Citrus Sinensis ID: 019445

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA
Secondary Structure (PSIPRED)
ccccccEEEEEEccccHHHHHHHHHHccccEEEEEEcccccccccEEEEcccccccccccccEEEEEcccEEEEccEEEEEEccccccccccccccccEEEEcccccccHHHHHHHHcccccEEEEccccccccEEEEEEccccccccccEEEccccHHcccHHHHHHHcccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEccccccccEEEEEEEEccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHccccccccccEEEEEcEccEEEEccEEEEEEccccHHHccHHHHcccEEEEcccccccHHHHHHHHcccccEEEEccccccccEccccccHHHccccccEEEcccHHHHHHHHHHHHHHHHHcEEEEEEEEEEccccccEccccccccccHHHcEcccccEEEcccHHHHHHHHcHHHcccEEEEEEEccccccEEEEEEEEEcccccHHHHHHHHHHHHHccccccEEEEcccccHHHHccccccEEEEHHHcEEEEccEEEEEEEEcccHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAGDKKIKIGINGFGRIGRLVARVAlqrddvelvavndpfistdyMTYMFKYdsvhgqwkhnelkvkdektllfgekpvavfgfrnpeeipwaktgAEYVVEstgvftdkdKAAAHLKGGAKKVVisapskdapmfvvgvnekeykpeldivsnascttnclaPLAKVIHDKFGIVEGLMTTVHSITatqktvdgpsmkdwrggraasfniipsstgaaKAVGKVlpalngkltgmsfrvptvdvSVVDLTVRLEKEATYEEIKNAIKEESEGKLKgilgyteedvvstdfvgdsrssifdaKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA
Flexible Loop (DISEMBL)
magdkkikigingfgriGRLVARValqrddvelvavndpfISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKvvisapskdaPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSItatqktvdgpsmkDWRGGRAASFNIIPSSTGAAKAVGKVLPALNgkltgmsfrvptvdvsvVDLTVrlekeatyeeiknaikeesegklkGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA
Low Complexity Region (SEG)
MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTdkdkaaahlkggakkVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA
Disordered region (IsUnstruct)
******IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDG**MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIK****GKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM*****
Disordered Region (DISOPRED)
****KKI**GINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT**
Disordered Region (DISEMBL)
MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA
Disordered Region (DISPRO)
****KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
P25858	338	Glyceraldehyde-3-phosphat	yes	no	0.982	0.991	0.925	0.0
P04796	338	Glyceraldehyde-3-phosphat	N/A	no	0.982	0.991	0.910	0.0
P25861	337	Glyceraldehyde-3-phosphat	N/A	no	0.979	0.991	0.925	0.0
P34783	360	Glyceraldehyde-3-phosphat	N/A	no	0.985	0.933	0.904	0.0
Q9FX54	338	Glyceraldehyde-3-phosphat	yes	no	0.982	0.991	0.910	0.0
P26518	341	Glyceraldehyde-3-phosphat	N/A	no	0.991	0.991	0.905	1e-179
P09094	326	Glyceraldehyde-3-phosphat	N/A	no	0.947	0.990	0.934	1e-178
Q7FAH2	337	Glyceraldehyde-3-phosphat	yes	no	0.982	0.994	0.898	1e-177
P34921	338	Glyceraldehyde-3-phosphat	N/A	no	0.976	0.985	0.897	1e-177
Q42671	337	Glyceraldehyde-3-phosphat	N/A	no	0.982	0.994	0.889	1e-177

>sp|P25858|G3PC1_ARATH Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic OS=Arabidopsis thaliana GN=GAPC1 PE=1 SV=2

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/335 (92%), Positives = 325/335 (97%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNE
Sbjct: 3   DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNE 62

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           LK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 63  LKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV
Sbjct: 183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 242

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDAK
Sbjct: 243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAK 302

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           AGIALS  FVKLVSWYDNEWGYSSRV+DLIVHM+K
Sbjct: 303 AGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|P04796|G3PC_SINAL Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/335 (91%), Positives = 324/335 (96%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           DKKIKIGINGFGRIGRLVARV LQR+DVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNE
Sbjct: 3   DKKIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNE 62

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           LKVKDEKTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 63  LKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPSKDAPMFVVGVNE EYK +L+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 123 VVISAPSKDAPMFVVGVNEHEYKSDLNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTV
Sbjct: 183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTV 242

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLTVRLEK ATY+EIK AIKEES+GKLKGILGYTE+DVVSTDFVGD+RSSIFDAK
Sbjct: 243 DVSVVDLTVRLEKAATYDEIKKAIKEESQGKLKGILGYTEDDVVSTDFVGDNRSSIFDAK 302

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           AGIALS NFVKLVSWYDNEWGYS+RV+DLI+HM+K
Sbjct: 303 AGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337

Sinapis alba (taxid: 3728)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P25861|G3PC_ANTMA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1

 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/334 (92%), Positives = 321/334 (96%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG WKH+ELKV
Sbjct: 4   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKV 63

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KDEKTLLFGEKPV VFG RNPEEIP A TGAEY+VESTGVFTDKDKAAAHLKGGAKKV+I
Sbjct: 64  KDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVII 123

Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           SAPSKDAPMFVVGVNEKEYK +L IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHSI
Sbjct: 124 SAPSKDAPMFVVGVNEKEYKSDLHIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSI 183

Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTVDVS
Sbjct: 184 TATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVS 243

Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
           VVDLTVRLEK+ATYE+IK AIKEESEGKLKGILGYTE+DVVSTDFVGDSRSSIFDAKAGI
Sbjct: 244 VVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGI 303

Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           AL+ NFVKLVSWYDNEWGYS+RV+DLIVHMA  Q
Sbjct: 304 ALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASVQ 337

Antirrhinum majus (taxid: 4151)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P34783|G3P_ATRNU Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1

 Score =  634 bits (1634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/336 (90%), Positives = 322/336 (95%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+KIGINGFGRIGRLVARV LQ DD ELVA+NDPFI+TDYMTYMFKYDSVHGQWKH+ELK
Sbjct: 3   KVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKDEKTLLFGE+PV VFG RNPEEIPW +TGA+YVVESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 63  VKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVI 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNE EYK EL+IVSNASCTTNCLAPLAKVI+DKFGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEHEYKSELNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV
Sbjct: 183 ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEKEATYE+IK AIKEESEGK+KGILGYTE+DVVSTDFVGD+RSSIFDAKAG
Sbjct: 243 SVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAG 302

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           I L+ NFVKLVSWYDNEWGYSSRV+DLI HM+KT +
Sbjct: 303 ICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKTTS 338

Atriplex nummularia (taxid: 3553)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9FX54|G3PC2_ARATH Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Arabidopsis thaliana GN=GAPC2 PE=1 SV=1

 Score =  633 bits (1632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/335 (91%), Positives = 324/335 (96%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKH+E
Sbjct: 3   DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHE 62

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           LKVKD+KTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 63  LKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPTV
Sbjct: 183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTV 242

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLTVRLEK ATY+EIK AIKEESEGK+KGILGYTE+DVVSTDFVGD+RSSIFDAK
Sbjct: 243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAK 302

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           AGIALS  FVKLVSWYDNEWGYSSRV+DLIVHM+K
Sbjct: 303 AGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism (By similarity). Binds DNA in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P26518|G3PC_MAGLI Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1

 Score =  629 bits (1622), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 308/340 (90%), Positives = 322/340 (94%), Gaps = 2/340 (0%)

Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWKH+
Sbjct: 2   GGKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHH 61

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           ELKVKD KTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFTDKDKAAAHLKGGAK
Sbjct: 62  ELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAK 121

Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           KV+ISAPSKDAPMFVVGVNE EYK  +DIVSNASCTTNCLAPLAKVI+DKFGIVEGLMTT
Sbjct: 122 KVIISAPSKDAPMFVVGVNEHEYKSNIDIVSNASCTTNCLAPLAKVINDKFGIVEGLMTT 181

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPS KDWRGGRAA FNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPT
Sbjct: 182 VHSITATQKTVDGPSSKDWRGGRAAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPT 241

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
           VDVSVVDLTVRLEK A+YEEIK  IK ESEGKLKGILGYTEEDVVSTDF+GD+RSSIFDA
Sbjct: 242 VDVSVVDLTVRLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDFIGDNRSSIFDA 301

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVID--LIVHMAKTQ 340
           KAGIAL+++FVKLVSWYDNEWGYSSRVID  LIVHMA  Q
Sbjct: 302 KAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIVHMASCQ 341

Magnolia liliiflora (taxid: 3403)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P09094|G3PC_TOBAC Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1

 Score =  623 bits (1607), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 302/323 (93%), Positives = 315/323 (97%)

Query: 15  GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLF 74
           GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH+ELKVKDEKTLLF
Sbjct: 1   GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLF 60

Query: 75  GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP 134
           GEK V VFG RNPEEIPWA+ GA++VVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP
Sbjct: 61  GEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP 120

Query: 135 MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVD 194
           MFVVGVNEKEYKPE DIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS+TATQKTVD
Sbjct: 121 MFVVGVNEKEYKPEYDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSLTATQKTVD 180

Query: 195 GPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRL 254
           GPSMKDWRGGRA SFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDVSVVDLTVRL
Sbjct: 181 GPSMKDWRGGRATSFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRL 240

Query: 255 EKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVK 314
           EKEA+Y++IK AIKEESEGKLKGILG+TE+DVVSTDFVGDSRSSIFDAKAGIALSKNFVK
Sbjct: 241 EKEASYDDIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSRSSIFDAKAGIALSKNFVK 300

Query: 315 LVSWYDNEWGYSSRVIDLIVHMA 337
           LVSWYDNEWGYSSRVIDLI HMA
Sbjct: 301 LVSWYDNEWGYSSRVIDLICHMA 323

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q7FAH2|G3PC2_ORYSJ Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC2 PE=1 SV=1

 Score =  622 bits (1605), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 301/335 (89%), Positives = 320/335 (95%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQ DDVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+E+K
Sbjct: 3   KIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHEVK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKD KTLLFGEK V VFG RNPEEIPW +TGAE+VVESTGVFTDKDKAAAHLKGGAKKVV
Sbjct: 63  VKDSKTLLFGEKEVTVFGCRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVV 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEKEYKP++DIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+
Sbjct: 123 ISAPSKDAPMFVVGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHA 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDV
Sbjct: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEK A+Y++IK AIKEESEGKLKGILGY EED+VSTDF GD+RSSIFDAKAG
Sbjct: 243 SVVDLTVRLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTDFQGDNRSSIFDAKAG 302

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           IAL+ NFVKLVSWYDNEWGYSSRV+DLI HM  TQ
Sbjct: 303 IALNDNFVKLVSWYDNEWGYSSRVVDLIRHMYNTQ 337

Key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Essential for the maintenance of cellular ATP levels and carbohydrate metabolism.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P34921|G3PC_DIACA Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1

 Score =  622 bits (1604), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 299/333 (89%), Positives = 320/333 (96%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IKIGINGFGRIGRLVARV LQR+D ELVAVNDPFI+T+YMTYMFKYDSVHGQWKH+++KV
Sbjct: 4   IKIGINGFGRIGRLVARVILQREDCELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKV 63

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KDEKTLLFGEK V VFG RNPEEIPW  TGA+YVVESTGVFTDKDKAAAHLKGGAKKV+I
Sbjct: 64  KDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVII 123

Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           SAPSKDAPMFVVGVNE EYKPELDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHSI
Sbjct: 124 SAPSKDAPMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSI 183

Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPTVDVS
Sbjct: 184 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVS 243

Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
           VVDLTVR+EK ATYE++K AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDAKAGI
Sbjct: 244 VVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGI 303

Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 339
           AL+ NF+KLVSWYDNEWGYS+RV+DLI H+ KT
Sbjct: 304 ALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336

Dianthus caryophyllus (taxid: 3570)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q42671|G3PC_CRAPL Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1

 Score =  620 bits (1600), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 298/335 (88%), Positives = 320/335 (95%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+KIGINGFGRIGRLVARVAL RDDVELVAVNDPFI+ DYM YMFKYD+VHGQ+KH+ELK
Sbjct: 3   KVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKDEKTLLFG+KPVAVFG RNPEEIPWA+TGAEYVVESTGVFT+K+KAAAHLKGGAKKV+
Sbjct: 63  VKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVI 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEK Y P++D+VSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKTYTPDIDVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTVDV
Sbjct: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTV L KEA+Y+EIK AIKEESEGKLKGILGYTEEDVVS+DFVGDSRSSIFDAKAG
Sbjct: 243 SVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDFVGDSRSSIFDAKAG 302

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           IALSK FVK+V+WYDNEWGYSSRV+DLI HMA  +
Sbjct: 303 IALSKKFVKIVAWYDNEWGYSSRVVDLIRHMAAAK 337

Craterostigma plantagineum (taxid: 4153)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
224110772	341	predicted protein [Populus trichocarpa]	1.0	1.0	0.923	0.0
74419004	341	glyceraldehyde-3-phosphate dehydrogenase	1.0	1.0	0.923	0.0
157042763	340	glyceraldehyde 3-phosphate dehydrogenase	0.988	0.991	0.940	0.0
418731090	337	glyceraldehyde 3-phosphate dehydrogenase	0.982	0.994	0.925	0.0
386870483	337	glyceraldehyde 3-phosphate dehydrogenase	0.973	0.985	0.936	0.0
297828898	338	glyceraldehyde-3-phosphate dehydrogenase	0.982	0.991	0.928	0.0
4539543	337	glyceraldehyde-3-phosphate dehydrogenase	0.982	0.994	0.922	0.0
15229231	338	glyceraldehyde-3-phosphate dehydrogenase	0.982	0.991	0.925	0.0
166706	338	cystolic glyceraldehyde-3-phosphate dehy	0.982	0.991	0.925	0.0
22094840	338	glyceraldehyde 3-phosphate dehydrogenase	0.976	0.985	0.930	0.0

>gi|224110772|ref|XP_002315632.1| predicted protein [Populus trichocarpa] gi|118481113|gb|ABK92510.1| unknown [Populus trichocarpa] gi|118486257|gb|ABK94970.1| unknown [Populus trichocarpa] gi|222864672|gb|EEF01803.1| predicted protein [Populus trichocarpa]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/341 (92%), Positives = 330/341 (96%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           MA DKKIKIGINGFGRIGRLVARVALQRDDVELVA+NDPFI+TDYMTYMFKYD+VHG+WK
Sbjct: 1   MACDKKIKIGINGFGRIGRLVARVALQRDDVELVAINDPFITTDYMTYMFKYDTVHGRWK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H+ELKVKDEKTLLFGEK VAVFG RNPEEIPWA+ GAE+VVESTGVFTDKDKAAAHLKGG
Sbjct: 61  HSELKVKDEKTLLFGEKAVAVFGIRNPEEIPWAQAGAEFVVESTGVFTDKDKAAAHLKGG 120

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFVVGVNEK+Y P+LDIVSNASCTTNCLAPLAKVIHD+FGIVEGLM
Sbjct: 121 AKKVVISAPSKDAPMFVVGVNEKQYTPDLDIVSNASCTTNCLAPLAKVIHDRFGIVEGLM 180

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV
Sbjct: 181 TTVHAITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PTVDVSVVDLTVRLEK+ATYE IK+AIKEESE  LKGILGY EEDVVSTDF+GDSRSSIF
Sbjct: 241 PTVDVSVVDLTVRLEKKATYEAIKSAIKEESENNLKGILGYVEEDVVSTDFIGDSRSSIF 300

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           DAKAGIAL+ NFVKLVSWYDNEWGYSSRVIDLI HMAKTQA
Sbjct: 301 DAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIAHMAKTQA 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|74419004|gb|ABA03227.1| glyceraldehyde-3-phosphate dehydrogenase [Populus maximowiczii x Populus nigra]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/341 (92%), Positives = 329/341 (96%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           MA DKKIKIGINGFGRIGRLVARVALQRDDVELVA+NDPFI+TDYMTYMFKYD+VHG+WK
Sbjct: 1   MACDKKIKIGINGFGRIGRLVARVALQRDDVELVAINDPFITTDYMTYMFKYDTVHGRWK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H ELKVKDEKTLLFGEK VAVFG RNPEEIPWA+ GAE+VVESTGVFTDKDKAAAHLKGG
Sbjct: 61  HGELKVKDEKTLLFGEKAVAVFGIRNPEEIPWAQAGAEFVVESTGVFTDKDKAAAHLKGG 120

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFVVGVNEK+Y P+LDIVSNASCTTNCLAPLAKVIHD+FGIVEGLM
Sbjct: 121 AKKVVISAPSKDAPMFVVGVNEKQYTPDLDIVSNASCTTNCLAPLAKVIHDRFGIVEGLM 180

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV
Sbjct: 181 TTVHAITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PTVDVSVVDLTVRLEK+ATYE IK+AIKEESE  LKGILGY EEDVVSTDF+GDSRSSIF
Sbjct: 241 PTVDVSVVDLTVRLEKKATYEAIKSAIKEESENNLKGILGYVEEDVVSTDFIGDSRSSIF 300

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           DAKAGIAL+ NFVKLVSWYDNEWGYSSRVIDLI HMAKTQA
Sbjct: 301 DAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIAHMAKTQA 341

Source: Populus maximowiczii x Populus nigra

Species: Populus maximowiczii x Populus nigra

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157042763|gb|ABV02033.1| glyceraldehyde 3-phosphate dehydrogenase [Nicotiana langsdorffii x Nicotiana sanderae]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/337 (94%), Positives = 329/337 (97%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           MA DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK
Sbjct: 1   MASDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H+ELKVKDEKTLLFGEK V VFG RNPEEIPWA+ GA++VVESTGVFTDKDKAAAHLKGG
Sbjct: 61  HHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGG 120

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFVVGVNEKEYKPE DIVSNASCTTNCLAPLAKVI+D+FGIVEGLM
Sbjct: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPEYDIVSNASCTTNCLAPLAKVINDRFGIVEGLM 180

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVHS+TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRV
Sbjct: 181 TTVHSLTATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRV 240

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PTVDVSVVDLTVRLEKEA+Y+EIK AIKEESEGKLKGILG+TE+DVVSTDFVGDSRSSIF
Sbjct: 241 PTVDVSVVDLTVRLEKEASYDEIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSRSSIF 300

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLI HMA
Sbjct: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMA 337

Source: Nicotiana langsdorffii x Nicotiana sanderae

Species: Nicotiana langsdorffii x Nicotiana sanderae

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731090|gb|AFX67011.1| glyceraldehyde 3-phosphate dehydrogenase [Solanum tuberosum]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/335 (92%), Positives = 328/335 (97%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+KIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS DYMTYMFKYDSVHGQWKH+ELK
Sbjct: 3   KVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVDYMTYMFKYDSVHGQWKHHELK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKDEKTLLFGEK V VFGFRNPEEIPWA+TGA+Y+VESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 63  VKDEKTLLFGEKAVTVFGFRNPEEIPWAQTGADYIVESTGVFTDKDKAAAHLKGGAKKVI 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEKEYKPEL+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDV
Sbjct: 183 ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEKEATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDAKAG
Sbjct: 243 SVVDLTVRLEKEATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAG 302

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           IALSKNFVKLV+WYDNEWGYS+RV+DLI+HM+  Q
Sbjct: 303 IALSKNFVKLVAWYDNEWGYSTRVVDLIIHMSSVQ 337

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386870483|gb|AFJ42572.1| glyceraldehyde 3-phosphate dehydrogenase [Sesamum indicum]

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/332 (93%), Positives = 324/332 (97%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQRDD++LVAVNDPFISTDYMTYMFKYDSVHG WKHNE+K
Sbjct: 3   KIKIGINGFGRIGRLVARVALQRDDIDLVAVNDPFISTDYMTYMFKYDSVHGHWKHNEVK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           +KDEKTLLFG+KPV VFGFRNPEEIPW + GAE+VVESTGVFTDKDKAAAHLKGGAKKVV
Sbjct: 63  MKDEKTLLFGDKPVKVFGFRNPEEIPWGEAGAEFVVESTGVFTDKDKAAAHLKGGAKKVV 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEKEYKP+L+IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKEYKPDLNIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV
Sbjct: 183 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEKEATYEEIK  IK+ESE  LKGILGYTE+DVVSTDFVGDSRSS+FDAKAG
Sbjct: 243 SVVDLTVRLEKEATYEEIKAVIKQESENNLKGILGYTEDDVVSTDFVGDSRSSVFDAKAG 302

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           IALSKNFVKL+SWYDNEWGYSSRVIDLIVHMA
Sbjct: 303 IALSKNFVKLISWYDNEWGYSSRVIDLIVHMA 334

Source: Sesamum indicum

Species: Sesamum indicum

Genus: Sesamum

Family: Pedaliaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828898|ref|XP_002882331.1| glyceraldehyde-3-phosphate dehydrogenase C subunit [Arabidopsis lyrata subsp. lyrata] gi|297328171|gb|EFH58590.1| glyceraldehyde-3-phosphate dehydrogenase C subunit [Arabidopsis lyrata subsp. lyrata]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/335 (92%), Positives = 325/335 (97%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           DKKIKIGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNE
Sbjct: 3   DKKIKIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNE 62

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           LK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 63  LKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV
Sbjct: 183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 242

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDAK
Sbjct: 243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAK 302

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           AGIALS  FVKLVSWYDNEWGYSSRV+DLIVHM+K
Sbjct: 303 AGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539543|emb|CAB39974.1| glyceraldehyde-3-phosphate dehydrogenase [Nicotiana tabacum]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/335 (92%), Positives = 326/335 (97%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+KIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS +YMTYMFKYDSVHGQWKH+ELK
Sbjct: 3   KVKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELK 62

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKD+KTLLFGEK V VFGFRNPEEIPW +TGA+Y+VESTGVFTDKDKAAAHLKGGAKKV+
Sbjct: 63  VKDDKTLLFGEKAVTVFGFRNPEEIPWGQTGADYIVESTGVFTDKDKAAAHLKGGAKKVI 122

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNEKEYKPEL+IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVHS
Sbjct: 123 ISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHS 182

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTVDV
Sbjct: 183 ITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDV 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEKEATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDAKAG
Sbjct: 243 SVVDLTVRLEKEATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAG 302

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           IALSKNFVKLVSWYDNEWGYS+RV+DLI HMA  Q
Sbjct: 303 IALSKNFVKLVSWYDNEWGYSTRVVDLIKHMASVQ 337

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229231|ref|NP_187062.1| glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Arabidopsis thaliana] gi|20455492|sp|P25858.2|G3PC1_ARATH RecName: Full=Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic gi|6721173|gb|AAF26801.1|AC016829_25 glyceraldehyde-3-phosphate dehydrogenase C subunit (GapC) [Arabidopsis thaliana] gi|15529286|gb|AAK97737.1| AT3g04120/T6K12_26 [Arabidopsis thaliana] gi|16974417|gb|AAL31134.1| AT3g04120/T6K12_26 [Arabidopsis thaliana] gi|22655270|gb|AAM98225.1| unknown protein [Arabidopsis thaliana] gi|110741920|dbj|BAE98901.1| glyceraldehyde-3-phosphate dehydrogenase C subunit [Arabidopsis thaliana] gi|332640518|gb|AEE74039.1| glyceraldehyde-3-phosphate dehydrogenase, cytosolic [Arabidopsis thaliana]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/335 (92%), Positives = 325/335 (97%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNE
Sbjct: 3   DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNE 62

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           LK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 63  LKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV
Sbjct: 183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 242

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDAK
Sbjct: 243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAK 302

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           AGIALS  FVKLVSWYDNEWGYSSRV+DLIVHM+K
Sbjct: 303 AGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166706|gb|AAA32794.1| cystolic glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] gi|166710|gb|AAA32796.1| glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/335 (92%), Positives = 324/335 (96%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNE
Sbjct: 3   DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNE 62

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           LK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFTDKDKAAAHLKGGAKK
Sbjct: 63  LKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKK 122

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVIS PSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct: 123 VVISEPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV
Sbjct: 183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 242

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLTVRLEK ATYEEIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDAK
Sbjct: 243 DVSVVDLTVRLEKAATYEEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAK 302

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           AGIALS  FVKLVSWYDNEWGYSSRV+DLIVHM+K
Sbjct: 303 AGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22094840|gb|AAM92008.1|AF527779_1 glyceraldehyde 3-phosphate dehydrogenase [Solanum tuberosum] gi|81074359|gb|ABB55366.1| glyceraldehyde 3-phosphate dehydrogenase-like [Solanum tuberosum]

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/333 (93%), Positives = 324/333 (97%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH+ELK
Sbjct: 5   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHHELK 64

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           VKDEKTLLFGEK V VFG RNPE+IPW + GA++VVESTGVFTDKDKAAAHLKGGAKKVV
Sbjct: 65  VKDEKTLLFGEKAVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV 124

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFVVGVNE EYKPELDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+
Sbjct: 125 ISAPSKDAPMFVVGVNENEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHA 184

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           +TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPT DV
Sbjct: 185 MTATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTADV 244

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEKEA+YE+IK AIKEESEGKLKGILGYTE+DVVSTDFVGDSRSSIFDAKAG
Sbjct: 245 SVVDLTVRLEKEASYEDIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAG 304

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           IALSKNFVKLVSWYDNEWGYSSRVIDLI HMAK
Sbjct: 305 IALSKNFVKLVSWYDNEWGYSSRVIDLICHMAK 337

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2103085	338	GAPC1 "glyceraldehyde-3-phosph	0.982	0.991	0.880	1.1e-156
TAIR|locus:2010007	338	GAPC2 "glyceraldehyde-3-phosph	0.982	0.991	0.865	1.5e-154
TAIR|locus:2032810	420	GAPCP-2 "glyceraldehyde-3-phos	0.982	0.797	0.726	5.3e-127
TAIR|locus:2206435	422	GAPCP-1 "glyceraldehyde-3-phos	0.982	0.793	0.723	1.1e-126
CGD|CAL0005657	335	TDH3 [Candida albicans (taxid:	0.976	0.994	0.698	2.8e-121
UNIPROTKB|Q5ADM7	335	TDH3 "Glyceraldehyde-3-phospha	0.976	0.994	0.698	2.8e-121
ASPGD|ASPL0000009927	336	gpdA [Emericella nidulans (tax	0.973	0.988	0.661	7.9e-117
UNIPROTKB|Q5R2J2	333	GAPDH "Glyceraldehyde-3-phosph	0.973	0.996	0.664	9.1e-116
SGD|S000003769	332	TDH2 "Glyceraldehyde-3-phospha	0.967	0.993	0.668	9.1e-116
UNIPROTKB|G4NCH2	336	MGG_01084 "Glyceraldehyde-3-ph	0.967	0.982	0.671	1.2e-115

TAIR|locus:2103085 GAPC1 "glyceraldehyde-3-phosphate dehydrogenase C subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
 Identities = 295/335 (88%), Positives = 310/335 (92%)

Query:     4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
             DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNE
Sbjct:     3 DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNE 62

Query:    64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
             LK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFT               
Sbjct:    63 LKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKK 122

Query:   124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
             VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct:   123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query:   184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
             HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV
Sbjct:   183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 242

Query:   244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
             DVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDAK
Sbjct:   243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAK 302

Query:   304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
             AGIALS  FVKLVSWYDNEWGYSSRV+DLIVHM+K
Sbjct:   303 AGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS;RCA;IDA;TAS

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IEP;IDA

GO:0005740 "mitochondrial envelope" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006094 "gluconeogenesis" evidence=RCA;TAS

GO:0042542 "response to hydrogen peroxide" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0008886 "glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity" evidence=IDA

GO:0010154 "fruit development" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=TAS

GO:0009408 "response to heat" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP

TAIR|locus:2010007 GAPC2 "glyceraldehyde-3-phosphate dehydrogenase C2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1507 (535.5 bits), Expect = 1.5e-154, P = 1.5e-154
 Identities = 290/335 (86%), Positives = 309/335 (92%)

Query:     4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
             DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKH+E
Sbjct:     3 DKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHE 62

Query:    64 LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
             LKVKD+KTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFT               
Sbjct:    63 LKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKK 122

Query:   124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
             VVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTV
Sbjct:   123 VVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTV 182

Query:   184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
             HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPTV
Sbjct:   183 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTV 242

Query:   244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
             DVSVVDLTVRLEK ATY+EIK AIKEESEGK+KGILGYTE+DVVSTDFVGD+RSSIFDAK
Sbjct:   243 DVSVVDLTVRLEKAATYDEIKKAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAK 302

Query:   304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
             AGIALS  FVKLVSWYDNEWGYSSRV+DLIVHM+K
Sbjct:   303 AGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

GO:0005737 "cytoplasm" evidence=ISM

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS;RCA;TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0006094 "gluconeogenesis" evidence=RCA;TAS

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0051049 "regulation of transport" evidence=RCA

TAIR|locus:2032810 GAPCP-2 "glyceraldehyde-3-phosphate dehydrogenase of plastid 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 244/336 (72%), Positives = 272/336 (80%)

Query:     6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             K K+GINGFGRIGRLV R+A  RDD+E+VAVNDPFI   YM YMFKYDS HG +K   + 
Sbjct:    84 KTKVGINGFGRIGRLVLRIATFRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNYK-GTIN 142

Query:    66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
             V D+ TL    K V V   R+P EIPWA  GAEYVVES+GVFT               V+
Sbjct:   143 VIDDSTLEINGKQVKVVSKRDPAEIPWADLGAEYVVESSGVFTTVGQASSHLKGGAKKVI 202

Query:   126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
             ISAPS DAPMFVVGVNEK Y P +DIVSNASCTTNCLAPLAKV+H++FGI+EGLMTTVH+
Sbjct:   203 ISAPSADAPMFVVGVNEKTYLPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 262

Query:   186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
              TATQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct:   263 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 322

Query:   246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
             SVVDLT RLEK+A+YE++K AIK  SEG L+GILGYTEEDVVS DF+GDSRSSIFDA AG
Sbjct:   323 SVVDLTCRLEKDASYEDVKAAIKFASEGPLRGILGYTEEDVVSNDFLGDSRSSIFDANAG 382

Query:   306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
             I LSK+F+KLVSWYDNEWGYS+RV+DLI HMA   A
Sbjct:   383 IGLSKSFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 418

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009536 "plastid" evidence=ISS;IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0080144 "amino acid homeostasis" evidence=IMP

TAIR|locus:2206435 GAPCP-1 "glyceraldehyde-3-phosphate dehydrogenase of plastid 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 243/336 (72%), Positives = 270/336 (80%)

Query:     6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             K K+GINGFGRIGRLV R+A  RDD+E+VAVNDPFI   YM YM KYDS HG +K   + 
Sbjct:    86 KTKVGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMLKYDSTHGNFK-GSIN 144

Query:    66 VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
             V D+ TL    K V V   R+P EIPWA  GA+YVVES+GVFT               V+
Sbjct:   145 VIDDSTLEINGKKVNVVSKRDPSEIPWADLGADYVVESSGVFTTLSKAASHLKGGAKKVI 204

Query:   126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
             ISAPS DAPMFVVGVNE  Y+P +DIVSNASCTTNCLAPLAKV+H++FGI+EGLMTTVH+
Sbjct:   205 ISAPSADAPMFVVGVNEHTYQPNMDIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTVHA 264

Query:   186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
              TATQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct:   265 TTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTSNV 324

Query:   246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
             SVVDLT RLEK A+YE++K AIK  SEG LKGILGYT+EDVVS DFVGDSRSSIFDA AG
Sbjct:   325 SVVDLTCRLEKGASYEDVKAAIKHASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDANAG 384

Query:   306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
             I LSK+FVKLVSWYDNEWGYS+RV+DLI HMA   A
Sbjct:   385 IGLSKSFVKLVSWYDNEWGYSNRVLDLIEHMALVAA 420

