~g~e~~~~~~~~~~~~~~ilvfd~t~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii  115 (172)
T d2g3ya1          53 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITD----------RASFEKASELRIQLRRARQTED-------IPII  115 (172)
T ss_dssp             EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTC----------HHHHHHHHHHHHHHHTSGGGTT-------SCEE
T ss_pred             eeeeeeccccccccccccccccccccceeeeeecccc----------cchhhhhhhhhhhhhhccccCC-------ceEE
Confidence            4567788765432 34467889999999999999997          3567777777777776544344       7899


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+..
T Consensus       116 lvgnK~Dl~~  125 (172)
T d2g3ya1         116 LVGNKSDLVR  125 (172)
T ss_dssp             EEEECTTCGG
T ss_pred             EEeccccccc
Confidence            9998 99863

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.6e-06  Score=70.79  Aligned_cols=73  Identities=11%  Similarity=0.167  Sum_probs=50.3

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||.+|+...+..|..++..++++|++.|+++-.-       .+.+.+-+..+..+.+.....       ..|++|
T Consensus        55 ~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s-------~~~~~~~~~~i~~~~~~~~~~-------~~piil  120 (174)
T d1wmsa_          55 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS-------FQNLSNWKKEFIYYADVKEPE-------SFPFVI  120 (174)
T ss_dssp             EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH-------HHTHHHHHHHHHHHHTCSCTT-------TSCEEE
T ss_pred             eeEeeecccCcceehhhhhhhhhccceEEEEEeeecccc-------cchhhhHHHHHHHHhccccCC-------CceEEE
Confidence            567899999999999999999999999999999986210       122222233333333322222       278898


Q ss_pred             Eec-cCcc
Q 019426          301 FVA-CEHV  307 (341)
Q Consensus       301 f~n-~d~~  307 (341)
                      ..| +|+-
T Consensus       121 VgnK~Dl~  128 (174)
T d1wmsa_         121 LGNKIDIS  128 (174)
T ss_dssp             EEECTTCS
T ss_pred             eccccchh
Confidence            888 9975

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.5e-06  Score=69.45  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=54.2

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||.+|+...+..|..++.+++++|+|.|+++          ...++.....+..++... -.+       .|+
T Consensus        48 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~Sf~~~~~~~~~~~~~~-~~~-------~pi  109 (177)
T d1kmqa_          48 KQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDS----------PDSLENIPEKWTPEVKHF-CPN-------VPI  109 (177)
T ss_dssp             EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHHH-STT-------SCE
T ss_pred             cceeeeccccCccchhcccchhhcccchhhhhhcccch----------hHHHHHHHHHHHHHHHHh-CCC-------Cce
Confidence            34678999999999999999999999999999999987          233444444444444421 123       789


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       110 ilvgnK~Dl~~  120 (177)
T d1kmqa_         110 ILVGNKKDLRN  120 (177)
T ss_dssp             EEEEECGGGTT
T ss_pred             EEeeecccccc
Confidence            99998 99974

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.6e-06  Score=70.57  Aligned_cols=73  Identities=14%  Similarity=0.071  Sum_probs=50.7

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++||...+..|.+++.+++++|+|+|+++          ...+++...++..+.....-.+       .|+
T Consensus        46 ~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~----------~~s~~~~~~~~~~i~~~~~~~~-------~pi  108 (168)
T d2gjsa1          46 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTD----------KGSFEKASELRVQLRRARQTDD-------VPI  108 (168)
T ss_dssp             EEEEEEEEECC-------CHHHHHTSCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHCC--C-------CCE
T ss_pred             cccceeeeecccccccceecccchhhhhhhceeccccc----------cccccccccccchhhccccccc-------ceE
Confidence            34678999999999999999999999999999999997          3556677677666654332223       789


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       109 ilvgnK~Dl~~  119 (168)
T d2gjsa1         109 ILVGNKSDLVR  119 (168)
T ss_dssp             EEEEECTTCGG
T ss_pred             EEeecccchhh
Confidence            99988 99874

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=8.7e-06  Score=68.39  Aligned_cols=71  Identities=14%  Similarity=0.147  Sum_probs=54.6

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||.+||...+..|..++.+++++|+|.|+++          ...++.....+..++.. ...+       .|++
T Consensus        56 ~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~----------~~Sf~~~~~~~~~~~~~-~~~~-------~~~i  117 (185)
T d2atxa1          56 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN----------PASFQNVKEEWVPELKE-YAPN-------VPFL  117 (185)
T ss_dssp             EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC----------HHHHHHHHHTHHHHHHH-HSTT-------CCEE
T ss_pred             eEEeecccccccchhhhhhhhcccccceeeeccccch----------HHHHHHHHHHHHHHHHh-cCCC-------CCee
Confidence            4678999999999999999999999999999999997          24455555555555542 1223       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |..| +|+..
T Consensus       118 lvgnK~Dl~~  127 (185)
T d2atxa1         118 LIGTQIDLRD  127 (185)
T ss_dssp             EEEECTTSTT
T ss_pred             Eeeecccccc
Confidence            8888 99863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.2e-05  Score=66.82  Aligned_cols=74  Identities=9%  Similarity=0.117  Sum_probs=60.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .....++.+||++|+...+..|..++.+++++|+|+|+++          .+.+......+..+.......+       .
T Consensus        52 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~  114 (177)
T d1x3sa1          52 DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR----------RDTFVKLDNWLNELETYCTRND-------I  114 (177)
T ss_dssp             TTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHTTCCSCSC-------C
T ss_pred             eccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC----------ccccccchhhhhhhcccccccc-------e
Confidence            3445689999999999889999999999999999999997          4778888888888877554444       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++.+| +|..
T Consensus       115 ~i~~~~nk~d~~  126 (177)
T d1x3sa1         115 VNMLVGNKIDKE  126 (177)
T ss_dssp             EEEEEEECTTSS
T ss_pred             eeEEEeeccccc
Confidence            8888888 7776

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=7.9e-06  Score=67.75  Aligned_cols=72  Identities=10%  Similarity=0.169  Sum_probs=44.2

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++||...+..|..++.+++++|+|+|+++.          ..++.....+..+.+. ...+       .|+
T Consensus        53 ~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~~i  114 (173)
T d2fu5c1          53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIRNWIRNIEEH-ASAD-------VEK  114 (173)
T ss_dssp             EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-SCTT-------CEE
T ss_pred             EEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCCh----------hhHHHHHHHHHHhhhh-ccCC-------ceE
Confidence            346788999999999999999999999999999999973          4555555555555332 1222       678


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      ++.+| +|...
T Consensus       115 ilv~~k~D~~~  125 (173)
T d2fu5c1         115 MILGNKCDVND  125 (173)
T ss_dssp             EEEEEC--CCS
T ss_pred             EEEEecccchh
Confidence            88887 88763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.7e-05  Score=65.65  Aligned_cols=72  Identities=8%  Similarity=0.027  Sum_probs=53.4

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||.+|+...+..|..++.+++++++|.|+++-          ..++.....+..+....  .+       .|+
T Consensus        50 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~Sf~~~~~~~~~~~~~~--~~-------~pi  110 (170)
T d1i2ma_          50 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR----------VTYKNVPNWHRDLVRVC--EN-------IPI  110 (170)
T ss_dssp             CCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSG----------GGGTTHHHHHHHHHHHH--CS-------CCE
T ss_pred             ccccccccccccccccceecchhcccccchhhccccccc----------cccchhHHHHHHHhhcc--CC-------Cce
Confidence            457899999999999999999999999999999999982          22333344444433211  23       789


Q ss_pred             EEEec-cCccCc
Q 019426          299 TAFVA-CEHVSG  309 (341)
Q Consensus       299 ilf~n-~d~~~~  309 (341)
                      +|.+| +|+-..
T Consensus       111 ilvgnK~Dl~~~  122 (170)
T d1i2ma_         111 VLCGNKVDIKDR  122 (170)
T ss_dssp             EEEEECCCCSCS
T ss_pred             eeecchhhhhhh
Confidence            99998 998643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.8e-05  Score=65.27  Aligned_cols=73  Identities=11%  Similarity=0.079  Sum_probs=54.8

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ..+++.+||++||...+..|..++.+++++|+|+|+++          ...+....+.+..+.... -.       ..|+
T Consensus        52 ~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~-~~-------~~~~  113 (171)
T d2ew1a1          52 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC----------EESFRCLPEWLREIEQYA-SN-------KVIT  113 (171)
T ss_dssp             EEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHS-CT-------TCEE
T ss_pred             EEEEEEEEECCCchhhHHHHHHHHhccceEEEeeeccc----------chhhhhhhhhhhhhcccc-cc-------cccE
Confidence            44678999999999889999999999999999999997          344555556665554321 11       2678


Q ss_pred             EEEec-cCccCc
Q 019426          299 TAFVA-CEHVSG  309 (341)
Q Consensus       299 ilf~n-~d~~~~  309 (341)
                      +|.+| +|+..+
T Consensus       114 ilvgnK~D~~~~  125 (171)
T d2ew1a1         114 VLVGNKIDLAER  125 (171)
T ss_dssp             EEEEECGGGGGG
T ss_pred             EEEEeecccccc
Confidence            88888 998743

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.78  E-value=2.9e-05  Score=63.64  Aligned_cols=85  Identities=18%  Similarity=0.268  Sum_probs=64.5

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV  280 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i  280 (341)
                      ++.|.....+      ...+..+.++|.||+...+..|.+++...+++++|+|.++.          .+...+...+...
T Consensus        45 ~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~----------~~~~~~~~~~~~~  108 (177)
T d1zj6a1          45 PTIGSNVEEI------VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR----------ERISVTREELYKM  108 (177)
T ss_dssp             CCSCSSCEEE------EETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCT----------TTHHHHHHHHHHH
T ss_pred             cccceeEEEE------eecceEEEEeccccccccccchhhhhccceeeeeecccccc----------cchhhhhhhhhhh
Confidence            4555555555      56678999999999999999999999999999999999973          5677777777777


Q ss_pred             hcCccccCccccCCceeEEEEec-cCccC
Q 019426          281 LKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       281 ~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      ...+...+       .|++|.+| +|+..
T Consensus       109 ~~~~~~~~-------~p~iiv~nK~Dl~~  130 (177)
T d1zj6a1         109 LAHEDLRK-------AGLLIFANKQDVKE  130 (177)
T ss_dssp             HTSGGGTT-------CEEEEEEECTTSTT
T ss_pred             hhcccccc-------eEEEEEEEcccccc
Confidence            77766665       78888888 99763

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.8e-05  Score=65.02  Aligned_cols=75  Identities=9%  Similarity=0.113  Sum_probs=57.5

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      .....+.+||.+|+...+..|..++.+++++|+|.|+++          ...+++....++.+.......+       .|
T Consensus        48 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~~~~~-------~p  110 (167)
T d1c1ya_          48 CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA----------QSTFNDLQDLREQILRVKDTED-------VP  110 (167)
T ss_dssp             SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHCCSC-------CC
T ss_pred             eeEEEeccccccCcccccccccccccccceeEEeeeccc----------hhhhHhHHHHHHHHHHhcCCCC-------Ce
Confidence            345679999999999999999999999999999999997          3445555666666654332233       78


Q ss_pred             EEEEec-cCccCc
Q 019426          298 ITAFVA-CEHVSG  309 (341)
Q Consensus       298 iilf~n-~d~~~~  309 (341)
                      ++|.+| +|+..+
T Consensus       111 ~ilvgnK~Dl~~~  123 (167)
T d1c1ya_         111 MILVGNKCDLEDE  123 (167)
T ss_dssp             EEEEEECTTCGGG
T ss_pred             EEEEEEecCcccc
Confidence            888888 998744

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2.9e-05  Score=65.87  Aligned_cols=90  Identities=12%  Similarity=0.171  Sum_probs=61.3

Q ss_pred             cccCeEEEEeccCCCcccCCceeEEEecCCccccc-cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHH
Q 019426          201 RTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDW  279 (341)
Q Consensus       201 ~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR-~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~  279 (341)
                      +|.|.+...+...   ...+..+.+||++|+...| ..|.+++..+++++||+|.++..         .-+.+..+.+..
T Consensus        30 ~t~~~~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~---------~~~~~~~~~l~~   97 (207)
T d2fh5b1          30 TSITDSSAIYKVN---NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ---------REVKDVAEFLYQ   97 (207)
T ss_dssp             CCCSCEEEEEECS---STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH---------HHHHHHHHHHHH
T ss_pred             CCeeEEEEEEEEe---eeeeeeeeeeeccccccccchhhhhhhhhccccceEEEccccc---------ccHHHHHHHHHH
Confidence            4555554444211   3456889999999997765 56888899999999999999731         124555555655


Q ss_pred             HhcCc-cccCccccCCceeEEEEec-cCccC
Q 019426          280 VLKQP-CFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       280 i~n~~-~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      ++... .+.+      ..|++|++| +|+..
T Consensus        98 ~l~~~~~~~~------~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          98 VLIDSMALKN------SPSLLIACNKQDIAM  122 (207)
T ss_dssp             HHHHHHTSTT------CCEEEEEEECTTSTT
T ss_pred             HHHhHHHhhc------CCcEEEEEECcccCC
Confidence            55433 2222      278999999 99974

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=2.4e-05  Score=64.78  Aligned_cols=73  Identities=14%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||.+|+...+..|..++.+++++|+|.|+++          ...+......+..+.......+       .|++
T Consensus        53 ~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~p~i  115 (173)
T d2fn4a1          53 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND----------RQSFNEVGKLFTQILRVKDRDD-------FPVV  115 (173)
T ss_dssp             EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHTSSC-------CCEE
T ss_pred             eeeeeccccccccccccccchhhccceeeeeeccccc----------ccccchhhhhhHHHHHHhccCC-------CceE
Confidence            3578899999999888999999999999999999997          3445555555555544322223       7888


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |.+| +|+..+
T Consensus       116 lvgnK~Dl~~~  126 (173)
T d2fn4a1         116 LVGNKADLESQ  126 (173)
T ss_dssp             EEEECGGGGGG
T ss_pred             EEEEeechhhc
Confidence            8888 998643

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2.7e-05  Score=64.29  Aligned_cols=75  Identities=8%  Similarity=0.126  Sum_probs=56.4

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      .....+.+||.+|+...+..|..++.+++++++|.|+++          ...+......+..+.......+       .|
T Consensus        49 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d----------~~Sf~~~~~~~~~i~~~~~~~~-------~p  111 (169)
T d1x1ra1          49 NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD----------KASFEHVDRFHQLILRVKDRES-------FP  111 (169)
T ss_dssp             TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHHTSSC-------CC
T ss_pred             cccccccccccccccccccchhhhhhhccEEEEeccccc----------chhhhccchhhHHHHhhccccC-------cc
Confidence            345788999999999999999999999999999999997          3445555555565544322222       68


Q ss_pred             EEEEec-cCccCc
Q 019426          298 ITAFVA-CEHVSG  309 (341)
Q Consensus       298 iilf~n-~d~~~~  309 (341)
                      ++|..| +|+...
T Consensus       112 ~ilvgnK~Dl~~~  124 (169)
T d1x1ra1         112 MILVANKVDLMHL  124 (169)
T ss_dssp             EEEEEECTTCSTT
T ss_pred             EEEEecccchhhh
Confidence            888888 998743

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.60  E-value=2.6e-05  Score=64.33  Aligned_cols=73  Identities=12%  Similarity=0.105  Sum_probs=53.4

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||.+|+...+..|..++.+++++|+|.|+++          ...++.....++.+.....-.+       .|+
T Consensus        50 ~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pi  112 (168)
T d1u8za_          50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITE----------MESFAATADFREQILRVKEDEN-------VPF  112 (168)
T ss_dssp             EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCCTT-------SCE
T ss_pred             ccccccccccccccchhhhhhhcccccceeEEEeeccc----------hhhhhhHHHHHHHHHHhhCCCC-------CcE
Confidence            34678999999998888889999999999999999997          3556666666666654322233       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       113 iivgnK~Dl~~  123 (168)
T d1u8za_         113 LLVGNKSDLED  123 (168)
T ss_dssp             EEEEECGGGGG
T ss_pred             EEEeccccccc
Confidence            88888 99863

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=4.4e-05  Score=62.75  Aligned_cols=71  Identities=7%  Similarity=0.108  Sum_probs=45.2

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||++||...+..|..++.+++++|+|+|+++.          ..+......+..+.....        ...|++
T Consensus        55 ~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~--------~~~~ii  116 (170)
T d2g6ba1          55 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK----------ASFDNIQAWLTEIHEYAQ--------HDVALM  116 (170)
T ss_dssp             EEEEEEEECCCC--------CCGGGCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSC--------TTCEEE
T ss_pred             EEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcc----------cchhhhhhhhhhhhhccC--------CCceEE
Confidence            36789999999999999999999999999999999873          445555555554443211        126777


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |..| +|...
T Consensus       117 lv~~k~d~~~  126 (170)
T d2g6ba1         117 LLGNKVDSAH  126 (170)
T ss_dssp             EEEECCSTTS
T ss_pred             EEEeeechhh
Confidence            7777 88763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=5.3e-05  Score=62.40  Aligned_cols=73  Identities=10%  Similarity=0.041  Sum_probs=52.4

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      .....+.+||++|+......|..++.+++++|+|+|+++.          .........+..+... ...+       .|
T Consensus        51 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~-------~p  112 (174)
T d2bmea1          51 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNALTNWLTDARML-ASQN-------IV  112 (174)
T ss_dssp             TEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTT-------CE
T ss_pred             CcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccc----------hhHHHHhhhhcccccc-cCCc-------eE
Confidence            3456799999999988888999999999999999999973          2233333344433321 1123       78


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++.+| +|+..
T Consensus       113 iivv~nK~D~~~  124 (174)
T d2bmea1         113 IILCGNKKDLDA  124 (174)
T ss_dssp             EEEEEECGGGGG
T ss_pred             EEEEEecccccc
Confidence            888888 99763

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=8.6e-05  Score=61.81  Aligned_cols=71  Identities=11%  Similarity=0.074  Sum_probs=52.6

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||.+|+...+..|..++.+++++|+|.|+++.          ..++.....+...+... -.+       .|+
T Consensus        48 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~Sf~~~~~~~~~~~~~~-~~~-------~~i  109 (179)
T d1m7ba_          48 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------ETLDSVLKKWKGEIQEF-CPN-------TKM  109 (179)
T ss_dssp             CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-CTT-------CEE
T ss_pred             eEEeeccccccccccccccccchhhhhhhhheeeecccC----------CCHHHHHHHHHHHHhcc-CCc-------ceE
Confidence            346788999999999888999999999999999999972          33444444454444311 112       788


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|..| +|+.
T Consensus       110 ilVgnK~Dl~  119 (179)
T d1m7ba_         110 LLVGCKSDLR  119 (179)
T ss_dssp             EEEEECGGGG
T ss_pred             EEEEeccccc
Confidence            98898 9975

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=5.6e-05  Score=62.34  Aligned_cols=71  Identities=10%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||++|+...+..|.+++.+++++|+|.|+++          ...+++....+..+.+... .+       .||
T Consensus        50 ~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~sf~~~~~~~~~~~~~~~-~~-------~pi  111 (173)
T d2a5ja1          50 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLTSWLEDARQHSS-SN-------MVI  111 (173)
T ss_dssp             EEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSC-TT-------CEE
T ss_pred             eEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecC----------hHHHHhHHHHHHHHHHhCC-CC-------CeE
Confidence            34678999999999999999999999999999999997          3556666666666644211 12       789


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|.+| +|.-
T Consensus       112 ilv~nK~D~~  121 (173)
T d2a5ja1         112 MLIGNKSDLE  121 (173)
T ss_dssp             EEEEECTTCG
T ss_pred             EEEecCCchh
Confidence            99998 9976

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00012  Score=59.74  Aligned_cols=72  Identities=11%  Similarity=-0.029  Sum_probs=54.4

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..+..++.+++++|+|.|+++          ...+......+..+.++..-.+       .|++
T Consensus        51 ~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------~pii  113 (167)
T d1xtqa1          51 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS----------IKSFEVIKVIHGKLLDMVGKVQ-------IPIM  113 (167)
T ss_dssp             EEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTC----------HHHHHHHHHHHHHHHHHHCSSC-------CCEE
T ss_pred             EEEeeecccccccccccccchhhhhhhhhhhhcccch----------hhhhhhhhhhhhhhhhcccccc-------ccee
Confidence            4678899999999888888899999999999999997          3445555555566654322122       6888


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |..| +|+..
T Consensus       114 lvgnK~Dl~~  123 (167)
T d1xtqa1         114 LVGNKKDLHM  123 (167)
T ss_dssp             EEEECTTCGG
T ss_pred             eecccccccc
Confidence            8888 99863

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=0.00016  Score=61.95  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=57.8

Q ss_pred             cccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHH
Q 019426          199 RVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFD  278 (341)
Q Consensus       199 r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~  278 (341)
                      |.-|....-..|      .+++.++.++|+.|.+...+.-+.-...+|++|+|||.++-           -...+.+.+.
T Consensus        51 rgiTi~~~~~~~------~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~G-----------v~~qt~~~~~  113 (204)
T d2c78a3          51 RGITINTAHVEY------ETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-----------PMPQTREHIL  113 (204)
T ss_dssp             HTCCCSCEEEEE------ECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-----------CCHHHHHHHH
T ss_pred             CCeEEEeeEEEE------EeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCC-----------CcHHHHHHHH
Confidence            344444455567      67889999999999987776666667789999999999862           2334555554


Q ss_pred             HHhcCccccCccccCCceeEEEEec-cCccC
Q 019426          279 WVLKQPCFEVFFCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       279 ~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~  308 (341)
                      -+-..    +      +.+|++|+| .|++.
T Consensus       114 ~~~~~----g------i~~iiv~iNK~D~~~  134 (204)
T d2c78a3         114 LARQV----G------VPYIVVFMNKVDMVD  134 (204)
T ss_dssp             HHHHT----T------CCCEEEEEECGGGCC
T ss_pred             HHHHc----C------CCeEEEEEEecccCC
Confidence            44331    1      245888898 99873

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.52  E-value=0.00018  Score=57.28  Aligned_cols=74  Identities=22%  Similarity=0.402  Sum_probs=60.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ....+.+.+||++|+...+..|.+++.+.+++++++|+++          ......+...+..+........       .
T Consensus        40 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~-------~  102 (160)
T d1r8sa_          40 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAEDELRD-------A  102 (160)
T ss_dssp             ECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC----------GGGHHHHHHHHHHHHTCGGGTT-------C
T ss_pred             eeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecC----------hHHHHHHHHHHHHHHHhhcccC-------c
Confidence            4567889999999999999999999999999999999987          3456777777888877665555       7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++.+| +|+.
T Consensus       103 ~i~~v~~k~d~~  114 (160)
T d1r8sa_         103 VLLVFANKQDLP  114 (160)
T ss_dssp             EEEEEEECTTST
T ss_pred             eEEEEeeccccc
Confidence            8888887 6665

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=8.1e-05  Score=61.46  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=55.0

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..|..++.+++++|+|+|+++          ...+......+..+.+... .+       .|++
T Consensus        52 ~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~----------~~S~~~~~~~~~~i~~~~~-~~-------~pii  113 (175)
T d2f9la1          52 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK----------HLTYENVERWLKELRDHAD-SN-------IVIM  113 (175)
T ss_dssp             EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC----------HHHHHTHHHHHHHHHHHSC-TT-------CEEE
T ss_pred             EEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCC----------cccchhHHHHHHHHHHhcC-CC-------CcEE
Confidence            4678999999999889999999999999999999997          2445555555555543211 12       7899


Q ss_pred             EEec-cCccCc
Q 019426          300 AFVA-CEHVSG  309 (341)
Q Consensus       300 lf~n-~d~~~~  309 (341)
                      |.+| +|+...
T Consensus       114 lvgnK~Dl~~~  124 (175)
T d2f9la1         114 LVGNKSDLRHL  124 (175)
T ss_dssp             EEEECTTCGGG
T ss_pred             EEEeeeccccc
Confidence            8888 998743

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3e-05  Score=64.66  Aligned_cols=71  Identities=11%  Similarity=0.171  Sum_probs=53.1

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.+||++||...+.-|.+++.+++++|+|.|+++.          ..+++....+..+..+....       ..|++|
T Consensus        64 ~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~-------~~~iil  126 (186)
T d2f7sa1          64 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ----------QSFLNVRNWMSQLQANAYCE-------NPDIVL  126 (186)
T ss_dssp             EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCH----------HHHHHHHHHHHTCCCCCTTT-------CCEEEE
T ss_pred             EEeccccCCcchhhHHHHHHHHhcCCEEEEEEecccc----------ccceeeeeccchhhhhccCC-------CceEEE
Confidence            5689999999999999999999999999999999872          44555444444444333222       278888


Q ss_pred             Eec-cCccC
Q 019426          301 FVA-CEHVS  308 (341)
Q Consensus       301 f~n-~d~~~  308 (341)
                      .+| +|+-.
T Consensus       127 v~nK~Dl~~  135 (186)
T d2f7sa1         127 IGNKADLPD  135 (186)
T ss_dssp             EEECTTCGG
T ss_pred             Eeeeccchh
Confidence            888 99863

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.0001  Score=59.85  Aligned_cols=71  Identities=17%  Similarity=0.136  Sum_probs=53.8

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+||...+..|..++.+++++|+|.|+++-          ..+......+..+..... .+       .|++
T Consensus        48 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~i~~~~~~~~~~~~-~~-------~~ii  109 (164)
T d1yzqa1          48 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNV----------NSFQQTTKWIDDVRTERG-SD-------VIIM  109 (164)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHT-TS-------SEEE
T ss_pred             ceeeeecccCCcchhccchHHHhhccceEEEeeccccc----------cchhhhHhhHHHHHHhcC-CC-------ceEE
Confidence            46789999999999999999999999999999999873          334444555555443211 12       7889


Q ss_pred             EEec-cCccC
Q 019426          300 AFVA-CEHVS  308 (341)
Q Consensus       300 lf~n-~d~~~  308 (341)
                      |.+| +|+.+
T Consensus       110 lvgnK~Dl~~  119 (164)
T d1yzqa1         110 LVGNKTDLAD  119 (164)
T ss_dssp             EEEECTTCGG
T ss_pred             EEecccchhh
Confidence            9988 99863