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009536 "plastid" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IMP

GO:0005975 "carbohydrate metabolic process" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

GO:0080144 "amino acid homeostasis" evidence=IMP

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0048658 "tapetal layer development" evidence=IMP

CGD|CAL0005657 TDH3 [Candida albicans (taxid:5476)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 234/335 (69%), Positives = 268/335 (80%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             IKIGINGFGRIGRLV RVAL R D+E+VAVNDPFI+ DY  YMFKYDS HG++K  E+  
Sbjct:     3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYK-GEVTA 61

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
               +  ++ G K + VF  R+P  IPW K+G +YV+ESTGVFT               V+I
Sbjct:    62 SGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKLEGAQKHIDAGAKKVII 120

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             +APS DAPMFVVGVNE +Y P+L I+SNASCTTNCLAPLAKV++D FGI EGLMTTVHSI
Sbjct:   121 TAPSADAPMFVVGVNEDKYTPDLKIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSI 180

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKV+P LNGKLTGMS RVPT DVS
Sbjct:   181 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVPTTDVS 240

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
             VVDLTVRL+K A+YEEI  AIK+ SEG LKG+LGYTE+ VVSTDF+G S SSIFD KAGI
Sbjct:   241 VVDLTVRLKKAASYEEIAQAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGI 300

Query:   307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
              LS  FVKL+SWYDNE+GYS+RV+DL+ H+AK  A
Sbjct:   301 LLSPTFVKLISWYDNEYGYSTRVVDLLEHVAKASA 335

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0030445 "yeast-form cell wall" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0006096 "glycolysis" evidence=TAS

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051701 "interaction with host" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0043236 "laminin binding" evidence=IMP;IDA

GO:0050840 "extracellular matrix binding" evidence=IMP;IDA

GO:0044406 "adhesion to host" evidence=IMP

GO:0007160 "cell-matrix adhesion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0001968 "fibronectin binding" evidence=IDA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|Q5ADM7 TDH3 "Glyceraldehyde-3-phosphate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 1193 (425.0 bits), Expect = 2.8e-121, P = 2.8e-121
 Identities = 234/335 (69%), Positives = 268/335 (80%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             IKIGINGFGRIGRLV RVAL R D+E+VAVNDPFI+ DY  YMFKYDS HG++K  E+  
Sbjct:     3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHGRYK-GEVTA 61

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
               +  ++ G K + VF  R+P  IPW K+G +YV+ESTGVFT               V+I
Sbjct:    62 SGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKLEGAQKHIDAGAKKVII 120

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             +APS DAPMFVVGVNE +Y P+L I+SNASCTTNCLAPLAKV++D FGI EGLMTTVHSI
Sbjct:   121 TAPSADAPMFVVGVNEDKYTPDLKIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSI 180

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKV+P LNGKLTGMS RVPT DVS
Sbjct:   181 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVPTTDVS 240

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
             VVDLTVRL+K A+YEEI  AIK+ SEG LKG+LGYTE+ VVSTDF+G S SSIFD KAGI
Sbjct:   241 VVDLTVRLKKAASYEEIAQAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGI 300

Query:   307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
              LS  FVKL+SWYDNE+GYS+RV+DL+ H+AK  A
Sbjct:   301 LLSPTFVKLISWYDNEYGYSTRVVDLLEHVAKASA 335

GO:0001968 "fibronectin binding" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006096 "glycolysis" evidence=TAS

GO:0007160 "cell-matrix adhesion" evidence=IDA

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0030445 "yeast-form cell wall" evidence=IDA

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0043236 "laminin binding" evidence=IDA

GO:0044406 "adhesion to host" evidence=IMP

GO:0044416 "induction by symbiont of host defense response" evidence=IDA

GO:0050840 "extracellular matrix binding" evidence=IDA

GO:0051701 "interaction with host" evidence=IPI

ASPGD|ASPL0000009927 gpdA [Emericella nidulans (taxid:162425)]

 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 221/334 (66%), Positives = 265/334 (79%)

Query:     8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
             K+GINGFGRIGR+V R A++   V++VAVNDPFI T Y  YM KYDS HGQ+K   ++  
Sbjct:     4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFK-GTIETY 62

Query:    68 DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
             DE  ++ G+K +     R+P  IPW + GAEY+VESTGVFT               VVIS
Sbjct:    63 DEGLIVNGKK-IRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVIS 121

Query:   128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
             APS DAPMFV+GVN + YK ++ ++SNASCTTNCLAPLAKVI+D FGI+EGLMTTVHS T
Sbjct:   122 APSADAPMFVMGVNNETYKKDIQVLSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHSYT 181

Query:   188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
             ATQK VDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P+LNGKLTGM+ RVPT +VSV
Sbjct:   182 ATQKVVDGPSAKDWRGGRTAATNIIPSSTGAAKAVGKVIPSLNGKLTGMAMRVPTSNVSV 241

Query:   248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
             VDLTVR EK  TY++IK+A+K+ SE +LKGILGYTE+D+VSTD  GD+RSSIFDAKAGIA
Sbjct:   242 VDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIA 301

Query:   308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
             L+ NF+KLVSWYDNEWGYS RV+DLI +++K  A
Sbjct:   302 LNSNFIKLVSWYDNEWGYSRRVVDLITYISKVDA 335

GO:0005622 "intracellular" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISA;RCA;IMP

GO:0006096 "glycolysis" evidence=ISA;RCA

GO:0006094 "gluconeogenesis" evidence=ISA;RCA

GO:0071470 "cellular response to osmotic stress" evidence=IEP

GO:0035690 "cellular response to drug" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0009277 "fungal-type cell wall" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q5R2J2 GAPDH "Glyceraldehyde-3-phosphate dehydrogenase" [Pelodiscus sinensis (taxid:13735)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 222/334 (66%), Positives = 263/334 (78%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             +KIG+NGFGRIGRLV R A   D V++VA+NDPFI  +YM YMFKYDS HG++ H  +K 
Sbjct:     2 VKIGVNGFGRIGRLVTRAAFTCDKVQIVAINDPFIDLNYMVYMFKYDSTHGRF-HGTVKA 60

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
             ++ K ++ G+  + +F  R+P  I W   GAEYVVESTGVFT               VVI
Sbjct:    61 ENGKLVINGQA-ITIFQERDPANIKWGDAGAEYVVESTGVFTTTEKASAHLKGGAKRVVI 119

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             SAPS DAPMFV+GVN ++Y   L +VSNASCTTNCLAPLAKVIHD +G+VEGLMTTVH+I
Sbjct:   120 SAPSADAPMFVMGVNHEKYDNSLKVVSNASCTTNCLAPLAKVIHDNYGMVEGLMTTVHAI 179

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +VS
Sbjct:   180 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 239

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
             VVDLT RL+K A Y++IK  +K  SEG LKGILGYTE+ VVS+DF GDSRSSIFDA AGI
Sbjct:   240 VVDLTCRLQKPAKYDDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDAAAGI 299

Query:   307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
             AL+ NFVKLVSWYDNE+GYS+RV+DL+VHMA  +
Sbjct:   300 ALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333

GO:0000226 "microtubule cytoskeleton organization" evidence=ISS

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISS

GO:0035605 "peptidyl-cysteine S-nitrosylase activity" evidence=ISS

GO:0035606 "peptidyl-cysteine S-trans-nitrosylation" evidence=ISS

GO:0050821 "protein stabilization" evidence=ISS

GO:0051402 "neuron apoptotic process" evidence=ISS

SGD|S000003769 TDH2 "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 222/332 (66%), Positives = 262/332 (78%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             +++ INGFGRIGRLV R+ALQR +VE+VA+NDPFIS DY  YMFKYDS HG++   E+  
Sbjct:     2 VRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHGRYA-GEVSH 60

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
              D+  ++ G K +A F  R+P  +PWA    +  ++STGVF                VVI
Sbjct:    61 DDKHIIVDGHK-IATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             +APS  APMFV+GVNE++Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct:   120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSM 179

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct:   180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
             VVDLTV+L KE TY+EIK  +K  +EGKLKG+LGYTE+ VVS+DF+GDS SSIFDA AGI
Sbjct:   240 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGI 299

Query:   307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
              LS  FVKLVSWYDNE+GYS+RV+DL+ H+AK
Sbjct:   300 QLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331

GO:0006096 "glycolysis" evidence=IEA;IEP

GO:0006094 "gluconeogenesis" evidence=IEP

GO:0050661 "NADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0004365 "glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity" evidence=IEA;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|G4NCH2 MGG_01084 "Glyceraldehyde-3-phosphate dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
 Identities = 223/332 (67%), Positives = 263/332 (79%)

Query:     7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             +K GINGFGRIGR+V R A++  D E+VAVNDPFI   Y  YM +YDS HG++K   ++V
Sbjct:     2 VKCGINGFGRIGRIVFRNAIEHPDCEIVAVNDPFIEPKYAKYMLEYDSTHGRFK-GTVEV 60

Query:    67 KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                  ++ G+K V  +  R+P  IPW++TGAEYVVESTGVFT               V+I
Sbjct:    61 SGSDLVVNGKK-VKFYTERDPANIPWSETGAEYVVESTGVFTTTDKASAHLKGGAKKVII 119

Query:   127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
             SAPS DAPM+V+GVNEK Y     ++SNASCTTNCLAPLAKVI+DKFGIVEGLMTTVHS 
Sbjct:   120 SAPSADAPMYVMGVNEKSYDGSASVISNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSY 179

Query:   187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
             TATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+PALNGKLTGMS RVPT +VS
Sbjct:   180 TATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPALNGKLTGMSMRVPTANVS 239

Query:   247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
             VVDLT RLEK A+YEEIK AIKE ++G LKGIL YTE+DVVS+D +G++ SSIFDA+AGI
Sbjct:   240 VVDLTCRLEKGASYEEIKAAIKEAADGPLKGILEYTEDDVVSSDMIGNNASSIFDAQAGI 299

Query:   307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
             AL+  FVKLVSWYDNEWGYS RVIDL+ +++K
Sbjct:   300 ALNDKFVKLVSWYDNEWGYSRRVIDLVTYISK 331

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P35143	G3P_COLGL	1, ., 2, ., 1, ., 1, 2	0.7014	0.9765	0.9852	N/A	no
P34923	G3PC_PHYPA	1, ., 2, ., 1, ., 1, 2	0.8047	0.9882	0.9853	N/A	no
Q7FAH2	G3PC2_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.8985	0.9824	0.9940	yes	no
Q42671	G3PC_CRAPL	1, ., 2, ., 1, ., 1, 2	0.8895	0.9824	0.9940	N/A	no
P08477	G3PC2_HORVU	1, ., 2, ., 1, ., 1, 2	0.8688	0.8944	1.0	N/A	no
P0CN74	G3P_CRYNJ	1, ., 2, ., 1, ., 1, 2	0.7261	0.9765	0.9823	yes	no
P0CN75	G3P_CRYNB	1, ., 2, ., 1, ., 1, 2	0.7261	0.9765	0.9823	N/A	no
P29497	G3P_COCHE	1, ., 2, ., 1, ., 1, 2	0.7108	0.9677	0.9792	N/A	no
P04796	G3PC_SINAL	1, ., 2, ., 1, ., 1, 2	0.9104	0.9824	0.9911	N/A	no
A2YQT7	G3PC_ORYSI	1, ., 2, ., 1, ., 1, 2	0.8686	0.9824	0.9940	N/A	no
P53430	G3P_MONPU	1, ., 2, ., 1, ., 1, 2	0.7035	0.9736	0.9851	N/A	no
P17730	G3P2_TRIKO	1, ., 2, ., 1, ., 1, 2	0.7014	0.9765	0.9852	N/A	no
P09317	G3P_USTMA	1, ., 2, ., 1, ., 1, 2	0.6966	0.9706	0.9821	N/A	no
Q12552	G3P_ASPNG	1, ., 2, ., 1, ., 1, 2	0.6946	0.9736	0.9880	yes	no
Q00640	G3P_ERYGR	1, ., 2, ., 1, ., 1, 2	0.6978	0.9648	0.9733	N/A	no
P26518	G3PC_MAGLI	1, ., 2, ., 1, ., 1, 2	0.9058	0.9912	0.9912	N/A	no
P26519	G3PC_PETCR	1, ., 2, ., 1, ., 1, 2	0.8825	0.9736	0.9880	N/A	no
P26517	G3PC1_HORVU	1, ., 2, ., 1, ., 1, 2	0.8626	0.9824	0.9940	N/A	no
Q43247	G3PC3_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8865	0.9824	0.9940	N/A	no
P34783	G3P_ATRNU	1, ., 2, ., 1, ., 1, 2	0.9047	0.9853	0.9333	N/A	no
Q92263	G3P_PICPA	1, ., 2, ., 1, ., 1, 2	0.7048	0.9677	0.9909	yes	no
Q8X1X3	G3P_PARBA	1, ., 2, ., 1, ., 1, 2	0.6925	0.9794	0.9881	N/A	no
P34924	G3PC_PINSY	1, ., 2, ., 1, ., 1, 2	0.8676	0.9970	1.0	N/A	no
P34922	G3PC_PEA	1, ., 2, ., 1, ., 1, 2	0.8948	0.9765	0.9852	N/A	no
Q9FX54	G3PC2_ARATH	1, ., 2, ., 1, ., 1, 2	0.9104	0.9824	0.9911	yes	no
P34921	G3PC_DIACA	1, ., 2, ., 1, ., 1, 2	0.8978	0.9765	0.9852	N/A	no
Q9UR38	G3P_LENED	1, ., 2, ., 1, ., 1, 2	0.7018	0.9677	0.9792	N/A	no
Q5R2J2	G3P_PELSI	2, ., 6, ., 9, 9, ., -	0.6946	0.9736	0.9969	N/A	no
Q8NK47	G3P_RHIMI	1, ., 2, ., 1, ., 1, 2	0.7138	0.9648	0.9791	N/A	no
Q0J8A4	G3PC1_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.8686	0.9824	0.9940	no	no
P25861	G3PC_ANTMA	1, ., 2, ., 1, ., 1, 2	0.9251	0.9794	0.9910	N/A	no
P09094	G3PC_TOBAC	1, ., 2, ., 1, ., 1, 2	0.9349	0.9472	0.9907	N/A	no
Q8TFJ2	G3P_OMPOL	1, ., 2, ., 1, ., 1, 2	0.7259	0.9677	0.9792	N/A	no
Q09054	G3PC2_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8626	0.9824	0.9940	N/A	no
Q92211	G3P_CANAW	1, ., 2, ., 1, ., 1, 2	0.7164	0.9765	0.9940	N/A	no
Q6CCU7	G3P_YARLI	1, ., 2, ., 1, ., 1, 2	0.7261	0.9765	0.9852	yes	no
P56649	G3P_PANVR	1, ., 2, ., 1, ., 1, 2	0.7035	0.9706	0.9939	N/A	no
Q39769	G3PC_GINBI	1, ., 2, ., 1, ., 1, 2	0.8849	0.9941	0.9970	N/A	no
Q6K5G8	G3PC3_ORYSJ	1, ., 2, ., 1, ., 1, 2	0.8865	0.9824	0.9940	no	no
Q41595	G3PC_TAXBA	1, ., 2, ., 1, ., 1, 2	0.8849	0.9941	0.9970	N/A	no
P26521	G3PC_RANAC	1, ., 2, ., 1, ., 1, 2	0.8895	0.9824	0.9911	N/A	no
P26520	G3PC_PETHY	1, ., 2, ., 1, ., 1, 2	0.8925	0.9824	0.9940	N/A	no
P28844	G3P_COCLU	1, ., 2, ., 1, ., 1, 2	0.7078	0.9677	0.9792	N/A	no
P20445	G3P_EMENI	1, ., 2, ., 1, ., 1, 2	0.6946	0.9736	0.9880	yes	no
Q6BMK0	G3P_DEBHA	1, ., 2, ., 1, ., 1, 2	0.7289	0.9677	0.9850	yes	no
P17878	G3PC_MESCR	1, ., 2, ., 1, ., 1, 2	0.8686	0.9824	0.9940	N/A	no
P00357	G3P_HOMAM	1, ., 2, ., 1, ., 1, 2	0.7065	0.9706	0.9939	N/A	no
Q9P8C0	G3P_PHANO	1, ., 2, ., 1, ., 1, 2	0.7108	0.9677	0.9792	N/A	no
P08735	G3PC1_MAIZE	1, ., 2, ., 1, ., 1, 2	0.8597	0.9824	0.9940	N/A	no
P25858	G3PC1_ARATH	1, ., 2, ., 1, ., 1, 2	0.9253	0.9824	0.9911	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.2.1.12	0.993
4th Layer	1.2.1.59	LOW CONFIDENCE prediction!
3rd Layer	1.2.1	0.998

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
PLN02358	338	PLN02358, PLN02358, glyceraldehyde-3-phosphate deh	0.0
PLN02272	421	PLN02272, PLN02272, glyceraldehyde-3-phosphate deh	0.0
PTZ00023	337	PTZ00023, PTZ00023, glyceraldehyde-3-phosphate deh	0.0
COG0057	335	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrog	1e-178
TIGR01534	326	TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate deh	1e-174
PRK15425	331	PRK15425, gapA, glyceraldehyde-3-phosphate dehydro	1e-146
PTZ00434	361	PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-pho	1e-138
PRK07729	343	PRK07729, PRK07729, glyceraldehyde-3-phosphate deh	1e-130
PRK07403	337	PRK07403, PRK07403, glyceraldehyde-3-phosphate deh	1e-114
PLN03096	395	PLN03096, PLN03096, glyceraldehyde-3-phosphate deh	1e-110
PLN02237	442	PLN02237, PLN02237, glyceraldehyde-3-phosphate deh	1e-110
PRK08955	334	PRK08955, PRK08955, glyceraldehyde-3-phosphate deh	1e-103
pfam02800	157	pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate deh	1e-94
PRK13535	336	PRK13535, PRK13535, erythrose 4-phosphate dehydrog	6e-91
PRK08289	477	PRK08289, PRK08289, glyceraldehyde-3-phosphate deh	1e-85
TIGR01532	325	TIGR01532, E4PD_g-proteo, erythrose-4-phosphate de	2e-83
pfam00044	148	pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate deh	3e-72
smart00846	149	smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate de	1e-70
PTZ00353	342	PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-ph	4e-61
COG0136	334	COG0136, Asd, Aspartate-semialdehyde dehydrogenase	2e-08
TIGR01296	338	TIGR01296, asd_B, aspartate-semialdehyde dehydroge	3e-05
PRK04207	341	PRK04207, PRK04207, glyceraldehyde-3-phosphate deh	2e-04
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	3e-04
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	3e-04
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	5e-04

>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase

 Score =  615 bits (1588), Expect = 0.0
 Identities = 306/336 (91%), Positives = 324/336 (96%)

Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
            DKKI+IGINGFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKH+
Sbjct: 2   ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHH 61

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           ELKVKD+KTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFTDKDKAAAHLKGGAK
Sbjct: 62  ELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAK 121

Query: 123 KVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           KVVISAPSKDAPMFVVGVNE EYK +LDIVSNASCTTNCLAPLAKVI+D+FGIVEGLMTT
Sbjct: 122 KVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTT 181

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGMSFRVPT
Sbjct: 182 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPT 241

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
           VDVSVVDLTVRLEK ATY+EIK AIKEESEGKLKGILGYTE+DVVSTDFVGD+RSSIFDA
Sbjct: 242 VDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDA 301

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           KAGIALS  FVKLVSWYDNEWGYSSRV+DLIVHM+K
Sbjct: 302 KAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337

Length = 338

>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase

 Score =  607 bits (1567), Expect = 0.0
 Identities = 256/338 (75%), Positives = 284/338 (84%), Gaps = 1/338 (0%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
             K KIGINGFGRIGRLV R+A  RDD+E+VAVNDPFI   YM YMFKYDS HG +K   
Sbjct: 83  SGKTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GT 141

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           + V D+ TL    K + V   R+P EIPW   GAEYVVES+GVFT  +KA+AHLKGGAKK
Sbjct: 142 INVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKK 201

Query: 124 VVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           VVISAPS DAPMFVVGVNEK YKP ++IVSNASCTTNCLAPLAKV+H++FGI+EGLMTTV
Sbjct: 202 VVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLAKVVHEEFGILEGLMTTV 261

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           H+ TATQKTVDGPSMKDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT 
Sbjct: 262 HATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTP 321

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           +VSVVDLT RLEK A+YE++K AIK  SEG LKGILGYT+EDVVS DFVGDSRSSIFDAK
Sbjct: 322 NVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAK 381

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           AGI LS +F+KLVSWYDNEWGYS+RV+DLI HMA   A
Sbjct: 382 AGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAA 419

Length = 421

>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score =  507 bits (1307), Expect = 0.0
 Identities = 223/337 (66%), Positives = 265/337 (78%), Gaps = 5/337 (1%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGRLV R AL+R+DVE+VA+NDPF++ DYM Y+ KYDSVHG     E+ V
Sbjct: 3   VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPA-EVSV 61

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D   L+ G K V VF  ++P  IPW K G + V ESTGVF  K+KA AHLKGGAKKV++
Sbjct: 62  TDG-FLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP KD  P++V+GVN  +Y     IVSNASCTTNCLAPLAKV++DKFGIVEGLMTTVH+
Sbjct: 121 SAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHA 180

Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
            TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+P LNGKLTGM+FRVP  
Sbjct: 181 STANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVP 240

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLT +L K A YEEI  A+K+ +EG LKGILGYT+++VVS+DFV D RSSIFD K
Sbjct: 241 DVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVK 300

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           AGIAL+  FVKLVSWYDNEWGYS+R++DL  ++ +  
Sbjct: 301 AGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQKY 337

Length = 337

>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

 Score =  495 bits (1278), Expect = e-178
 Identities = 205/336 (61%), Positives = 244/336 (72%), Gaps = 7/336 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
            IK+ INGFGRIGRLVAR AL+RD D+E+VA+ND     DY+ ++ KYDSVHG++   E+
Sbjct: 1   MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFDG-EV 58

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL-KGGAKK 123
           +V  +  L+   K + V   R+P  +PWA  G + VVE TG FT ++KA  HL  GGAKK
Sbjct: 59  EV-KDDALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKK 117

Query: 124 VVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+ISAP KD     V GVN   Y     IVSNASCTTNCLAP+AKV++D FGI +GLMTT
Sbjct: 118 VLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAFGIEKGLMTT 177

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VH+ T  QK VDGP  KD R  RAA+ NIIP+STGAAKAVG VLP L GKLTGM+ RVPT
Sbjct: 178 VHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT 236

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VSVVDLTV LEKE T EEI  A+K  SE  LKGILGYTE+ +VS+DF GD  SSIFDA
Sbjct: 237 PNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDA 296

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
            A I L  N VKLV+WYDNEWGYS+RV+DL+  +AK
Sbjct: 297 SATIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAK 332

Length = 335

>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type I

 Score =  487 bits (1255), Expect = e-174
 Identities = 189/329 (57%), Positives = 242/329 (73%), Gaps = 8/329 (2%)

Query: 8   KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+GINGFGRIGRLV R  L++   D+E+VA+ND     +Y+ Y+ KYDSVHG+++  E+ 
Sbjct: 1   KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDL-TDLEYLAYLLKYDSVHGRFEG-EVT 58

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             ++  ++ G++ ++VF  R+P ++PW   G + V+E TG F DK+K   HL+ GAKKV+
Sbjct: 59  ADEDGLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVL 118

Query: 126 ISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           ISAPSK D    V GVN  EY P   IVSNASCTTNCLAPLAKV+ + FGIV GLMTTVH
Sbjct: 119 ISAPSKGDVKTIVYGVNHDEYDPSERIVSNASCTTNCLAPLAKVLDEAFGIVSGLMTTVH 178

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q  VDGP  KD R  RAA+ NIIP+STGAAKA+GKVLP L GKLTGM+ RVPT +
Sbjct: 179 SYTNDQNLVDGP-HKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTPN 237

Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VS+VDL V LEK+ T EE+  A+KE +EG+LKG+LGYTE+++VS+DF+G   SSI DA A
Sbjct: 238 VSLVDLVVNLEKDVTVEEVNAALKEAAEGELKGVLGYTEDELVSSDFIGSPYSSIVDATA 297

Query: 305 GIA--LSKNFVKLVSWYDNEWGYSSRVID 331
                L  + VK+V+WYDNEWGYS+RV+D
Sbjct: 298 TKVTGLGDSLVKVVAWYDNEWGYSNRVVD 326

This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two PFAM models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 326

>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score =  416 bits (1069), Expect = e-146
 Identities = 218/333 (65%), Positives = 266/333 (79%), Gaps = 5/333 (1%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 60

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F   + A  H+  GAKKVV+
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+  +S+FDAKAG
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 298

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 299 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331

Length = 331

>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

 Score =  396 bits (1018), Expect = e-138
 Identities = 195/353 (55%), Positives = 250/353 (70%), Gaps = 18/353 (5%)

Query: 7   IKIGINGFGRIGRLVARVALQRD----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           IK+GINGFGRIGR+V +    +     ++++VAV D   + +Y  Y  KYD+VHG+ K+ 
Sbjct: 4   IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYT 63

Query: 63  ELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA 115
               K       D+  ++ G +   V   RNP ++PW K G +YV+ESTG+FTDK  A  
Sbjct: 64  VETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEG 123

Query: 116 HLKGGAKKVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
           HLKGGAKKVVISAP S  A   V+GVN+ EY P E  +VSNASCTTNCLAP+  V+  + 
Sbjct: 124 HLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTKEG 183

Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FGI  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 184 FGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 243

Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGMSFRVPT DVSVVDLT R  ++ + +EI  AIK  S+  +KGILG+T++++VS DF+
Sbjct: 244 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFI 303

Query: 293 GDSRSSIFDAKA----GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
            D+RSSI+D+KA     +   + F K+VSWYDNEWGYS RV+DL+ +MA   A
Sbjct: 304 NDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKDA 356

Length = 361

>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated

 Score =  374 bits (961), Expect = e-130
 Identities = 161/336 (47%), Positives = 229/336 (68%), Gaps = 8/336 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K K+ INGFGRIGR+V R A++    E+VA+N  +  ++ + ++ KYD+VHG++   +  
Sbjct: 2   KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKF---DGT 57

Query: 66  VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
           V+  E  LL   K + +   R+P+E+PW   G + V+E+TG F  K+KA  H++ GAKKV
Sbjct: 58  VEAFEDHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKV 117

Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           +++AP K+  +  VVGVNE +   E   I+SNASCTTNCLAP+ KV+ ++FGI  GLMTT
Sbjct: 118 ILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQFGIENGLMTT 177

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VH+ T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GM+ RVPT
Sbjct: 178 VHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPT 236

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VS+VDL V ++++ T EEI  A K  + G LKGIL ++EE +VS DF  ++ S+I D 
Sbjct: 237 PNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDG 296

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
            + + +    VK+++WYDNEWGYS RV+DL+  +A 
Sbjct: 297 LSTMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVAD 332

Length = 343

>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score =  335 bits (861), Expect = e-114
 Identities = 166/333 (49%), Positives = 226/333 (67%), Gaps = 13/333 (3%)

Query: 7   IKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
           I++ INGFGRIGR   R  L R++  +ELVA+ND   ++D  T  ++ KYDS+ G  K N
Sbjct: 2   IRVAINGFGRIGRNFLRCWLGRENSQLELVAIND---TSDPRTNAHLLKYDSMLG--KLN 56

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
                DE ++    K +     RNP  +PW + G + ++ESTGVF  K+ A+ H++ GAK
Sbjct: 57  ADISADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAK 116

Query: 123 KVVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
           KV+I+AP K  D   +VVGVN  EY  E  +I+SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 117 KVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNFGIIKGT 176

Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  V+P L GKL G++ R
Sbjct: 177 MTTTHSYTGDQRILDA-SHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALR 235

Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           VPT +VSVVDL V++EK    E++   +K+ SEG LKGIL Y++  +VS+D+ G   SSI
Sbjct: 236 VPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSI 295

Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
            DA   + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 296 VDASLTMVMGGDMVKVIAWYDNEWGYSQRVVDL 328

Length = 337

>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A; Provisional

 Score =  327 bits (839), Expect = e-110
 Identities = 159/332 (47%), Positives = 216/332 (65%), Gaps = 6/332 (1%)

Query: 4   DKKIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
           + KIK+ INGFGRIGR   R    R D  +++VA+ND        +++ KYDS  G +  
Sbjct: 58  EAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG-GVKQASHLLKYDSTLGTFD- 115

Query: 62  NELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121
            ++K   +  +    K + V   RNP  +PW + G + V+E TGVF D++ A  H++ GA
Sbjct: 116 ADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGA 175

Query: 122 KKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           KKV+I+AP K D P +VVGVN  +YK    I+SNASCTTNCLAP  KV+  KFGI++G M
Sbjct: 176 KKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKFGIIKGTM 235

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G++ RV
Sbjct: 236 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRV 294

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT +VSVVDL V++EK+   EE+  A ++ +E +LKGIL   +E +VS DF     SS  
Sbjct: 295 PTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTI 354

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
           D+   + +  + VK+V+WYDNEWGYS RV+DL
Sbjct: 355 DSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 386

Length = 395

>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B

 Score =  328 bits (842), Expect = e-110
 Identities = 164/333 (49%), Positives = 225/333 (67%), Gaps = 9/333 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V VND        +++ KYDS+ G +K  +
Sbjct: 75  KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSMLGTFK-AD 132

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           +K+ D++T+    KP+ V   R+P ++PWA+ G + V+E TGVF D   A  H++ GAKK
Sbjct: 133 VKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 192

Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+I+AP+K  D P +VVGVNE +Y  E+ +IVSNASCTTNCLAP  KV+ ++FGIV+G M
Sbjct: 193 VIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTM 252

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G++ RV
Sbjct: 253 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 311

Query: 241 PTVDVSVVDLTVRLEKEA-TYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           PT +VSVVDL V +EK+  T E++  A ++ ++G LKGIL   +  +VS DF     SS 
Sbjct: 312 PTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSST 371

Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
            DA   + +  + VK+V+WYDNEWGYS RV+DL
Sbjct: 372 IDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 404

Length = 442

>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated

 Score =  305 bits (782), Expect = e-103
 Identities = 139/331 (41%), Positives = 204/331 (61%), Gaps = 8/331 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
            IK+GINGFGRIGRL  R A    ++E V +NDP      + ++ ++DSVHG+W H    
Sbjct: 2   TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHE--V 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             +   ++   K +     +   +  W  +G + V+E++GV   K    A+L  G K+VV
Sbjct: 60  TAEGDAIVINGKRIRTTQNKAIADTDW--SGCDVVIEASGVMKTKALLQAYLDQGVKRVV 117

Query: 126 ISAPSKDAPMF--VVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           ++AP K+  +   V+GVN+  + P +  IV+ ASCTTNCLAP+ KVIH+K GI  G MTT
Sbjct: 118 VTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKLGIKHGSMTT 177

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           +H +T TQ  +D P  KD R  RA   ++IP++TG+A A+ ++ P L GKL G + RVP 
Sbjct: 178 IHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL 236

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            + S+ D    +E++ T EE+   +KE +EG+LKGILGY E  +VS D+  D RSSI DA
Sbjct: 237 ANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDA 296

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLI 333
            + + ++   VKL +WYDNEWGY++R  +L 
Sbjct: 297 LSTMVVNGTQVKLYAWYDNEWGYANRTAELA 327