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00013  Score=59.73  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=54.8

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeE
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHI  298 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~i  298 (341)
                      ....+.+||.+||...+..|..++.+++++|+|+|+++.          ..+......+..+.+.. -.+       .|+
T Consensus        53 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~-~~~-------~~i  114 (170)
T d1r2qa_          53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE----------ESFARAKNWVKELQRQA-SPN-------IVI  114 (170)
T ss_dssp             EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTT-------CEE
T ss_pred             eEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchh----------hHHHHHHHHhhhhhhcc-CCC-------ceE
Confidence            346789999999999999999999999999999999973          34555555555554321 122       788


Q ss_pred             EEEec-cCccC
Q 019426          299 TAFVA-CEHVS  308 (341)
Q Consensus       299 ilf~n-~d~~~  308 (341)
                      +|.+| +|+..
T Consensus       115 ilvgnK~Dl~~  125 (170)
T d1r2qa_         115 ALSGNKADLAN  125 (170)
T ss_dssp             EEEEECGGGGG
T ss_pred             Eeecccccccc
Confidence            88888 99863

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0001  Score=60.25  Aligned_cols=72  Identities=10%  Similarity=0.042  Sum_probs=52.5

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      .....+.+||++||...+..|..++.+++++|+|.|+++.          ..+......+..+.+ .....       .|
T Consensus        50 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~-~~~~~-------~~  111 (166)
T d1z0fa1          50 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARN-LTNPN-------TV  111 (166)
T ss_dssp             TEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHH-HSCTT-------CE
T ss_pred             CEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCch----------HHHHHHHHHHHHHHh-hcccc-------ce
Confidence            3346899999999999999999999999999999999872          334444444444432 11222       78


Q ss_pred             EEEEec-cCcc
Q 019426          298 ITAFVA-CEHV  307 (341)
Q Consensus       298 iilf~n-~d~~  307 (341)
                      +++.+| +|+-
T Consensus       112 iilvgnK~Dl~  122 (166)
T d1z0fa1         112 IILIGNKADLE  122 (166)
T ss_dssp             EEEEEECTTCG
T ss_pred             EEEEcccccch
Confidence            888888 9974

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00016  Score=60.50  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=51.9

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      ...+.+||.+|+...+..|..+|.+++++|+|.|+++.          ..++...+.+..++... -.+       .|++
T Consensus        50 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~Sf~~~~~~~~~~~~~~-~~~-------~~i~  111 (191)
T d2ngra_          50 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP----------SSFENVKEKWVPEITHH-CPK-------TPFL  111 (191)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-CTT-------CCEE
T ss_pred             eeeeeccccccchhhhhhhhhcccccceeecccccchH----------HHHHHHHHHHHHHHhhc-CCC-------CceE
Confidence            35789999999998899999999999999999999973          33444444444443321 112       7888


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      +..| +|+.
T Consensus       112 lvgnK~Dl~  120 (191)
T d2ngra_         112 LVGTQIDLR  120 (191)
T ss_dssp             EEEECGGGG
T ss_pred             EEecccccc
Confidence            8888 9986

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=7.4e-05  Score=61.39  Aligned_cols=71  Identities=7%  Similarity=0.069  Sum_probs=48.6

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHIT  299 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~ii  299 (341)
                      .+.+.+||.+|+...+..+..++.+++++++|.|+++.          ..++.....+..+.......+       .|++
T Consensus        52 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~-------~p~i  114 (171)
T d2erya1          52 AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDR----------GSFEEIYKFQRQILRVKDRDE-------FPMI  114 (171)
T ss_dssp             EEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTSSC-------CSEE
T ss_pred             ccccccccccccccccccccccccccceEEEeeccccc----------cchhhHHHHhHHHHhhcccCC-------CCEE
Confidence            35789999999998888888899999999999999973          334444555555544322222       6778


Q ss_pred             EEec-cCcc
Q 019426          300 AFVA-CEHV  307 (341)
Q Consensus       300 lf~n-~d~~  307 (341)
                      |.+| +|+-
T Consensus       115 lvgnK~Dl~  123 (171)
T d2erya1         115 LIGNKADLD  123 (171)
T ss_dssp             EEEECTTCT
T ss_pred             EEEeccchh
Confidence            8787 9975

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=7e-05  Score=61.36  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=52.1

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCc-cccCccccCCceeE
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEVFFCATSALHI  298 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~-~f~~~~~~~~~~~i  298 (341)
                      ...+.+||.+|+...+..|..++.+++++|+|.|+++-          ..++.....+..+.... ...+       .|+
T Consensus        49 ~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~-------~pi  111 (171)
T d2erxa1          49 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR----------QSLEELKPIYEQICEIKGDVES-------IPI  111 (171)
T ss_dssp             EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHC---C-------CCE
T ss_pred             cceeccccccccccccccccccccceeEEEEEeecccc----------cchhcccchhhhhhhhhccCCC-------CcE
Confidence            35788899999999899999999999999999999972          34444455555554322 1222       788


Q ss_pred             EEEec-cCcc
Q 019426          299 TAFVA-CEHV  307 (341)
Q Consensus       299 ilf~n-~d~~  307 (341)
                      +|.+| +|+.
T Consensus       112 ilVgnK~Dl~  121 (171)
T d2erxa1         112 MLVGNKCDES  121 (171)
T ss_dssp             EEEEECGGGG
T ss_pred             EEEeeccccc
Confidence            88888 9985

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00014  Score=59.01  Aligned_cols=76  Identities=16%  Similarity=0.181  Sum_probs=55.6

Q ss_pred             ccCCceeEEEecCCccccc-cccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCc
Q 019426          217 KKSGEVYRLFDVGGQRNER-RKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSA  295 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR-~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~  295 (341)
                      ......+.+||..|+.... ..|..++.+++++|+|+|+++          .+.+++....+..+..+....+       
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~-------  109 (165)
T d1z06a1          47 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN----------MASFHSLPAWIEECKQHLLAND-------  109 (165)
T ss_dssp             TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC----------HHHHHTHHHHHHHHHHHCCCSC-------
T ss_pred             eccceEEEEEeccCchhhccccceeeecCCCceEEEEEeeh----------hhhhhhhhhhhHHHHhhccCCC-------
Confidence            3445678889998876554 457789999999999999997          3566666667777665433334       


Q ss_pred             eeEEEEec-cCccCc
Q 019426          296 LHITAFVA-CEHVSG  309 (341)
Q Consensus       296 ~~iilf~n-~d~~~~  309 (341)
                      .|++|.+| +|+..+
T Consensus       110 ~pi~lvgnK~Dl~~~  124 (165)
T d1z06a1         110 IPRILVGNKCDLRSA  124 (165)
T ss_dssp             CCEEEEEECTTCGGG
T ss_pred             CeEEEEeccccchhc
Confidence            78999998 998643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=0.00093  Score=52.68  Aligned_cols=85  Identities=16%  Similarity=0.284  Sum_probs=68.9

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|.+....      ...+..+.++|++|+......|.+++..++++++++|.++.          ..+.....++....
T Consensus        31 t~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------~~~~~~~~~~~~~~   94 (166)
T d2qtvb1          31 TWHPTSEEL------AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP----------ERFDEARVELDALF   94 (166)
T ss_dssp             CCSCEEEEE------CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCG----------GGHHHHHHHHHHHH
T ss_pred             eeeEeEEEe------ccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccch----------hhhhhhhHHHHhhh
Confidence            455666666      56778999999999999999999999999999999999973          44667778888888


Q ss_pred             cCccccCccccCCceeEEEEec-cCccCc
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                      +.....+       .|++++++ .|+...
T Consensus        95 ~~~~~~~-------~~i~i~~~k~d~~~~  116 (166)
T d2qtvb1          95 NIAELKD-------VPFVILGNKIDAPNA  116 (166)
T ss_dssp             TCTTTTT-------CCEEEEEECTTSSSC
T ss_pred             hhhccCC-------ceEEEEecccccccc
Confidence            8777666       78888887 887643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=0.00036  Score=57.78  Aligned_cols=72  Identities=11%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhc---CccccCccccCCc
Q 019426          219 SGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK---QPCFEVFFCATSA  295 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n---~~~f~~~~~~~~~  295 (341)
                      ....+.+||.+|+...+..|..++.+++++|+|+|.++-          +.+......++.+..   .....+       
T Consensus        49 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~-------  111 (184)
T d1vg8a_          49 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAP----------NTFKTLDSWRDEFLIQASPRDPEN-------  111 (184)
T ss_dssp             CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSSGGG-------
T ss_pred             ceEEEEeeecCCcccccccccccccCccEEEEeecccch----------hhhhcchhhHHHHHHHhccccccC-------
Confidence            346789999999999999999999999999999999862          333333333444433   222223       


Q ss_pred             eeEEEEec-cCcc
Q 019426          296 LHITAFVA-CEHV  307 (341)
Q Consensus       296 ~~iilf~n-~d~~  307 (341)
                      .|++|.+| +|+-
T Consensus       112 ip~ilv~nK~Dl~  124 (184)
T d1vg8a_         112 FPFVVLGNKIDLE  124 (184)
T ss_dssp             SCEEEEEECTTSS
T ss_pred             CCEEEEEEeeccc
Confidence            78999998 9975

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.0006  Score=55.50  Aligned_cols=72  Identities=8%  Similarity=0.151  Sum_probs=52.3

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      .....+.+||.+|+......|..++.+++++|+|.|+++          ...+......+..+.... -       ...|
T Consensus        49 ~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~-~-------~~~~  110 (170)
T d1ek0a_          49 EHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTK----------PQSFIKARHWVKELHEQA-S-------KDII  110 (170)
T ss_dssp             TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC----------HHHHHHHHHHHHHHHHHS-C-------TTCE
T ss_pred             cccccccccccCCchhHHHHHHHHHhccceEEEEEeCCc----------ccchhhhhhhhhhhcccc-c-------cccc
Confidence            344689999999999888899999999999999999997          244554444444333211 1       2267


Q ss_pred             EEEEec-cCcc
Q 019426          298 ITAFVA-CEHV  307 (341)
Q Consensus       298 iilf~n-~d~~  307 (341)
                      +++..| +|+.
T Consensus       111 ~~~v~nk~d~~  121 (170)
T d1ek0a_         111 IALVGNKIDML  121 (170)
T ss_dssp             EEEEEECGGGG
T ss_pred             eeeeecccccc
Confidence            777787 8876

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00054  Score=57.24  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             ccCCceeEEEecCCccccccccccccC----CccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh---cCccccCc
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFE----GVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL---KQPCFEVF  289 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~----~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~---n~~~f~~~  289 (341)
                      ...+..+.+||++|+...+..|.+++.    .++.++++++.++-.         ..+.+....+..++   ....-.+ 
T Consensus        42 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~-  111 (209)
T d1nrjb_          42 DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---------KKLTTTAEFLVDILSITESSCENG-  111 (209)
T ss_dssp             TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT---------TCCHHHHHHHHHHHHHHHHHSTTC-
T ss_pred             EeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEeccc---------ccHHHHHHHHHHHHHHHHHHHhcc-
Confidence            577888999999999999999988764    468899999988632         22333333332222   2222223 


Q ss_pred             cccCCceeEEEEec-cCccC
Q 019426          290 FCATSALHITAFVA-CEHVS  308 (341)
Q Consensus       290 ~~~~~~~~iilf~n-~d~~~  308 (341)
                            .||++++| +|++.
T Consensus       112 ------~piiiv~NK~D~~~  125 (209)
T d1nrjb_         112 ------IDILIACNKSELFT  125 (209)
T ss_dssp             ------CCEEEEEECTTSTT
T ss_pred             ------CCeEEEEEeecccc
Confidence                  78999999 99984

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.78  E-value=0.00023  Score=58.06  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      .||+|.|++||||||++|.+--
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999998753

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.74  E-value=0.0025  Score=51.28  Aligned_cols=75  Identities=20%  Similarity=0.453  Sum_probs=58.2

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+..+..+|++|+...+..|.+++...+++++++|+++.          ....+....+......+...+       .
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~----------~~~~~~~~~~~~~~~~~~~~~-------~  115 (186)
T d1f6ba_          53 TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADH----------ERLLESKEELDSLMTDETIAN-------V  115 (186)
T ss_dssp             EETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGGGTT-------S
T ss_pred             EecccccccccccchhhhhhHHhhhhcccceeeeeeeccCc----------cchHHHHHHHHHhhcccccCC-------C
Confidence            34567788999999999999999999999999999999973          567777777777777776666       7


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |++|..| +|+..
T Consensus       116 ~~li~~~K~D~~~  128 (186)
T d1f6ba_         116 PILILGNKIDRPE  128 (186)
T ss_dssp             CEEEEEECTTSTT
T ss_pred             ceEEEEeccCccc
Confidence            8888887 88753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.00039  Score=57.45  Aligned_cols=26  Identities=58%  Similarity=0.874  Sum_probs=22.6

Q ss_pred             cccceEEeccCCCcchhHHHHHHhhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +++||+|||.+++|||||++++..-+
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999986443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.53  E-value=0.011  Score=46.49  Aligned_cols=83  Identities=17%  Similarity=0.267  Sum_probs=63.1

Q ss_pred             ccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHh
Q 019426          202 TTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVL  281 (341)
Q Consensus       202 T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~  281 (341)
                      |.|.....+      ...+..+.++|.+|....+..|.+++..++++++++|+.+.          .........+....
T Consensus        36 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~   99 (169)
T d1upta_          36 TIGFNVETV------TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDR----------DRIGISKSELVAML   99 (169)
T ss_dssp             CSSEEEEEE------EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCC----------TTHHHHHHHHHHHH
T ss_pred             ccceeeeee------ccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhc----------chhhhccchhhhhh
Confidence            444555555      56678999999999999999999999999999999998863          44556666666666


Q ss_pred             cCccccCccccCCceeEEEEec-cCcc
Q 019426          282 KQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       282 n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      .......       .|+++..| .|+.
T Consensus       100 ~~~~~~~-------~~i~iv~nk~Dl~  119 (169)
T d1upta_         100 EEEELRK-------AILVVFANKQDME  119 (169)
T ss_dssp             TCGGGTT-------CEEEEEEECTTST
T ss_pred             hhhcccc-------ceEEEEEeecccc
Confidence            6554444       77877777 8886

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0031  Score=51.91  Aligned_cols=32  Identities=16%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             CceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          220 GEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       220 ~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+.+||.+|+...     +++.+++++|+|.|+++
T Consensus        51 ~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~   82 (175)
T d2bmja1          51 THLVLIREEAGAPDA-----KFSGWADAVIFVFSLED   82 (175)
T ss_dssp             EEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTC
T ss_pred             EEEEEEeeccccccc-----ccccccceeEEEeeccc
Confidence            367899999998643     36889999999999997

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.43  E-value=0.0005  Score=55.76  Aligned_cols=24  Identities=38%  Similarity=0.679  Sum_probs=21.2

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ++..||+|+|.+++|||||+.++.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~   34 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLK   34 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHh
Confidence            456899999999999999998863

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.38  E-value=0.00063  Score=55.26  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=22.0

Q ss_pred             hhcccceEEeccCCCcchhHHHHHH
Q 019426           44 EKHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        44 ~~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .++..||+++|.+++|||||++++.
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~   36 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFS   36 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHh
Confidence            3667899999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.30  E-value=0.00076  Score=54.13  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      .+|+|.|++||||||+++.+.-
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998853

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.00065  Score=54.75  Aligned_cols=26  Identities=27%  Similarity=0.575  Sum_probs=22.4

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhhc
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      .-+|++.|+.||||||++|.+.-.++
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34899999999999999999886554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.25  E-value=0.00083  Score=54.37  Aligned_cols=22  Identities=36%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ++||+++|++++|||||++++.
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~   23 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIA   23 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHH
Confidence            5799999999999999999874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.00084  Score=54.15  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      |.+||+++|.+++|||||++++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~   22 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRF   22 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEEEECCCCcCHHHHHHHH
Confidence            4579999999999999999975

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.16  E-value=0.001  Score=53.63  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             ccceEEeccCCCcchhHHHHHHh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      ..+|+|.|++||||||+.+.+.-
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            46899999999999999999853

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.16  E-value=0.00096  Score=53.08  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=19.9

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      +++||+++|.+++|||||++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~   25 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRL   25 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHH
Confidence            5689999999999999999974

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.10  E-value=0.001  Score=55.11  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .++|+|+|++||||||+++.+.--+
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999886444

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0011  Score=52.09  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .|+|.|++||||||+.|.+.-.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988643

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.06  E-value=0.0011  Score=54.12  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+|+|+.||||||+++.+.--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999886545

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.04  E-value=0.0012  Score=52.63  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      |+|.|++||||||+++++.-.+
T Consensus         5 I~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999987554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.03  E-value=0.0012  Score=52.25  Aligned_cols=19  Identities=37%  Similarity=0.508  Sum_probs=16.9

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      |+|.|++||||||+++.+.
T Consensus         5 Iii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6789999999999999763

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.00  E-value=0.00099  Score=54.78  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=21.0

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ++.+||+++|.+++|||||++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHT
T ss_pred             CceEEEEEECCCCCCHHHHHHHH
Confidence            56789999999999999999986

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.99  E-value=0.0013  Score=51.99  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=18.4

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+|+|.+++|||||++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l   20 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKL   20 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.01  Score=48.20  Aligned_cols=72  Identities=15%  Similarity=0.128  Sum_probs=45.5

Q ss_pred             cCCceeEEEecCCccccccccc--------cccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCc
Q 019426          218 KSGEVYRLFDVGGQRNERRKWI--------HLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVF  289 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~--------~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~  289 (341)
                      ..+..+.++|+.|+......+.        .++.++++||||+|.++-            ..+....+..++. ....+ 
T Consensus        50 ~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~------------~~~~~~~i~~~l~-~~~~~-  115 (178)
T d1wf3a1          50 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP------------PTPEDELVARALK-PLVGK-  115 (178)
T ss_dssp             ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC------------CCHHHHHHHHHHG-GGTTT-
T ss_pred             eeeeeeeecccccccccccccchhcccccccccccccceeeeechhhh------------hcccccchhhhee-ccccc-
Confidence            4567899999999865444442        346789999999998752            1111222223332 11223 


Q ss_pred             cccCCceeEEEEec-cCccCc
Q 019426          290 FCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       290 ~~~~~~~~iilf~n-~d~~~~  309 (341)
                            .|+++.+| +|++..
T Consensus       116 ------~piilv~NK~Dl~~~  130 (178)
T d1wf3a1         116 ------VPILLVGNKLDAAKY  130 (178)
T ss_dssp             ------SCEEEEEECGGGCSS
T ss_pred             ------hhhhhhhcccccccC
Confidence                  68888888 999743

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.79  E-value=0.0017  Score=54.29  Aligned_cols=26  Identities=31%  Similarity=0.491  Sum_probs=22.4

Q ss_pred             cccceEEeccCCCcchhHHHHHHhhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +..+|+|+|+.||||||+.+.+.--|
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999886444

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.74  E-value=0.002  Score=52.48  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=21.3

Q ss_pred             hhcccceEEeccCCCcchhHHHHH
Q 019426           44 EKHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        44 ~~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      -++.+||+++|.+++|||||++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl   32 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKL   32 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHT
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHH
Confidence            356789999999999999999975

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0017  Score=52.86  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +.+||+|+|.+++|||||++++.
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~   26 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFI   26 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHH
Confidence            44799999999999999999763

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0018  Score=52.98  Aligned_cols=24  Identities=33%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .||+++|+.||||||+++.+.--+
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999886444

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.002  Score=50.57  Aligned_cols=20  Identities=45%  Similarity=0.815  Sum_probs=18.2

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      ||+|+|.+++|||||+..+.
T Consensus         2 KI~liG~~nvGKSSLln~l~   21 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLK   21 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            89999999999999998754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.70  E-value=0.0019  Score=53.09  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.3

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +|+|+|+.||||||+++.+.--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999887554

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0017  Score=52.44  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.9

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      +..||+|+|..++|||||++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~   24 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQF   24 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHH
Confidence            4579999999999999999975

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.66  E-value=0.0021  Score=51.41  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-|+|.|.+||||||+.+.+.
T Consensus         7 ~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999998886

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.002  Score=52.57  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=19.9

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      +.+||+|+|.+++|||||++++
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~   26 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQF   26 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHH
T ss_pred             CeEEEEEECCCCcCHHHHHHHH
Confidence            4689999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0021  Score=53.19  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..|+|+|++||||||+++.+.--+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999885444

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.62  E-value=0.0022  Score=52.64  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+|+|+|+.||||||+.+.+.--+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            379999999999999999986554

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0022  Score=51.94  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=19.2

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      ++||+++|.+++|||||++++
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~   22 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRF   22 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            579999999999999999875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.61  E-value=0.013  Score=50.07  Aligned_cols=71  Identities=11%  Similarity=0.019  Sum_probs=51.1

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ..++..+.++|+.|+...-+........+|.+|+|||..+           .-......++..+...    +       .
T Consensus        66 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~-----------g~~~~~~~~~~~~~~~----~-------~  123 (227)
T d1g7sa4          66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINE-----------GFKPQTQEALNILRMY----R-------T  123 (227)
T ss_dssp             GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTT-----------CCCHHHHHHHHHHHHT----T-------C
T ss_pred             cccccccccccccceecccccchhcccccceEEEEEeccc-----------CcccchhHHHHHhhcC----C-------C
Confidence            4566778999999987665555556778999999999875           1234455666555432    3       7


Q ss_pred             eEEEEec-cCccCc
Q 019426          297 HITAFVA-CEHVSG  309 (341)
Q Consensus       297 ~iilf~n-~d~~~~  309 (341)
                      |++|++| +|++..
T Consensus       124 p~iivlNK~D~~~~  137 (227)
T d1g7sa4         124 PFVVAANKIDRIHG  137 (227)
T ss_dssp             CEEEEEECGGGSTT
T ss_pred             eEEEEEECccCCCc
Confidence            8999999 999743

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0022  Score=52.70  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .||+|+|+.||||||+++.+.--+
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999886444

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0024  Score=51.60  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +..||+++|.+++|||+|++++.
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~   24 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFV   24 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999999753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0023  Score=51.99  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+||+|+|..++|||||++++.
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~   26 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFI   26 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            4799999999999999999863

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.53  E-value=0.0023  Score=53.00  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .-|+|+|++||||||+++++.--+
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            357999999999999999986444

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.0024  Score=52.67  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=24.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc-CCCCHHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ-TGFDEAELKSY   83 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~-~~~~~~e~~~~   83 (341)
                      .=|++.|.+||||||+++++.-..+ .-++.++...+
T Consensus        15 ~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~   51 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSW   51 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHH
Confidence            4689999999999999998743221 11355655443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0026  Score=50.96  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=17.7

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -|+|.|++|+||||+++++-
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            37999999999999999864

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.48  E-value=0.0027  Score=50.70  Aligned_cols=24  Identities=25%  Similarity=0.625  Sum_probs=19.0

Q ss_pred             ceEEe-ccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLL-GAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLll-G~~eSGKST~~kq~~~~~~   72 (341)
                      |+++| |++||||||++|.+.-...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45555 9999999999999876543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.47  E-value=0.0028  Score=52.39  Aligned_cols=25  Identities=36%  Similarity=0.433  Sum_probs=21.6

Q ss_pred             ccceEEeccCCCcchhHHHHHHhhh
Q 019426           47 IQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ..+|+|.|+.||||||+++.+.--+
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999886544

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0028  Score=50.74  Aligned_cols=20  Identities=30%  Similarity=0.552  Sum_probs=17.3

Q ss_pred             eEEeccCCCcchhHHHHHHh
Q 019426           50 LLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~   69 (341)
                      ++|.|++||||||++|.+.-
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0028  Score=51.38  Aligned_cols=21  Identities=24%  Similarity=0.615  Sum_probs=19.3

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+||+++|.+++|||||++++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l   25 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRF   25 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHH
Confidence            479999999999999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.003  Score=50.31  Aligned_cols=73  Identities=16%  Similarity=0.204  Sum_probs=43.8

Q ss_pred             cCCceeEEEecCCccccccc--------cccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCc
Q 019426          218 KSGEVYRLFDVGGQRNERRK--------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVF  289 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~k--------W~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~  289 (341)
                      ..+..+.++|.+|.......        ...++.+++.++|++|.++.+.           .+...++..++.. .-.+ 
T Consensus        46 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~-----------~~~~~~~~~~~~~-~~~~-  112 (161)
T d2gj8a1          46 IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA-----------VDPAEIWPEFIAR-LPAK-  112 (161)
T ss_dssp             ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC-----------CSHHHHCHHHHHH-SCTT-
T ss_pred             ccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccc-----------hhhhhhhhhhhhh-cccc-
Confidence            45567788888886443322        2345778999999999887432           1112223333221 1112 


Q ss_pred             cccCCceeEEEEec-cCccCc
Q 019426          290 FCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       290 ~~~~~~~~iilf~n-~d~~~~  309 (341)
                            .|+++.+| +|+...
T Consensus       113 ------~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1         113 ------LPITVVRNKADITGE  127 (161)
T ss_dssp             ------CCEEEEEECHHHHCC
T ss_pred             ------cceeeccchhhhhhh
Confidence                  78888888 998743

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.003  Score=51.86  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=19.7

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+||+++|..++|||||++++
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l   25 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRY   25 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHH
Confidence            3579999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.31  E-value=0.0034  Score=50.77  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .+|+|+|.+||||||+.|.+.-..
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999986443

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0032  Score=55.17  Aligned_cols=24  Identities=33%  Similarity=0.527  Sum_probs=21.4

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -++.|+|++|||||||+|.+--++
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            379999999999999999987666

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.26  E-value=0.0034  Score=50.90  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=19.7

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..||+|+|.+++|||||++++.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~   25 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFM   25 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHH
Confidence            4699999999999999999863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.25  E-value=0.0034  Score=51.54  Aligned_cols=20  Identities=30%  Similarity=0.632  Sum_probs=18.7

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+++|..++|||||++++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l   22 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQY   22 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHH
Confidence            69999999999999999975

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0035  Score=50.33  Aligned_cols=21  Identities=29%  Similarity=0.556  Sum_probs=18.8