Length = 334

>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

 Score =  277 bits (712), Expect = 1e-94
 Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKA 221
           LAPLAKV++D FGI +GLMTTVH+ TA QK VD PS KD R GRAA+ NIIP+STGAAKA
Sbjct: 1   LAPLAKVLNDNFGIEKGLMTTVHAYTADQKLVD-PSHKDLRRGRAAAPNIIPTSTGAAKA 59

Query: 222 VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY 281
           VG VLP L GKLTGM+FRVPT +VSVVDLTV LEK  T EE+  A+KE +EG LKGILGY
Sbjct: 60  VGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKEAAEGALKGILGY 119

Query: 282 TEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY 319
           TEE +VS+DFVGD  SSIFDAKA I L+ NFVK+V+WY
Sbjct: 120 TEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 157

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Length = 157

>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional

 Score =  275 bits (704), Expect = 6e-91
 Identities = 126/342 (36%), Positives = 198/342 (57%), Gaps = 15/342 (4%)

Query: 7   IKIGINGFGRIGRLVARVAL----QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           I++ INGFGRIGR V R AL    +R ++ +VA+N+     + M ++ KYD+ HG++   
Sbjct: 2   IRVAINGFGRIGRNVLR-ALYESGRRAEITVVAINE-LADAEGMAHLLKYDTSHGRFAW- 58

Query: 63  ELKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121
              V+ E+  LF G+  + +   R+   +PW + G + V++ TGV+  ++   AH+  GA
Sbjct: 59  --DVRQERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGA 116

Query: 122 KKVVISAPSK---DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEG 178
           KKV+ S P     DA + V GVN  + + E  IVSNASCTTNC+ P+ K++ D FGI  G
Sbjct: 117 KKVLFSHPGSNDLDATV-VYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAFGIESG 175

Query: 179 LMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSF 238
            +TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + ++ P  N +   +S 
Sbjct: 176 TVTTIHSAMNDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISV 234

Query: 239 RVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSS 298
           RVPT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D  S+
Sbjct: 235 RVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSA 294

Query: 299 IFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           I D         + +K + W DNEWG+++R++D  + MA   
Sbjct: 295 IVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAAAG 336

Length = 336

>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed

 Score =  266 bits (681), Expect = 1e-85
 Identities = 129/343 (37%), Positives = 193/343 (56%), Gaps = 23/343 (6%)

Query: 13  GFGRIGRLVARVALQR----DDVELVAV-------NDPFISTDYMTYMFKYDSVHGQWKH 61
           GFGRIGRL+AR+ +++    + + L A+        D     +    + + DSVHG +  
Sbjct: 134 GFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGD----LEKRASLLRRDSVHGPFNG 189

Query: 62  NELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAE--YVVESTGVFTDKDKAAAHLKG 119
                ++   ++     + V    +PEE+ +   G     VV++TG + D++  + HLK 
Sbjct: 190 TITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKS 249

Query: 120 -GAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVE 177
            G  KV+++AP K D    V GVN  +   E  IVS ASCTTN + P+ K ++DK+GIV 
Sbjct: 250 KGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKYGIVN 309

Query: 178 GLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMS 237
           G + TVHS T  Q  +D     D R GR+A  N++ + TGAAKAV K LP L GKLTG +
Sbjct: 310 GHVETVHSYTNDQNLIDNYHKGD-RRGRSAPLNMVITETGAAKAVAKALPELAGKLTGNA 368

Query: 238 FRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES-EGKLKGILGYTEE-DVVSTDFVGDS 295
            RVPT +VS+  L + LEKE + EE+   +++ S    L+  + YT+  +VVS+DFVG  
Sbjct: 369 IRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSR 428

Query: 296 RSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
            + + D++A I      V L  WYDNE+GYS +V+ ++  MA 
Sbjct: 429 HAGVVDSQATIVNGNRAV-LYVWYDNEFGYSCQVVRVMEQMAG 470

Length = 477

>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase

 Score =  255 bits (652), Expect = 2e-83
 Identities = 121/329 (36%), Positives = 193/329 (58%), Gaps = 9/329 (2%)

Query: 8   KIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
           ++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++   E+
Sbjct: 1   RVAINGFGRIGRNVLRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA-WEV 58

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
           +  D   L  G+  + V   R+ + +PW + G + V++ TGV+  ++   AH+  GAKKV
Sbjct: 59  RQ-DRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKV 117

Query: 125 VISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           + S P + D    +V GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +TT
Sbjct: 118 LFSHPGASDLDATIVYGVNQDQLRAEHRIVSNASCTTNCIVPVIKLLDDAYGIESGTITT 177

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           +HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RVPT
Sbjct: 178 IHSAMNDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGIERFFPQFNDRFEAIAVRVPT 236

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
           V+V+ +DL+V ++K     E+   +++ ++G L+GI+ YTE  +VS DF  D  S+I D 
Sbjct: 237 VNVTAIDLSVTVKKPVKANEVNLLLQKAAQGALRGIVDYTELPLVSVDFNHDPHSAIVDG 296

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVID 331
                   + VK + W DNEWG+++R++D
Sbjct: 297 TQTRVSGAHLVKTLVWCDNEWGFANRMLD 325

This model represents the small clade of dehydrogenases in gamma-proteobacteria which utilize NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose. This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 325

>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score =  220 bits (562), Expect = 3e-72
 Identities = 86/151 (56%), Positives = 111/151 (73%), Gaps = 4/151 (2%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGRLV R AL +DD+E+VA+ND     + + Y+ KYDSVHG++   E++V
Sbjct: 1   IKVGINGFGRIGRLVLRAALAQDDLEVVAINDLT-DPETLAYLLKYDSVHGRFDG-EVEV 58

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            ++  L+   K + VF  R+P E+PW + G + VVESTGVFT  +KA AHLK GAKKV+I
Sbjct: 59  DEDG-LIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVII 117

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNAS 156
           SAP+KD  P FV GVN ++Y PE DIVSNAS
Sbjct: 118 SAPAKDDDPTFVYGVNHEDYDPEDDIVSNAS 148

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 148

>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

 Score =  216 bits (552), Expect = 1e-70
 Identities = 85/152 (55%), Positives = 109/152 (71%), Gaps = 4/152 (2%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGRLV R AL+R DVE+VA+ND     +Y+ Y+ KYDSVHG++    ++V
Sbjct: 1   IKVGINGFGRIGRLVLRAALERPDVEVVAINDL-TDPEYLAYLLKYDSVHGRFPG-TVEV 58

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           + +  L+   K + VF  R+P  +PW + G + VVE TG FT ++KA+AHLK GAKKV+I
Sbjct: 59  EGD-GLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVII 117

Query: 127 SAPSKDA-PMFVVGVNEKEYKPELDIVSNASC 157
           SAPSKDA P FV GVN  EY  E  I+SNASC
Sbjct: 118 SAPSKDADPTFVYGVNHDEYDGEDHIISNASC 149

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Length = 149

>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score =  198 bits (505), Expect = 4e-61
 Identities = 97/332 (29%), Positives = 176/332 (53%), Gaps = 3/332 (0%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           I +GINGFG +G+ V   +L    V +VAVND  +S  Y+ Y+ + +S         ++V
Sbjct: 3   ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV 62

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             E+ +L G + + V    +  EI W   G +YVVE TG+++ + +   H+ GGAK V +
Sbjct: 63  VGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFV 122

Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           +  S DAP  + G N++     L +    +     LAP+ + +H+ +G+ E   T +H +
Sbjct: 123 AGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGM 182

Query: 187 TATQKT-VDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
              +       + +DWR  R A   I P     A+ V K+LP L G+++G +F+VP    
Sbjct: 183 QPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPVKKG 242

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
             +D+ VR ++  + E + +A+ E +  +L G+L  ++ D++S D + + +   +DA + 
Sbjct: 243 CAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNGK-LCYDATSS 301

Query: 306 IALSKNFV-KLVSWYDNEWGYSSRVIDLIVHM 336
            +  +  V K+V W+D E  Y++R++ L+  +
Sbjct: 302 SSSREGEVHKMVLWFDVECYYAARLLSLVKQL 333

Length = 342

>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 43/235 (18%)

Query: 74  FGEKPVAVFGFRNPEEIP--WAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAP 129
           FG K + V     PE+    +  +  + V  + G       +       A+   VVI   
Sbjct: 47  FGGKSIGV-----PEDAADEFVFSDVDIVFFAAG----GSVSKEVEPKAAEAGCVVIDNS 97

Query: 130 S-----KDAPMFVVGVNE---KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
           S      D P+ V  VN     +Y+    I++N +C+T  L    K +HD FGI   +++
Sbjct: 98  SAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVS 157

Query: 182 TVHSI----------TATQKTVDGPSMKDWRGGRAASFNIIP-----SSTGAAKA----- 221
           T  ++           A Q       +     G   +FN+IP        G  K      
Sbjct: 158 TYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIE 217

Query: 222 --VGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
               K+L   + K++    RVP        +TV  +K+   EEI+  +   + G 
Sbjct: 218 AETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPGV 272

Length = 334

>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 55/249 (22%), Positives = 90/249 (36%), Gaps = 46/249 (18%)

Query: 103 STGVFTDKDKAAAHLKGGAKKVVISAPS-----KDAPMFVVGVNEKEYK--PELDIVSNA 155
           S G    K+ A    K G   +VI   S      D P+ V  VN ++ K      I++N 
Sbjct: 68  SAGGSVSKEFAPKAAKAGV--IVIDNTSAFRMDPDVPLVVPEVNFEDLKEFNPKGIIANP 125

Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT-ATQKTVDG--PSMKDWRGGRAA----- 207
           +C+T  +  + K +HD+  I   +++T  +++ A    V+      K    G        
Sbjct: 126 NCSTIQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAVLEGAEQLPYIQ 185

Query: 208 ----------SFNIIP------------SSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
                     +FN IP                      K++   + K++    RVP    
Sbjct: 186 PKANKFPYQIAFNAIPHIDSFVDDGYTKEEQKMLFETRKIMGIPDLKVSATCVRVPVFTG 245

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKL----KGILGYTEEDVVSTD--FVGDSRSSI 299
               + +  EKE + E+ +  +K     +L     G L  T    V  D  FVG  R  +
Sbjct: 246 HSESINIEFEKEISPEDARELLKNAPGVQLIDDPSGNLYPTPLAAVGVDEVFVGRIRKDL 305

Query: 300 FDAKAGIAL 308
            D   G+ L
Sbjct: 306 PDGN-GLHL 313

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978 [Amino acid biosynthesis, Aspartate family]. Length = 338

>gnl|CDD|179786 PRK04207, PRK04207, glyceraldehyde-3-phosphate dehydrogenase; Provisional

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 6  KIKIGINGFGRIGRLVAR-VALQRDDVELVAVNDPFISTDYMTYM 49
           IK+G+NG+G IG+ VA  VA Q  D+ELV V       DY   +
Sbjct: 1  MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAK--TKPDYEARV 42

Length = 341

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 7  IKIGINGF-GRIGRLVARVALQRDDVELVAV 36
          IK+ + G  GR+GR + +  L+  D ELVA 
Sbjct: 1  IKVAVVGASGRMGRELIKAILEAPDFELVAA 31

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 34/146 (23%)

Query: 6   KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
            IK+ + G  GR+GR +       +D+ELVA  D               S         +
Sbjct: 1   MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP------------GSPLVGQGALGV 48

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPE---EIPWAKTGAEY----VVESTGVFTDKDKAAAHL 117
            + D+   +  +  V +  F  PE   E    +   E+    V+ +TG FT++  A   L
Sbjct: 49  AITDDLEAVLADADVLI-DFTTPEATLEN--LEFALEHGKPLVIGTTG-FTEEQLAE--L 102

Query: 118 KGGAKK--VVISAPSKDAPMFVVGVN 141
           +  AKK  VVI      AP F +GVN
Sbjct: 103 EEAAKKIPVVI------APNFSIGVN 122

Length = 257

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 24/145 (16%)

Query: 6   KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
            IK+ + G  GR+GR + R  L+  D+ELVA  D   S      +              +
Sbjct: 2   MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS----LSLGSDAGELAGLGLLGV 57

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPE------EIPWAKTGAEYVVESTGVFTDKDKAAAHLK 118
            V D+  L+  +  V +  F  PE      E    + G   V+ +TG FT++      L+
Sbjct: 58  PVTDDLLLVKADADVLI-DFTTPEATLENLEFA-LEHGKPLVIGTTG-FTEEQLEK--LR 112

Query: 119 GGAKK--VVISAPSKDAPMFVVGVN 141
             A+K  VVI      AP F +GVN
Sbjct: 113 EAAEKVPVVI------APNFSLGVN 131

Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	100.0
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	100.0
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	100.0
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	100.0
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	100.0
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	100.0
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	100.0
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	100.0
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	100.0
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	100.0
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	100.0
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	100.0
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	100.0
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	100.0
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	100.0
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	100.0
KOG0657	285	consensus Glyceraldehyde 3-phosphate dehydrogenase	100.0
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	100.0
PF02800	157	Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase,	100.0
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	100.0
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	100.0
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	100.0
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	100.0
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	100.0
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	100.0
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	100.0
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	100.0
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	100.0
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	100.0
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	100.0
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	100.0
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	100.0
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	100.0
PLN02383	344	aspartate semialdehyde dehydrogenase	100.0
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	100.0
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	100.0
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	100.0
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	100.0
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	99.92
KOG4777	361	consensus Aspartate-semialdehyde dehydrogenase [Am	99.84
PRK08300	302	acetaldehyde dehydrogenase; Validated	99.64
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	99.63
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.35
PF02774	184	Semialdhyde_dhC: Semialdehyde dehydrogenase, dimer	99.06
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.8
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.77
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.6
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.46
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.38
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.26
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	98.25
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.14
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.13
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.04
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.01
PRK11579	346	putative oxidoreductase; Provisional	97.96
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.94
PRK06270	341	homoserine dehydrogenase; Provisional	97.86
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	97.81
PLN02775	286	Probable dihydrodipicolinate reductase	97.75
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.68
PRK06349	426	homoserine dehydrogenase; Provisional	97.58
PRK10206	344	putative oxidoreductase; Provisional	97.5
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	97.44
PRK08374	336	homoserine dehydrogenase; Provisional	97.4
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	97.32
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.26
PRK06392	326	homoserine dehydrogenase; Provisional	97.17
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.07
PRK06813	346	homoserine dehydrogenase; Validated	97.04
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	96.78
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.69
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.66
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.62
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.5
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.45
COG2344	211	AT-rich DNA-binding protein [General function pred	96.45
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	96.39
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.23
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.17
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	96.04
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.03
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.0
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.94
PLN02700	377	homoserine dehydrogenase family protein	95.88
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.77
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.75
CHL00194	317	ycf39 Ycf39; Provisional	95.72
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	95.64
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.53
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.53
COG2910	211	Putative NADH-flavin reductase [General function p	95.35
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.33
PRK09414	445	glutamate dehydrogenase; Provisional	95.27
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.23
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.97
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	94.94
PLN02256	304	arogenate dehydrogenase	94.83
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.8
PRK08818	370	prephenate dehydrogenase; Provisional	94.67
PRK07417	279	arogenate dehydrogenase; Reviewed	94.63
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	94.34
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	94.31
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	94.1
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.07
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	94.07
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.02
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.87
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.86
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.84
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.64
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.49
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.45
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	93.31
PRK06223	307	malate dehydrogenase; Reviewed	93.29
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	93.2
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.14
PRK08507	275	prephenate dehydrogenase; Validated	93.02
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.0
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	92.9
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	92.89
PTZ00431	260	pyrroline carboxylate reductase; Provisional	92.89
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.85
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	92.73
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	92.7
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.67
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	92.63
PLN00016	378	RNA-binding protein; Provisional	92.47
COG0569	225	TrkA K+ transport systems, NAD-binding component [	92.42
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	92.32
PTZ00082	321	L-lactate dehydrogenase; Provisional	92.27
COG3804	350	Uncharacterized conserved protein related to dihyd	92.22
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	92.2
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.18
PLN02477	410	glutamate dehydrogenase	92.07
PRK07680	273	late competence protein ComER; Validated	92.02
PRK08618	325	ornithine cyclodeaminase; Validated	92.01
PLN02712	667	arogenate dehydrogenase	91.98
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.96
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	91.91
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.81
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	91.69
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	91.49
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	91.49
PLN02688	266	pyrroline-5-carboxylate reductase	90.93
PRK06545	359	prephenate dehydrogenase; Validated	90.91
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.84
PRK08605	332	D-lactate dehydrogenase; Validated	90.8
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	90.77
PTZ00117	319	malate dehydrogenase; Provisional	90.63
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	90.59
PRK06046	326	alanine dehydrogenase; Validated	90.42
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	90.38
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	90.26
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	90.1
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	90.09
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	90.06
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	89.96
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	89.85
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	89.78
PRK06444	197	prephenate dehydrogenase; Provisional	89.62
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	89.54
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	89.36
PLN00203	519	glutamyl-tRNA reductase	89.32
PRK14031	444	glutamate dehydrogenase; Provisional	89.09
PRK06719	157	precorrin-2 dehydrogenase; Validated	89.04
PRK06487	317	glycerate dehydrogenase; Provisional	88.94
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	88.85
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	88.81
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	88.8
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	88.5
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	88.49
PRK14030	445	glutamate dehydrogenase; Provisional	88.49
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	88.39
PRK05442	326	malate dehydrogenase; Provisional	88.3
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	88.29
PRK05479	330	ketol-acid reductoisomerase; Provisional	88.19
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	88.15
PRK07236	386	hypothetical protein; Provisional	88.14
PRK06932	314	glycerate dehydrogenase; Provisional	88.05
PLN02214	342	cinnamoyl-CoA reductase	88.0
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	87.92
PRK14982	340	acyl-ACP reductase; Provisional	87.82
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	87.53
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	87.47
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	87.43
PRK08655	437	prephenate dehydrogenase; Provisional	87.42
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	87.31
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	87.26
PRK07574	385	formate dehydrogenase; Provisional	87.07
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	87.02
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	87.01
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	86.89
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	86.82
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.76
PLN02928	347	oxidoreductase family protein	86.71
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	86.65
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	86.62
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	86.47
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	86.47
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	86.46
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.43
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.23
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	86.16
PRK06436	303	glycerate dehydrogenase; Provisional	86.06
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	85.55
PTZ00325	321	malate dehydrogenase; Provisional	85.51
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	85.34
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	85.32
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	85.28
PRK13243	333	glyoxylate reductase; Reviewed	85.17
PRK12480	330	D-lactate dehydrogenase; Provisional	85.08
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.86
PLN02602	350	lactate dehydrogenase	84.68
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.59
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	84.5
PLN02494	477	adenosylhomocysteinase	84.36
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	84.27
PLN02306	386	hydroxypyruvate reductase	84.26
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.18
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	84.15
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	83.96
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	83.88
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	83.65
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	83.5
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.33
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	83.24
PLN03139	386	formate dehydrogenase; Provisional	83.21
PRK06153	393	hypothetical protein; Provisional	83.17
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	83.15
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	83.11
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	83.1
PLN03209	576	translocon at the inner envelope of chloroplast su	83.04
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	82.67
PLN00112	444	malate dehydrogenase (NADP); Provisional	82.6
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	82.58
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	82.49
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	82.46
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	82.45
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	82.42
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	82.27
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	82.26
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	82.13
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	81.66
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	81.59
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	81.54
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	81.4
PRK07326	237	short chain dehydrogenase; Provisional	81.39
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	81.38
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	81.12
PRK08219	227	short chain dehydrogenase; Provisional	81.05
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.83
PLN02427	386	UDP-apiose/xylose synthase	80.77
PRK08291	330	ectoine utilization protein EutC; Validated	80.59
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	80.4
PLN02712	667	arogenate dehydrogenase	80.13
PRK07340	304	ornithine cyclodeaminase; Validated	80.07

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.1e-107  Score=767.74  Aligned_cols=335  Identities=57%  Similarity=0.948  Sum_probs=319.7

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcC----CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeee--------cCCcc
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV--------KDEKT   71 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~----p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~--------~~~~~   71 (341)
                      ||++||||||||||||.++|++.++    +++|+|+|||+..+.++++|||+|||+||+|+ ++|..        +++ .
T Consensus         1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~~~~~~~~~-~   78 (361)
T PTZ00434          1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK-YTVETTKSSPSVKTDD-V   78 (361)
T ss_pred             CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcC-CceeecccccccccCC-E
Confidence            3668999999999999999998864    68999999997689999999999999999999 89987        566 8


Q ss_pred             eEECCEEEEEE-ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-C
Q 019445           72 LLFGEKPVAVF-GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-E  148 (341)
Q Consensus        72 l~i~g~~i~v~-~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~  148 (341)
                      |.+||+.|.++ +++||++++|++.++|+|+||||.|.+++.+..|+++|+|+|+||||+.| .+++|||+|++.|++ .
T Consensus        79 l~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~  158 (361)
T PTZ00434         79 LVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTE  158 (361)
T ss_pred             EEECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCccc
Confidence            99999999986 89999999999999999999999999999999999999999999999887 689999999999986 4


Q ss_pred             CcEEeCCCCccceecchhHHH-hhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhh
Q 019445          149 LDIVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP  227 (341)
Q Consensus       149 ~~iIsnp~C~tt~Lapllk~L-~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lp  227 (341)
                      ++||||+|||||||+|++|+| |++|||++++|||+|+||++|+++|++++++||++|++++||||++||+++++.+++|
T Consensus       159 ~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPtsTGAAkAv~~VlP  238 (361)
T PTZ00434        159 HHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIP  238 (361)
T ss_pred             CcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccCCcccccCcCcccccccccccccCccCCcchhhhhceecc
Confidence            789999999999999999999 7999999999999999999999999997789999999999999999999999999999


Q ss_pred             hhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcce
Q 019445          228 ALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA  307 (341)
Q Consensus       228 el~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~  307 (341)
                      ||+|||+++++|||+++|+++|+++++++++++|||+++|+++++++|++||+|+|+|+||+||+|++||+|||+.+|++
T Consensus       239 ~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~~Ssi~D~~~t~v  318 (361)
T PTZ00434        239 STKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDNRSSIYDSKATLQ  318 (361)
T ss_pred             ccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCCCCeEEEhhhCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ec----CCeEEEEEEeCCCcchhhhHHHHHHHHhhcc
Q 019445          308 LS----KNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       308 ~~----~~~~k~~~wydne~gy~~r~~d~~~~~~~~~  340 (341)
                      ++    ++++|+++||||||||||||+||+.||.+.+
T Consensus       319 ~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~  355 (361)
T PTZ00434        319 NNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKD  355 (361)
T ss_pred             eccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhcc
Confidence            86    4899999999999999999999999998754

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=100.00  E-value=8.9e-102  Score=732.09  Aligned_cols=329  Identities=66%  Similarity=1.060  Sum_probs=318.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++||||||||||||.++|++++++++|+|+|||. .+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.+++++
T Consensus         2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~-~~~~~~ayll~yDs~hg~~~-~~v~~~~~-~l~v~g~~I~v~~~~   78 (331)
T PRK15425          2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER   78 (331)
T ss_pred             ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC-CCHHHHHHHHccccCCCCcC-CcEEecCC-EEEECCeEEEEEEcC
Confidence            4799999999999999999988889999999996 89999999999999999999 89988887 899999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap  164 (341)
                      +|++++|++.++|+||||||.|.+++++++|+++|||+|++|+|+.+ .|++|||+|++.|+ ..+|||||||+||||+|
T Consensus        79 dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~-~~~IISnaSCtTn~Lap  157 (331)
T PRK15425         79 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAP  157 (331)
T ss_pred             ChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcC-CCCEEECCCcHHHHHHH
Confidence            99999998889999999999999999999999999999999999775 79999999999997 47899999999999999


Q ss_pred             hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeee
Q 019445          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (341)
Q Consensus       165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~  244 (341)
                      ++|+||++|||++++|||+|++|++|.++|+++++++|++|++++|++|+++|+++++++++|+|+||++++++|||+++
T Consensus       158 vlk~L~~~fgI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~gkl~g~avRVPv~~  237 (331)
T PRK15425        158 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN  237 (331)
T ss_pred             HHHHHHHhCCeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccCCeEEEEEEEecccC
Confidence            99999999999999999999999999999999778999999999999999999999999999999999999999999999


Q ss_pred             EeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcc
Q 019445          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWG  324 (341)
Q Consensus       245 g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g  324 (341)
                      ||+.+++++++++++.||++++|+++++++|+|||+|+|+|+||+||+|++||+|||+.+|.+++++++|+++|||||||
T Consensus       238 gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~~~~k~~~WyDNE~g  317 (331)
T PRK15425        238 VSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETG  317 (331)
T ss_pred             eEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecCCEEEEEEEecCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhh
Q 019445          325 YSSRVIDLIVHMAK  338 (341)
Q Consensus       325 y~~r~~d~~~~~~~  338 (341)
                      |||||+|++.||++
T Consensus       318 ys~r~~d~~~~~~~  331 (331)
T PRK15425        318 YSNKVLDLIAHISK  331 (331)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999864

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-101  Score=732.37  Aligned_cols=332  Identities=67%  Similarity=1.081  Sum_probs=320.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++||||||||||||.++|++++++++|+|+|||+..+.++++|||+|||+||+|+ +++..+++ .|.+||+.|++++++
T Consensus         2 ~~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~~~~~~   79 (337)
T PTZ00023          2 VVKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLP-AEVSVTDG-FLMIGSKKVHVFFEK   79 (337)
T ss_pred             ceEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCC-CcEEecCC-EEEECCeEEEEEeCC
Confidence            4799999999999999999988889999999997689999999999999999999 99988887 899999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap  164 (341)
                      +|+++||++.++|+||||||.+.++++++.|+++|||+|++|+|..+ .|++|||+|++.|++..+|||||||+|+||+|
T Consensus        80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~Lap  159 (337)
T PTZ00023         80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAP  159 (337)
T ss_pred             ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHHHH
Confidence            99999999999999999999999999999999999999999998775 79999999999998667899999999999999


Q ss_pred             hhHHHhhhcceeEEEEEEEeeccCcceeeeCCC--CCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (341)
Q Consensus       165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s--~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~  242 (341)
                      ++|+||++|||++++|||+|++|.+|.++|+++  .+++|++|++++|+||+.+|+++++.+++|||++|++++++|||+
T Consensus       160 ~lk~L~~~fgI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkl~g~avRVPt  239 (337)
T PTZ00023        160 LAKVVNDKFGIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPV  239 (337)
T ss_pred             HHHHHHHhcCeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheecccCCcEEEEEEEecc
Confidence            999999999999999999999999999999986  378999999999999999999999999999999999999999999


Q ss_pred             eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE  322 (341)
Q Consensus       243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne  322 (341)
                      ++||+.+++++++++++.|||+++|+++++++|+|||+|+++|+||+||+|++||+|||+.+|.+++++++|+++|||||
T Consensus       240 ~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v~~~~~~k~~~WyDNE  319 (337)
T PTZ00023        240 PDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIALNDTFVKLVSWYDNE  319 (337)
T ss_pred             cCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeEecCCEEEEEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHHHhhc
Q 019445          323 WGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       323 ~gy~~r~~d~~~~~~~~  339 (341)
                      |||||||+|++.||.++
T Consensus       320 ~gys~r~~d~~~~~~~~  336 (337)
T PTZ00023        320 WGYSNRLLDLAHYITQK  336 (337)
T ss_pred             hhHHHHHHHHHHHHhhc
Confidence            99999999999999765

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=100.00  E-value=8.6e-102  Score=747.85  Aligned_cols=331  Identities=49%  Similarity=0.818  Sum_probs=316.7

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeee-cCCcceEECCEEEEE
Q 019445            5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAV   81 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~-~~~~~l~i~g~~i~v   81 (341)
                      |++||||||||||||.++|++.++  +++|||+|||. .+.++++|||+|||+||+|+ ++|+. +++ .|.++|+.|.+
T Consensus        74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~-~~~~~~ayLlkyDS~hG~f~-~~v~~~~~~-~L~v~Gk~I~V  150 (442)
T PLN02237         74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSMLGTFK-ADVKIVDDE-TISVDGKPIKV  150 (442)
T ss_pred             ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC-CCHHHHHHHHccccCCCCcC-CceEECCCC-EEEECCEEEEE
Confidence            458999999999999999998755  68999999996 79999999999999999999 89976 555 89999999999


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCC-CcEEeCCCCc
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPE-LDIVSNASCT  158 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~-~~iIsnp~C~  158 (341)
                      +++++|.+++|++.++|+||||||.|.+++++++|+++|+|+|++|+|..|  +|++|||||++.|++. .+|||||||+
T Consensus       151 ~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCT  230 (442)
T PLN02237        151 VSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCT  230 (442)
T ss_pred             EEcCCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchH
Confidence            998899999998889999999999999999999999999999999999765  6999999999999865 7899999999


Q ss_pred             cceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEE
Q 019445          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSF  238 (341)
Q Consensus       159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~  238 (341)
                      ||||+|++|+||++|||++++|||+|++|++|+++|+++ ++||++|++++||||++||+++++.+++|||+|||+++++
T Consensus       231 TNcLAPvlkvL~d~fGI~~g~mTTvHs~T~dQ~~~D~~h-~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~  309 (442)
T PLN02237        231 TNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIAL  309 (442)
T ss_pred             HHHHHHHHHHHHHhcCeeEEEEEEEEeccCCcccccCCC-cccccccccccccccCCcchhhhhceecccCCCceeeEEE
Confidence            999999999999999999999999999999999999986 7999999999999999999999999999999999999999


Q ss_pred             EeeeeeEeeEEEEEEeCC-CCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEE
Q 019445          239 RVPTVDVSVVDLTVRLEK-EATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVS  317 (341)
Q Consensus       239 rVP~~~g~~~~l~v~l~~-~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~  317 (341)
                      |||+++|+++|+++++++ ++++|||+++|++++++++++||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++
T Consensus       310 RVPt~nvS~vDLt~~l~k~~~t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~a  389 (442)
T PLN02237        310 RVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVA  389 (442)
T ss_pred             ecccCCceEEEEEEEeCCCCCCHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEE
Confidence            999999999999999998 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcchhhhHHHHHHHHhhc
Q 019445          318 WYDNEWGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       318 wydne~gy~~r~~d~~~~~~~~  339 (341)
                      ||||||||||||+||+.||.++
T Consensus       390 WYDNEwGys~R~~dl~~~~~~~  411 (442)
T PLN02237        390 WYDNEWGYSQRVVDLAHLVAAK  411 (442)
T ss_pred             EeCCchhHHHHHHHHHHHHHHh
Confidence            9999999999999999999874

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=4.8e-101  Score=727.88  Aligned_cols=332  Identities=48%  Similarity=0.815  Sum_probs=318.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |+||||||||||||.++|+++++  +++|+|+|||. .+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.+++
T Consensus         1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~I~v~~   77 (337)
T PRK07403          1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT-SDPRTNAHLLKYDSMLGKLN-ADISADEN-SITVNGKTIKCVS   77 (337)
T ss_pred             CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC-CCHHHHHHHHhhccCCCCCC-CcEEEcCC-EEEECCEEEEEEE
Confidence            47999999999999999998876  57999999997 78999999999999999999 99988777 8999999999999


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCC-CCcEEeCCCCccc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTN  160 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt  160 (341)
                      ++||++++|++.++|+||||||.|.++++++.|+++|||+|++|+|..|  .|++|||+|++.|++ ..+|||||||+||
T Consensus        78 ~~dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn  157 (337)
T PRK07403         78 DRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTN  157 (337)
T ss_pred             cCCcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHH
Confidence            8999999999889999999999999999999999999999999998654  599999999999974 3689999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV  240 (341)
                      ||+|++|+||++|||++++|||+|++|++|+++|+++ +++|++|++++||||++||+++++.+++|+|+||++++++||
T Consensus       158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~-~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRV  236 (337)
T PRK07403        158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASH-RDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRV  236 (337)
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccc-cccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEe
Confidence            9999999999999999999999999999999999986 699999999999999999999999999999999999999999


Q ss_pred             eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD  320 (341)
Q Consensus       241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  320 (341)
                      |+++||++++++++++++++|||+++|+++++++|++||+|+++|+||+||+|++||+|||+.+|.+++++++|+++|||
T Consensus       237 Pt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~k~~~WyD  316 (337)
T PRK07403        237 PTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGGDMVKVIAWYD  316 (337)
T ss_pred             ccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecCCEEEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHHHhhccC
Q 019445          321 NEWGYSSRVIDLIVHMAKTQA  341 (341)
Q Consensus       321 ne~gy~~r~~d~~~~~~~~~~  341 (341)
                      |||||||||+||+.||.++.|
T Consensus       317 NE~Gys~r~~dl~~~~~~~~~  337 (337)
T PRK07403        317 NEWGYSQRVVDLAELVARKWK  337 (337)
T ss_pred             CchhHHHHHHHHHHHHHhhcC
Confidence            999999999999999987543

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=5.9e-100  Score=721.09  Aligned_cols=331  Identities=48%  Similarity=0.830  Sum_probs=317.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++||||||||||||.++|++++++++|+|+|||. .+.++++|||+|||+||+|+ ++++.+++ .|.++|+.+.+++++
T Consensus         2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~-~~~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~v~g~~I~v~~~~   78 (343)
T PRK07729          2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKKIRLLNNR   78 (343)
T ss_pred             ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEEEcC
Confidence            4799999999999999999888889999999997 79999999999999999999 89988877 899999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-CCcEEeCCCCccceec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLA  163 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt~La  163 (341)
                      +|++++|++.++|+||||||.|.++++++.|+++|||+|++|+|..| ++++|||+|++.|++ ..+|||||||+||||+
T Consensus        79 dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~La  158 (343)
T PRK07729         79 DPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLA  158 (343)
T ss_pred             ChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHHH
Confidence            99999998889999999999999999999999999999999999665 567899999999985 3689999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+||++|||++++|||+|++|++|+++|+++ +++|++|++++|++|++||+++++.+++|+|+||++++++|||++
T Consensus       159 p~lk~L~~~fgI~~~~mTTiha~T~~Q~~~D~~~-~d~rr~R~a~~niiPtstgaa~ai~~viP~l~gkl~g~avRVPt~  237 (343)
T PRK07729        159 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP  237 (343)
T ss_pred             HHHHHHHHhcCeeEEEEEEEecccCcccccccch-hhhhcccccccceecCCCcchhhHHHhccccCCeEEEEEEEeeec
Confidence            9999999999999999999999999999999986 699999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCc
Q 019445          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEW  323 (341)
Q Consensus       244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  323 (341)
                      +||++++++++++++++|||+++|+++++++|+|||+|+|+|+||+||+|++||+|||+.+|.+++++|+|+++||||||
T Consensus       238 ~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~~~~K~~~WYDNE~  317 (343)
T PRK07729        238 NVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEW  317 (343)
T ss_pred             CeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecCCEEEEEEEecCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHhhcc
Q 019445          324 GYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       324 gy~~r~~d~~~~~~~~~  340 (341)
                      ||||||+||+.||.+++
T Consensus       318 Gys~r~~dl~~~~~~~~  334 (343)
T PRK07729        318 GYSCRVVDLVTLVADEL  334 (343)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999998753

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=100.00  E-value=4.2e-99  Score=718.01  Aligned_cols=336  Identities=91%  Similarity=1.370  Sum_probs=322.6

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCc-eeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~-~v~~~~~~~l~i~g~~i   79 (341)
                      |++. ++||||||||||||.++|.+.++|++||++|+|+..+.++++|||+|||+||+|+ + +++.++++.|.++|+.+
T Consensus         1 ~~~~-~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~-~~~v~~~~g~~l~~~g~~i   78 (338)
T PLN02358          1 MADK-KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWK-HHELKVKDDKTLLFGEKPV   78 (338)
T ss_pred             CCCC-ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcC-CCeEEECCCCEEEECCEEE
Confidence            7775 5899999999999999999998999999999997789999999999999999998 6 88875554799999999


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCcc
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTT  159 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~t  159 (341)
                      .++++.+|++++|++.++|+||||||.|.++++++.|+++|+|+|++|+|+.|.|++|||+|++.|++..+|||||||||
T Consensus        79 ~v~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~dvp~iV~gVN~~~~~~~~~IISnasCTT  158 (338)
T PLN02358         79 TVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDLDIVSNASCTT  158 (338)
T ss_pred             EEEEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCCCCeEecCcCHHHhCCCCCEEECCCchH
Confidence            99999999999998889999999999999999999999999999999999888899999999999986678999999999


Q ss_pred             ceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEE
Q 019445          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR  239 (341)
Q Consensus       160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~r  239 (341)
                      |||+|++|+||++|||+++.|||+|++|++|.++|+++.+++|++|++++|+||+++|+++++++++|+|++|++++++|
T Consensus       159 n~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP~l~gkl~g~avR  238 (338)
T PLN02358        159 NCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFR  238 (338)
T ss_pred             HHHHHHHHHHHHhcCeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccccCCCcEEEEEEE
Confidence            99999999999999999999999999999999999997789999999999999999999999999999999999999999


Q ss_pred             eeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEe
Q 019445          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY  319 (341)
Q Consensus       240 VP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wy  319 (341)
                      ||+++||+.++++++++++++||++++|+++++++|++||+|+|+|+||+||+|++||+|||+.+|.+++++++|+++||
T Consensus       239 VPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~vk~~~Wy  318 (338)
T PLN02358        239 VPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWY  318 (338)
T ss_pred             eeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeEecCCEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhhhHHHHHHHHhh
Q 019445          320 DNEWGYSSRVIDLIVHMAK  338 (341)
Q Consensus       320 dne~gy~~r~~d~~~~~~~  338 (341)
                      ||||||||||+||+.||.+
T Consensus       319 DNE~gys~r~~dl~~~~~~  337 (338)
T PLN02358        319 DNEWGYSSRVVDLIVHMSK  337 (338)
T ss_pred             cCchhHHHHHHHHHHHHhc
Confidence            9999999999999999864

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=100.00  E-value=5.7e-99  Score=727.62  Aligned_cols=333  Identities=77%  Similarity=1.183  Sum_probs=320.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeee-cCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~-~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||||||||||.++|.+.+++++++++|||++.+.++++|||+|||+||+|+ ++|+. +++ .|.++|+.+.++++
T Consensus        85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~-~~v~~~~~~-~l~~~G~~I~V~~~  162 (421)
T PLN02272         85 KTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFK-GTINVVDDS-TLEINGKQIKVTSK  162 (421)
T ss_pred             ceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCC-CcEEEccCC-EEEECCEEEEEEec
Confidence            3799999999999999999887778999999998789999999999999999999 99986 666 89999999999999


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap  164 (341)
                      ++|++++|++.++|+||||||.|.++++++.|+++|+|+|+||+|++|.|++|||||++.|++..+|||||||+||||+|
T Consensus       163 ~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap  242 (421)
T PLN02272        163 RDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAP  242 (421)
T ss_pred             CCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCCCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHH
Confidence            99999999888999999999999999999999999999999999988889999999999998667899999999999999


Q ss_pred             hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeee
Q 019445          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (341)
Q Consensus       165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~  244 (341)
                      ++|+||++|||++++|||+|++|++|.++|++++++++++|++++|+||+.+|+++++.+++|+|+||++++++|||+++
T Consensus       243 ~lk~L~~~fGI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~gkl~gtaVRVPv~~  322 (421)
T PLN02272        243 LAKVVHEEFGILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN  322 (421)
T ss_pred             HHHHHHHhCCeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCCcEEEEEEEeccCc
Confidence            99999999999999999999999999999999778999999999999999999999999999999999999999999999


Q ss_pred             EeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcc
Q 019445          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWG  324 (341)
Q Consensus       245 g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g  324 (341)
                      ||+++++++++++++.|||+++|+++++++|+|||+|+|+|+||+||+|++||+|||+.+|++++++++|+++|||||||
T Consensus       323 gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~~vKv~~WYDNEwG  402 (421)
T PLN02272        323 VSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWG  402 (421)
T ss_pred             eEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCCEEEEEEEecCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcc
Q 019445          325 YSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       325 y~~r~~d~~~~~~~~~  340 (341)
                      |||||+|++.||.+.+
T Consensus       403 ys~R~~dl~~~~~~~~  418 (421)
T PLN02272        403 YSNRVLDLIEHMALVA  418 (421)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999997653

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=100.00  E-value=3.7e-99  Score=725.76  Aligned_cols=333  Identities=47%  Similarity=0.780  Sum_probs=318.2

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            5 KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |++||||||||||||.++|+|.++  |.+||++|||. .+.++++|||+|||+||+|+ ++++..+++.|.++|+.|.++
T Consensus        59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~-~~~~~~ayLl~yDS~hG~f~-~~v~~~~g~~l~v~gk~I~v~  136 (395)
T PLN03096         59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT-GGVKQASHLLKYDSTLGTFD-ADVKPVGDDAISVDGKVIKVV  136 (395)
T ss_pred             cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC-CCHHHHHHHHhhcccCCCcC-CcEEEecCCEEEECCEEEEEE
Confidence            458999999999999999999876  78999999997 78999999999999999999 898764443899999999999


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccce
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNC  161 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~  161 (341)
                      +++||++++|++.++|+||||||.|.+++++++|+++|||+|++|+|..+ +|++|||+|++.|++..+|||||||||||
T Consensus       137 ~~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~  216 (395)
T PLN03096        137 SDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNC  216 (395)
T ss_pred             EcCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHH
Confidence            99999999998889999999999999999999999999999999999765 79999999999998667899999999999


Q ss_pred             ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEee
Q 019445          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (341)
Q Consensus       162 Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP  241 (341)
                      |+|++|+||++|||++++|||+|++|++|.++|+++ +++|++|++++|+||+++|+++++.+++|+|+||++++++|||
T Consensus       217 LAp~lkvL~~~fGI~~g~mTTiHa~T~~Q~llD~~~-~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVP  295 (395)
T PLN03096        217 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVP  295 (395)
T ss_pred             HHHHHHHHHHhcCeeEEEEEEEEccccccccccCCC-CccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEcc
Confidence            999999999999999999999999999999999986 6999999999999999999999999999999999999999999


Q ss_pred             eeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCC
Q 019445          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDN  321 (341)
Q Consensus       242 ~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydn  321 (341)
                      +++||++++++++++++++|||+++|+++++++|++||+|+++|+||+||+|++||+|||+.+|.+++++++|+++||||
T Consensus       296 v~~gs~~dltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDN  375 (395)
T PLN03096        296 TPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDN  375 (395)
T ss_pred             ccceEEEEEEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhhHHHHHHHHhhcc
Q 019445          322 EWGYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       322 e~gy~~r~~d~~~~~~~~~  340 (341)
                      ||||||||+|++.||+++.
T Consensus       376 E~Gys~r~~dl~~~~~~~~  394 (395)
T PLN03096        376 EWGYSQRVVDLADIVANKW  394 (395)
T ss_pred             chhHHHHHHHHHHHHHhhc
Confidence            9999999999999998754

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=6.3e-97  Score=700.21  Aligned_cols=332  Identities=29%  Similarity=0.541  Sum_probs=313.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECC-EEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE-KPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g-~~i~v~~~   84 (341)
                      ++||||||||||||.++|++++++++|+|+|||+..+.++++|||+|||+||+|+..+++.+++ .|.+|| +.|.++++
T Consensus         2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~-~l~i~g~~~i~~~~~   80 (342)
T PTZ00353          2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGE-QIVLNGTQKIRVSAK   80 (342)
T ss_pred             CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCC-EEecCCCeEEEEEec
Confidence            3799999999999999999888889999999997689999999999999999995158888777 899998 89999999


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap  164 (341)
                      ++|++++|++.++|+||||||.|.+.+.+..|+++|+|+|++|+|+.|.|++|||+|++.|++..+||||||||||||+|
T Consensus        81 ~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d~p~vV~gVN~~~~~~~~~IISnaSCTTn~Lap  160 (342)
T PTZ00353         81 HDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAP  160 (342)
T ss_pred             CCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCCCCeEEecCChHHcCCCCCEEECCCHHHHHHHH
Confidence            99999999988999999999999999999999999999999999998899999999999998667899999999999999


Q ss_pred             hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCC--CCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (341)
Q Consensus       165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~--~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~  242 (341)
                      ++|+||++|||++++|||+|+|+ .|...|++++  +++|++|.+++||+|+.+|+++++.+++|+|+||++++++|||+
T Consensus       161 vlkvL~~~fGI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kVlP~L~gkl~g~avRVPt  239 (342)
T PTZ00353        161 VIRALHEVYGVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLVGRISGSAFQVPV  239 (342)
T ss_pred             HHHHHHHhcCeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhhccccCCcEEEEEEEccc
Confidence            99999999999999999999996 6776777653  79999999999999999999999999999999999999999999


Q ss_pred             eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCccee-cCCeEEEEEEeCC
Q 019445          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIAL-SKNFVKLVSWYDN  321 (341)
Q Consensus       243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~-~~~~~k~~~wydn  321 (341)
                      ++||++++++++++++++|||+++|+++++++|+|||+|+|+|+||+||+|++ |+|||+.+|+++ +++++|+++||||
T Consensus       240 ~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t~~~~~~~~vKv~~WYDN  318 (342)
T PTZ00353        240 KKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSSSSSREGEVHKMVLWFDV  318 (342)
T ss_pred             cCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccCeEEeCCCEEEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999999 599999999995 8899999999999


Q ss_pred             CcchhhhHHHHHHHHhhcc
Q 019445          322 EWGYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       322 e~gy~~r~~d~~~~~~~~~  340 (341)
                      ||||||||+|++.||.+..
T Consensus       319 E~Gys~r~~dl~~~~~~~~  337 (342)
T PTZ00353        319 ECYYAARLLSLVKQLHQIH  337 (342)
T ss_pred             chHHHHHHHHHHHHHHhcc
Confidence            9999999999999998754

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=9.7e-97  Score=700.60  Aligned_cols=329  Identities=36%  Similarity=0.686  Sum_probs=315.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC---CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~---p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |+||||||||+|||+++|+|+++   +++++++|||. .+.++++|||+|||+||+|+ ++++.+++ .|.++|+.+.++
T Consensus         1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~-~~~~~~ayll~ydS~hg~~~-~~v~~~~~-~l~v~g~~i~v~   77 (336)
T PRK13535          1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL-ADAEGMAHLLKYDTSHGRFA-WDVRQERD-QLFVGDDAIRLL   77 (336)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC-CCHHHHHHHhhhccCCCCCC-CcEEecCC-EEEECCEEEEEE
Confidence            36999999999999999999874   57999999997 79999999999999999999 99988777 899999999999


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-C-CCeeeeccCccccCCCCcEEeCCCCccc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTN  160 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt  160 (341)
                      ++++|++++|+..++|+||||||.+.++++++.|+++|+|+|++|+|++ | .+++|||+|++.|++..+||||||||||
T Consensus        78 ~~~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn  157 (336)
T PRK13535         78 HERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTN  157 (336)
T ss_pred             EcCCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHH
Confidence            9999999999888999999999999999999999999999999999986 5 4589999999999866789999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV  240 (341)
                      ||+|++|+||++|||++++|||+||+|++|+++|+++ +++|++|.+++|+||+.++.++++.+++|+|++|++++++||
T Consensus       158 ~Lap~lk~L~~~fgI~~~~mTT~ha~t~~Q~~vD~~~-~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~gkv~~~avRV  236 (336)
T PRK13535        158 CIIPVIKLLDDAFGIESGTVTTIHSAMNDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAISVRV  236 (336)
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEEhhcCCcchhhchh-hccccccEeeeccccCccHHHhhhhhcccCCCCcEEEEEEEe
Confidence            9999999999999999999999999999999999986 699999999999999999999999999999999999999999


Q ss_pred             eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD  320 (341)
Q Consensus       241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  320 (341)
                      |+++||+.+++++++++++.||++++|+++++++|+|||+|+++|+||+||+|++||+|||+.+|.+++++|+|+++|||
T Consensus       237 Pv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyD  316 (336)
T PRK13535        237 PTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCD  316 (336)
T ss_pred             CccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCCEEEEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHHHhh
Q 019445          321 NEWGYSSRVIDLIVHMAK  338 (341)
Q Consensus       321 ne~gy~~r~~d~~~~~~~  338 (341)
                      |||||||||+|++.||.+
T Consensus       317 NE~gys~r~~d~~~~~~~  334 (336)
T PRK13535        317 NEWGFANRMLDTTLAMAA  334 (336)
T ss_pred             CchHHHHHHHHHHHHHhh
Confidence            999999999999999964

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=100.00  E-value=9.6e-97  Score=700.83  Aligned_cols=329  Identities=42%  Similarity=0.762  Sum_probs=315.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++||||+|||||||.++|.+.++++++|++++++..+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.+++++
T Consensus         2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~-~~v~~~g~-~l~~~g~~i~v~~~~   79 (334)
T PRK08955          2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWH-HEVTAEGD-AIVINGKRIRTTQNK   79 (334)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCC-CCEEEcCC-EEEECCEEEEEEecC
Confidence            4799999999999999999999999999999997789999999999999999999 89987776 899999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCC-CcEEeCCCCcccee
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPE-LDIVSNASCTTNCL  162 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~-~~iIsnp~C~tt~L  162 (341)
                      +|++++|+  ++|+||||||.+.++++++.|+++|||+|++|+|..|  .|++|||+|++.|++. .+|||||||+||||
T Consensus        80 ~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn~L  157 (334)
T PRK08955         80 AIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCL  157 (334)
T ss_pred             ChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHHHH
Confidence            99999996  9999999999999999999999999999999999654  6999999999999863 68999999999999


Q ss_pred             cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (341)
Q Consensus       163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~  242 (341)
                      +|++|+||++|||++++|||+|++|++|.++|+++ +++|++|++++|+||+.+|+++++.+++|+|+||++++++|||+
T Consensus       158 ap~lk~L~~~fgI~~~~mTTvha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~L~gkl~~~avRVPv  236 (334)
T PRK08955        158 APVVKVIHEKLGIKHGSMTTIHDLTNTQTILDAPH-KDLRRARACGMSLIPTTTGSATAITEIFPELKGKLNGHAVRVPL  236 (334)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEeccCccccccCCC-cccccchhheeccccccCCCccccceEccccCCcEEEEEEEecc
Confidence            99999999999999999999999999999999987 58899999999999999999999999999999999999999999


Q ss_pred             eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE  322 (341)
Q Consensus       243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne  322 (341)
                      ++||+.+++++++++++.|||+++|+++++++|++||+|+|+|+||+||+|++||+|||+.+|.+++|+++|+++|||||
T Consensus       237 ~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE  316 (334)
T PRK08955        237 ANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNE  316 (334)
T ss_pred             CCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEecCCEEEEEEEeCCc
Confidence            99999999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHHHhhc
Q 019445          323 WGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       323 ~gy~~r~~d~~~~~~~~  339 (341)
                      |||||||+||+.||.+-
T Consensus       317 ~gys~r~~dl~~~~~~~  333 (334)
T PRK08955        317 WGYANRTAELARKVGLA  333 (334)
T ss_pred             hhHHHHHHHHHHHHhcC
Confidence            99999999999999753

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.3e-96  Score=681.51  Aligned_cols=332  Identities=62%  Similarity=0.964  Sum_probs=319.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||||||||||.++|++.+++ ++|+|+||+. .+++++||||+|||+||+|. +++..+++ .+.++|+.|+++.+
T Consensus         1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~-t~~~~~A~LlkyDs~hg~f~-~~v~~~~~-~~~v~g~~I~v~~~   77 (335)
T COG0057           1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDL-TDPDYLAHLLKYDSVHGRFD-GEVEVKDD-ALVVNGKGIKVLAE   77 (335)
T ss_pred             CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC-CCHHHHHHHHhhcccCCCCC-CcccccCC-eEEECCceEEEEec
Confidence            479999999999999999999998 7999999998 89999999999999999999 88877676 89999999999999


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhC-CCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCcccee
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG-GAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCL  162 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~-G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~L  162 (341)
                      ++|+.++|.+.++|+|+||||.|.+++.+++|+++ |+|+|++|||+.+ ++++|||+|++.+++++++|||+|||||||
T Consensus        78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcL  157 (335)
T COG0057          78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCL  157 (335)
T ss_pred             CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhh
Confidence            99999999999999999999999999999999988 5999999999987 999999999999988899999999999999


Q ss_pred             cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (341)
Q Consensus       163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~  242 (341)
                      +|++|+|+++|||++++|||+|++|++|.++|||| ++||++|++++|+||++||+++++.+++|||+|||+++++|||+
T Consensus       158 ap~~kvl~d~fGI~~g~mTtVh~~T~dQ~~~dgph-~~~rr~raa~~niIp~sTgaAkav~~VlP~L~gKl~g~A~RVPt  236 (335)
T COG0057         158 APVAKVLNDAFGIEKGLMTTVHAYTNDQKLVDGPH-KDLRRARAAALNIIPTSTGAAKAVGLVLPELKGKLTGMAIRVPT  236 (335)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEcccCCCccccCcc-cchhhhccccCCCCcCCCcchhhhhhhCcccCCceeeEEEEecC
Confidence            99999999999999999999999999999999997 58999999999999999999999999999999999999999999


Q ss_pred             eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE  322 (341)
Q Consensus       243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne  322 (341)
                      +++|++++++++++++++|||+++|+++++.+|+++++|+|+|+||+||+|++||+|||+.+|.+.+++|+|+++|||||
T Consensus       237 ~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~~vk~~~wydNE  316 (335)
T COG0057         237 PNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGNLVKLVAWYDNE  316 (335)
T ss_pred             CCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCcEEEEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             cchhhhHHHHHHHHhhccC
Q 019445          323 WGYSSRVIDLIVHMAKTQA  341 (341)
Q Consensus       323 ~gy~~r~~d~~~~~~~~~~  341 (341)
                      |||++|++|+..++....+
T Consensus       317 ~gys~r~vD~~~~~~~~~~  335 (335)
T COG0057         317 WGYSNRVVDLLAMVAKALK  335 (335)
T ss_pred             ccchHHHHHHHHHHhhhcC
Confidence            9999999999888776543

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=100.00  E-value=1.2e-94  Score=684.61  Aligned_cols=321  Identities=59%  Similarity=0.976  Sum_probs=306.6

Q ss_pred             eEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCE-EEEEEec
Q 019445            8 KIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK-PVAVFGF   84 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~-~i~v~~~   84 (341)
                      ||||||||||||.++|+++++  +++|+|+|||. .+.++++|||+|||+||+|+ ++++.++++.|.++|+ .+.++++
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~~~l~i~g~~~i~v~~~   78 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL-TDLEYLAYLLKYDSVHGRFE-GEVTADEDKGLVVNGKFVIVVASE   78 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhccCCceEEEEEecC-CCHHHHHHHhcccCCCCCCC-CcEEecCCceEEECCeEEEEEEec
Confidence            799999999999999998877  57999999997 89999999999999999999 8998766524999999 9999999


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~La  163 (341)
                      ++|++++|++.++|+||||||.|.++++++.|+++|||+|++|+|+.| +|++|||+|++.|+++.+|||||||+||||+
T Consensus        79 ~dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~La  158 (327)
T TIGR01534        79 RDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLA  158 (327)
T ss_pred             CCcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHH
Confidence            999999998889999999999999999999999999999999999767 7999999999999866789999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+||++|||+++.|||+|++|++|.++|+++ ++++++|++++|++|+.+|+++++.+++|+|++|++++++|||++
T Consensus       159 p~lk~L~~~fgI~~~~~TTiha~t~~q~lld~~~-~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gkv~~~avRVPv~  237 (327)
T TIGR01534       159 PLAKVLDEAFGIVSGLMTTVHSYTNDQNLVDGPH-KDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKLTGMAIRVPTP  237 (327)
T ss_pred             HHHHHHHHhcCeeEEEEEEEEeecCccccccCCC-CCCcCceEeEeeeeccCCChHHHHhhccccCCCeEEEEEEEeccc
Confidence            9999999999999999999999999999999986 688999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceec--CCeEEEEEEeCC
Q 019445          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS--KNFVKLVSWYDN  321 (341)
Q Consensus       244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~--~~~~k~~~wydn  321 (341)
                      +||+.++++++++++++|||+++|+++++++|++|++|+|+|+||+||+|++||+|||+.+|.+++  ++++|+++||||
T Consensus       238 ~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~~~~k~~~WyDN  317 (327)
T TIGR01534       238 NVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGGSLVKVVAWYDN  317 (327)
T ss_pred             CeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCCCEEEEEEEeCC
Confidence            999999999999999999999999999999999999999999999999999999999999999954  899999999999


Q ss_pred             CcchhhhHHH
Q 019445          322 EWGYSSRVID  331 (341)
Q Consensus       322 e~gy~~r~~d  331 (341)
                      ||||||||+|
T Consensus       318 E~gys~r~~d  327 (327)
T TIGR01534       318 EWGYSNRVVD  327 (327)
T ss_pred             CceeeeEccC
Confidence            9999999986

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=100.00  E-value=3.9e-94  Score=695.60  Aligned_cols=331  Identities=39%  Similarity=0.623  Sum_probs=314.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC----CCcEEEEeeCC---CCChhhhhhhcccccccCcccCceeeec--CCcceEECC
Q 019445            6 KIKIGINGFGRIGRLVARVALQR----DDVELVAVNDP---FISTDYMTYMFKYDSVHGQWKHNELKVK--DEKTLLFGE   76 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~----p~~elv~i~~~---~~~~~~~a~ll~~ds~~g~~~~~~v~~~--~~~~l~i~g   76 (341)
                      +.||||||||||||.++|++.++    ++++|++||.+   ..+.++++|||+|||+||+|+ +++..+  ++ .|.+||
T Consensus       127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~-~~v~~~~~~~-~liing  204 (477)
T PRK08289        127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFN-GTITVDEENN-AIIANG  204 (477)
T ss_pred             CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCC-CceEeecCCC-EEEECC
Confidence            56999999999999999999876    57999999631   267899999999999999999 899876  45 899999


Q ss_pred             EEEEEEecCCCCCCCccCCCcc--EEEecCCCccCHHHHHHHHh-CCCcEEEecCCCCC-CCeeeeccCccccCCCCcEE
Q 019445           77 KPVAVFGFRNPEEIPWAKTGAE--YVVESTGVFTDKDKAAAHLK-GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIV  152 (341)
Q Consensus        77 ~~i~v~~~~~~~~~~w~~~~~D--vV~~at~~~~s~~~~~~~l~-~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iI  152 (341)
                      +.|.++++.+|+++||++.|+|  +|+||||.|.+.+.+.+|++ +|+|+|+||||+.+ +|++|||+|++.|+++.+||
T Consensus       205 ~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~II  284 (477)
T PRK08289        205 NYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIV  284 (477)
T ss_pred             EEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEE
Confidence            9999999999999999999999  99999999999999999999 89999999999886 89999999999998667899


Q ss_pred             eCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCc
Q 019445          153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK  232 (341)
Q Consensus       153 snp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~  232 (341)
                      ||||||||||+|++|+||++|||+++.|||+|++|++|.++|+++ +++|+||++++|++|+.||+++++.+++|+|+||
T Consensus       285 SnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~dQ~lvD~~h-kd~RrgRaaa~NIIptsTGAAkAv~kVLP~L~GK  363 (477)
T PRK08289        285 SAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTNDQNLIDNYH-KGDRRGRSAPLNMVITETGAAKAVAKALPELAGK  363 (477)
T ss_pred             ECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccCChHHhhhhh-hcCcccceeeeeeEecCCChhhhhhhcccccCCc
Confidence            999999999999999999999999999999999999999999986 6899999999999999999999999999999999


Q ss_pred             eeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCc-ceeecccCCCcceeEEeCCCcceecC
Q 019445          233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEE-DVVSTDFVGDSRSSIFDAKAGIALSK  310 (341)
Q Consensus       233 l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~-~~vs~d~~~~~~s~~~d~~~~~~~~~  310 (341)
                      ++++++|||+++||+++++++++++++.|||+++|+++++ ++|+++++|+++ |+||+||+|++||+|||+.+|+++ |
T Consensus       364 ltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI~D~~~T~v~-g  442 (477)
T PRK08289        364 LTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGVVDSQATIVN-G  442 (477)
T ss_pred             EEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhheehhccEEc-C
Confidence            9999999999999999999999999999999999999995 899999999999 799999999999999999999998 8


Q ss_pred             CeEEEEEEeCCCcchhhhHHHHHHHHhhcc
Q 019445          311 NFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       311 ~~~k~~~wydne~gy~~r~~d~~~~~~~~~  340 (341)
                      +++|+++||||||||||||+|++.||++..
T Consensus       443 ~~vkv~~WYDNE~GYS~rvvdl~~~~~~~~  472 (477)
T PRK08289        443 NRAVLYVWYDNEFGYSCQVVRVMEQMAGVR  472 (477)
T ss_pred             CEEEEEEEecCchhHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999998753

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=100.00  E-value=1.2e-92  Score=672.49  Aligned_cols=320  Identities=38%  Similarity=0.712  Sum_probs=306.9

Q ss_pred             eEEEEccCHHHHHHHHHHHcCC---CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            8 KIGINGFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p---~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ||||||||+|||.++|+|.+++   ++++++||+. .+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.++++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~-~~~~~~ayll~yDS~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~   77 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNEL-ADQASMAHLLRYDTSHGRFP-GEVKVDGD-CLHVNGDCIRVLHS   77 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecC-CCHHHHHHHHhhCccCCCCC-CcEEEeCC-EEEECCeEEEEEEc
Confidence            6999999999999999998764   6999999996 78899999999999999999 89988777 89999999999999


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-C-CCeeeeccCccccCCCCcEEeCCCCcccee
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-APMFVVGVNEKEYKPELDIVSNASCTTNCL  162 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~L  162 (341)
                      ++|++++|++.++|+||||||.+.+++++++|+++|+++|++|+|++ | .+++|||+|++.|++..+|||||||+||||
T Consensus        78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~l  157 (325)
T TIGR01532        78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCI  157 (325)
T ss_pred             CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHH
Confidence            99999999888999999999999999999999999999999999977 4 458999999999986678999999999999


Q ss_pred             cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (341)
Q Consensus       163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~  242 (341)
                      +|++|+||++|||+++.|||+|++|++|.++|+++ +++|++|.+++|+||+.+++++++++++|+|++|++++++|||+
T Consensus       158 ap~lk~L~~~fgI~~~~~tTvha~t~~q~~vD~~~-~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gkl~~~avRVPv  236 (325)
T TIGR01532       158 VPLIKLLDDAIGIESGTITTIHSAMNDQQVIDAYH-HDLRRTRAASQSIIPVDTKLARGIERLFPEFAGRFEAIAVRVPT  236 (325)
T ss_pred             HHHHHHHHHhcCeeEEEEEEEEhhcCCccccccch-hhccccchHhhCeeeCCccHHHHHHHhCcccCCeEEEEEEEecc
Confidence            99999999999999999999999999999999986 69999999999999999999999999999999999999999999