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .||+++|..++|||||++++.
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~   21 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFM   21 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHH
Confidence            489999999999999999753

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0037  Score=49.76  Aligned_cols=19  Identities=26%  Similarity=0.450  Sum_probs=17.2

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      +.+.|.+|||||||++.+-
T Consensus         5 i~itG~~GSGKTTL~~~L~   23 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLI   23 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6889999999999999874

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.17  E-value=0.0039  Score=51.27  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=17.4

Q ss_pred             eEEeccCCCcchhHHHHHHh
Q 019426           50 LLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~   69 (341)
                      |+|+|++||||||+++.+.-
T Consensus         5 ivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67889999999999998753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0038  Score=50.30  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=19.5

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..||+|+|.+++|||||++++.
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~   25 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFT   25 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            4799999999999999998753

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.14  E-value=0.0036  Score=54.77  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=21.4

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      ++.|+|++||||||++|.+--++.
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhC
Confidence            789999999999999999876663

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.13  E-value=0.004  Score=49.89  Aligned_cols=19  Identities=53%  Similarity=0.616  Sum_probs=16.9

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      |+|.|++||||||+++.+.
T Consensus         7 I~l~G~~GsGKSTia~~La   25 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALA   25 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999999885

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0037  Score=55.04  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=22.0

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      -++.|+|++||||||++|.+--++.
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccC
Confidence            3799999999999999999887663

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.13  E-value=0.0039  Score=50.67  Aligned_cols=21  Identities=19%  Similarity=0.442  Sum_probs=18.6

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .|+|+|.+||||||+.|.+.-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999953

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.13  E-value=0.0038  Score=55.00  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=21.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhhc
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      ++.|+|++||||||++|.+--++.
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEECCCCChHHHHHHHHhcccC
Confidence            799999999999999999876663

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0039  Score=51.72  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      .-|+|+|++||||||+++.+.-.|
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999986555

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.004  Score=50.83  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.7

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+||+++|..++|||||++++.
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~   28 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFT   28 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHH
Confidence            4799999999999999999753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.004  Score=50.39  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.6

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..||+++|..++|||||+.++.
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            4699999999999999999753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.01  E-value=0.0044  Score=50.03  Aligned_cols=22  Identities=41%  Similarity=0.542  Sum_probs=19.6

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+||+++|..++|||||++++.
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~   24 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFV   24 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHH
Confidence            4799999999999999999853

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.0048  Score=51.14  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=18.0

Q ss_pred             eEEeccCCCcchhHHHHHHh
Q 019426           50 LLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~   69 (341)
                      |+|+|++||||+||++++.-
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0043  Score=51.33  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      .+||+|+|.+++|||+|+.++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~   23 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISY   23 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHH
Confidence            589999999999999999875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.00  E-value=0.0058  Score=49.74  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=17.8

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      =|.|-|++||||||+++++.-
T Consensus        24 iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366889999999999998863

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.99  E-value=0.0044  Score=52.57  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            57899999999999999886544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.98  E-value=0.02  Score=50.92  Aligned_cols=89  Identities=10%  Similarity=0.044  Sum_probs=64.6

Q ss_pred             CCccCcccceeccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCC
Q 019426          187 NYVPTKDDVLYARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQ  266 (341)
Q Consensus       187 ~Y~Pt~~DIl~~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~  266 (341)
                      ||.|-+    +.|.-|+...-..|      .+++.++.++|+.|......--.....-+++.|+|||.++          
T Consensus        47 D~~~~E----~~r~~si~~~~~~~------~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~----------  106 (276)
T d2bv3a2          47 DFMEQE----RERGITITAAVTTC------FWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ----------  106 (276)
T ss_dssp             ------------CCCCCCCSEEEE------EETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTT----------
T ss_pred             eccHHH----HhcCCccccceeee------ccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccC----------
Confidence            455544    35566777777778      7899999999999987766655666777999999999986          


Q ss_pred             ccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCcc
Q 019426          267 KNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       267 ~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                       .--..+..+|+..-..    +       .|.++|+| .|..
T Consensus       107 -Gv~~~T~~~w~~a~~~----~-------lP~i~fINKmDr~  136 (276)
T d2bv3a2         107 -GVEPQSETVWRQAEKY----K-------VPRIAFANKMDKT  136 (276)
T ss_dssp             -SSCHHHHHHHHHHHTT----T-------CCEEEEEECTTST
T ss_pred             -CcchhHHHHHHHHHHc----C-------CCEEEEEeccccc
Confidence             5566778888777553    2       79999999 9985

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.95  E-value=0.0046  Score=51.12  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      =|+|+|-+||||||+++++..
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998863

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.0047  Score=49.93  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=19.7

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ...||+++|.+++|||||++++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~   26 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRF   26 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEEECCCCcCHHHHHHHH
Confidence            3579999999999999999975

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.94  E-value=0.006  Score=50.52  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -|+|+|++||||||+++.+.--|
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999886444

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0046  Score=50.34  Aligned_cols=20  Identities=30%  Similarity=0.622  Sum_probs=18.3

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      .||+++|.+++|||||++++
T Consensus         3 ~KivvvG~~~vGKTsLi~~~   22 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVN   22 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHH
Confidence            59999999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0048  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+|++++|..++|||||++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~   24 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRF   24 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHH
Confidence            3479999999999999999875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.92  E-value=0.0046  Score=50.76  Aligned_cols=20  Identities=20%  Similarity=0.572  Sum_probs=18.5

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+++|..|+|||+|++++
T Consensus         3 ~KivliG~~~vGKTsli~r~   22 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVF   22 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHH
Confidence            69999999999999999865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0049  Score=49.86  Aligned_cols=20  Identities=45%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      .||+++|.+++|||||++++
T Consensus         2 fKi~lvG~~~vGKTsLi~~~   21 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIF   21 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHH
Confidence            69999999999999999875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.0051  Score=53.52  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+.-+.
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999886554

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.005  Score=49.97  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=18.4

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+++|.+++|||||++++
T Consensus         4 ~KivvvG~~~vGKTsli~r~   23 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQF   23 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHH
Confidence            69999999999999999864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.86  E-value=0.0035  Score=50.97  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=12.1

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ....||+++|.+++|||||+.++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l   26 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRF   26 (173)
T ss_dssp             SEEEEEEEECCCCC---------
T ss_pred             cEEEEEEEECCCCcCHHHHHHHH
Confidence            34579999999999999999875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.0053  Score=50.46  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+||+++|.+++|||||++++
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~   25 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRF   25 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHH
Confidence            3589999999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.82  E-value=0.0059  Score=50.81  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=17.9

Q ss_pred             eEEeccCCCcchhHHHHHHh
Q 019426           50 LLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~   69 (341)
                      |+|.|++||||+|+++++.-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.80  E-value=0.0055  Score=53.58  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35689999999999999987554

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.79  E-value=0.0055  Score=49.66  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=19.1

Q ss_pred             ccceEEeccCCCcchhHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..||+++|..++|||||++++
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~   24 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQF   24 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHH
Confidence            579999999999999999875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.0036  Score=51.14  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.6

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-|+|.|.+||||||+++.+.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457889999999999999885

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.74  E-value=0.0058  Score=49.35  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      .|+|+|.+||||||+.|.+.--
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.73  E-value=0.0055  Score=53.22  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||+++.+.-+.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            57899999999999999887554

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0057  Score=50.35  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+||+|+|.+++|||||++++
T Consensus         8 ~~~Ki~lvG~~~vGKTsLi~r~   29 (185)
T d2atxa1           8 LMLKCVVVGDGAVGKTCLLMSY   29 (185)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHH
Confidence            4579999999999999999874

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.68  E-value=0.0044  Score=54.70  Aligned_cols=25  Identities=24%  Similarity=0.518  Sum_probs=21.6

Q ss_pred             cceEEeccCCCcchhHHHHHHhhhc
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~~   72 (341)
                      -++.|+|++||||||++|.+--++.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcCC
Confidence            3899999999999999998876653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0048  Score=50.07  Aligned_cols=20  Identities=45%  Similarity=0.720  Sum_probs=18.4

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      .||+++|..++|||||++++
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~   23 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRH   23 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTT
T ss_pred             EEEEEECCCCcCHHHHHHHH
Confidence            69999999999999999864

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0065  Score=50.24  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=18.2

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      |+|+|++||||+||++.+.--+
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7889999999999998765333

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.63  E-value=0.012  Score=51.54  Aligned_cols=26  Identities=27%  Similarity=0.524  Sum_probs=21.8

Q ss_pred             HHhhcccceEEeccCCCcchhHHHHH
Q 019426           42 KAEKHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        42 ~~~~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      +..+..++|+|+|..|+||||+++.+
T Consensus        27 ~~~~~~l~I~LvG~tg~GKSSliN~i   52 (257)
T d1h65a_          27 QEDVNSLTILVMGKGGVGKSSTVNSI   52 (257)
T ss_dssp             HTTCCEEEEEEEESTTSSHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCcHHHHHHHH
Confidence            33456789999999999999998864

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0064  Score=53.16  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+.-+.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999987554

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.39  E-value=0.0079  Score=52.51  Aligned_cols=23  Identities=39%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            57899999999999999987554

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.35  E-value=0.016  Score=49.17  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHHhhh
Q 019426           32 EIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        32 ~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ++...|+.-+...+...-+|+.|++|+||||+++.+.-.+
T Consensus        20 ~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          20 KLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             HHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhcc
Confidence            4444554444443344569999999999999999876443

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=94.32  E-value=0.0084  Score=52.37  Aligned_cols=23  Identities=35%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999886444

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.31  E-value=0.008  Score=53.64  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      ++.|+|++||||||++|.+--++
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68999999999999999886444

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.28  E-value=0.0055  Score=53.66  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=20.7

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||+++.+--+.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            68999999999999999988665

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.25  E-value=0.0086  Score=47.93  Aligned_cols=20  Identities=15%  Similarity=0.122  Sum_probs=17.2

Q ss_pred             eEEeccCCCcchhHHHHHHh
Q 019426           50 LLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~   69 (341)
                      |+|.|+.||||||+++.+.-
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56779999999999998853

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.23  E-value=0.0067  Score=52.66  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            47899999999999999987554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.0082  Score=51.98  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+.-+.
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999886543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=94.03  E-value=0.0098  Score=50.17  Aligned_cols=19  Identities=26%  Similarity=0.552  Sum_probs=17.2

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      ++++|+.||||||+++.+.
T Consensus         3 i~v~G~~GsGKTTLl~~ll   21 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFG   21 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHH
Confidence            6899999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.02  E-value=0.019  Score=50.53  Aligned_cols=39  Identities=28%  Similarity=0.273  Sum_probs=24.8

Q ss_pred             hcHHHHHHHHHHHHHh-hcccceEEeccCCCcchhHHHHH
Q 019426           29 QTAEIERRIEQETKAE-KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        29 ~s~~Id~~L~~~~~~~-~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      |..++|+.++.=.+.. ....-|.|.|.||.||||+++++
T Consensus        25 R~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v   64 (277)
T d2a5yb3          25 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQA   64 (277)
T ss_dssp             CHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHH
Confidence            3445555544322222 22334679999999999999986

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.02  E-value=0.0097  Score=49.01  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.3

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+|+|+|..++|||||++.+-
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhc
Confidence            3489999999999999999763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.99  E-value=0.011  Score=48.87  Aligned_cols=22  Identities=18%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +..|+|+|.+++|||||++++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~   24 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLT   24 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3589999999999999999874

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.95  E-value=0.011  Score=47.65  Aligned_cols=19  Identities=37%  Similarity=0.775  Sum_probs=17.6

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      +|+++|..++|||||++++
T Consensus         2 ~V~liG~~n~GKSsLi~~L   20 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKL   20 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999975

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.86  E-value=0.011  Score=51.50  Aligned_cols=23  Identities=35%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--++
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999987554

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.85  E-value=0.012  Score=49.25  Aligned_cols=24  Identities=38%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             cceEEeccCCCcchhHHHHHHhhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      +.|.|-|++||||||+++.+.--+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            467788999999999999987555

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.011  Score=47.96  Aligned_cols=34  Identities=9%  Similarity=0.094  Sum_probs=20.8

Q ss_pred             eEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          223 YRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       223 ~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+++..++......+..+.++++.++||+|.+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~  103 (186)
T d1mkya2          70 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ  103 (186)
T ss_dssp             --------CCSCCHHHHHHHHHCSEEEEEEETTT
T ss_pred             ccccccccccchhHHHHHHHhcCCEEEEeecccc
Confidence            3445555666666677777788999999999875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.79  E-value=0.0061  Score=48.34  Aligned_cols=20  Identities=25%  Similarity=0.654  Sum_probs=18.2

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+|+|.+++|||||++.+
T Consensus         1 ikI~liG~~n~GKSSLin~l   20 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRL   20 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            48999999999999999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.0094  Score=47.88  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      +..||+|+|.+++|||||++.+
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L   36 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTL   36 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHH
Confidence            4579999999999999999976

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=93.72  E-value=0.013  Score=47.13  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=17.4

Q ss_pred             ceE-EeccCCCcchhHHHHHHh
Q 019426           49 KLL-LLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiL-llG~~eSGKST~~kq~~~   69 (341)
                      |++ +.|..||||||+++.+.-
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            554 569999999999999853