Q ss_pred             eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE  322 (341)
Q Consensus       243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne  322 (341)
                      ++||+.++++++++++++||++++|+++++++|++||+|+++|+||+||+|++||+|||+.+|++++++++|+++|||||
T Consensus       237 ~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~~k~~~WyDNE  316 (325)
T TIGR01532       237 VNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRLVKLLVWCDNE  316 (325)
T ss_pred             cCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCEEEEEEEeCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHH
Q 019445          323 WGYSSRVID  331 (341)
Q Consensus       323 ~gy~~r~~d  331 (341)
                      |||||||+|
T Consensus       317 ~gys~r~~d  325 (325)
T TIGR01532       317 WGFANRMLD  325 (325)
T ss_pred             ceeeeEccC
Confidence            999999986

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.5e-75  Score=523.67  Aligned_cols=285  Identities=66%  Similarity=1.075  Sum_probs=271.3

Q ss_pred             HHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCCCCCCccCCC
Q 019445           17 IGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTG   96 (341)
Q Consensus        17 iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~~~~~w~~~~   96 (341)
                      |||.++   + ..+++++++||++.++++++|+++|||+||+|+ ++++.++. ++.++|+.+.++++++|..++|...+
T Consensus         1 ig~~~~---~-~~~v~vv~indpfi~~~~~~y~~kydsthG~f~-g~~k~~~~-~~i~~G~~i~~~~~~~p~~i~w~~~g   74 (285)
T KOG0657|consen    1 IGRLVL---Q-RNSVDVVAINDPFIDLNYLAYMLKYDSTHGKFH-GTVKAENF-KLIINGNPITIFQFRDPAKIPWGAKG   74 (285)
T ss_pred             CCcccc---c-cCCcccccccCcccccccccccccccccCCccc-cceeecCC-ceeecCceEEeecccCcccCcccccc
Confidence            355555   1 445999999999999999999999999999999 99998887 78888999999999999999999999


Q ss_pred             ccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecchhHHHhhhccee
Q 019445           97 AEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV  176 (341)
Q Consensus        97 ~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~  176 (341)
                      +|+|+++|+.|.+.+.+..|+++|+|++++|||+.|.|+||+|||+++|.++..+|||++|+|+||+|++|+||++|||.
T Consensus        75 ~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~dapmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~fgI~  154 (285)
T KOG0657|consen   75 ADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSADAPMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNFGIM  154 (285)
T ss_pred             ceeEeeccccccccccccccccccceEEEeccccCCCCcccccccccccccccceeechhhhhccccchhheeccccccc
Confidence            99999999999999999999999999999999999999999999999999877799999999999999999999999999


Q ss_pred             EEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeeeEeeEEEEEEeCC
Q 019445          177 EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEK  256 (341)
Q Consensus       177 ~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~g~~~~l~v~l~~  256 (341)
                      +++|||+|+++++|+.+||||+++||.||.+.|||+|.+||++++++|++|||+||++++++|||++ ++.+++++++++
T Consensus       155 EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vpt~-vsVvdl~~~~~k  233 (285)
T KOG0657|consen  155 EGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP-VSVVDLTCHLEK  233 (285)
T ss_pred             cccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCCcc-eEeeeeeccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             CCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcchhhhHHHHHHHH
Q 019445          257 EATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM  336 (341)
Q Consensus       257 ~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gy~~r~~d~~~~~  336 (341)
                      +.++|+|+++++++++.|++|||  +|+                          +|   ++|||||||||+|++||+.||
T Consensus       234 ~a~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDNE~GYS~rVvDl~~h~  282 (285)
T KOG0657|consen  234 PAKYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDNEFGYSNRVVDLMEHM  282 (285)
T ss_pred             ccchHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeeccccccchHHHHHHHHH
Confidence            99999999999999999999999  777                          45   899999999999999999999


Q ss_pred             hhc
Q 019445          337 AKT  339 (341)
Q Consensus       337 ~~~  339 (341)
                      +++
T Consensus       283 ask  285 (285)
T KOG0657|consen  283 ASK  285 (285)
T ss_pred             hcC
Confidence            874

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=100.00  E-value=7.1e-46  Score=351.81  Aligned_cols=234  Identities=24%  Similarity=0.320  Sum_probs=202.7

Q ss_pred             EEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChh---hhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTD---YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         9 V~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~---~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |||||||+||+.++|.+.++|++||++|+|.  +.+   +++++++||+.|+.+. ..+..+++ .+.++|         
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~--~~~~~a~lA~~lgyds~~~~~~-~~~~~~~~-~l~v~g---------   67 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKT--SPDFEAYRAKELGIPVYAASEE-FIPRFEEA-GIEVAG---------   67 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecC--ChHHHHHHHHHhCCCEEeecCC-cceEeccC-ceEecC---------
Confidence            6999999999999999998899999999995  444   7888889999984332 34444443 444433         


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCCCcEEeCCCCccceec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~La  163 (341)
                      +++++.   .++|+|++|||.+.+++.++.|++.|+|+|++|+|+.|  .++||||+|++.+. ..++|||+|||||||+
T Consensus        68 ~~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~-~~~~vs~aSCtTn~La  143 (333)
T TIGR01546        68 TLEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAAL-GKDYVRVVSCNTTGLV  143 (333)
T ss_pred             CHHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcC-cCceEEecCchHhhHH
Confidence            344442   37999999999999999999999999999999999887  47899999999987 3459999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccc-cC---ChhHHHHHHhhhhcCceeEEEEE
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS-ST---GAAKAVGKVLPALNGKLTGMSFR  239 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~-~~---g~~~~~~~~lpel~~~l~~~~~r  239 (341)
                      |++++|+++|||+++.|||+|+ |++|+        ++|+||  ++||+|+ .+   +.++++.+++|+|+  ++++++|
T Consensus       144 p~~~~L~~~fGI~~~~~Ttvh~-t~dq~--------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP~L~--i~g~Avr  210 (333)
T TIGR01546       144 RTLNAINDYSKVDKVRAVMVRR-AADPN--------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIPNLN--IETMAFV  210 (333)
T ss_pred             HHHHHHHHhcCeEEEEEEEEee-cCChh--------hhccCc--hhceEeCCCCCCCchHHHHHHcCCCCC--ccEEEEE
Confidence            9999999999999999999997 88874        677888  5899999 34   55899999999999  9999999


Q ss_pred             eeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       240 VP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                      ||++++|+.+++++++++++.+||+++|+++++
T Consensus       211 VPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r  243 (333)
T TIGR01546       211 VPTTLMHVHSIMVELKKPVTKDDIIDILENTPR  243 (333)
T ss_pred             eCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence            999999999999999999999999999999765

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=100.00  E-value=1.1e-44  Score=311.28  Aligned_cols=157  Identities=64%  Similarity=0.996  Sum_probs=152.3

Q ss_pred             ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEee
Q 019445          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (341)
Q Consensus       162 Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP  241 (341)
                      |+|++|+|+++|||++++|||+|++|++|+++|+++ +++|+||.+++|++|..+|+++++.+++|||+++++++++|||
T Consensus         1 Lap~~k~l~~~fgI~~~~~Ttih~~t~~Q~~~D~~~-~d~rrgr~a~~niip~~t~aa~av~~VlP~L~gki~g~a~rVP   79 (157)
T PF02800_consen    1 LAPVLKVLDDNFGIEKGRMTTIHAYTDPQKLVDGPH-KDWRRGRAAAQNIIPTSTGAAKAVGKVLPELNGKITGMAVRVP   79 (157)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEESSTTSBSSSS---SSTGTTSBTTTSSEEEEESHHHHHHHHSGGGTTTEEEEEEEES
T ss_pred             CcchhhhhhhhcCEEEEEEEEEeccCCccceeeecc-ccccccccccccccccccccchhhhhhhhhccCcceeeEEeee
Confidence            689999999999999999999999999999999998 7999999999999999999999999999999999999999999


Q ss_pred             eeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEe
Q 019445          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY  319 (341)
Q Consensus       242 ~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wy  319 (341)
                      +++||++++++++++++++|||+++|+++++++++++++|+|+|+||+||+|++||++||..++++++|+++|+++||
T Consensus        80 t~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~~~~vkl~~WY  157 (157)
T PF02800_consen   80 TPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVNGNLVKLFAWY  157 (157)
T ss_dssp             SSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEETTEEEEEEEE
T ss_pred             ecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEECCCEEEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=9.4e-41  Score=320.59  Aligned_cols=239  Identities=21%  Similarity=0.310  Sum_probs=196.6

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            7 IKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +||+|+|+ ||+|++|+|+|.+  ||.+|++++.+....++                          .+.+++..+.+. 
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~--------------------------~l~~~g~~i~v~-   54 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGK--------------------------ELSFKGKELKVE-   54 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCC--------------------------eeeeCCceeEEe-
Confidence            59999999 9999999999998  79899999976522221                          122223333333 


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCC--CcEEeCCCCc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPE--LDIVSNASCT  158 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~--~~iIsnp~C~  158 (341)
                        +++..+|.  ++|+||+|+|++.+++++++++++|+++||+|++++   +.|..+||+|++.++..  .++|||||||
T Consensus        55 --d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~  130 (334)
T PRK14874         55 --DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS  130 (334)
T ss_pred             --eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence              34444563  899999999999999999999999999899998876   37899999999999742  3799999999


Q ss_pred             cceecchhHHHhhhcceeEEEEEEEeeccC------------cceeeeCCC--CCCccccccccccccccc-----CChh
Q 019445          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITA------------TQKTVDGPS--MKDWRGGRAASFNIIPSS-----TGAA  219 (341)
Q Consensus       159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~------------~~~~~d~~s--~~~~~~gr~~~~niiP~~-----~g~~  219 (341)
                      |||++|.+++|+++|+|+.+.++|+|++||            ++..+|+++  .++.+++|++++|++|+.     +|.+
T Consensus       131 ~t~~~l~l~pL~~~~~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~  210 (334)
T PRK14874        131 TIQMVVALKPLHDAAGIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYT  210 (334)
T ss_pred             HHHHHHHHHHHHHhcCceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCc
Confidence            999999999999999999999999999997            345566442  357889999999999997     6666


Q ss_pred             HH-------HHHHh--hhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccC
Q 019445          220 KA-------VGKVL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY  281 (341)
Q Consensus       220 ~~-------~~~~l--pel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~  281 (341)
                      +|       +.+++  |++  +++++++|||++|||+.++|++++++++.+|++++|++   .||++++..
T Consensus       211 ~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~---~~~v~~~~~  276 (334)
T PRK14874        211 KEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAE---APGVVLVDD  276 (334)
T ss_pred             HHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHc---CCCCEEEeC
Confidence            66       34444  555  38999999999999999999999999999999999987   578888864

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-40  Score=318.09  Aligned_cols=261  Identities=27%  Similarity=0.340  Sum_probs=201.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc--cccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d--s~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |+||||+|+|+||+.++|++.++|++||+++++.  +.++.+|++++.  ..|+.++ ..+..       +++..+.+..
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~--~~~~~~~la~~~G~~~~~~~~-~~~~~-------~~~~~i~V~~   70 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT--KPDYEARVAVEKGYPLYVADP-EREKA-------FEEAGIPVAG   70 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC--ChHHHHHHHHhcCCCccccCc-ccccc-------ccCCceEEcC
Confidence            4799999999999999999999999999999986  356777776631  1455544 22210       1122233321


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC-CCCC--eeeeccCccccCCCCcEEeCCCCccc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAP--MFVVGVNEKEYKPELDIVSNASCTTN  160 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~-~d~~--~~V~Gvn~~~~~~~~~iIsnp~C~tt  160 (341)
                        +++++   ..++|+||+|||.+.+.+.++.++++| ++|+++++. ++.|  .+|||+|++.+.. .++|+||||+||
T Consensus        71 --~~~el---~~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~-~~~v~~~sCtT~  143 (341)
T PRK04207         71 --TIEDL---LEKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALG-KDYVRVVSCNTT  143 (341)
T ss_pred             --ChhHh---hccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCC-CCcEEccChHHH
Confidence              23333   137999999999999999999999999 557777775 3433  4899999998873 458999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccccccccccc----CChhHHHHHHhhhhcCceeEE
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS----TGAAKAVGKVLPALNGKLTGM  236 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~----~g~~~~~~~~lpel~~~l~~~  236 (341)
                      ||+|++++|+++|||+++.+||+|++|+       +  .++  .|++..|++|+.    +...+++.+++|+|+  ++++
T Consensus       144 ~l~~~l~~L~~~fgI~~~~vTtv~a~td-------~--~~~--~r~~~~niip~p~~~~~~~g~~v~~vlp~l~--i~~~  210 (341)
T PRK04207        144 GLCRTLCALDRAFGVKKVRATLVRRAAD-------P--KEV--KRGPINAIVPDPVTVPSHHGPDVKTVLPDLD--ITTM  210 (341)
T ss_pred             HHHHHHHHHHHhcCceEEEEEEEEcCCC-------c--chh--hHHHhcCcCCCCCCCCCCchhHHHhhCCCCc--eEEE
Confidence            9999999999999999999999999883       2  133  277888998752    233478999999998  9999


Q ss_pred             EEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcC----cccccccCCCcceeecccCCCcce
Q 019445          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG----KLKGILGYTEEDVVSTDFVGDSRS  297 (341)
Q Consensus       237 ~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~----~~~~il~~~~~~~vs~d~~~~~~s  297 (341)
                      |+|||+++||+.+++++++++++.||++++|+++++-    .-.++.+ +++++-..+-.|.|+.
T Consensus       211 avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~i~~~~~~~~~~s-~~~~~~~~~~~~rp~~  274 (341)
T PRK04207        211 AVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPRILLVRASDGIDS-TAELIEYARDLGRPRG  274 (341)
T ss_pred             EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCCCEeeccccCCCC-hHHHhHHHHHcCCCcc
Confidence            9999999999999999999999999999999998752    2235555 6666655555666654

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=100.00  E-value=4.4e-39  Score=309.11  Aligned_cols=240  Identities=21%  Similarity=0.280  Sum_probs=195.6

Q ss_pred             eEEEEcc-CHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            8 KIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ||+|+|+ ||+|++|+|+|.+  ||.++++.+.+....++                          .+.+.+..+. +.+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~--------------------------~~~~~~~~~~-~~~   53 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGR--------------------------KVTFKGKELE-VNE   53 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCC--------------------------eeeeCCeeEE-EEe
Confidence            6899999 9999999999998  79899888866522221                          1222222222 222


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC--CCcEEeCCCCcc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP--ELDIVSNASCTT  159 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~--~~~iIsnp~C~t  159 (341)
                      .++  ..|  .++|+||+|+|++.+++++++++++|+++||+|++++   +.|.++||+|++.+++  ..++||||||||
T Consensus        54 ~~~--~~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~  129 (339)
T TIGR01296        54 AKI--ESF--EGIDIALFSAGGSVSKEFAPKAAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST  129 (339)
T ss_pred             CCh--HHh--cCCCEEEECCCHHHHHHHHHHHHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence            222  223  4899999999999999999999999998888888765   4799999999998874  234999999999


Q ss_pred             ceecchhHHHhhhcceeEEEEEEEeeccCcc------------eeeeCCCCCC-------ccccccccccccccc-----
Q 019445          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQ------------KTVDGPSMKD-------WRGGRAASFNIIPSS-----  215 (341)
Q Consensus       160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~------------~~~d~~s~~~-------~~~gr~~~~niiP~~-----  215 (341)
                      ||++|.+++|+++|+|+++.++|+|++||.+            .+.+++....       .+++|++++|+||+.     
T Consensus       130 t~~~l~l~pL~~~~~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~  209 (339)
T TIGR01296       130 IQMVVVLKPLHDEAKIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFND  209 (339)
T ss_pred             HHHHHHHHHHHHhcCccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCccc
Confidence            9999999999999999999999999999963            3455543222       678999999999995     


Q ss_pred             CChhHHHHHHhhhhc---C----ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccC
Q 019445          216 TGAAKAVGKVLPALN---G----KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY  281 (341)
Q Consensus       216 ~g~~~~~~~~lpel~---~----~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~  281 (341)
                      ++.++|+.|+.+|++   +    +++++++|||++|||+.++|++++++++.+|++++|++   .||++++.-
T Consensus       210 ~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~---~~~v~v~~~  279 (339)
T TIGR01296       210 DGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKN---APGVVLIDD  279 (339)
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhc---CCCCEEeCC
Confidence            578889899999987   2    58999999999999999999999999999999999984   488888754

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=100.00  E-value=7.8e-40  Score=278.55  Aligned_cols=149  Identities=56%  Similarity=0.988  Sum_probs=139.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      +||||||||||||.++|+++.+|++||++|||...+.++++|||+|||+||+|+ +++..+++ .|.++|+.+.++++.+
T Consensus         1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~-~~v~~~~~-~l~v~G~~I~~~~~~d   78 (151)
T PF00044_consen    1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFP-GDVEVDDD-GLIVNGKKIKVTEERD   78 (151)
T ss_dssp             EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGS-SHEEEETT-EEEETTEEEEEEHTSS
T ss_pred             CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcccccccee-cccccccc-eeEeecccccchhhhh
Confidence            699999999999999999999999999999999669999999999999999999 89988888 8999999999999999


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCCCcEEeCCCC
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASC  157 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~~~iIsnp~C  157 (341)
                      |+++||+..++|+|+||||.|.+++.++.|+++|+|+|++|+|++|  +|++|||+|++.|+++.++|||+||
T Consensus        79 p~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC  151 (151)
T PF00044_consen   79 PEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC  151 (151)
T ss_dssp             GGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred             hcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence            9999999999999999999999999999999999999999999986  8999999999999976699999999

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=8.9e-40  Score=306.26  Aligned_cols=273  Identities=21%  Similarity=0.219  Sum_probs=196.0

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||+|+|+ ||+|.||+|+|.+||++|+..+.++...++.+      ...|+++. +.+      .+        -++.
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~------~~~~p~l~-g~~------~l--------~~~~   60 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPV------SDVHPNLR-GLV------DL--------PFQT   60 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCch------HHhCcccc-ccc------cc--------cccc
Confidence            689999999 99999999999999999988887763333322      34566655 211      01        1222


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC------------------C-CCeeeeccC---c
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK------------------D-APMFVVGVN---E  142 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~------------------d-~~~~V~Gvn---~  142 (341)
                      .+++++.  ..++|+||+||||++|++.++++++.|++++|+|+|++                  + ...+|||++   +
T Consensus        61 ~~~~~~~--~~~~DvvFlalPhg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~  138 (349)
T COG0002          61 IDPEKIE--LDECDVVFLALPHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHR  138 (349)
T ss_pred             CChhhhh--cccCCEEEEecCchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCH
Confidence            2444431  34699999999999999999999999999999999976                  1 248999997   6


Q ss_pred             cccCCCCcEEeCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccccc---------cccc
Q 019445          143 KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASF---------NIIP  213 (341)
Q Consensus       143 ~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~---------niiP  213 (341)
                      ++++ ++++|||||||+||....++||-+.     +++..     ....++|++|| .+++||++..         |+.|
T Consensus       139 e~i~-~A~lIAnPGCypTa~iLal~PL~~~-----~ll~~-----~~~~ivdakSG-~SGaGrk~s~~~~~~e~~~~~~~  206 (349)
T COG0002         139 EKIR-GAKLIANPGCYPTAAILALAPLVKA-----GLLDP-----DSPPIVDAKSG-VSGAGRKASVKNHFPEVNDSLRP  206 (349)
T ss_pred             HHHh-cCCEeeCCCchHHHHHHHHHHHHHc-----CCcCC-----CCceEEEEeEe-cCcCCCCccccccchhhcccccc
Confidence            7787 7999999999999944444444322     33211     01236788887 8888988744         4455


Q ss_pred             ccCChhHHHHHHhhhhcC----------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCC
Q 019445          214 SSTGAAKAVGKVLPALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYT  282 (341)
Q Consensus       214 ~~~g~~~~~~~~lpel~~----------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~  282 (341)
                      |...    -|||.||+.+          .+.++++.+|+.||+++++++.+++.++.+||+++|+++|+ +||++|....
T Consensus       207 Y~~~----~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~  282 (349)
T COG0002         207 YGLT----GHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAGEPFVRVVPEG  282 (349)
T ss_pred             cccc----ccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCCCCeEEEecCC
Confidence            5432    2777777665          25689999999999999999999999999999999999999 6999998743


Q ss_pred             CcceeecccCCCcceeEEeCCCcceecC--CeEEEEEEeCCCc
Q 019445          283 EEDVVSTDFVGDSRSSIFDAKAGIALSK--NFVKLVSWYDNEW  323 (341)
Q Consensus       283 ~~~~vs~d~~~~~~s~~~d~~~~~~~~~--~~~k~~~wydne~  323 (341)
                      .-|-+. +.+|..+--|   +  ...++  +.+-+++=.||=.
T Consensus       283 ~~P~~k-~V~GsN~cdI---g--f~~d~~~~rvvvvsaIDNL~  319 (349)
T COG0002         283 GYPDTK-AVAGSNFCDI---G--FAVDERTGRVVVVSAIDNLV  319 (349)
T ss_pred             CCCChh-hhcCCcceEE---E--EEEcCCCCEEEEEEEecccc
Confidence            222221 2355443323   3  22332  5778888888853

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-38  Score=300.68  Aligned_cols=240  Identities=20%  Similarity=0.256  Sum_probs=191.9

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      +++||||+|+ |++|++++|+|.+  ||.++|+.+.+.+..++                          .+.++++.+.+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~--------------------------~~~~~~~~~~v   56 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGE--------------------------TLRFGGKSVTV   56 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCc--------------------------eEEECCcceEE
Confidence            4679999999 9999999999999  89999999977532222                          22233333333


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCc---cccCCCCcEEeCC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNE---KEYKPELDIVSNA  155 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~---~~~~~~~~iIsnp  155 (341)
                      .   ++++++|.  ++|+||+|+|++.++++++++.++|+++||+|++++   +.|..++++|+   +.++ +.++|+||
T Consensus        57 ~---~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~-~~~iIAnP  130 (336)
T PRK08040         57 Q---DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR-NRNIIAVA  130 (336)
T ss_pred             E---eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc-cCCEEECC
Confidence            2   44556664  899999999999999999999999999999999987   48999999998   5554 57899999


Q ss_pred             CCccceecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccccccccccccccCC---hhH
Q 019445          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSSTG---AAK  220 (341)
Q Consensus       156 ~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~gr~~~~niiP~~~g---~~~  220 (341)
                      ||+||+++..|+||+++++|++..+++++++||.++            +++|.+.....+.++.++|++||..+   ...
T Consensus       131 gC~~t~~~laL~PL~~~~~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~~~g~~~  210 (336)
T PRK08040        131 DSLTSQLLTAIKPLIDQAGLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPDSEGSVR  210 (336)
T ss_pred             CHHHHHHHHHHHHHHHhCCCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCCcCCcch
Confidence            999999999999999999999999999999999753            22332222345666789999999432   222


Q ss_pred             HHHHH-hhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCccccccc
Q 019445          221 AVGKV-LPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILG  280 (341)
Q Consensus       221 ~~~~~-lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~  280 (341)
                      + |++ .||+++       +++++++|||++|||+.++|++++++++.++++++|++   .||++++.
T Consensus       211 ~-erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~---~p~v~v~~  274 (336)
T PRK08040        211 E-ERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQ---GEDIVLSE  274 (336)
T ss_pred             H-hhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhc---CCCEEEEC
Confidence            2 344 666654       26789999999999999999999999999999999987   58888875

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=3e-37  Score=295.20  Aligned_cols=297  Identities=14%  Similarity=0.148  Sum_probs=215.7

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHH--cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCE
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~--~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      |+.  |+||+|+|+ |++|++++|+|.  +||.++++.+.+....++.                          +.+.++
T Consensus         1 m~~--~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~--------------------------l~~~~~   52 (336)
T PRK05671          1 MSQ--PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHS--------------------------VPFAGK   52 (336)
T ss_pred             CCC--CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCe--------------------------eccCCc
Confidence            543  479999999 999999999999  7899999999876322221                          111122


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC--CCCeeeeccCccccCC--CCcEEe
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEKEYKP--ELDIVS  153 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~--d~~~~V~Gvn~~~~~~--~~~iIs  153 (341)
                      ... +.+  ++..+|  .++|+||+|+|++.+.+++++++++|+++||+|++++  +.|..++++|++.++.  +.++||
T Consensus        53 ~l~-~~~--~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIA  127 (336)
T PRK05671         53 NLR-VRE--VDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVS  127 (336)
T ss_pred             ceE-Eee--CChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHccccCCCEEE
Confidence            122 222  222234  3899999999999999999999999999999999987  6899999999998873  278999


Q ss_pred             CCCCccceecchhHHHhhhcceeEEEEEEEeeccCccee------------eeCCCCCCcccccccccccccccC-----
Q 019445          154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGPSMKDWRGGRAASFNIIPSST-----  216 (341)
Q Consensus       154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~------------~d~~s~~~~~~gr~~~~niiP~~~-----  216 (341)
                      ||||+||+++..|++|++.+++++..+++++++||.++-            .++.......+++++++|++|+..     
T Consensus       128 nPgC~~t~~~laL~PL~~~~~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~  207 (336)
T PRK05671        128 SPSASAVALAVALAPLKGLLDIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQ  207 (336)
T ss_pred             CCCcHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccC
Confidence            999999999999999998899999999999999997531            111111233456788899999874     


Q ss_pred             ChhHHHHHHhhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeec
Q 019445          217 GAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVST  289 (341)
Q Consensus       217 g~~~~~~~~lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~  289 (341)
                      |..+++.||.||+++       +++++++|||++|||+.++|++++++++.++++++|+   +.||+.++.-.+-|-.-.
T Consensus       208 gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~---~~~~v~v~~~~~~p~~~~  284 (336)
T PRK05671        208 GHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALE---AAPGIELVEAGDYPTPVG  284 (336)
T ss_pred             CccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHh---CCCCeEEeCCCCCCCChH
Confidence            556677888888876       2678999999999999999999999999999999988   458888875322232212


Q ss_pred             ccCCCcceeEEeCCCcce--ecCCeEEEEEEeCCCc-chhhhHHHHHHHH
Q 019445          290 DFVGDSRSSIFDAKAGIA--LSKNFVKLVSWYDNEW-GYSSRVIDLIVHM  336 (341)
Q Consensus       290 d~~~~~~s~~~d~~~~~~--~~~~~~k~~~wydne~-gy~~r~~d~~~~~  336 (341)
                      |..|..+-.|   +....  -.++.+.+.+=-||=. |=|-.-+-.++.+
T Consensus       285 ~v~g~~~~~v---g~~~~~~~~~~~l~~~~~~DNL~kGAA~~AVq~~~~l  331 (336)
T PRK05671        285 DAVGQDVVYV---GRVRAGVDDPCQLNLWLTSDNVRKGAALNAVQVAELL  331 (336)
T ss_pred             HcCCCCeEEE---EEEEecCCCCCEEEEEEEehhHHHHHHHHHHHHHHHH
Confidence            4455543221   11100  1234456666678843 4444444444433

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=6.5e-37  Score=292.42  Aligned_cols=239  Identities=17%  Similarity=0.278  Sum_probs=187.1

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcE---EEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECC
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE   76 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~e---lv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g   76 (341)
                      |+.. .+||||+|+ |++|++++|+|.+||+|+   |..+.+....++                          .+.+.+
T Consensus         1 ~~~~-~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk--------------------------~~~~~~   53 (347)
T PRK06728          1 MSEK-GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGK--------------------------TVQFKG   53 (347)
T ss_pred             CCCC-CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCC--------------------------CeeeCC
Confidence            6653 479999999 999999999999999998   556655422221                          233333


Q ss_pred             EEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCCCcEEe
Q 019445           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPELDIVS  153 (341)
Q Consensus        77 ~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~~~iIs  153 (341)
                      +.+.+ ++.+++.  |  .++|+||+|+|++.++++++++.++|+++||+|++++   +.|..++++|+++++...++|+
T Consensus        54 ~~l~v-~~~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIa  128 (347)
T PRK06728         54 REIII-QEAKINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIA  128 (347)
T ss_pred             cceEE-EeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEE
Confidence            33333 2334433  4  3899999999999999999999999999999999987   5899999999999884337999


Q ss_pred             CCCCccceecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccc-------cccccccccc
Q 019445          154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGG-------RAASFNIIPS  214 (341)
Q Consensus       154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~g-------r~~~~niiP~  214 (341)
                      ||||+|++++..|++|+++++|++..++|++++||.++            ++++.......++       +.+++|++|+
T Consensus       129 nPnC~tt~~~laL~PL~~~~~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~  208 (347)
T PRK06728        129 VPNCSALQMVTALQPIRKVFGLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQ  208 (347)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCc
Confidence            99999999999999999999999999999999999642            2333222233345       8899999999


Q ss_pred             c-----CChhHHHHHHhhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhh
Q 019445          215 S-----TGAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEES  271 (341)
Q Consensus       215 ~-----~g~~~~~~~~lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~  271 (341)
                      .     .|..+|+.|+.-|.++       +++.||+|||+++||...++++++++++.++++++|+++.
T Consensus       209 i~~~~~~g~t~EE~K~~~E~~KIL~~~~l~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~  277 (347)
T PRK06728        209 VDIFTDNDFTFEEVKMIQETKKILEDPNLKMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP  277 (347)
T ss_pred             CCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCC
Confidence            8     3444444444333322       3789999999999999999999999999999999998764

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=9.2e-36  Score=287.73  Aligned_cols=246  Identities=20%  Similarity=0.235  Sum_probs=186.6

Q ss_pred             CCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe-eCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         4 ~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i-~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      |||+||+|+|+ |++|++++|+|.+||++||+.+ .+.+..++.+..++.+ ..+|.+. +        .+    ..+. 
T Consensus         1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~-~~~~~~~-~--------~~----~~~~-   65 (349)
T PRK08664          1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRW-QLDGPIP-E--------EV----ADME-   65 (349)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccc-ccccccc-c--------cc----cceE-
Confidence            35789999999 9999999999999999999999 5542233222111000 0000111 0        00    1111 


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccC----------CC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYK----------PE  148 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~----------~~  148 (341)
                      +...+++.  |  .++|+||+|+|++.+.+.++++.++|+++||+|++++   +.|..++++|++.|.          ++
T Consensus        66 v~~~~~~~--~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~  141 (349)
T PRK08664         66 VVSTDPEA--V--DDVDIVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWD  141 (349)
T ss_pred             EEeCCHHH--h--cCCCEEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCC
Confidence            22224443  2  3799999999999999999988899999999999876   367888999965442          23


Q ss_pred             CcEEeCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhh
Q 019445          149 LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPA  228 (341)
Q Consensus       149 ~~iIsnp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpe  228 (341)
                      .++||||||||||+++.+++|++ |||++..++++|++||.++     ++.   ..+.+++|++||..+.   +|||.||
T Consensus       142 ~~iVa~p~C~~t~~~l~l~pL~~-~gl~~i~v~~~~g~SgaG~-----~~~---~~~~~~~N~~p~~~~~---ehrh~~E  209 (349)
T PRK08664        142 GFIVTNPNCSTIGLVLALKPLMD-FGIERVHVTTMQAISGAGY-----PGV---PSMDIVDNVIPYIGGE---EEKIEKE  209 (349)
T ss_pred             ceEEEccCHHHHHHHHHHHHHHH-CCCcEEEEEEEeccccCCc-----ccc---hhhhhhcCcccccCch---hhhhhHH
Confidence            57999999999999999999999 9999999999999999854     111   1456889999999873   3444444


Q ss_pred             h---------------cCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc----------C-ccccccc
Q 019445          229 L---------------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE----------G-KLKGILG  280 (341)
Q Consensus       229 l---------------~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~----------~-~~~~il~  280 (341)
                      +               +.+++++++|||++|||+.++|++++++++.+|++++|+++|+          + ||++++.
T Consensus       210 i~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fv~~~~  287 (349)
T PRK08664        210 TLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKGLPQELGLPSAPKKPIILFE  287 (349)
T ss_pred             HHHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccCccccccCCCCCCceEEEeC
Confidence            4               3458899999999999999999999999999999999999998          4 8888874

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=100.00  E-value=3e-36  Score=284.44  Aligned_cols=267  Identities=14%  Similarity=0.106  Sum_probs=187.8

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||+|+ ||+|++|+|+|.+||+++++.+.+..  ..                          .+         .  
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~--~~--------------------------~~---------~--   42 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK--RK--------------------------DA---------A--   42 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC--CC--------------------------cc---------c--
Confidence            689999999 99999999999999999999997541  00                          00         0  


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeecc---Cc---cccCCCCcEEeCCCCc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGV---NE---KEYKPELDIVSNASCT  158 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gv---n~---~~~~~~~~iIsnp~C~  158 (341)
                       +.+ ..|  .++|+||+|+|++.++++++++.++|+++||+|++++-.+.++||+   |+   +.++ +.++||||||+
T Consensus        43 -~~~-~~~--~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~-~~~~IanPgC~  117 (313)
T PRK11863         43 -ARR-ELL--NAADVAILCLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA-AAKRVANPGCY  117 (313)
T ss_pred             -Cch-hhh--cCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh-cCCeEEcCCcH
Confidence             111 123  3789999999999999999999999999999999987334455555   42   3455 68999999999


Q ss_pred             cceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccc--ccccccccccccCChhHHHHHHhhhhcCc----
Q 019445          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRG--GRAASFNIIPSSTGAAKAVGKVLPALNGK----  232 (341)
Q Consensus       159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~--gr~~~~niiP~~~g~~~~~~~~lpel~~~----  232 (341)
                      +|+++..|+||+++..+++...++++++||...  -|+.+...-.  --....|++||..+.   .|||.||+++.    
T Consensus       118 ~Ta~~laL~PL~~~~li~~~~~i~i~a~SG~SG--AG~~~~~~~~~~~~~~~~n~~~Y~~~~---~HrH~pEi~~~l~~~  192 (313)
T PRK11863        118 PTGAIALLRPLVDAGLLPADYPVSINAVSGYSG--GGKAMIAAYEAAPDGKAPAFRLYGLGL---AHKHLPEMQAHAGLA  192 (313)
T ss_pred             HHHHHHHHHHHHHcCCcccCceEEEEEcccccc--CCccchHHHhhhhhhhccCeeeccCCc---CCcchHHHHHHhccc
Confidence            999999999998875555444577888764211  0111100000  011355888998761   27788887763    


Q ss_pred             --eeEEEEEeeeeeEeeEEEEEEe---CCCCCHHHHHHHHHHhhc-CcccccccCCC-cc--eeecccCCCcceeEEeCC
Q 019445          233 --LTGMSFRVPTVDVSVVDLTVRL---EKEATYEEIKNAIKEESE-GKLKGILGYTE-ED--VVSTDFVGDSRSSIFDAK  303 (341)
Q Consensus       233 --l~~~~~rVP~~~g~~~~l~v~l---~~~~~~~ei~~~~~~a~~-~~~~~il~~~~-~~--~vs~d~~~~~~s~~~d~~  303 (341)
                        +.++++.+|+.||+++++|+++   +++++.+|++++|+++|+ +||++++...+ .|  .-....+..+..|-+  .
T Consensus       193 ~~~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~~epfV~v~~~~~~~~~~~p~~~~v~gtn~~~i--~  270 (313)
T PRK11863        193 RRPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYAGEAFVRVAPLDESAALDFLDPEALNGTNRLEL--F  270 (313)
T ss_pred             cCcEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcCCCCeEEEecCCcccccCCCCHHHhCCCCeEEE--E
Confidence              4579999999999999999997   888999999999999998 69999986543 22  222222222222221  1


Q ss_pred             CcceecCCeEEEEEEeCCCc
Q 019445          304 AGIALSKNFVKLVSWYDNEW  323 (341)
Q Consensus       304 ~~~~~~~~~~k~~~wydne~  323 (341)
                      ....-.++.+++++=.||=.
T Consensus       271 v~~~~~~~~~~v~s~iDNL~  290 (313)
T PRK11863        271 VFGNEDHGQAVLVARLDNLG  290 (313)
T ss_pred             EEEcCCCCEEEEEEEccccc
Confidence            11111245688889999953

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=100.00  E-value=8.5e-36  Score=253.97  Aligned_cols=148  Identities=54%  Similarity=0.921  Sum_probs=139.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      +||||+|+|++|+.++|.+.+++++++++++++ .++++++|||+|||+||+|+ .++..+++ .|.++|+.+.++++.+
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~-~~~~~~a~ll~~Ds~hg~~~-~~v~~~~~-~l~i~g~~i~~~~~~~   77 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL-TDPETLAHLLKYDSVHGRFP-GEVEVDED-GLIVNGKKIKVLAERD   77 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC-CCHHHHHHHhcccCCCCCCC-CcEEEeCC-EEEECCEEEEEEecCC
Confidence            489999999999999999999999999999997 79999999999999999999 88888777 8999999999999999


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCC
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASC  157 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C  157 (341)
                      |++++|++.++|+|+||||.|.+++.++.|+++|+|+|++|+|++| .++||||+|+++|+++.++|||+||
T Consensus        78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC  149 (149)
T smart00846       78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC  149 (149)
T ss_pred             hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence            9999999999999999999999999999999999999999999987 5699999999999866679999999

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=100.00  E-value=3.2e-36  Score=282.44  Aligned_cols=225  Identities=13%  Similarity=0.134  Sum_probs=172.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      .||+|+|+ ||+|.||+|+|.+||++|++.+.+.+.                 |.                       ..
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----------------~~-----------------------~~   41 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----------------KD-----------------------AA   41 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----------------cC-----------------------cC
Confidence            58999999 999999999999999999999976510                 11                       00


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccC------ccccCCCCcEEeCCCCcc
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVN------EKEYKPELDIVSNASCTT  159 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn------~~~~~~~~~iIsnp~C~t  159 (341)
                      +++++   ..++|+||+|+|++.++++++++.++|+++||+|++++-.+.++||++      +++++ +.++||||||++
T Consensus        42 ~~~~~---~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~-~a~lIAnPgC~a  117 (310)
T TIGR01851        42 ERAKL---LNAADVAILCLPDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR-NSKRIANPGCYP  117 (310)
T ss_pred             CHhHh---hcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc-cCCEEECCCCHH
Confidence            11222   137899999999999999999998999999999999874445555554      34455 689999999999


Q ss_pred             ceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCC-Ccc-ccc--ccccccccccCC-hhHHHHHHhhhhcCc--
Q 019445          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWR-GGR--AASFNIIPSSTG-AAKAVGKVLPALNGK--  232 (341)
Q Consensus       160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~-~~~-~gr--~~~~niiP~~~g-~~~~~~~~lpel~~~--  232 (341)
                      |+++..|+||+++..|++...++++++||...  -|+.+. ... ..+  ....|+.||..+ .    |||+||+++.  
T Consensus       118 Ta~~LaL~PL~~~~li~~~~~~~~~a~SG~SG--AGr~~~~~l~~q~~~~e~~~~~~~Y~~~~~----HrH~pEi~q~l~  191 (310)
T TIGR01851       118 TGFIALMRPLVEAGILPADFPITINAVSGYSG--GGKAMIADYEQGSADNPSLQPFRIYGLALT----HKHLPEMRVHSG  191 (310)
T ss_pred             HHHHHHHHHHHHcCCccccceEEEEeccccCc--cChhhhHHhhhcccchhhccCceeccCCCC----CCcHHHHHHHhC
Confidence            99999999999886665554688888876211  011110 000 001  123467788755 3    8888888873  


Q ss_pred             ----eeEEEEEeeeeeEeeEEEEEEe---CCCCCHHHHHHHHHHhhc-CcccccccC
Q 019445          233 ----LTGMSFRVPTVDVSVVDLTVRL---EKEATYEEIKNAIKEESE-GKLKGILGY  281 (341)
Q Consensus       233 ----l~~~~~rVP~~~g~~~~l~v~l---~~~~~~~ei~~~~~~a~~-~~~~~il~~  281 (341)
                          +.++++.+|++||+++|+|+++   +++++.+|++++|+++|+ +||++|+..
T Consensus       192 ~~~~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y~~epfVrv~~~  248 (310)
T TIGR01851       192 LALPPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGEQFVRVAPL  248 (310)
T ss_pred             CCCCEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHHCCCCcEEEecC
Confidence                6789999999999999999999   888999999999999998 699999844

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=100.00  E-value=5.4e-35  Score=281.54  Aligned_cols=240  Identities=19%  Similarity=0.221  Sum_probs=181.1

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCC-CChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPF-ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~-~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +||||+|+ |++|++|+|+|.+||+++|+++.+.. ..++...      ..++.+.     . +  .+...-... .++.
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~------~~~~~~~-----~-~--~~~~~~~~~-~~~~   65 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYG------EAVKWIE-----P-G--DMPEYVRDL-PIVE   65 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcch------hhccccc-----c-C--CCcccccee-EEEe
Confidence            48999999 99999999999999999999995431 1122211      1111100     0 0  000000111 2222


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC---------CCcEE
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP---------ELDIV  152 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~---------~~~iI  152 (341)
                      .+++  .|  .++|+||+|+|++.+.+.++++.++|+++||+|++++   +.|.+++++|++.|..         +.++|
T Consensus        66 ~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iV  141 (341)
T TIGR00978        66 PEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIV  141 (341)
T ss_pred             CCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEE
Confidence            2332  23  4899999999999999999999999999999999986   4789999999654431         35799


Q ss_pred             eCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCCh-h---HHHHHHhhh
Q 019445          153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA-A---KAVGKVLPA  228 (341)
Q Consensus       153 snp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~-~---~~~~~~lpe  228 (341)
                      |||||||||+++.+++|+++++|++..++++|++||.++.     +..   .+.+++|++||..+. .   .|+.++++.
T Consensus       142 anPgC~~t~~~lal~pL~~~~~i~~v~v~t~~gvSgaG~~-----~~~---~~~~~~Ni~py~~~~ehrh~~Ei~~il~~  213 (341)
T TIGR00978       142 TNPNCTTAGLTLALKPLIDAFGIKKVHVTTMQAVSGAGYP-----GVP---SMDILDNIIPHIGGEEEKIERETRKILGK  213 (341)
T ss_pred             eCCCcHHHHHHHHHHHHHHhCCCcEEEEEEEEccCCCCCC-----CCc---cchhhCCeEecCcHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999998652     111   245788999999774 2   245555554


Q ss_pred             hcC--------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcC
Q 019445          229 LNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG  273 (341)
Q Consensus       229 l~~--------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~  273 (341)
                      +.+        +++++++|||++|||++++|++++++++.++++++|+++|+.
T Consensus       214 ~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~  266 (341)
T TIGR00978       214 LENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGL  266 (341)
T ss_pred             cccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCc
Confidence            432        377899999999999999999999999999999999999874

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-34  Score=270.93  Aligned_cols=235  Identities=19%  Similarity=0.244  Sum_probs=185.4

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .+++||| |+ |.+|++++++|.++. |   .+.+.        ++|  ++.   +.      +.++++.++|+.+.+. 
T Consensus         2 ~~~~iAi-GATg~VG~~~l~~Leer~-f---pv~~l--------~l~--~s~---~~------s~gk~i~f~g~~~~V~-   56 (322)
T PRK06901          2 ATLNIAI-AAEFELSEKLLEALEQSD-L---EIEQI--------SIV--EIE---PF------GEEQGIRFNNKAVEQI-   56 (322)
T ss_pred             CcceEEE-ecCcHHHHHHHHHHHhcC-C---chhhe--------eec--ccc---cc------cCCCEEEECCEEEEEE-
Confidence            3568999 99 999999999999875 5   22211        111  110   00      0112677888887766 


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC--CCcEEeCCCCc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP--ELDIVSNASCT  158 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~--~~~iIsnp~C~  158 (341)
                        +.++.+|+  ++|++|+ +|...++++++.+.++|+.+||.|..++   |+|++|+++|++.+..  ...||+||+|+
T Consensus        57 --~l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNCs  131 (322)
T PRK06901         57 --APEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQ  131 (322)
T ss_pred             --ECCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcHH
Confidence              44555564  8999999 8999999999999999996665555544   6999999999888874  25799999999


Q ss_pred             cceecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccccccccccccccC-ChhHHHHHH
Q 019445          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSST-GAAKAVGKV  225 (341)
Q Consensus       159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~gr~~~~niiP~~~-g~~~~~~~~  225 (341)
                      |.++++.|++||+.|||++..++|+||+||.++            ++++... .. ..+++++|++|+.. +-..|.+|+
T Consensus       132 Ti~l~~aL~pL~~~~~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~-~~-~~~~iAFNviP~ig~~m~~EtrKI  209 (322)
T PRK06901        132 VSQLALALAPFLQEQPLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPL-DE-EEQRLAFDVFPANAQNLELQLQKI  209 (322)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCC-CC-CceeeeccccccCCccHHHHHHHH
Confidence            999999999999999999999999999999641            3333322 11 23889999999994 556788999


Q ss_pred             hhhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          226 LPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       226 lpel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                      +|++ .+++.||+|||+++||...++++++++++.++++++|+++..
T Consensus       210 l~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~g  255 (322)
T PRK06901        210 FPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNNL  255 (322)
T ss_pred             hCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence            9888 248999999999999999999999999999999999998764

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=100.00  E-value=9.8e-35  Score=278.94  Aligned_cols=234  Identities=15%  Similarity=0.163  Sum_probs=178.4

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcE---EEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~e---lv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +||||+|+ |++|++++|++++||+|+   ++...+.+..++           ...               ++|+...++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~-----------~~~---------------f~g~~~~v~   55 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGA-----------APS---------------FGGKEGTLQ   55 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCc-----------ccc---------------cCCCcceEE
Confidence            69999999 999999999999999887   666444311111           011               223333344


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc--EEEecCCCC---CCCeeeeccCccccCCC---C-cEEe
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAPSK---DAPMFVVGVNEKEYKPE---L-DIVS  153 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k--~V~lSa~~~---d~~~~V~Gvn~~~~~~~---~-~iIs  153 (341)
                      ...+++  .|  .++|+||+|+|+..++++++++.++|++  +||+|++++   |.|.+++++|++.+...   . ++|+
T Consensus        56 ~~~~~~--~~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIa  131 (369)
T PRK06598         56 DAFDID--AL--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFV  131 (369)
T ss_pred             ecCChh--Hh--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEE
Confidence            222232  24  3899999999999999999999999955  788888776   59999999999888631   1 5899


Q ss_pred             CCCCccceecchhHHHhhhcceeEEEEEEEeeccCccee------------ee-------------------------CC
Q 019445          154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VD-------------------------GP  196 (341)
Q Consensus       154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~------------~d-------------------------~~  196 (341)
                      ||||+|++++..|++|+++++|++..++|++++||.++-            ++                         +.
T Consensus       132 nPnC~tt~~~laL~PL~~~~~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (369)
T PRK06598        132 GGNCTVSLMLMALGGLFKNDLVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSG  211 (369)
T ss_pred             cCChHHHHHHHHHHHHHhcCCceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccC
Confidence            999999999999999999999999999999999997531            11                         22


Q ss_pred             CCCCccccccccccccccc-----CChhHHHHHHhhhhcC---------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHH
Q 019445          197 SMKDWRGGRAASFNIIPSS-----TGAAKAVGKVLPALNG---------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEE  262 (341)
Q Consensus       197 s~~~~~~gr~~~~niiP~~-----~g~~~~~~~~lpel~~---------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~e  262 (341)
                      ......+++.+++|++|+.     .|.++|+.|+.-|.++         ++++||+|||+++||...++++++++++.++
T Consensus       212 ~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l~vs~tcVRVPV~~gHs~sv~ve~~~~~~~~~  291 (369)
T PRK06598        212 DLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPIPVDGLCVRVGAMRCHSQALTIKLKKDVPLAE  291 (369)
T ss_pred             CCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEEcceeccEEEEEEEEECCCCCHHH
Confidence            2223445678999999997     3544554333333221         3789999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 019445          263 IKNAIKEE  270 (341)
Q Consensus       263 i~~~~~~a  270 (341)
                      ++++++++
T Consensus       292 i~~~L~~~  299 (369)
T PRK06598        292 IEEILAAH  299 (369)
T ss_pred             HHHHHHhc
Confidence            99999985

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=100.00  E-value=2.3e-34  Score=277.37  Aligned_cols=295  Identities=19%  Similarity=0.195  Sum_probs=199.2

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC-CCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND-PFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~-~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +||||+|+ |++|++++|+|.+||+++++++.+ ....++.+      ...|+.+. +..             .. .+..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~------~~~~~~l~-~~~-------------~~-~~~~   59 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPV------SEVHPHLR-GLV-------------DL-NLEP   59 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCCh------HHhCcccc-ccC-------------Cc-eeec
Confidence            48999999 999999999999999999998743 32122211      12233222 100             01 1111


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CCC------------------eeeecc---Cc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAP------------------MFVVGV---NE  142 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~~------------------~~V~Gv---n~  142 (341)
                      .++++  |. .++|+||+|+|++.+++.+++++++|+++||+|++++ +.+                  .++||+   |+
T Consensus        60 ~~~~~--~~-~~~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~  136 (346)
T TIGR01850        60 IDEEE--IA-EDADVVFLALPHGVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHR  136 (346)
T ss_pred             CCHHH--hh-cCCCEEEECCCchHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCH
Confidence            12222  21 3799999999999999999999999999999999986 211                  355655   57


Q ss_pred             cccCCCCcEEeCCCCccceecchhHHHhhhccee--EEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChh-
Q 019445          143 KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA-  219 (341)
Q Consensus       143 ~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~--~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~-  219 (341)
                      ++++ +.++||||||++|++...|++|++++.|+  +..+++++++||.++-........     ....|++||..+.. 
T Consensus       137 ~~i~-~~~iianPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~-----~~~~~~~~y~~~~h~  210 (346)
T TIGR01850       137 EEIK-GARLIANPGCYPTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFP-----EVNENLRPYKVTGHR  210 (346)
T ss_pred             HHhC-CCcEEEcCCcHHHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccch-----hhcCCeeeeccCCcC
Confidence            7887 68899999999999999999999998886  678899999999865211111111     12357888875532 


Q ss_pred             --HHHHHHhhhhcC---ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCC
Q 019445          220 --KAVGKVLPALNG---KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVG  293 (341)
Q Consensus       220 --~~~~~~lpel~~---~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~  293 (341)
                        .|+.+.+..+.+   +++++++|||++|||+.+++++++++++.+|++++|+++|+ +||++++.-.+-|-.- +..|
T Consensus       211 h~~Ei~~~l~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~V~v~~~~~~p~~~-~v~g  289 (346)
T TIGR01850       211 HTPEIEQELGRLAGGKVKVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFYADEPFVRVLPEGEYPSTK-AVIG  289 (346)
T ss_pred             cHHHHHHHHHHhcCCCCCEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcChH-HhcC
Confidence              233333332211   37899999999999999999999999999999999999998 5999987542123221 2334


Q ss_pred             CcceeEEeCCCccee--cCCeEEEEEEeCCCc-chhhhHHHHHHHHh
Q 019445          294 DSRSSIFDAKAGIAL--SKNFVKLVSWYDNEW-GYSSRVIDLIVHMA  337 (341)
Q Consensus       294 ~~~s~~~d~~~~~~~--~~~~~k~~~wydne~-gy~~r~~d~~~~~~  337 (341)
                      .-+-.|   +  ...  ..+.+.+++=-||=. |=|-+-+-.++.|-
T Consensus       290 ~n~~~i---g--~~~d~~~~~l~~~~~~DNL~KGAAg~AVq~~n~~~  331 (346)
T TIGR01850       290 SNFCDI---G--FAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNLMF  331 (346)
T ss_pred             CCeEEE---E--EEEcCCCCEEEEEEEeechhhhHHHHHHHHHHHHc
Confidence            333222   2  122  134566777788853 44444444455443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=100.00  E-value=1.7e-33  Score=270.30  Aligned_cols=242  Identities=15%  Similarity=0.183  Sum_probs=186.7

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      ++||+|+|+ ||+|++++|+|.+  ||.+++..+.+.+..++.                          +..++..+. +
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~--------------------------~~~~~~~~~-v   59 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK--------------------------VTFEGRDYT-V   59 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe--------------------------eeecCceeE-E
Confidence            589999999 9999999999998  999999999765222221                          111222222 2


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCC------CcEEe
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPE------LDIVS  153 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~------~~iIs  153 (341)
                      .+.+++  .|  .++|+||+|+|++.++++++++.++|+++||+|++++   +.|..++++|++.++..      .++|+
T Consensus        60 ~~~~~~--~~--~~~D~vf~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIa  135 (344)
T PLN02383         60 EELTED--SF--DGVDIALFSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIA  135 (344)
T ss_pred             EeCCHH--HH--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEE
Confidence            222322  23  3899999999999999999999999999999999987   48899999998888731      23999


Q ss_pred             CCCCccceecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccccccccccccccC-----
Q 019445          154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSST-----  216 (341)
Q Consensus       154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~gr~~~~niiP~~~-----  216 (341)
                      ||||+||+++..|++|+++++|++..+++++++||.++            ++.+.+....+++...++|++|+..     
T Consensus       136 nPgC~~t~~~laL~PL~~~~~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~  215 (344)
T PLN02383        136 NPNCSTIICLMAVTPLHRHAKVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQEN  215 (344)
T ss_pred             CCCcHHHHHHHHHHHHHHcCCeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccC
Confidence            99999999999999999999999999999999999743            1222222345667788899999874     


Q ss_pred             ChhHHHHHHhhhh-----c--CceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccC
Q 019445          217 GAAKAVGKVLPAL-----N--GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY  281 (341)
Q Consensus       217 g~~~~~~~~lpel-----~--~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~  281 (341)
                      |..+++.++.-|+     .  -+++++|+|||++|||+.++|++++++++.++++++|++   .||++++..
T Consensus       216 g~~~~E~~~~~e~~kil~~~~~~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~---~p~v~v~~~  284 (344)
T PLN02383        216 GYNEEEMKLVKETRKIWNDDDVKVTATCIRVPVMRAHAESINLQFEKPLDEATAREILAS---APGVKIIDD  284 (344)
T ss_pred             CCChHHHHHHHHHHHHhCCCCCeEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhc---CCCCEEEeC
Confidence            2222222222222     1  138899999999999999999999999999999999987   588888765

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=100.00  E-value=2.4e-33  Score=272.53  Aligned_cols=240  Identities=16%  Similarity=0.126  Sum_probs=176.2

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +++||+|+|+ |++|++++|+|.+||++||+.+.+....++.+      ...++.+.               +.....+.
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i------~~~~~~l~---------------~~~~~~~~   95 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSF------GSVFPHLI---------------TQDLPNLV   95 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCc------hhhCcccc---------------Ccccccee
Confidence            3579999999 99999999999999999999998753333211      11122111               00111111


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---C--------CCe--------eeeccC---
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---D--------APM--------FVVGVN---  141 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d--------~~~--------~V~Gvn---  141 (341)
                        +.+..+|  .++|+||+|+|++.++++++++ ++|+++||+|++++   +        .|.        .+||++   
T Consensus        96 --~~~~~~~--~~~DvVf~Alp~~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~  170 (381)
T PLN02968         96 --AVKDADF--SDVDAVFCCLPHGTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQ  170 (381)
T ss_pred             --cCCHHHh--cCCCEEEEcCCHHHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhC
Confidence              1122223  3899999999999999999985 78999999999986   1        232        356653   


Q ss_pred             ccccCCCCcEEeCCCCccceecchhHHHhhhcce--eEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChh
Q 019445          142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI--VEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA  219 (341)
Q Consensus       142 ~~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi--~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~  219 (341)
                      +++++ +.++||||||+||++...|++|+++++|  ++..+++++++||.++-.     ...---.....|+.||.-+. 
T Consensus       171 r~~i~-~~~iIAnPgC~~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~-----~~~~l~~e~~~n~~~y~~~~-  243 (381)
T PLN02968        171 REEIK-SARLVANPGCYPTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGA-----KEANLYTEIAEGIGAYGVTR-  243 (381)
T ss_pred             HHHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCccc-----chhhhHHHhcccceeeccCC-
Confidence            56666 6889999999999999999999999999  678889999999876421     11100122234667776552 


Q ss_pred             HHHHHHhhhhcC----------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-Cccccccc
Q 019445          220 KAVGKVLPALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILG  280 (341)
Q Consensus       220 ~~~~~~lpel~~----------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~  280 (341)
                         |+|+||+++          +++++++|||++|||+.+++++++++++.+|++++|+++|+ .||++++.
T Consensus       244 ---h~h~pEie~~~~~~~~~~~~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~y~~~~fV~~~~  312 (381)
T PLN02968        244 ---HRHVPEIEQGLADAAGSKVTPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKERYEGEEFVKVLE  312 (381)
T ss_pred             ---CCCcchHHHHHHHHhCCCCCEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHhCCCCCEEEeCC
Confidence               566666332          37899999999999999999999999999999999999887 59999874

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=100.00  E-value=1.4e-32  Score=264.90  Aligned_cols=295  Identities=21%  Similarity=0.218  Sum_probs=199.2

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||+|+|+ |++|++++|+|.+||+++++++.+....++.++      ..++.+. .         + .   .. .+.+
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~------~~~~~~~-~---------~-~---~~-~~~~   60 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLS------DVHPHLR-G---------L-V---DL-VLEP   60 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchH------HhCcccc-c---------c-c---Cc-eeec
Confidence            479999999 999999999999999999999987522222111      1222222 0         0 0   01 1221


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC--C--------------------CCeeeeccCc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--D--------------------APMFVVGVNE  142 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~--d--------------------~~~~V~Gvn~  142 (341)
                        .++..|  .++|+||.|||+..+.+.+++++++|+++||+|++++  +                    .|..++++|+
T Consensus        61 --~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~  136 (343)
T PRK00436         61 --LDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNR  136 (343)
T ss_pred             --CCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCH
Confidence              222122  4799999999999999999999999999999999976  1                    2344444567


Q ss_pred             cccCCCCcEEeCCCCccceecchhHHHhhhccee--EEEEEEEeeccCccee-eeCCCCCCcccccccccccccccCCh-
Q 019445          143 KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSMKDWRGGRAASFNIIPSSTGA-  218 (341)
Q Consensus       143 ~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~--~~~ittv~a~s~~~~~-~d~~s~~~~~~gr~~~~niiP~~~g~-  218 (341)
                      ++++ +.++||||||+||+++..|++|++..+|+  +..+++++++||.++- .+..+ ....     ..|++||..+. 
T Consensus       137 ~~i~-~~~iIanPgC~~t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~-~~~~-----~~~~~~y~~~~h  209 (343)
T PRK00436        137 EEIK-GARLIANPGCYPTASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTL-FSEV-----NENLRPYKVGGH  209 (343)
T ss_pred             HHhc-CCCEEECCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCcccccc-chhh-----cCCeeecccCCC
Confidence            8887 57999999999999999999999988887  7999999999998652 22111 1111     24666666542 


Q ss_pred             --hHHHHHHhhhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCCCc
Q 019445          219 --AKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVGDS  295 (341)
Q Consensus       219 --~~~~~~~lpel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~~~  295 (341)
                        .+|+.+++..+.++++++++|||++|||+.+++++++++++.+|++++|+++|+ +||+++..-..-|-.- +..|..
T Consensus       210 ~h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y~~~~~v~v~~~~~~p~~~-~v~g~~  288 (343)
T PRK00436        210 RHTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFYADEPFVRVLPEGQYPETK-SVRGSN  288 (343)
T ss_pred             CCHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCcEEEeCCCCCcchh-hhCCCC
Confidence              223333333332258899999999999999999999999999999999999998 5998887532112111 223433


Q ss_pred             ceeEEeCCCcceecCCeEEEEEEeCCCc-chhhhHHHHHHHH
Q 019445          296 RSSIFDAKAGIALSKNFVKLVSWYDNEW-GYSSRVIDLIVHM  336 (341)
Q Consensus       296 ~s~~~d~~~~~~~~~~~~k~~~wydne~-gy~~r~~d~~~~~  336 (341)
                      +-.|   +...-..++.+.+++=-||=- |=|-.-+-.++.|
T Consensus       289 ~~~i---g~~~d~~~~~~~~~~~~DNL~kGAA~~Avq~~nl~  327 (343)
T PRK00436        289 FCDI---GFAVDERTGRLVVVSAIDNLVKGAAGQAVQNMNIM  327 (343)
T ss_pred             eEEE---EEEEcCCCCEEEEEEEecccchhHHHHHHHHHHHH
Confidence            2222   111001245677777788842 4344434344433

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=9.2e-33  Score=259.25  Aligned_cols=285  Identities=21%  Similarity=0.262  Sum_probs=198.2

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHc-CCCcEEEEeeCC-CCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQ-RDDVELVAVNDP-FISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~-~p~~elv~i~~~-~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |+||||+|+ |.+|++++++|.+ |+.++.+.+..+ +..++          .|..|               .++.+.+.
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~----------~~~~f---------------~~~~~~v~   55 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGK----------KYIEF---------------GGKSIGVP   55 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCC----------ccccc---------------cCccccCc
Confidence            469999999 9999999999998 888875555432 11111          12222               22222221


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-----CCCeeeeccCccccCCC--C-cEEeC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--L-DIVSN  154 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-----d~~~~V~Gvn~~~~~~~--~-~iIsn  154 (341)
                       +.-.+...|+  ++|+||+|.|...++++++++.++|+  ++||+.|.     |+|.+|++||++.+...  . +||+|
T Consensus        56 -~~~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iian  130 (334)
T COG0136          56 -EDAADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIAN  130 (334)
T ss_pred             -cccccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEEC
Confidence             1003344554  89999999999999999999999998  77888764     69999999998776531  2 49999


Q ss_pred             CCCccceecchhHHHhhhcceeEEEEEEEeeccCcce-e-----------eeCCCCCCcccccccccccccccCC-----
Q 019445          155 ASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-T-----------VDGPSMKDWRGGRAASFNIIPSSTG-----  217 (341)
Q Consensus       155 p~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~-~-----------~d~~s~~~~~~gr~~~~niiP~~~g-----  217 (341)
                      |+|+|..|++.||+|+++|+|++..++|+||+||.+. .           .++.+- +. .++.+++|++|+..+     
T Consensus       131 pNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i-~~-~~~~iAfNviP~I~~~~~ng  208 (334)
T COG0136         131 PNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPI-LP-IGYPLAFNVIPHIDGFLDNG  208 (334)
T ss_pred             CChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCccchhhHHHHHhhhccCccc-cc-ccccccccccccCCccccCC
Confidence            9999999999999999999999999999999999754 1           112221 11 167889999999965     


Q ss_pred             hhHHHHHHhhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCC-cceeec
Q 019445          218 AAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTE-EDVVST  289 (341)
Q Consensus       218 ~~~~~~~~lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~-~~~vs~  289 (341)
                      ..+|+.|+.-|.++       +++++|+|||+++||...++++++++++.+|+.+.+...  .|-+-+....+ .|+.-.
T Consensus       209 ~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~--ap~v~v~~~~~~~P~~~~  286 (334)
T COG0136         209 YTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPS--APGVVVVDNPEDRPQTPL  286 (334)
T ss_pred             ccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhcc--CCCcEEEeCCccCccChh
Confidence            55565555544433       588999999999999999999999999999999665332  23333333222 455555