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.65  E-value=0.012  Score=51.72  Aligned_cols=23  Identities=35%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999987554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.014  Score=48.79  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=17.8

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -|.|-|++||||||+.+.+.-
T Consensus         4 iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.52  E-value=0.015  Score=48.35  Aligned_cols=20  Identities=30%  Similarity=0.630  Sum_probs=18.4

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      +|+|+|.+++|||||++++.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~   21 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLL   21 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999875

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.47  E-value=0.051  Score=47.81  Aligned_cols=82  Identities=12%  Similarity=0.031  Sum_probs=61.1

Q ss_pred             ccccccCeEEEEeccCCCcccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHH
Q 019426          198 ARVRTTGVVEIQFSPVGEHKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELF  277 (341)
Q Consensus       198 ~r~~T~Gi~e~~f~~~~~~~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF  277 (341)
                      .|.-|....-..|      .+++.++.++|+.|......-=.....-+|+.|+|||..+           .-...+..+|
T Consensus        50 ~r~~ti~~~~~~~------~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~-----------Gv~~~t~~~~  112 (267)
T d2dy1a2          50 LHRTTVRTGVAPL------LFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA-----------GVQVGTERAW  112 (267)
T ss_dssp             HTTSCCSCEEEEE------EETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHH
T ss_pred             HhCCeEEeecccc------cccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccC-----------CccchhHHHH
Confidence            4455555556677      7889999999999987655444455667899999999885           4567777888


Q ss_pred             HHHhcCccccCccccCCceeEEEEec-cCcc
Q 019426          278 DWVLKQPCFEVFFCATSALHITAFVA-CEHV  307 (341)
Q Consensus       278 ~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~  307 (341)
                      +.+-...           .|+++|.| +|..
T Consensus       113 ~~~~~~~-----------~p~~i~iNk~D~~  132 (267)
T d2dy1a2         113 TVAERLG-----------LPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHTT-----------CCEEEEEECGGGC
T ss_pred             Hhhhhcc-----------ccccccccccccc
Confidence            7665532           78899998 8874

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.40  E-value=0.016  Score=46.54  Aligned_cols=19  Identities=26%  Similarity=0.520  Sum_probs=16.1

Q ss_pred             ce-EEeccCCCcchhHHHHH
Q 019426           49 KL-LLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 ki-LllG~~eSGKST~~kq~   67 (341)
                      || .+.|..||||||++..+
T Consensus         2 kii~I~G~~gSGKTTli~~l   21 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKW   21 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHH
Confidence            45 48999999999998765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.35  E-value=0.015  Score=50.53  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--+.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999999886444

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.21  E-value=0.016  Score=50.75  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=19.8

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -+.|+|++||||||++|.+--++
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            46899999999999999987554

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.017  Score=48.88  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=17.7

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      ++|+||+||||+||.+.+.--
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999887543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.017  Score=47.87  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=18.5

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      |+|.|++||||||+.+.+.--|
T Consensus         6 I~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5677999999999999887544

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.16  E-value=0.02  Score=48.86  Aligned_cols=23  Identities=30%  Similarity=0.242  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -|||.|+.|+||||+++.+.--.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999886443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.93  E-value=0.038  Score=47.87  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=18.9

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..|||.|+.|+|||++++.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHh
Confidence            359999999999999999875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.013  Score=47.08  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             eEEeccCCCcchhHHHHHHhhhc
Q 019426           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~~   72 (341)
                      .+|+|++|||||||+..+..+..
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            47889999999999999997643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.54  E-value=0.024  Score=45.82  Aligned_cols=20  Identities=25%  Similarity=0.484  Sum_probs=18.0

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      -+|+|+|.+++|||||++.+
T Consensus         6 ~~I~lvG~~~~GKSSLin~l   25 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNL   25 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.32  E-value=0.027  Score=46.10  Aligned_cols=23  Identities=26%  Similarity=0.221  Sum_probs=18.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      +=|.|.|..||||||+++.++-.
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            34567899999999999988643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.04  E-value=0.029  Score=47.23  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=18.9

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..-+||.|+.|+||||+++.+.
T Consensus        45 ~~~lll~Gp~G~GKTtla~~ia   66 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALA   66 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            3459999999999999998774

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.99  E-value=0.03  Score=45.08  Aligned_cols=19  Identities=26%  Similarity=0.585  Sum_probs=17.0

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      .|+|+|.+++|||||++.+
T Consensus         2 ~I~lvG~~nvGKSsLin~l   20 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRL   20 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.92  E-value=0.027  Score=46.14  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHHh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~   69 (341)
                      +.+=|.+-|..||||||++|.++-
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999874

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=91.88  E-value=0.057  Score=43.78  Aligned_cols=69  Identities=12%  Similarity=0.061  Sum_probs=49.4

Q ss_pred             cCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCcee
Q 019426          218 KSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALH  297 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~  297 (341)
                      ..+..+.++|.+|+....+........++++++|+|.++-           .....+.++..+-.    .+       .|
T Consensus        56 ~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g-----------~~~~~~~~~~~~~~----~~-------~p  113 (179)
T d1wb1a4          56 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLILDH----FN-------IP  113 (179)
T ss_dssp             ETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHHHH----TT-------CC
T ss_pred             cCCccccccccccccccccchhhhhhhccccccccccccc-----------cchhhhhhhhhhhh----cC-------Cc
Confidence            4567789999999987777777788899999999998862           12233444444332    13       67


Q ss_pred             EEEEec-cCccC
Q 019426          298 ITAFVA-CEHVS  308 (341)
Q Consensus       298 iilf~n-~d~~~  308 (341)
                      +++++| +|+..
T Consensus       114 ~iiv~NKiD~~~  125 (179)
T d1wb1a4         114 IIVVITKSDNAG  125 (179)
T ss_dssp             BCEEEECTTSSC
T ss_pred             ceeccccccccC
Confidence            888888 99873

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.70  E-value=0.073  Score=44.84  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=19.7

Q ss_pred             cceEEeccCCCcchhHHHHHHhh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      --+||.|+.|+||||++|.+.-.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999987643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.61  E-value=0.18  Score=41.89  Aligned_cols=71  Identities=17%  Similarity=0.220  Sum_probs=49.8

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      .+.+..+.++|..|....-+.-..-...+|++|+|||.++-           -...+.+.+.-+..   +.       ..
T Consensus        62 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G-----------~~~QT~~~~~~a~~---~~-------~~  120 (196)
T d1d2ea3          62 STAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLARQ---IG-------VE  120 (196)
T ss_dssp             ECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHHHH---TT-------CC
T ss_pred             EeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCC-----------CchhHHHHHHHHHH---hc-------CC
Confidence            67788999999999877655555667789999999999862           12334444433322   11       25


Q ss_pred             eEEEEec-cCccC
Q 019426          297 HITAFVA-CEHVS  308 (341)
Q Consensus       297 ~iilf~n-~d~~~  308 (341)
                      |+|+++| +|.+.
T Consensus       121 ~iIv~iNK~D~~~  133 (196)
T d1d2ea3         121 HVVVYVNKADAVQ  133 (196)
T ss_dssp             CEEEEEECGGGCS
T ss_pred             cEEEEEecccccc
Confidence            7889998 99874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.037  Score=44.24  Aligned_cols=20  Identities=25%  Similarity=0.511  Sum_probs=18.0

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      -.|+|+|.+++|||||++.+
T Consensus         6 ~~I~iiG~~nvGKSSLin~L   25 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKL   25 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35899999999999999976

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.60  E-value=0.11  Score=41.54  Aligned_cols=74  Identities=9%  Similarity=0.137  Sum_probs=44.2

Q ss_pred             cCCceeEEEecCCcccc-------ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhc--CccccC
Q 019426          218 KSGEVYRLFDVGGQRNE-------RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK--QPCFEV  288 (341)
Q Consensus       218 ~~~~~~~l~DvgGqr~e-------R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n--~~~f~~  288 (341)
                      ..+..+.+||++|....       ..++......++.++|++|.+...            .++.......+.  .....+
T Consensus        46 ~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~------------~~~~~~~~~~~~~~~~~~~~  113 (180)
T d1udxa2          46 SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEP------------LKTLETLRKEVGAYDPALLR  113 (180)
T ss_dssp             SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCH------------HHHHHHHHHHHHHHCHHHHH
T ss_pred             cCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhccccccc------------ccchhhhhhhhhccccccch
Confidence            34567899999995432       233344567899999999987532            223333222221  122222


Q ss_pred             ccccCCceeEEEEec-cCccCcc
Q 019426          289 FFCATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       289 ~~~~~~~~~iilf~n-~d~~~~~  310 (341)
                             .|+++.+| +|++...
T Consensus       114 -------~p~iiv~NK~D~~~~~  129 (180)
T d1udxa2         114 -------RPSLVALNKVDLLEEE  129 (180)
T ss_dssp             -------SCEEEEEECCTTSCHH
T ss_pred             -------hhhhhhhhhhhhhhHH
Confidence                   57888888 9998443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=91.31  E-value=0.039  Score=44.84  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +.++|.++|..++|||||++++-
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~   26 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLT   26 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHH
Confidence            45689999999999999999864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=91.21  E-value=0.043  Score=46.38  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=19.2

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..-+|+.|+.|+||||+++-+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la   56 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIA   56 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4469999999999999999764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.17  E-value=0.044  Score=43.99  Aligned_cols=77  Identities=8%  Similarity=0.139  Sum_probs=40.6

Q ss_pred             eeEEEecCCcccc-----------cccccc----ccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccc
Q 019426          222 VYRLFDVGGQRNE-----------RRKWIH----LFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF  286 (341)
Q Consensus       222 ~~~l~DvgGqr~e-----------R~kW~~----~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f  286 (341)
                      .+.++|++|-...           +..|.+    ...++++++||+|.+..++.........-....+.+++.+...   
T Consensus        44 ~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~---  120 (184)
T d2cxxa1          44 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL---  120 (184)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT---
T ss_pred             cceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc---
Confidence            4788999984211           122232    3467899999999875432211100001111123333333221   


Q ss_pred             cCccccCCceeEEEEec-cCccCc
Q 019426          287 EVFFCATSALHITAFVA-CEHVSG  309 (341)
Q Consensus       287 ~~~~~~~~~~~iilf~n-~d~~~~  309 (341)
                       +       .|+++.+| +|++..
T Consensus       121 -~-------~p~iiv~NK~D~~~~  136 (184)
T d2cxxa1         121 -D-------IPTIVAVNKLDKIKN  136 (184)
T ss_dssp             -T-------CCEEEEEECGGGCSC
T ss_pred             -C-------CCEEEEEeeeehhhh
Confidence             2       67888888 998843

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.15  E-value=0.04  Score=46.56  Aligned_cols=20  Identities=40%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -++|.|++|+||||+++++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            46788999999999999874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.09  E-value=0.041  Score=49.18  Aligned_cols=21  Identities=24%  Similarity=0.607  Sum_probs=19.0

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      --+||+||+|+|||.++|++.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHh
Confidence            459999999999999999875

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=91.00  E-value=0.066  Score=45.03  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.3

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +-.-|++.|-+||||||+++.+.
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            33459999999999999998874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.98  E-value=0.04  Score=44.46  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      .|.|+|.+++|||||++.+
T Consensus         3 ~VaivG~~nvGKSTLin~L   21 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAM   21 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999876

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.84  E-value=0.035  Score=46.98  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.2

Q ss_pred             ccceEEeccCCCcchhHHHHHH
Q 019426           47 IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        47 ~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...+||.|+.|+||||+++.+-
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la   54 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALL   54 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999999874

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.55  E-value=0.047  Score=44.15  Aligned_cols=79  Identities=8%  Similarity=-0.003  Sum_probs=42.7

Q ss_pred             CCceeEEEecCCccccccc-------cccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccc
Q 019426          219 SGEVYRLFDVGGQRNERRK-------WIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFC  291 (341)
Q Consensus       219 ~~~~~~l~DvgGqr~eR~k-------W~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~  291 (341)
                      .+..+.+||++|....+..       .......++.++++++.+..+...     .............. ....+.+   
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~---  117 (185)
T d1lnza2          47 DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRD-----PYDDYLTINQELSE-YNLRLTE---  117 (185)
T ss_dssp             SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCC-----HHHHHHHHHHHHHH-SCSSTTT---
T ss_pred             CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccch-----hhhhhhhhhhccch-hhhhccC---
Confidence            3456889999996322222       222345678899999887643211     11122222222222 2233333   


Q ss_pred             cCCceeEEEEec-cCccCcc
Q 019426          292 ATSALHITAFVA-CEHVSGM  310 (341)
Q Consensus       292 ~~~~~~iilf~n-~d~~~~~  310 (341)
                          .|+++.+| +|+....
T Consensus       118 ----kp~ivv~NK~Dl~~~~  133 (185)
T d1lnza2         118 ----RPQIIVANKMDMPEAA  133 (185)
T ss_dssp             ----SCBCBEEECTTSTTHH
T ss_pred             ----CcchhhccccchHhHH
Confidence                67888888 9998443

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.053  Score=43.56  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.4

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      =++|.|++|||||||+-|+-.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.46  E-value=0.052  Score=45.98  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=18.6

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -+||.|++|+||||+++.+.-
T Consensus        54 ~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.22  E-value=0.057  Score=45.17  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=18.3