Q ss_pred             ccCCCcceeEEeCCCcce-ecCCeEEEEEEeCC-Ccchh
Q 019445          290 DFVGDSRSSIFDAKAGIA-LSKNFVKLVSWYDN-EWGYS  326 (341)
Q Consensus       290 d~~~~~~s~~~d~~~~~~-~~~~~~k~~~wydn-e~gy~  326 (341)
                      |-.|...  ++-.+...- ..++.+++..==|| -||=|
T Consensus       287 d~~g~~~--v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA  323 (334)
T COG0136         287 DATGGDE--VSVGRIRKDLSGPEGLKLWVVGDNLRKGAA  323 (334)
T ss_pred             hhcCCCc--eEEeEeeecCCCCCcEEEEEEechhhhhhH
Confidence            6666552  222221110 12344666555676 34533

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=100.00  E-value=1.3e-32  Score=263.48  Aligned_cols=233  Identities=15%  Similarity=0.185  Sum_probs=174.6

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcE---EEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVE---LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~e---lv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +||||+|+ |.+|++++++|.+|++|.   +....+.+..++                          .+.++++...+.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~--------------------------~~~f~~~~~~v~   54 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQA--------------------------APSFGGTTGTLQ   54 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCC--------------------------cCCCCCCcceEE
Confidence            38999999 999999999999887774   333333211111                          222334433333


Q ss_pred             ecCCCCCC-CccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-----CCCeeeeccCccccCCC--CcE--E
Q 019445           83 GFRNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE--LDI--V  152 (341)
Q Consensus        83 ~~~~~~~~-~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-----d~~~~V~Gvn~~~~~~~--~~i--I  152 (341)
                         +.++. .|  .++|+||+|.|...++++++++.++|...++||++++     |+|++|++||++.+...  ..+  |
T Consensus        55 ---~~~~~~~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~i  129 (366)
T TIGR01745        55 ---DAFDIDAL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTF  129 (366)
T ss_pred             ---cCcccccc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeE
Confidence               23232 34  4899999999999999999999999943255555543     69999999998877642  456  8


Q ss_pred             eCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcce------------eee--------CC----------------
Q 019445          153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVD--------GP----------------  196 (341)
Q Consensus       153 snp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d--------~~----------------  196 (341)
                      +||+|+|+.+++.|++||++|+|++..++|+||+||.+.            +.+        +.                
T Consensus       130 anPNCst~~l~~aL~pL~~~~~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~  209 (366)
T TIGR01745       130 VGGNCTVSLMLMSLGGLFANDLVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRS  209 (366)
T ss_pred             ECcCHHHHHHHHHHHHHHhccCccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhcccccccccc
Confidence            999999999999999999999999999999999999762            112        10                


Q ss_pred             -CCCCcccccccccccccccC-----ChhHHHHHHhhhhcC--------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHH
Q 019445          197 -SMKDWRGGRAASFNIIPSST-----GAAKAVGKVLPALNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEE  262 (341)
Q Consensus       197 -s~~~~~~gr~~~~niiP~~~-----g~~~~~~~~lpel~~--------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~e  262 (341)
                       ......+++++++|++|+..     |.++|+.|+.-|.++        ++++||+|||+++||...++++++++++.++
T Consensus       210 ~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l~VsaTcVRVPV~~gHs~sv~ve~~~~vs~e~  289 (366)
T TIGR01745       210 GELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTIPVDGLCVRIGALRCHSQAFTIKLKKDVSLET  289 (366)
T ss_pred             CCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCCcEEEEEEecceeccEEEEEEEEECCCCCHHH
Confidence             11234467889999999983     444554443333221        3789999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 019445          263 IKNAIKEE  270 (341)
Q Consensus       263 i~~~~~~a  270 (341)
                      ++++++++
T Consensus       290 i~~~L~~~  297 (366)
T TIGR01745       290 IEEIIRAH  297 (366)
T ss_pred             HHHHHHhC
Confidence            99999985

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=99.92  E-value=1.5e-24  Score=192.78  Aligned_cols=273  Identities=18%  Similarity=0.209  Sum_probs=182.9

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      ..+|||.+|+ ||+|.+++|++.+||++|+.-+.+....++.+.       .|.+..   +...   .|..         
T Consensus        18 k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~-------~ytk~e---iqy~---~lst---------   75 (340)
T KOG4354|consen   18 KDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLE-------VYTKLE---IQYA---DLST---------   75 (340)
T ss_pred             CCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCccc-------Ccchhh---eeec---ccch---------
Confidence            3589999999 999999999999999999999987633333221       122111   1000   1111         


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHh--CCCcEEEecCCCCCCC--eeeeccC----ccccCCCCcEEeCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK--GGAKKVVISAPSKDAP--MFVVGVN----EKEYKPELDIVSNA  155 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~--~G~k~V~lSa~~~d~~--~~V~Gvn----~~~~~~~~~iIsnp  155 (341)
                       .|...+. ....+|..+.++|..+-+..+...-.  ..-+.|++|++-+-.|  .++||++    +++++ +++.||||
T Consensus        76 -~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na~~iaNP  152 (340)
T KOG4354|consen   76 -VDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NARLIANP  152 (340)
T ss_pred             -hhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hhhhccCC
Confidence             0111110 01256888889998877766654332  2345677888866555  8999996    67777 68999999


Q ss_pred             CCccce----ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccc---------ccccccccCChhHHH
Q 019445          156 SCTTNC----LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAA---------SFNIIPSSTGAAKAV  222 (341)
Q Consensus       156 ~C~tt~----Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~---------~~niiP~~~g~~~~~  222 (341)
                      |||+|.    |.|++|.+.-                  +.-++|.|| .+++|+.+         +.|++||.-..    
T Consensus       153 GCYaTgsQl~l~Pllk~i~g------------------~p~ifgvSG-ySGAGtkpspkNd~~~l~nnlipY~ltd----  209 (340)
T KOG4354|consen  153 GCYATGSQLPLVPLLKAILG------------------KPEIFGVSG-YSGAGTKPSPKNDYSELANNLIPYGLTD----  209 (340)
T ss_pred             CcccccCcccchHHHHHhcC------------------Ccceeeecc-ccCCCCCCCCccCHHHHhcCCccccccc----
Confidence            999998    8888887531                  112344554 55556553         56899998432    


Q ss_pred             HHHhhhhcC----ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCCCcce
Q 019445          223 GKVLPALNG----KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVGDSRS  297 (341)
Q Consensus       223 ~~~lpel~~----~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~~~~s  297 (341)
                      |.|.||+.+    .+.++++..|.++|+..|+++.+++.++.+|++++|+..|+ ++|+.+++  |=|+|- |..|.-|-
T Consensus       210 HiHerEIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~d--dvPlvk-dv~gsh~v  286 (340)
T KOG4354|consen  210 HIHEREISQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLD--DVPLVK-DVRGSHYV  286 (340)
T ss_pred             cchhHhHHHhhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeec--ccccee-ccCCccee
Confidence            555666665    46889999999999999999999999999999999999999 69998874  456653 55654443


Q ss_pred             eEEeCCCcceecCCeEEEEEEeCCCc-chhhhHH
Q 019445          298 SIFDAKAGIALSKNFVKLVSWYDNEW-GYSSRVI  330 (341)
Q Consensus       298 ~~~d~~~~~~~~~~~~k~~~wydne~-gy~~r~~  330 (341)
                      . +- +...-..++.+-+++=-||-. |=|.+-+
T Consensus       287 ~-~g-gF~~~~~g~Ravii~tIDNLlKGAatQaL  318 (340)
T KOG4354|consen  287 H-MG-GFPDRIPGDRAVIISTIDNLLKGAATQAL  318 (340)
T ss_pred             E-ec-cccCCCCCceEEEEEehhhhhhhHHHHHH
Confidence            2 21 222222345567777777743 4444444

>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=99.84  E-value=7.5e-21  Score=170.38  Aligned_cols=238  Identities=16%  Similarity=0.214  Sum_probs=172.5

Q ss_pred             eeEE-EEcc-CHHHHHHHHHHHcCCCcEEEEeeCC-CCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            7 IKIG-INGF-GRIGRLVARVALQRDDVELVAVNDP-FISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         7 irV~-I~G~-G~iG~~llr~l~~~p~~elv~i~~~-~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .|+| |+|+ |.+|++++-+|.+||+|+|..+... ...++.      | ...++|+ .+.-.++.      -..+. ..
T Consensus         4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~------y-a~a~~wk-qt~~lp~~------~~e~~-V~   68 (361)
T KOG4777|consen    4 KKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKR------Y-AFAGNWK-QTDLLPES------AHEYT-VE   68 (361)
T ss_pred             ccccceeeccchhHHHHHHHhccCCcceeeeecccccccCCc------e-Eecccch-hcccccch------hhhhh-Hh
Confidence            3566 9999 9999999999999999998877433 223332      1 2245676 43322221      01122 23


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-----CCCeeeeccCccccCC-----------
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKP-----------  147 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-----d~~~~V~Gvn~~~~~~-----------  147 (341)
                      +.+++.+    .++|+||+.++...+.+.-+.+.++|.  +++|+...     ++|++|+.+|+|.++.           
T Consensus        69 ec~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~  142 (361)
T KOG4777|consen   69 ECTADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMG  142 (361)
T ss_pred             hcChhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCC
Confidence            4455553    489999999999999999999999998  88888753     4999999999877652           


Q ss_pred             CCcEEeCCCCccceecchhHHHhhhcc-eeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhH----HH
Q 019445          148 ELDIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAK----AV  222 (341)
Q Consensus       148 ~~~iIsnp~C~tt~Lapllk~L~~~fg-i~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~----~~  222 (341)
                      ..-||+|++|.|..+...+|+||++|| |++-.++|+||+||.+.-    .|   ..+-....|++|+..|...    +.
T Consensus       143 ~G~iI~nsNCSTa~~v~plkpL~~~fgpi~~~~v~t~QAiSGAG~a----pg---v~~vdildnilp~iggee~k~ewet  215 (361)
T KOG4777|consen  143 KGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISGAGAA----PG---VELVDILDNILPGIGGEENKFEWET  215 (361)
T ss_pred             CceEEecCCCCeeeEEeechhHHhhccchhhhhhhhhhhhccCCcC----CC---chHHHHHHhhcCCCCccchhhhHHH
Confidence            357999999999998888999999996 777778999999987531    11   1123456689999977533    34


Q ss_pred             HHHhhhhcC-----------ceeEEEEEeeeeeEeeEEEEEEeCCC--CCHHHHHHHHHHhhc
Q 019445          223 GKVLPALNG-----------KLTGMSFRVPTVDVSVVDLTVRLEKE--ATYEEIKNAIKEESE  272 (341)
Q Consensus       223 ~~~lpel~~-----------~l~~~~~rVP~~~g~~~~l~v~l~~~--~~~~ei~~~~~~a~~  272 (341)
                      .+++-..+.           .++..|-|||+.+||+.-+.+++.-+  .+.+|+..++.++.-
T Consensus       216 ~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l~eyv~  278 (361)
T KOG4777|consen  216 AKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLLFEYVL  278 (361)
T ss_pred             HHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHHHhccC
Confidence            555543332           23567889999999999999998744  378899999888653

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=99.64  E-value=1.8e-15  Score=142.14  Aligned_cols=223  Identities=15%  Similarity=0.137  Sum_probs=138.4

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |.++||||+|.|.||..++..+.+.|+++++++.+...+...++.    ...+|...            ...+... +. 
T Consensus         2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~----A~~~Gi~~------------~~~~ie~-LL-   63 (302)
T PRK08300          2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLAR----ARRLGVAT------------SAEGIDG-LL-   63 (302)
T ss_pred             CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHH----HHHcCCCc------------ccCCHHH-HH-
Confidence            457899999999999998988888999999999986322111111    11111100            0001000 00 


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCC--CCcEEeCCCCccce
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTNC  161 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~--~~~iIsnp~C~tt~  161 (341)
                          +..+|  .++|+||+|||...+.+++++++++|+.++|.+... ..|++|+.+|.+++..  +.++|+||+|.|+.
T Consensus        64 ----~~~~~--~dIDiVf~AT~a~~H~e~a~~a~eaGk~VID~sPA~-~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~  136 (302)
T PRK08300         64 ----AMPEF--DDIDIVFDATSAGAHVRHAAKLREAGIRAIDLTPAA-IGPYCVPAVNLDEHLDAPNVNMVTCGGQATIP  136 (302)
T ss_pred             ----hCcCC--CCCCEEEECCCHHHHHHHHHHHHHcCCeEEECCccc-cCCcccCcCCHHHHhcccCCCEEECccHHHHH
Confidence                11123  379999999999999999999999999777765433 6899999999766643  46899999999999


Q ss_pred             ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe-
Q 019445          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV-  240 (341)
Q Consensus       162 Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV-  240 (341)
                      ++..++++++. ++.+.. .|+++.|.         | .|.+.     ||--+..    ...+.+-++.|--.+-++.+ 
T Consensus       137 ~v~Al~~v~~~-~~~eIv-at~~s~s~---------g-~gtr~-----nidE~~~----~t~~~~~~~~g~~~~kai~~~  195 (302)
T PRK08300        137 IVAAVSRVAPV-HYAEIV-ASIASKSA---------G-PGTRA-----NIDEFTE----TTSRAIEKVGGAARGKAIIIL  195 (302)
T ss_pred             HHHHhcccCcC-ceeeee-eeehhhcc---------C-Ccccc-----cHHHHHH----HHHHHHHHhcCcccceEEEEe
Confidence            98888887654 555443 66655541         1 22211     3311111    11222333333212222221 


Q ss_pred             -ee--eeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          241 -PT--VDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       241 -P~--~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                       |.  +--+--|++|..+.+.+.+.|.+.+.+.-+
T Consensus       196 npa~p~~~m~~tv~~~~~~~~~~~~i~~~~~~~~~  230 (302)
T PRK08300        196 NPAEPPLIMRDTVYCLVDEDADQDAIEASVHAMVA  230 (302)
T ss_pred             cCCCCCccceeeEEEeeCCCCCHHHHHHHHHHHHH
Confidence             10  112345788888777888998888877554

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.63  E-value=1.7e-16  Score=130.69  Aligned_cols=114  Identities=26%  Similarity=0.309  Sum_probs=83.1

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCC-ChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFI-STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~-~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ||||+|+ ||+|++++|+|.+||++|++.+.+.+. .++.+.      ..++.+. +             ...+.+. +.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~------~~~~~~~-~-------------~~~~~~~-~~   59 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS------EVFPHPK-G-------------FEDLSVE-DA   59 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH------HTTGGGT-T-------------TEEEBEE-ET
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee------hhccccc-c-------------ccceeEe-ec
Confidence            7999998 999999999999999999999988744 334333      2233222 1             0111111 12


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYK  146 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~  146 (341)
                      +++.+    .++|+||+|+|++.+++.+++++++|+++||+|++.+   +.|..++++|+++++
T Consensus        60 ~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~  119 (121)
T PF01118_consen   60 DPEEL----SDVDVVFLALPHGASKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK  119 (121)
T ss_dssp             SGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred             chhHh----hcCCEEEecCchhHHHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence            33332    4899999999999999999999999999999999987   367777777887765

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.35  E-value=4.2e-12  Score=119.03  Aligned_cols=153  Identities=18%  Similarity=0.184  Sum_probs=107.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++||||+|.|++|+.++..+++.++++++++.+...+...++.    ...+|.            .....+         
T Consensus         1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~----A~~~Gi------------~~~~~~---------   55 (285)
T TIGR03215         1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLAR----ARELGV------------KTSAEG---------   55 (285)
T ss_pred             CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHH----HHHCCC------------CEEECC---------
Confidence            3799999999999999887777888999999986322111110    011110            000111         


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCC--CCcEEeCCCCccceec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNASCTTNCLA  163 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~--~~~iIsnp~C~tt~La  163 (341)
                       .+.+ ....++|+||+|||...+.+.+.+++++|+.+++.+ |....|.+++.+|.++...  +.++|+||+|.++.++
T Consensus        56 -~e~l-l~~~dIDaV~iaTp~~~H~e~a~~al~aGk~VIdek-Pa~~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~~  132 (285)
T TIGR03215        56 -VDGL-LANPDIDIVFDATSAKAHARHARLLAELGKIVIDLT-PAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIV  132 (285)
T ss_pred             -HHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCCEEEECC-ccccCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHHH
Confidence             1111 001378999999999999999999999999766655 3336799999999665542  4689999999999988


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccC
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITA  188 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~  188 (341)
                      -.++.+++...+  ..++++++.|+
T Consensus       133 ~al~r~~d~~~~--~iv~ti~s~S~  155 (285)
T TIGR03215       133 AAISRVAPVHYA--EIVASIASRSA  155 (285)
T ss_pred             HHHHHhhccccE--EEEEEEEeecc
Confidence            888888876644  45567776653

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.06  E-value=5.1e-10  Score=98.88  Aligned_cols=113  Identities=16%  Similarity=0.249  Sum_probs=76.1

Q ss_pred             hHHHhhh-cceeEEEEEEEeeccCccee------------eeCCCCCCcccccccccccccccCC-hhH------HHHHH
Q 019445          166 AKVIHDK-FGIVEGLMTTVHSITATQKT------------VDGPSMKDWRGGRAASFNIIPSSTG-AAK------AVGKV  225 (341)
Q Consensus       166 lk~L~~~-fgi~~~~ittv~a~s~~~~~------------~d~~s~~~~~~gr~~~~niiP~~~g-~~~------~~~~~  225 (341)
                      |+||+++ +++++..+++++++||.++-            +.+..-+.......+++|++||..+ ..+      ++-+.
T Consensus         1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~   80 (184)
T PF02774_consen    1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM   80 (184)
T ss_dssp             HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred             CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence            5678887 99999999999999998652            1222122334456788999999976 221      11111


Q ss_pred             hhh------hcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcC--ccccccc
Q 019445          226 LPA------LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEG--KLKGILG  280 (341)
Q Consensus       226 lpe------l~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~--~~~~il~  280 (341)
                      +-|      ....++++|+|||++|||+.++|++++  .+..++.++++.+|+.  +|+.+..
T Consensus        81 ~~~~~~~l~~~~~v~~t~~~vPv~rG~~~ti~v~~~--~~~~~~~~~~~~~~~~~~~~V~~~~  141 (184)
T PF02774_consen   81 IAETRKILGFPPRVSFTCVRVPVFRGHLATIYVELK--ETPVDVEEIYEAFYKGPEPFVRVDP  141 (184)
T ss_dssp             HHHHHHHCTETTEEEEEEEEESSSSEEEEEEEEEES--SSHHHHHHHHHHHHTSTTEEEEESS
T ss_pred             hccccceeeccccccccEEEEeeeeeEceeEEEEec--CCHHHHHHHHHHHhCCCCcEEEEcC
Confidence            111      111578899999999999999999996  3455666666666653  6665553

It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.80  E-value=6.5e-08  Score=92.17  Aligned_cols=88  Identities=25%  Similarity=0.337  Sum_probs=63.9

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      .++||||+|+|.+|+.+++.+.++|++||+++.+.. +.+...      ...+                       ++..
T Consensus         2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~-~~~~~~------~~~~-----------------------v~~~   51 (324)
T TIGR01921         2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR-GAETLD------TETP-----------------------VYAV   51 (324)
T ss_pred             CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC-cHHHHh------hcCC-----------------------cccc
Confidence            468999999999999999999999999999998872 211110      0000                       0000


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~  125 (341)
                      .+.+.+   ..++|+|+.|+|.....+.+..++++|.-+|+
T Consensus        52 ~d~~e~---l~~iDVViIctPs~th~~~~~~~L~aG~NVV~   89 (324)
T TIGR01921        52 ADDEKH---LDDVDVLILCMGSATDIPEQAPYFAQFANTVD   89 (324)
T ss_pred             CCHHHh---ccCCCEEEEcCCCccCHHHHHHHHHcCCCEEE
Confidence            011111   24799999999999999999999999987665

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.77  E-value=2.9e-08  Score=81.49  Aligned_cols=113  Identities=22%  Similarity=0.249  Sum_probs=73.5

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCC-ChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFI-STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~-~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||+|+ |++|+.+++.+.++|+++++++.+... .++...      ..+++..          .+        ++...
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~------~~~~~~~----------~~--------~~~~~   56 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVS------EAGPHLK----------GE--------VVLEL   56 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHH------HHCcccc----------cc--------ccccc
Confidence            6899998 999999999999999999999955311 111111      1121111          00        01111


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHH---HHHhCCCcEEEecCCCC---CCCeeeeccCccccC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAA---AHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYK  146 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~---~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~  146 (341)
                      +.+  .|...++|+||.|+|.....+.+.   +.++.|+.++++|++.+   +.|..++++|+++++
T Consensus        57 ~~~--~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~~  121 (122)
T smart00859       57 EPE--DFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK  121 (122)
T ss_pred             ccC--ChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHhc
Confidence            222  233358999999999998887543   33578887888887765   467777888876553

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.60  E-value=1.6e-07  Score=87.96  Aligned_cols=97  Identities=21%  Similarity=0.217  Sum_probs=68.7

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      |+.|.++||||+|+|+||+.+++.|.+ .++++++++.++..+.  ...   +...+|..                    
T Consensus         1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~--a~~---~a~~~g~~--------------------   55 (271)
T PRK13302          1 MSSRPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQR--HAD---FIWGLRRP--------------------   55 (271)
T ss_pred             CCCCCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHH--HHH---HHHhcCCC--------------------
Confidence            888888999999999999999999987 5889999998862211  110   00111100                    


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      ..+.  +++++.   .++|+|++|+|.....+.+.+++++|..+++.|
T Consensus        56 ~~~~--~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s   98 (271)
T PRK13302         56 PPVV--PLDQLA---THADIVVEAAPASVLRAIVEPVLAAGKKAIVLS   98 (271)
T ss_pred             cccC--CHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCCcEEEec
Confidence            0011  233331   368999999999999999999999998777665

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.46  E-value=5e-07  Score=84.35  Aligned_cols=91  Identities=27%  Similarity=0.335  Sum_probs=64.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      +||||+|+|++|+.+++.+.++|+++++++.......+....         .+.                ..+.++.  +
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~---------~~~----------------~~~~~~~--d   54 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR---------ALG----------------EAVRVVS--S   54 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh---------hhc----------------cCCeeeC--C
Confidence            699999999999999999999999999998754111111000         000                0012222  3


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .+++   ..++|+|++|||+....+.+.+++++|+.+++.|
T Consensus        55 ~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s   92 (265)
T PRK13303         55 VDAL---PQRPDLVVECAGHAALKEHVVPILKAGIDCAVIS   92 (265)
T ss_pred             HHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeC
Confidence            3333   2478999999999999999999999998877665

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.38  E-value=3.2e-07  Score=75.82  Aligned_cols=94  Identities=28%  Similarity=0.295  Sum_probs=61.2

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCC---hhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFIS---TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~---~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |||+|+|+ |++|+.+++.+.++|+++|+++.++..+   ++....+....                      ...++++
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~----------------------~~~~~v~   58 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG----------------------PLGVPVT   58 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS----------------------T-SSBEB
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC----------------------Ccccccc
Confidence            59999999 9999999999999999999999887331   11111111000                      0112222


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .  +.+++   ...+|+++++|-.....+.++.+++.|...|+-+
T Consensus        59 ~--~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGT   98 (124)
T PF01113_consen   59 D--DLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGT   98 (124)
T ss_dssp             S---HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-
T ss_pred             h--hHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCCEEEEC
Confidence            1  33332   2358999999988888888898999998766654

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.26  E-value=2.9e-06  Score=79.26  Aligned_cols=97  Identities=24%  Similarity=0.329  Sum_probs=65.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +||+|+|+ |++|+.+++.+.++|+++|+++.++. +.+..    ..+  .+.+. +         +.  ...+.++.  
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~-~~~~~----~~~--~~~~~-~---------~~--~~gv~~~~--   60 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH-GSSLQ----GTD--AGELA-G---------IG--KVGVPVTD--   60 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Ccccc----CCC--HHHhc-C---------cC--cCCceeeC--
Confidence            69999996 99999999999999999999998841 11100    000  00000 0         00  00122222  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +++++   ...+|+|++||+.....+.+..++++|..+|+-+
T Consensus        61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigt   99 (266)
T TIGR00036        61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGT   99 (266)
T ss_pred             CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence            33333   1368999999999999999999999998777655

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=98.25  E-value=5.7e-06  Score=76.03  Aligned_cols=100  Identities=27%  Similarity=0.292  Sum_probs=68.3

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||+|+|+ ||+|++++|++.+.|+++|++.-+...+..     ..  +-.|.+.            ..+...+.+.. 
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~-----~g--~d~ge~~------------g~~~~gv~v~~-   61 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLS-----LG--SDAGELA------------GLGLLGVPVTD-   61 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccc-----cc--cchhhhc------------cccccCceeec-
Confidence            579999999 999999999999999999999987622110     00  0001111            01111233332 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       ++...   ..++||++|.|-...+.+.++.+++.|.+.|+-|.-
T Consensus        62 -~~~~~---~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTG  102 (266)
T COG0289          62 -DLLLV---KADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG  102 (266)
T ss_pred             -chhhc---ccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCC
Confidence             11111   347899999999999999999999999888887643

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.14  E-value=7.1e-06  Score=75.94  Aligned_cols=90  Identities=22%  Similarity=0.262  Sum_probs=65.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .+||||+|+|.||+.+++.|...  +.+++++|+++..+.  ..          .+. .              . .++..
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~--~~----------~~~-~--------------~-~~~~~   53 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL--PP----------ALA-G--------------R-VALLD   53 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH--HH----------Hhh-c--------------c-CcccC
Confidence            57999999999999999998764  459999998762111  00          011 0              0 11111


Q ss_pred             cCCCCCC-CccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           84 FRNPEEI-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        84 ~~~~~~~-~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                        +++++ .   ..+|+|+||.++..-++++++.|++|+..+++|-
T Consensus        54 --~l~~ll~---~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~Sv   94 (267)
T PRK13301         54 --GLPGLLA---WRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSA   94 (267)
T ss_pred             --CHHHHhh---cCCCEEEECCCHHHHHHHHHHHHhcCCCEEEECh
Confidence              33442 2   3789999999999999999999999999999983

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.13  E-value=6.1e-06  Score=76.71  Aligned_cols=89  Identities=26%  Similarity=0.271  Sum_probs=62.8

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||+|+|+ |++|+.+++.+.++|+++++++.+...+...  .   .    ..+                  .+..+. 
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~--~---~----~~~------------------~i~~~~-   52 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV--G---Q----GAL------------------GVAITD-   52 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc--c---c----CCC------------------CccccC-
Confidence            369999999 9999999999999999999999886221100  0   0    000                  011111 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                       +.+++   ..++|+|+++|+.....+.+..++++|+.+|+-
T Consensus        53 -dl~~l---l~~~DvVid~t~p~~~~~~~~~al~~G~~vvig   90 (257)
T PRK00048         53 -DLEAV---LADADVLIDFTTPEATLENLEFALEHGKPLVIG   90 (257)
T ss_pred             -CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEE
Confidence             23332   126899999999888899999999999977654

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.04  E-value=9.6e-06  Score=65.78  Aligned_cols=93  Identities=30%  Similarity=0.461  Sum_probs=64.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcC-CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~-p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +||||+|+|.+|+..++.+.++ |++++++|.++.  .+.....   ...   |.                  +..+.  
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~--~~~~~~~---~~~---~~------------------~~~~~--   52 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD--PERAEAF---AEK---YG------------------IPVYT--   52 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS--HHHHHHH---HHH---TT------------------SEEES--
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC--HHHHHHH---HHH---hc------------------ccchh--
Confidence            5999999999999999888877 899999999872  2211110   000   00                  11121  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.+++ ++..++|+|+.|||.....+.+..++++|. .|.+--|
T Consensus        53 ~~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP   94 (120)
T PF01408_consen   53 DLEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKP   94 (120)
T ss_dssp             SHHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESS
T ss_pred             HHHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcC
Confidence            22222 112479999999999999999999999998 4555544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.01  E-value=1.8e-05  Score=73.90  Aligned_cols=90  Identities=24%  Similarity=0.324  Sum_probs=62.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +||||+|+|++|+.+++.+.+.+ +++++++.++.  .+....+.   ..   +.                  ...+.  
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~--~~~a~~~a---~~---~~------------------~~~~~--   53 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN--LEKAENLA---SK---TG------------------AKACL--   53 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC--HHHHHHHH---Hh---cC------------------CeeEC--
Confidence            59999999999999999998764 79999998872  21111100   00   00                  01111  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +.+++.   .++|+|++|++.....+.+...+++|..++++|
T Consensus        54 ~~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s   92 (265)
T PRK13304         54 SIDELV---EDVDLVVECASVNAVEEVVPKSLENGKDVIIMS   92 (265)
T ss_pred             CHHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEc
Confidence            233331   378999999999999999999999998777765

>PRK11579 putative oxidoreductase; Provisional

Probab=97.96  E-value=3.2e-05  Score=74.81  Aligned_cols=92  Identities=26%  Similarity=0.435  Sum_probs=62.9

Q ss_pred             ceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ++||||+|+|.+|+. .++.+...|+++|++|.|..  .+..+      .   .+. .                ...+. 
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~--~~~~~------~---~~~-~----------------~~~~~-   54 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD--ATKVK------A---DWP-T----------------VTVVS-   54 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC--HHHHH------h---hCC-C----------------CceeC-
Confidence            589999999999984 67888888999999999862  22211      0   011 0                01111 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++ ....++|+|+.|||+....+.+.+++++|. .|.+--|
T Consensus        55 -~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP   96 (346)
T PRK11579         55 -EPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAGK-HVVVDKP   96 (346)
T ss_pred             -CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEeCC
Confidence             22222 112478999999999999999999999996 3544434

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.94  E-value=2.4e-05  Score=70.18  Aligned_cols=92  Identities=27%  Similarity=0.380  Sum_probs=66.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++|||+|+|.||..+++++.+.+ ++|++++.|...+.  .-.+.   ..                  +.+...     .
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek--~~~~~---~~------------------~~~~~~-----s   52 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEK--AKELE---AS------------------VGRRCV-----S   52 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHH--HHHHH---hh------------------cCCCcc-----c
Confidence            47999999999999999998763 69999999873221  11110   00                  001111     0


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.+++   ..++|+++||.++..-+++++++|++|...+++|--
T Consensus        53 ~ide~---~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVG   93 (255)
T COG1712          53 DIDEL---IAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVG   93 (255)
T ss_pred             cHHHH---hhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEech
Confidence            23332   248999999999999999999999999999998853

>PRK06270 homoserine dehydrogenase; Provisional

Probab=97.86  E-value=3.6e-05  Score=74.49  Aligned_cols=34  Identities=35%  Similarity=0.689  Sum_probs=30.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~   39 (341)
                      ++||||+|+|.+|+.++++|.+++         +++|++|.++
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~   44 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADS   44 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeC
Confidence            589999999999999999998763         6999999885

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.81  E-value=0.00015  Score=64.05  Aligned_cols=134  Identities=21%  Similarity=0.292  Sum_probs=84.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC-CCcEEEEee--CCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQR-DDVELVAVN--DPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~-p~~elv~i~--~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +.||+|+|.|.||--|+--+++| ..+|..+..  |+..|+-..+.-|....+|--..               +  +  .
T Consensus         4 k~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~---------------~--l--l   64 (310)
T COG4569           4 KRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVI---------------G--L--L   64 (310)
T ss_pred             cceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHH---------------H--H--H
Confidence            57999999999999777666666 345554443  33344422222223333321110               0  0  0