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      .-+++.|+.|+||||+++.+-
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~   54 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALT   54 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHH
Confidence            358999999999999988764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=90.22  E-value=0.057  Score=44.93  Aligned_cols=29  Identities=31%  Similarity=0.156  Sum_probs=20.8

Q ss_pred             eEEeccCCCcchhHHHHHHhhhcCCCCHH
Q 019426           50 LLLLGAGESGKSTIFKQIKLLFQTGFDEA   78 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~~~~~~~~   78 (341)
                      |-|.|..||||||+++.++-..-.-++.+
T Consensus         5 IgITG~igSGKStv~~~l~~~G~~vidaD   33 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTDLGVPLVDAD   33 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHTTTCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCeEEEch
Confidence            56899999999999998875432224433

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.95  E-value=0.061  Score=46.89  Aligned_cols=23  Identities=39%  Similarity=0.622  Sum_probs=20.0

Q ss_pred             eEEeccCCCcchhHHHHHHhhhc
Q 019426           50 LLLLGAGESGKSTIFKQIKLLFQ   72 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~~   72 (341)
                      -+|+|+.||||||+++.+..+..
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            37899999999999999987653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=89.91  E-value=0.061  Score=46.55  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .+||.|+.|+|||+++|.+.-
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            499999999999999999873

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=0.071  Score=47.86  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             cccceEEeccCCCcchhHHHHHHhh
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~~~   70 (341)
                      ..+=|.|-|++||||||+++.++.+
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHH
Confidence            3455778899999999999988754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=0.073  Score=44.37  Aligned_cols=21  Identities=38%  Similarity=0.379  Sum_probs=17.8

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      |.|.|..||||||+++.++-.
T Consensus         6 IgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEECCCcCCHHHHHHHHHHC
Confidence            458999999999999987644

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=89.46  E-value=0.13  Score=46.36  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=18.6

Q ss_pred             cceEEeccCCCcchhHHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+|+.|+.||||||+++-+-
T Consensus       167 ~nili~G~tgSGKTT~l~al~  187 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIM  187 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHG
T ss_pred             CCEEEEeeccccchHHHHHHh
Confidence            468999999999999998764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.44  E-value=0.082  Score=45.19  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.7

Q ss_pred             eEEeccCCCcchhHHHHHHhhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~~   71 (341)
                      ++|-|++.|||||++||+.++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHHH
Confidence            7999999999999999998543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.41  E-value=0.069  Score=44.27  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=17.8

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      =++|.|++|||||||+-|+-
T Consensus        36 ~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47899999999999999874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.18  E-value=0.078  Score=44.23  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=19.4

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +...+||.|+.|+||||+++.+-
T Consensus        34 ~~~~lLl~Gp~G~GKttl~~~la   56 (227)
T d1sxjc2          34 KLPHLLFYGPPGTGKTSTIVALA   56 (227)
T ss_dssp             CCCCEEEECSSSSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChhHHHHHHH
Confidence            33469999999999999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.16  E-value=0.13  Score=44.94  Aligned_cols=16  Identities=31%  Similarity=0.669  Sum_probs=14.6

Q ss_pred             ceEEeccCCCcchhHH
Q 019426           49 KLLLLGAGESGKSTIF   64 (341)
Q Consensus        49 kiLllG~~eSGKST~~   64 (341)
                      -+||.|++||||||++
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            5899999999999986

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=89.12  E-value=0.075  Score=46.25  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=18.9

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .+||.|++|+|||++++.+.-
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            499999999999999998863

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.08  E-value=0.17  Score=46.77  Aligned_cols=25  Identities=20%  Similarity=0.464  Sum_probs=22.1

Q ss_pred             hhcccceEEeccCCCcchhHHHHHH
Q 019426           44 EKHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        44 ~~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+..++|.++|.+++|||||++.+.
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHh
Confidence            4556899999999999999999876

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.02  E-value=0.079  Score=45.44  Aligned_cols=20  Identities=25%  Similarity=0.409  Sum_probs=17.9

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      ...+++|++|.|||||++.+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L  115 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAI  115 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHhh
Confidence            36799999999999999976

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.86  E-value=0.092  Score=45.09  Aligned_cols=21  Identities=38%  Similarity=0.645  Sum_probs=18.9

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      ++|-|++.|||||++||+.++
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHHH
Confidence            688899999999999999854

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.77  E-value=0.085  Score=44.09  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=19.0

Q ss_pred             cccceEEeccCCCcchhHHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      +...+||.|+.|+||||+++-+-
T Consensus        35 ~~~~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          35 NMPHMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCchhhHHHHH
Confidence            33469999999999999988653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.067  Score=44.74  Aligned_cols=21  Identities=33%  Similarity=0.409  Sum_probs=18.7

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .|.+-|.-||||||+++.+.-
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999998874

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=88.65  E-value=0.081  Score=43.44  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=27.8

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ..+.++|+.|+...-+.-......++.+++|||..+
T Consensus        78 ~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~  113 (195)
T d1kk1a3          78 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANE  113 (195)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTS
T ss_pred             eeEeeeccchhhhhhHHhhcccccccccccccchhh
Confidence            468899999986555544555667999999999886

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.48  E-value=0.088  Score=44.12  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=17.9

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      =++|.|++|||||||.-|+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            48999999999999998874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.33  E-value=0.1  Score=42.75  Aligned_cols=19  Identities=21%  Similarity=0.515  Sum_probs=17.0

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      |.+-|.-||||||+++.+.
T Consensus         3 I~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999999876

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.28  E-value=0.23  Score=42.80  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      -.+||.|+.|+|||++++.+.-
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            3599999999999999998864

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=88.20  E-value=0.089  Score=44.78  Aligned_cols=40  Identities=10%  Similarity=0.052  Sum_probs=33.5

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+..+.++|+.|+...-+.-.....-+|++|+|||..+
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~  124 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARY  124 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTT
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEecccc
Confidence            4567789999999998877777777778999999999876

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.65  E-value=0.1  Score=45.32  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      .|||.|+.|+|||++++.+.-
T Consensus        43 giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHH
Confidence            599999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=87.58  E-value=0.35  Score=38.07  Aligned_cols=40  Identities=15%  Similarity=0.309  Sum_probs=28.1

Q ss_pred             ccCCceeEEEecCCcccc---------ccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNE---------RRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~e---------R~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ......+.++|..|....         +..+...+.+++.++++++.++
T Consensus        44 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~   92 (171)
T d1mkya1          44 EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKR   92 (171)
T ss_dssp             EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTT
T ss_pred             cccccccccccccceeeeeccccccccccccccccccCcEEEEeecccc
Confidence            456678999998885322         2334445678999999999775

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.55  E-value=0.14  Score=45.30  Aligned_cols=40  Identities=20%  Similarity=0.139  Sum_probs=25.4

Q ss_pred             hcHHHHHHHHHHHHHhhc-ccceEEeccCCCcchhHHHHHH
Q 019426           29 QTAEIERRIEQETKAEKH-IQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        29 ~s~~Id~~L~~~~~~~~~-~~kiLllG~~eSGKST~~kq~~   68 (341)
                      ...-+|+.+.+-....++ .+=|-|-|+.||||||+.+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_           8 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            344566666655443322 2334467899999999998763

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=87.22  E-value=0.12  Score=42.56  Aligned_cols=19  Identities=32%  Similarity=0.300  Sum_probs=16.4

Q ss_pred             cceEEeccCCCcchhHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQ   66 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq   66 (341)
                      .-+|+.|++|+||||++-.
T Consensus        16 ~gvli~G~sG~GKS~lal~   34 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALD   34 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHH
Confidence            3589999999999999754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.19  E-value=0.25  Score=42.37  Aligned_cols=39  Identities=18%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             cHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHH
Q 019426           30 TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        30 s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      |..|-+-+++-++......-|||.|..|+||+++++-+.
T Consensus         6 S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2           6 SPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHH
Confidence            445555555555555666789999999999999999764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=87.10  E-value=0.15  Score=46.00  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+..+|-|.|++|+|||||+..+-
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            456789999999999999998763

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.13  Score=43.23  Aligned_cols=21  Identities=33%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      -|.+=|.-||||||++++++-
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            367789999999999999974

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=87.02  E-value=0.13  Score=42.52  Aligned_cols=19  Identities=21%  Similarity=0.352  Sum_probs=16.7

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      |.+-|.-||||||+++.+.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5667999999999999876

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.94  E-value=0.12  Score=46.03  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=15.0

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      =|.+-|++||||||+.+.+.-
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999987753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=86.84  E-value=0.13  Score=42.29  Aligned_cols=19  Identities=26%  Similarity=0.319  Sum_probs=16.4

Q ss_pred             cceEEeccCCCcchhHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQ   66 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq   66 (341)
                      .-+|+.|++|+||||++-.
T Consensus        15 ~gvl~~G~sG~GKStlal~   33 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALE   33 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHH
Confidence            3689999999999999754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.75  E-value=0.19  Score=43.12  Aligned_cols=40  Identities=15%  Similarity=0.086  Sum_probs=33.6

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      .+.+.++.++|+.|+...-+.++.-..-+|+.|.|||.++
T Consensus        80 ~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~  119 (239)
T d1f60a3          80 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV  119 (239)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred             ccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCC
Confidence            5667889999999998888888877888899999999774

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=86.52  E-value=0.11  Score=44.83  Aligned_cols=16  Identities=31%  Similarity=0.538  Sum_probs=14.2

Q ss_pred             ceEEeccCCCcchhHH
Q 019426           49 KLLLLGAGESGKSTIF   64 (341)
Q Consensus        49 kiLllG~~eSGKST~~   64 (341)
                      -+||+|++||||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4899999999999874

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=86.32  E-value=1.2  Score=37.28  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.3

Q ss_pred             hcccceEEeccCCCcchhHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~   67 (341)
                      +..++++++|..++||||++.+|
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~L   29 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRL   29 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHH
T ss_pred             CCcceEEEEcCCCCCHHHHHHHH
Confidence            35678999999999999999975

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=86.30  E-value=0.14  Score=42.18  Aligned_cols=20  Identities=30%  Similarity=0.227  Sum_probs=18.0

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      =++|.|++|+|||||+-|+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47889999999999999985

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.26  E-value=0.1  Score=44.87  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=24.8

Q ss_pred             hcccceEEeccCCCcchhHHHHHHhhhcCCCCHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAEL   80 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~~~~~~~~~~~e~   80 (341)
                      +..+.|.++|..++||||+...|- .+.+..++.+.
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll-~~~g~i~~~~~   38 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLI-YKCGGIDKRTI   38 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHH-HHHSCSSHHHH
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHH-HHcCCccHHHH
Confidence            334789999999999999999753 23444554433

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.22  E-value=0.076  Score=45.74  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=17.5

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      ..+++|++|.|||||++.+.
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHC
T ss_pred             eEEEECCCCccHHHHHHhhc
Confidence            57899999999999999763

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.22  E-value=0.14  Score=43.20  Aligned_cols=40  Identities=15%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSd  256 (341)
                      ++++..+.++|+.|+...-.--..-..-+|+.|.|||..+
T Consensus        77 ~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~  116 (224)
T d1jnya3          77 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK  116 (224)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred             ecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEeccc
Confidence            4566788899999987655555555566899999999886

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=85.91  E-value=0.17  Score=47.61  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.0

Q ss_pred             ceEEeccCCCcchhHHHHHHhhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLLF   71 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~~   71 (341)
                      -|||+||.|||||-|+|.+.-+-
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999996443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.16  Score=42.25  Aligned_cols=20  Identities=15%  Similarity=0.165  Sum_probs=18.2

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      =++|.|++|||||||+-|+-
T Consensus        39 ~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999985

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=0.31  Score=37.74  Aligned_cols=20  Identities=25%  Similarity=0.592  Sum_probs=18.3

Q ss_pred             cceEEeccCCCcchhHHHHH
Q 019426           48 QKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~   67 (341)
                      +||+++|.+++|||||++++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l   21 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNAL   21 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            58999999999999999865

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=85.34  E-value=0.17  Score=41.78  Aligned_cols=69  Identities=14%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             ceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEE
Q 019426          221 EVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITA  300 (341)
Q Consensus       221 ~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iil  300 (341)
                      ..+.++|+.|+...-+.=......++.+|+|||..+=         . -...+++.+.-+..   +.       +.|+|+
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~g---------i-~~~~t~e~~~~~~~---~~-------i~~iIV  145 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP---------F-PQPQTREHFVALGI---IG-------VKNLII  145 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSC---------S-SCHHHHHHHHHHHH---TT-------CCCEEE
T ss_pred             EEEEEeccchHHHHHhhhhcceecccccccccccccc---------c-cchhHHHHHHHHHH---cC-------Cceeee
Confidence            4688999999976655555566789999999998761         0 01223333332221   11       257888


Q ss_pred             Eec-cCccCc
Q 019426          301 FVA-CEHVSG  309 (341)
Q Consensus       301 f~n-~d~~~~  309 (341)
                      ++| +|+...
T Consensus       146 ~vNK~Dl~~~  155 (205)
T d2qn6a3         146 VQNKVDVVSK  155 (205)
T ss_dssp             EEECGGGSCH
T ss_pred             ccccCCCccc
Confidence            888 999743

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.32  E-value=0.17  Score=41.99  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.3

Q ss_pred             cccceEEeccCCCcchhHHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq~   67 (341)
                      ..+.|.++|..++|||||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l   23 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAI   23 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHH
Confidence            3468999999999999999876

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=85.31  E-value=0.17  Score=42.30  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=18.6

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      =++|.|++|||||||+.|+-.
T Consensus        28 l~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.31  E-value=0.45  Score=36.71  Aligned_cols=40  Identities=25%  Similarity=0.426  Sum_probs=27.3

Q ss_pred             ccCCceeEEEecCCcccccc---------ccccccCCccEEEEEeeccC
Q 019426          217 KKSGEVYRLFDVGGQRNERR---------KWIHLFEGVSAVIFCAAISE  256 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~---------kW~~~f~~v~~IIFvvslSd  256 (341)
                      ...+..+.++|..|-.....         +-...+.++++||||+|.++
T Consensus        44 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~   92 (160)
T d1xzpa2          44 VIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS   92 (160)
T ss_dssp             EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS
T ss_pred             EeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence            45677899999998532211         11223567899999999986

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.17  E-value=0.14  Score=43.15  Aligned_cols=19  Identities=26%  Similarity=0.160  Sum_probs=15.9

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      +++.|+.|+||||+++.+-
T Consensus        49 l~l~GppGtGKT~l~~~l~   67 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTV   67 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHH
Confidence            4556999999999998764

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.80  E-value=0.35  Score=43.68  Aligned_cols=69  Identities=9%  Similarity=0.124  Sum_probs=53.2

Q ss_pred             ccCCceeEEEecCCccccccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCce
Q 019426          217 KKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSAL  296 (341)
Q Consensus       217 ~~~~~~~~l~DvgGqr~eR~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~  296 (341)
                      ..++..+.++|..|+-..-.-=.....-+|+.|.|||..+           .-...+..+++......           .
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~e-----------Gv~~qT~~~~~~a~~~~-----------~  149 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE-----------GVCVQTETVLRQALGER-----------I  149 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT-----------BSCHHHHHHHHHHHHTT-----------C
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEeccc-----------CcchhHHHHHHHHHHcC-----------C
Confidence            3455678999999987655544455566899999999986           56778888888876643           7


Q ss_pred             eEEEEec-cCcc
Q 019426          297 HITAFVA-CEHV  307 (341)
Q Consensus       297 ~iilf~n-~d~~  307 (341)
                      |+++|+| +|.+
T Consensus       150 p~i~viNKiDr~  161 (341)
T d1n0ua2         150 KPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECHHHH
T ss_pred             CeEEEEECcccc
Confidence            8899998 9987

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=84.69  E-value=0.19  Score=44.71  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             cceEEeccCCCcchhHHHHHHh
Q 019426           48 QKLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~kq~~~   69 (341)
                      --+||.|+.|+||||++|-+.-
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3699999999999999998853

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.64  E-value=0.2  Score=41.99  Aligned_cols=20  Identities=35%  Similarity=0.388  Sum_probs=17.2

Q ss_pred             eEEeccCCCcchhHHHHHHh
Q 019426           50 LLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~   69 (341)
                      |.|.|.-||||||+++.+.-
T Consensus         4 IgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56779999999999998843

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=0.2  Score=41.72  Aligned_cols=19  Identities=32%  Similarity=0.513  Sum_probs=15.5

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      |.+-|.-||||||.++.+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4555999999999888764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.40  E-value=0.28  Score=43.97  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=20.2

Q ss_pred             hcccceEEeccCCCcchhHHHHHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .+..+|-|.|++|+|||||+..+-
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHH
Confidence            456789999999999999988653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.34  E-value=0.2  Score=44.98  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=18.3

Q ss_pred             eEEeccCCCcchhHHHHHHhh
Q 019426           50 LLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~~   70 (341)
                      -+|+|+.||||||++..+..+
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~   48 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFV   48 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999998754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=84.21  E-value=0.5  Score=37.48  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=18.5

Q ss_pred             cccceEEeccCCCcchhHHHH
Q 019426           46 HIQKLLLLGAGESGKSTIFKQ   66 (341)
Q Consensus        46 ~~~kiLllG~~eSGKST~~kq   66 (341)
                      ..+||+++|..++|||||++.
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~   27 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNA   27 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHH
Confidence            347999999999999999864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.70  E-value=0.41  Score=40.95  Aligned_cols=32  Identities=31%  Similarity=0.458  Sum_probs=23.9

Q ss_pred             hcccceEEeccCCCcchhHHHHHHhhh-cCCCCHH
Q 019426           45 KHIQKLLLLGAGESGKSTIFKQIKLLF-QTGFDEA   78 (341)
Q Consensus        45 ~~~~kiLllG~~eSGKST~~kq~~~~~-~~~~~~~   78 (341)
                      +..+-|.++|..++||||++..|  +| .+..+..
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~L--l~~~g~i~~~   54 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNI--LFLTGMVDKR   54 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHH--HHHTTSSCHH
T ss_pred             CCceEEEEEeeCCCCHHHHHHHH--HHHcCCccHH
Confidence            34567999999999999999976  44 3445543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.62  E-value=0.41  Score=39.61  Aligned_cols=20  Identities=15%  Similarity=0.283  Sum_probs=17.9

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      -+|+.|+.|+||||+++.+-
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a   45 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALS   45 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            49999999999999999764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=83.33  E-value=0.24  Score=40.40  Aligned_cols=18  Identities=28%  Similarity=0.292  Sum_probs=15.8

Q ss_pred             cceEEeccCCCcchhHHH
Q 019426           48 QKLLLLGAGESGKSTIFK   65 (341)
Q Consensus        48 ~kiLllG~~eSGKST~~k   65 (341)
                      .-+|+.|.+|+||||++-
T Consensus        16 ~gvli~G~sg~GKS~la~   33 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETAL   33 (169)
T ss_dssp             EEEEEEESTTSSHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHH
Confidence            468999999999999864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=83.29  E-value=0.22  Score=43.61  Aligned_cols=37  Identities=27%  Similarity=0.441  Sum_probs=25.8

Q ss_pred             cHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHH
Q 019426           30 TAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        30 s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      .++|++-+.-=.+  +..--+||+|++|.|||++++.+-
T Consensus        24 d~Ei~~l~~iL~r--~~k~n~lLVG~~GvGKTalv~~la   60 (268)
T d1r6bx2          24 EKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLA   60 (268)
T ss_dssp             HHHHHHHHHHHTS--SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CccCCcEEECCCCCcHHHHHHHHH
Confidence            4566666543322  223468999999999999998875

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=83.24  E-value=0.22  Score=45.47  Aligned_cols=19  Identities=37%  Similarity=0.702  Sum_probs=16.7

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      -++++|++|||||++++.+
T Consensus        52 H~~I~G~tGsGKT~~l~~l   70 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLREL   70 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHH
Confidence            3899999999999998754

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=83.18  E-value=0.24  Score=41.62  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=15.7

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      ++++|+.|+||||.+-.+-
T Consensus        13 i~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6789999999999866554

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.98  E-value=0.25  Score=41.53  Aligned_cols=19  Identities=32%  Similarity=0.574  Sum_probs=17.3

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      .|.++|..++|||||++.+
T Consensus         7 ~IaIiGh~d~GKSTL~~~L   25 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHI   25 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHH
Confidence            4899999999999999876

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.95  E-value=0.24  Score=41.37  Aligned_cols=38  Identities=24%  Similarity=0.422  Sum_probs=25.8

Q ss_pred             hcHHHHHHHHHHHHHhhcccceEEeccCCCcchhHHHHHH
Q 019426           29 QTAEIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        29 ~s~~Id~~L~~~~~~~~~~~kiLllG~~eSGKST~~kq~~   68 (341)
                      |.++|++-+.-=.+  ++.--++|+|.+|.|||+++..+-
T Consensus        27 Rd~Ei~~l~~iL~r--~~k~n~lLvG~pGVGKTalv~~LA   64 (195)
T d1jbka_          27 RDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             CHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc--cCCCCeEEEecCCcccHHHHHHHH
Confidence            34556665533222  233468999999999999998775

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=82.68  E-value=0.25  Score=40.31  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=17.6

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      =++|.|++|+|||||+-|+-
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47888999999999998864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=81.91  E-value=0.27  Score=45.27  Aligned_cols=20  Identities=35%  Similarity=0.325  Sum_probs=17.4

Q ss_pred             ceEEeccCCCcchhHHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~   68 (341)
                      =+|+-|+.||||||.+.-|-
T Consensus       160 liLvtGpTGSGKSTTl~~~l  179 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGL  179 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHh
Confidence            48999999999999988763

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=81.58  E-value=1.4  Score=35.15  Aligned_cols=56  Identities=9%  Similarity=0.243  Sum_probs=34.2

Q ss_pred             ccccccccCCccEEEEEeeccCcccccccCCCccchHHHHHHHHHHhcCccccCccccCCceeEEEEec-cCccCcccc
Q 019426          235 RRKWIHLFEGVSAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEVFFCATSALHITAFVA-CEHVSGMHW  312 (341)
Q Consensus       235 R~kW~~~f~~v~~IIFvvslSdydq~l~Ed~~~nRl~eSl~lF~~i~n~~~f~~~~~~~~~~~iilf~n-~d~~~~~~~  312 (341)
                      ...|.+.+.++++|+||+|.+.--           ..+..++++.+-..    +       .|+++.+| +|++....+
T Consensus        96 ~~~~~~~~~~~~~vi~viD~~~~~-----------~~~~~~~~~~l~~~----~-------~piivv~NK~D~~~~~~~  152 (195)
T d1svia_          96 IETYITTREELKAVVQIVDLRHAP-----------SNDDVQMYEFLKYY----G-------IPVIVIATKADKIPKGKW  152 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCC-----------CHHHHHHHHHHHHT----T-------CCEEEEEECGGGSCGGGH
T ss_pred             Hhhhhccccchhhhhhhhhccccc-----------cccccccccccccc----c-------CcceechhhccccCHHHH
Confidence            345566778899999999987421           12223333333221    2       67888888 999855543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=80.97  E-value=0.34  Score=39.00  Aligned_cols=19  Identities=26%  Similarity=0.391  Sum_probs=16.6

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      =|+|-|.=|||||||+|.+
T Consensus        35 ii~L~G~LGaGKTtfvr~~   53 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGM   53 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEecCCCccHHHHHHHH
Confidence            4788999999999999854

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.74  E-value=0.34  Score=40.71  Aligned_cols=18  Identities=39%  Similarity=0.595  Sum_probs=15.5

Q ss_pred             eEEeccCCCcchhHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~   67 (341)
                      .+|-|--||||||+++.+
T Consensus         6 ~iitGFLGaGKTTll~~l   23 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHI   23 (222)
T ss_dssp             EEEEESSSSSCHHHHHHH
T ss_pred             EEEeeCCCCCHHHHHHHH
Confidence            577888999999998875

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=80.59  E-value=0.35  Score=40.61  Aligned_cols=19  Identities=26%  Similarity=0.546  Sum_probs=15.4

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      -++++|+.|+||||.+-.+
T Consensus         8 vi~lvGptGvGKTTTiaKL   26 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKL   26 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4688999999999985544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=80.40  E-value=0.34  Score=41.18  Aligned_cols=20  Identities=30%  Similarity=0.360  Sum_probs=17.6

Q ss_pred             eEEeccCCCcchhHHHHHHh
Q 019426           50 LLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~~   69 (341)
                      .+|.|++|+|||||+-|+-.
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57899999999999998764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=80.30  E-value=0.34  Score=42.27  Aligned_cols=19  Identities=32%  Similarity=0.569  Sum_probs=17.4

Q ss_pred             ceEEeccCCCcchhHHHHH
Q 019426           49 KLLLLGAGESGKSTIFKQI   67 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~   67 (341)
                      -|.++|..++|||||+.+|
T Consensus         4 Nv~iiGh~~~GKTtL~e~l   22 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEAL   22 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHH
Confidence            3789999999999999987

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=80.17  E-value=0.36  Score=41.22  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=18.2

Q ss_pred             ceEEeccCCCcchhHHHHHHh
Q 019426           49 KLLLLGAGESGKSTIFKQIKL   69 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~   69 (341)
                      =++|.|.+|+|||||+-|+-.
T Consensus        37 l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367888999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=80.14  E-value=0.39  Score=43.66  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.5

Q ss_pred             ceEEeccCCCcchhHHHHHHhh
Q 019426           49 KLLLLGAGESGKSTIFKQIKLL   70 (341)
Q Consensus        49 kiLllG~~eSGKST~~kq~~~~   70 (341)
                      -+|++||.|+|||-++|++.-+
T Consensus        70 niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeeeCCCCccHHHHHHHHHhh
Confidence            4999999999999999998644

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.07  E-value=0.37  Score=40.07  Aligned_cols=19  Identities=26%  Similarity=0.438  Sum_probs=16.7

Q ss_pred             eEEeccCCCcchhHHHHHH
Q 019426           50 LLLLGAGESGKSTIFKQIK   68 (341)
Q Consensus        50 iLllG~~eSGKST~~kq~~   68 (341)
                      |.+=|.-||||||.++.+.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            6788999999999998775