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccC-ccccCC-CCcEEeCCCCccc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVN-EKEYKP-ELDIVSNASCTTN  160 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn-~~~~~~-~~~iIsnp~C~tt  160 (341)
                      .  -|+     ..++|+||++|..+...+.++++.++|.+-+||+.. +--|-+|+-+| ++..+. +-+.|   -|-..
T Consensus        65 ~--~p~-----~~di~lvfdatsa~~h~~~a~~~ae~gi~~idltpa-aigp~vvp~~n~~eh~~a~nvnmv---tcggq  133 (310)
T COG4569          65 N--MPE-----FADIDLVFDATSAGAHVKNAAALAEAGIRLIDLTPA-AIGPYVVPVVNLEEHVDALNVNMV---TCGGQ  133 (310)
T ss_pred             h--CCC-----CCCcceEEeccccchhhcchHhHHhcCCceeecchh-ccCCeeccccchHHhcCCCCcceE---eecCc
Confidence            0  122     247899999999999999999999999999999743 22477888888 444442 34555   55556


Q ss_pred             eecchhHHH
Q 019445          161 CLAPLAKVI  169 (341)
Q Consensus       161 ~Lapllk~L  169 (341)
                      +-.|++...
T Consensus       134 atipiv~av  142 (310)
T COG4569         134 ATIPIVAAV  142 (310)
T ss_pred             ccchhhhhh
Confidence            666766553

>PLN02775 Probable dihydrodipicolinate reductase

Probab=97.75  E-value=0.0001  Score=69.15  Aligned_cols=97  Identities=25%  Similarity=0.180  Sum_probs=66.7

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      .+||+|+|+ |++|+++++.+.+ ++++||+..++..+++...                        +.+.|..++++..
T Consensus        11 ~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~------------------------~~~~g~~v~~~~~   65 (286)
T PLN02775         11 AIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVT------------------------VEVCGVEVRLVGP   65 (286)
T ss_pred             CCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccccccc------------------------ceeccceeeeecC
Confidence            489999999 9999999999999 8999999887633322110                        0111222334311


Q ss_pred             CCCCCCC--ccCCCcc-EEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           85 RNPEEIP--WAKTGAE-YVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        85 ~~~~~~~--w~~~~~D-vV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .|.++.-  -....+| |++|-|-.....+.++.+++.|++.|+-|
T Consensus        66 ~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGT  111 (286)
T PLN02775         66 SEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGT  111 (286)
T ss_pred             ccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence            1222210  0012578 99999999999999999999999988866

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.68  E-value=0.00013  Score=69.81  Aligned_cols=96  Identities=26%  Similarity=0.274  Sum_probs=63.5

Q ss_pred             CCceeEEEEccC-HHHHHHHHHHHcCCC-cEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            4 DKKIKIGINGFG-RIGRLVARVALQRDD-VELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         4 ~~~irV~I~G~G-~iG~~llr~l~~~p~-~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      |+++||||+|+| +.++..++.+.+.++ ++++++.|+.... +..+..+...                          .
T Consensus         1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~--------------------------~   54 (342)
T COG0673           1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA--------------------------K   54 (342)
T ss_pred             CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC--------------------------c
Confidence            367999999996 555679999999887 7999998873222 2222111110                          0


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .+.  +.+++ ....++|+|+-|||.....+.+.+++++|+. |.+--|
T Consensus        55 ~~~--~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGkh-Vl~EKP   99 (342)
T COG0673          55 AYT--DLEEL-LADPDIDAVYIATPNALHAELALAALEAGKH-VLCEKP   99 (342)
T ss_pred             ccC--CHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCCE-EEEcCC
Confidence            111  12221 0123689999999999999999999999974 444433

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.58  E-value=0.00015  Score=72.34  Aligned_cols=88  Identities=23%  Similarity=0.348  Sum_probs=57.0

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEEC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFG   75 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~   75 (341)
                      +++||||+|+|.+|+.++++|.+|+         ++++++|.++.....        .    .+.             ..
T Consensus         2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--------~----~~~-------------~~   56 (426)
T PRK06349          2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--------R----GVD-------------LP   56 (426)
T ss_pred             CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--------c----CCC-------------Cc
Confidence            5699999999999999999997764         689999987621110        0    000             00


Q ss_pred             CEEEEEEecCCCCCCCccCCCccEEEecCCC-ccCHHHHHHHHhCCCc
Q 019445           76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAK  122 (341)
Q Consensus        76 g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~-~~s~~~~~~~l~~G~k  122 (341)
                      +  ..++.  +++++ ..+.++|+|++|||. ..+.+++.+++++|..
T Consensus        57 ~--~~~~~--d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gkh   99 (426)
T PRK06349         57 G--ILLTT--DPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGKH   99 (426)
T ss_pred             c--cceeC--CHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCCe
Confidence            0  00111  22222 112478999999975 3457888899999963

>PRK10206 putative oxidoreductase; Provisional

Probab=97.50  E-value=0.00028  Score=68.39  Aligned_cols=94  Identities=16%  Similarity=0.244  Sum_probs=60.2

Q ss_pred             ceeEEEEccCHHHH-HHHHHHHc-CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGR-LVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~-~llr~l~~-~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |+||||+|+|.+++ ..++.+.. .++++|++|.|+.......+      ..++.                    +.++.
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~------~~~~~--------------------~~~~~   54 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA------PIYSH--------------------IHFTS   54 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHH------HhcCC--------------------CcccC
Confidence            47999999999875 45676655 46899999998732111111      11110                    01111


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        55 --~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP   96 (344)
T PRK10206         55 --DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLVEKP   96 (344)
T ss_pred             --CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcCC-cEEEecC
Confidence              12222 112478999999999999999999999995 4555444

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.44  E-value=0.00053  Score=65.39  Aligned_cols=100  Identities=23%  Similarity=0.279  Sum_probs=68.8

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCC--CcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCE
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p--~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      |++.+.+|.||+|+|++++.++|.|..-|  +.+|++|.+++... ...|.-.++                    . +  
T Consensus         1 ~~~s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~--------------------~-~--   57 (351)
T KOG2741|consen    1 VSDSATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNI--------------------P-N--   57 (351)
T ss_pred             CCCCceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCC--------------------C-C--
Confidence            67778899999999999999999998888  89999999983322 222211111                    0 0  


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                       .+++.  ..+++- ++..+|+|..++|+-...+++..++..|.. |.+--
T Consensus        58 -~k~y~--syEeLa-kd~~vDvVyi~~~~~qH~evv~l~l~~~K~-VL~EK  103 (351)
T KOG2741|consen   58 -PKAYG--SYEELA-KDPEVDVVYISTPNPQHYEVVMLALNKGKH-VLCEK  103 (351)
T ss_pred             -Ccccc--CHHHHh-cCCCcCEEEeCCCCccHHHHHHHHHHcCCc-EEecc
Confidence             01111  111111 134789999999999999999999998864 54443

>PRK08374 homoserine dehydrogenase; Provisional

Probab=97.40  E-value=0.00024  Score=68.70  Aligned_cols=105  Identities=25%  Similarity=0.289  Sum_probs=60.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCCCCCh-----hhhhhhcccccccCcccCceeeecCCcc
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFIST-----DYMTYMFKYDSVHGQWKHNELKVKDEKT   71 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~~~~~-----~~~a~ll~~ds~~g~~~~~~v~~~~~~~   71 (341)
                      ++||+|.|||-+|+.++|+|.++.         +++|++|.+.+...     -....++.+-...+...          .
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~----------~   71 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS----------N   71 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh----------h
Confidence            589999999999999999987631         48899998752110     00001111100000000          0


Q ss_pred             eEECCEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445           72 LLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        72 l~i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~  125 (341)
                      +.-+   ... ...+++++ +....+|+++++++.....+...+++++|+.+|.
T Consensus        72 ~~~~---~~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVt  120 (336)
T PRK08374         72 WGND---YEV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVT  120 (336)
T ss_pred             cccc---ccc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEE
Confidence            0000   000 00012221 1124789999999988888999999999986443

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=97.32  E-value=0.00045  Score=64.52  Aligned_cols=93  Identities=24%  Similarity=0.197  Sum_probs=61.5

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEe-eCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe-
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAV-NDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG-   83 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i-~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~-   83 (341)
                      +||.|+|+ |++|+++++++.+ +++|||+. -+.....+....                         +.|..+++.. 
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~-------------------------~~g~~v~v~~~   54 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAE-------------------------VAGKEILLHGP   54 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhh-------------------------hcccceeeecc
Confidence            58999999 9999999999988 89999986 333111111100                         1111233310 


Q ss_pred             ---cCCCCCCCccCCCcc-EEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           84 ---FRNPEEIPWAKTGAE-YVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        84 ---~~~~~~~~w~~~~~D-vV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                         ..+++.+.  ...+| |++|-|-.....+.+..+++.|+..|+-+
T Consensus        55 ~~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGT  100 (275)
T TIGR02130        55 SEREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGT  100 (275)
T ss_pred             ccccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcC
Confidence               01222221  12378 99999999999999999999999877765

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.26  E-value=0.00017  Score=58.58  Aligned_cols=84  Identities=26%  Similarity=0.294  Sum_probs=50.8

Q ss_pred             ccCHHHHHHHHHHHcCC---CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCCCC
Q 019445           13 GFGRIGRLVARVALQRD---DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEE   89 (341)
Q Consensus        13 G~G~iG~~llr~l~~~p---~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~~~   89 (341)
                      |+|.+|+.++++|.+++   ++++++|.+++ ....      .+.. ..+.       .. .+         ..  +.++
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~------~~~~-~~~~-------~~-~~---------~~--~~~~   53 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLIS------KDWA-ASFP-------DE-AF---------TT--DLEE   53 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEE------TTHH-HHHT-------HS-CE---------ES--SHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhh------hhhh-hhcc-------cc-cc---------cC--CHHH
Confidence            88999999999999875   79999999873 1100      0000 0000       00 00         00  2222


Q ss_pred             C-CccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445           90 I-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        90 ~-~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~  125 (341)
                      + .+  .++|+|+|||+.....++.+.++++|..+|.
T Consensus        54 ~~~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt   88 (117)
T PF03447_consen   54 LIDD--PDIDVVVECTSSEAVAEYYEKALERGKHVVT   88 (117)
T ss_dssp             HHTH--TT-SEEEE-SSCHHHHHHHHHHHHTTCEEEE
T ss_pred             HhcC--cCCCEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence            1 11  2689999999999999999999999985443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK06392 homoserine dehydrogenase; Provisional

Probab=97.17  E-value=0.0011  Score=63.74  Aligned_cols=33  Identities=36%  Similarity=0.663  Sum_probs=28.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcC-------CCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQR-------DDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~-------p~~elv~i~~~   39 (341)
                      +||+|+|||.+|+.++++|.++       .++++++|.+.
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds   40 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDS   40 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEEC
Confidence            3899999999999999999874       46899999875

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.07  E-value=0.0009  Score=72.98  Aligned_cols=99  Identities=15%  Similarity=0.058  Sum_probs=64.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcE------------EEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceE
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVE------------LVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLL   73 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~e------------lv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~   73 (341)
                      |.||+|+|+|++|+.+++.|.++|+++            ++.|.|..  .+....+.   ..++...             
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~--~~~a~~la---~~~~~~~-------------  630 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY--LKDAKETV---EGIENAE-------------  630 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC--HHHHHHHH---HhcCCCc-------------
Confidence            569999999999999999999998877            78888862  21111110   0010000             


Q ss_pred             ECCEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        74 i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                          .+.+ .-.|.+++.=...++|+|+.|+|.....+.+..++++|+..++.|
T Consensus       631 ----~v~l-Dv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        631 ----AVQL-DVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             ----eEEe-ecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence                0111 001222221001369999999999999999999999999777765

>PRK06813 homoserine dehydrogenase; Validated

Probab=97.04  E-value=0.001  Score=64.43  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=28.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~   39 (341)
                      +++|+|+|+|.+|+.++++|.++.         +++|++|.++
T Consensus         2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~   44 (346)
T PRK06813          2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR   44 (346)
T ss_pred             eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec
Confidence            589999999999999999986542         4788999764

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.78  E-value=0.0046  Score=59.25  Aligned_cols=99  Identities=24%  Similarity=0.325  Sum_probs=58.6

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCCCCChhhhhhhccccccc-CcccCceeeecCCcceE
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDPFISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLL   73 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~~~~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~   73 (341)
                      |+++||+|+|+|-+|+.++|+|.++.         ++++++|.+++.....     .+|-.- ..|.             
T Consensus         1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-----~~~~~~~~~~~-------------   62 (333)
T COG0460           1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-----DLDLLNAEVWT-------------   62 (333)
T ss_pred             CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-----cccccchhhhe-------------
Confidence            36799999999999999999998752         4788888876221110     001000 0011             


Q ss_pred             ECCEEEEEEecCCCCCCCccCCCccEEEecCCC--ccCH--HHHHHHHhCCCcEEEecCC
Q 019445           74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV--FTDK--DKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        74 i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~--~~s~--~~~~~~l~~G~k~V~lSa~  129 (341)
                      -++..-     .+ .++.+ ..+.|+|++++|.  ..+.  +...+++++|.  -++|+.
T Consensus        63 ~~~~~~-----~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN  113 (333)
T COG0460          63 TDGALS-----LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN  113 (333)
T ss_pred             eccccc-----cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC
Confidence            000000     00 11212 3578999999997  2334  67788899987  455654

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.69  E-value=0.0051  Score=58.82  Aligned_cols=111  Identities=23%  Similarity=0.342  Sum_probs=65.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecC-C---cceEECCEEEE
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKD-E---KTLLFGEKPVA   80 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~-~---~~l~i~g~~i~   80 (341)
                      +++|||++|+|.+|+-++-.+..-|.+++++|.+...+....+|    |..++.-. ..+...+ .   ..+. .|+ +.
T Consensus        16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~----~~ag~~~~-~~~e~~~~s~~a~Ai~-aGK-i~   88 (438)
T COG4091          16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAY----DRAGGPKI-EAVEADDASKMADAIE-AGK-IA   88 (438)
T ss_pred             CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHH----HHhcCCcc-cccccchhhHHHHHHh-cCc-EE
Confidence            57999999999999999988888899999999998666644443    32221110 0010000 0   0011 122 22


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCcc-CHHHHHHHHhCCCcEEE
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFT-DKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~-s~~~~~~~l~~G~k~V~  125 (341)
                      +..  |.+.+ .....+|+++++||+-. ..+.+..++..|...|-
T Consensus        89 vT~--D~~~i-~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVM  131 (438)
T COG4091          89 VTD--DAELI-IANDLIDVIIDATGVPEVGAKIALEAILHGKHLVM  131 (438)
T ss_pred             Eec--chhhh-hcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEE
Confidence            221  22222 22357899999999654 44556666776654443

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.66  E-value=0.0059  Score=59.16  Aligned_cols=92  Identities=20%  Similarity=0.180  Sum_probs=58.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      ++||||+|+ ++|+..++.+.+.| ++||++|.|...+. +.++..      ||                     +..+.
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~------~g---------------------i~~y~   54 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR------LG---------------------VPLYC   54 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH------hC---------------------CCccC
Confidence            589999999 56999999999888 89999999973221 222221      11                     00111


Q ss_pred             cCCCCCCCccCCCccEEEe--cCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVE--STGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~--at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.+++. .+.++|+|.-  ++|.+...+.+.+++++|.. |.+=-|
T Consensus        55 --~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkH-VL~EKP   98 (343)
T TIGR01761        55 --EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARGIH-VLQEHP   98 (343)
T ss_pred             --CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCCCe-EEEcCC
Confidence              222221 1124566655  44678889999999999963 544333

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.62  E-value=0.003  Score=52.44  Aligned_cols=81  Identities=25%  Similarity=0.294  Sum_probs=47.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      .+||+|+|+|++|..|.++|.+.. .+|+.+.+++... +..+..                        +++..  +.  
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~------------------------~~~~~--~~--   60 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAG-HEVVGVYSRSPASAERAAAF------------------------IGAGA--IL--   60 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--------------------------TT--------
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccc------------------------ccccc--cc--
Confidence            479999999999999999998876 7899998763211 111110                        11111  11  


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG  119 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~  119 (341)
                       +++++   ...+|++|.|+|-..-.+.++++.+.
T Consensus        61 -~~~~~---~~~aDlv~iavpDdaI~~va~~La~~   91 (127)
T PF10727_consen   61 -DLEEI---LRDADLVFIAVPDDAIAEVAEQLAQY   91 (127)
T ss_dssp             --TTGG---GCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred             -ccccc---cccCCEEEEEechHHHHHHHHHHHHh
Confidence             23332   24789999999988666666665543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.50  E-value=0.0083  Score=57.02  Aligned_cols=38  Identities=26%  Similarity=0.271  Sum_probs=29.4

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCC-cEEEEeeCC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDD-VELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~-~elv~i~~~   39 (341)
                      |+.++..||+|+|+|.+|+.+++.|..... .++. +.++
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr   39 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADR   39 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence            778777799999999999999999987652 2444 4444

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.45  E-value=0.0051  Score=60.27  Aligned_cols=102  Identities=21%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||-|+|+|.+|+.+++.|.++.+.+| .|.|++.+.  .+...  ++..++..          .+.++     +.   
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d~~V-~iAdRs~~~--~~~i~--~~~~~~v~----------~~~vD-----~~---   57 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGDGEV-TIADRSKEK--CARIA--ELIGGKVE----------ALQVD-----AA---   57 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCCceE-EEEeCCHHH--HHHHH--hhccccce----------eEEec-----cc---
Confidence            3589999999999999999999887665 455553222  11110  11111111          11111     00   


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~  130 (341)
                      +.+.+.--..+.|+||.|.|.+......+.+++.|+..+|+|...
T Consensus        58 d~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          58 DVDALVALIKDFDLVINAAPPFVDLTILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             ChHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCC
Confidence            111110002366999999999999999999999999999988643

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.45  E-value=0.0042  Score=54.46  Aligned_cols=96  Identities=22%  Similarity=0.342  Sum_probs=64.8

Q ss_pred             CceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .+.+|.|+|+|.+|+.++..-+. +.+++++++-|.  +++          .-|+.. +             +  +++..
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv--~~~----------~VG~~~-~-------------~--v~V~~  134 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDV--DPD----------KVGTKI-G-------------D--VPVYD  134 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcchhhcCceEEEEecC--CHH----------HhCccc-C-------------C--eeeec
Confidence            45799999999999998876544 557999999886  221          122222 1             1  22221


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      -.+.+..- ...++|+++.|.|...+.+.+..++++|+|.+.=-+|
T Consensus       135 ~d~le~~v-~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtP  179 (211)
T COG2344         135 LDDLEKFV-KKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTP  179 (211)
T ss_pred             hHHHHHHH-HhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccc
Confidence            11222210 1248999999999999999999999999997764444

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=96.39  E-value=0.0082  Score=54.10  Aligned_cols=95  Identities=20%  Similarity=0.299  Sum_probs=60.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHH-cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~-~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +.||+|+|+|.+|+.+++.+. ..+.++++++.|.  +.+.          .+..              ++|..+  ...
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~--d~~~----------~~~~--------------i~g~~v--~~~  135 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV--DPEK----------IGTK--------------IGGIPV--YHI  135 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC--Chhh----------cCCE--------------eCCeEE--cCH
Confidence            479999999999999998643 3456999999875  1111          0100              111111  110


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .+.+++ ....++|+|+.|+|.....+.+...+++|.+.|.--.|
T Consensus       136 ~~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p  179 (213)
T PRK05472        136 DELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP  179 (213)
T ss_pred             HHHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence            112221 11246999999999988888888889999876664444

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.23  E-value=0.0068  Score=47.55  Aligned_cols=91  Identities=21%  Similarity=0.269  Sum_probs=59.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +.||+|+|+|..|+.++...+....++++++.|.  +++.          .|              -.++|  ++++.  
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv--~~~~----------~G--------------~~i~g--ipV~~--   52 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDV--DPEK----------IG--------------KEIGG--IPVYG--   52 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEE--CTTT----------TT--------------SEETT--EEEES--
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEc--CCCc----------cC--------------cEECC--EEeec--
Confidence            4699999999999988765555556888888775  1110          01              11223  44452  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +.+++.=.. ++|+.+.|.|.....+.+.+++++|.|.++.-
T Consensus        53 ~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nf   93 (96)
T PF02629_consen   53 SMDELEEFI-EIDIAIITVPAEAAQEVADELVEAGIKGIVNF   93 (96)
T ss_dssp             SHHHHHHHC-TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEE
T ss_pred             cHHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEe
Confidence            111111001 48999999999999999999999999987643

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.17  E-value=0.027  Score=51.44  Aligned_cols=34  Identities=32%  Similarity=0.594  Sum_probs=30.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +.+||+|.|||.+|+.+++.|.+. .+++++|.|.
T Consensus        30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~   63 (227)
T cd01076          30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDS   63 (227)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence            457999999999999999999887 4999999886

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.04  E-value=0.014  Score=53.25  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=24.9

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC--CcE-EEEee
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD--DVE-LVAVN   37 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p--~~e-lv~i~   37 (341)
                      .++||+|+|+|.+|+.+++.+.+++  .++ ++..+
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~   38 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSN   38 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEEC
Confidence            3579999999999999999887653  354 44443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.03  E-value=0.011  Score=45.87  Aligned_cols=90  Identities=24%  Similarity=0.244  Sum_probs=50.7

Q ss_pred             eEEEEccCHHHHHHHHHHHcCC--CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            8 KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p--~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ||||+|+|.+|..+++-|.++.  .-++..++++  +.+...++.   ..++                     +.++.. 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~---~~~~---------------------~~~~~~-   53 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELA---KEYG---------------------VQATAD-   53 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHH---HHCT---------------------TEEESE-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHH---Hhhc---------------------cccccC-
Confidence            7999999999999999998874  2455555454  333222221   1111                     000100 


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHH--HhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAH--LKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~--l~~G~k~V~lS  127 (341)
                      +..+.   ....|+||.|.+...-.+.+..+  ...+.-.|.+.
T Consensus        54 ~~~~~---~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   54 DNEEA---AQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA   94 (96)
T ss_dssp             EHHHH---HHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred             ChHHh---hccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence            11111   12689999999998887777665  55666344443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.00  E-value=0.027  Score=55.18  Aligned_cols=111  Identities=20%  Similarity=0.209  Sum_probs=63.2

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC---cceE--ECCEEE
Q 019445            7 IKIGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTLL--FGEKPV   79 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~---~~l~--i~g~~i   79 (341)
                      .||+|+|+ |-||+..++.+.++| .|+|+++... .+.+.+..+.  ....+++.    -+.+.   ..|.  ..+..+
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~-~n~~~l~~q~--~~f~p~~v----~i~~~~~~~~l~~~l~~~~~   74 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG-KNVELLAEQA--REFRPKYV----VVADEEAAKELKEALAAAGI   74 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHH--HHhCCCEE----EEcCHHHHHHHHHhhccCCc
Confidence            58999998 999999999999887 6999999843 2332222211  11112211    01000   0000  001011


Q ss_pred             EEEecC-CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           80 AVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        80 ~v~~~~-~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                      .++... ...++ -...++|+|+.+.+.+...+..-+++++|.+ |.+
T Consensus        75 ~v~~G~~~~~~l-~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~-VaL  120 (385)
T PRK05447         75 EVLAGEEGLCEL-AALPEADVVVAAIVGAAGLLPTLAAIRAGKR-IAL  120 (385)
T ss_pred             eEEEChhHHHHH-hcCCCCCEEEEeCcCcccHHHHHHHHHCCCc-EEE
Confidence            122211 11111 0123789999999999888888889999964 444

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.94  E-value=0.0097  Score=58.33  Aligned_cols=98  Identities=23%  Similarity=0.328  Sum_probs=55.1

Q ss_pred             EEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCCC
Q 019445            9 IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPE   88 (341)
Q Consensus         9 V~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~~   88 (341)
                      |.|+|+|++|+.+++.|.+++.++-+.+.++  +.+....+..- -...++.                  .......|++
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r--~~~~~~~~~~~-~~~~~~~------------------~~~~d~~~~~   59 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR--NPEKAERLAEK-LLGDRVE------------------AVQVDVNDPE   59 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEES--SHHHHHHHHT---TTTTEE------------------EEE--TTTHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC--CHHHHHHHHhh-cccccee------------------EEEEecCCHH
Confidence            6899999999999999999987744455555  22222111100 0000111                  0011111222


Q ss_pred             CCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           89 EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        89 ~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .+.=-..+.|+|+.|+|.+.....++.+++.|+.-||.|
T Consensus        60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS
T ss_pred             HHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeeccc
Confidence            111002478999999999988889999999999888743

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02700 homoserine dehydrogenase family protein

Probab=95.88  E-value=0.013  Score=57.41  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=29.5

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCC--------CcEEEEeeCC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP   39 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p--------~~elv~i~~~   39 (341)
                      |++++|+|+|+|-||+.|+++|.+..        ++.+++|.+.
T Consensus         1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s   44 (377)
T PLN02700          1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDS   44 (377)
T ss_pred             CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECC
Confidence            46799999999999999999986532        3678888774

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.77  E-value=0.011  Score=51.22  Aligned_cols=30  Identities=33%  Similarity=0.451  Sum_probs=26.9

Q ss_pred             EEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            9 IGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         9 V~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |.|.|+ |++|+.+++.|.+++ .++.++...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~   31 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS   31 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEEEecC
Confidence            689999 999999999999988 898888754

...

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.75  E-value=0.0036  Score=56.63  Aligned_cols=95  Identities=24%  Similarity=0.259  Sum_probs=55.2

Q ss_pred             EEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            9 IGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         9 V~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      |.|.|+ |.+|+.+++.|.. +.+++.++... .+ +..+..|+  . .|    -        .+..       ..-.++
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~-~~-~~~~~~l~--~-~g----~--------~vv~-------~d~~~~   55 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRD-PS-SDRAQQLQ--A-LG----A--------EVVE-------ADYDDP   55 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESS-SH-HHHHHHHH--H-TT----T--------EEEE-------S-TT-H
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEec-cc-hhhhhhhh--c-cc----c--------eEee-------cccCCH
Confidence            689999 9999999999998 56898888764 21 11111111  0 00    0        0000       000122


Q ss_pred             CCCCccCCCccEEEecCCCcc------CHHHHHHHHhCCCcEEEecC
Q 019445           88 EEIPWAKTGAEYVVESTGVFT------DKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        88 ~~~~w~~~~~DvV~~at~~~~------s~~~~~~~l~~G~k~V~lSa  128 (341)
                      +.+.=...++|.||.+++...      ....+..+.++|+|.++.|.
T Consensus        56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss  102 (233)
T PF05368_consen   56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSS  102 (233)
T ss_dssp             HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred             HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEE
Confidence            222111359999999999542      23455667788999998764

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.72  E-value=0.038  Score=52.49  Aligned_cols=30  Identities=23%  Similarity=0.406  Sum_probs=26.2

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||.|.|+ |++|+.+++.|.++. .++.++..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R   32 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVR   32 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEc
Confidence            8999999 999999999999876 67777753

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=95.64  E-value=0.062  Score=47.02  Aligned_cols=33  Identities=15%  Similarity=0.045  Sum_probs=27.4

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .++.+-|+|+ |..|+.+++.+.+.|.|.-|.+-
T Consensus        17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i   50 (238)
T KOG4039|consen   17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAI   50 (238)
T ss_pred             hccceEEEeccccccHHHHHHHHhcccceeEEEE
Confidence            3468999999 99999999999999988544443

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.53  E-value=0.025  Score=52.44  Aligned_cols=34  Identities=26%  Similarity=0.339  Sum_probs=24.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~   39 (341)
                      |+||+|+|+|.+|..+++.|.+.. ....+.+.++
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r   36 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP   36 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence            468999999999999999887653 1223345554

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.53  E-value=0.072  Score=48.29  Aligned_cols=33  Identities=24%  Similarity=0.545  Sum_probs=29.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .+||+|.|||.+|+.+++.|.+.. ..+|+|.|.
T Consensus        23 g~~vaIqGfGnVG~~~a~~L~~~G-~~vV~vsD~   55 (217)
T cd05211          23 GLTVAVQGLGNVGWGLAKKLAEEG-GKVLAVSDP   55 (217)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC-CEEEEEEcC
Confidence            479999999999999999999874 788999986

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=95.35  E-value=0.087  Score=46.38  Aligned_cols=32  Identities=34%  Similarity=0.514  Sum_probs=27.7

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |||||+|+ |.+|.++++-+..+. -|+++|.-.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn   33 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRG-HEVTAIVRN   33 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCC-CeeEEEEeC
Confidence            48999999 999999999888886 688899753

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.33  E-value=0.065  Score=43.60  Aligned_cols=83  Identities=19%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             eEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            8 KIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         8 rV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +|||+|+    +..|+.+++.|.++. +++.+||-.            ++..                   .|.  +.+.
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~~G-~~v~~Vnp~------------~~~i-------------------~G~--~~y~   47 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKAAG-YEVYPVNPK------------GGEI-------------------LGI--KCYP   47 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHHTT--EEEEESTT------------CSEE-------------------TTE--E-BS
T ss_pred             EEEEEcccCCCCChHHHHHHHHHhCC-CEEEEECCC------------ceEE-------------------CcE--Eeec
Confidence            7999995    889999999999965 788899754            1111                   121  1222


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.++++   ..+|+++.++|.....+..+++.+.|++.+.+-..
T Consensus        48 --sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g   88 (116)
T PF13380_consen   48 --SLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG   88 (116)
T ss_dssp             --SGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred             --cccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence              122221   37899999999999999999999999998887543

>PRK09414 glutamate dehydrogenase; Provisional

Probab=95.27  E-value=0.11  Score=52.12  Aligned_cols=103  Identities=16%  Similarity=0.205  Sum_probs=60.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCC-----Chhhhhhhccccccc-CcccCceeeecCCcceEECCEEEE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI-----STDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~-----~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      .||+|-|||.+|+.+++.|.+.. ..|++|.|.+.     ++=....|+++-... +... +   ..+.    . +  ..
T Consensus       233 ~rVaIqGfGnVG~~~A~~L~~~G-akVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~-~---~~~~----~-~--~~  300 (445)
T PRK09414        233 KRVVVSGSGNVAIYAIEKAQQLG-AKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRIS-E---YAEE----F-G--AE  300 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchh-h---hhhh----c-C--Ce
Confidence            69999999999999999998875 89999988411     111122222221111 1111 0   0000    0 0  00


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCC-ccCHHHHHHHHhCCCcEEEe
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~-~~s~~~~~~~l~~G~k~V~l  126 (341)
                      .   .+++++ | ..++||.+.|+.. -.+.+.+.++.+.+||.|+=
T Consensus       301 ~---i~~~~i-~-~~d~DVliPaAl~n~It~~~a~~i~~~~akiIvE  342 (445)
T PRK09414        301 Y---LEGGSP-W-SVPCDIALPCATQNELDEEDAKTLIANGVKAVAE  342 (445)
T ss_pred             e---cCCccc-c-ccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEc
Confidence            1   123333 5 3589999999874 44677788887778876653

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.23  E-value=0.12  Score=49.43  Aligned_cols=52  Identities=19%  Similarity=0.230  Sum_probs=35.6

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD   53 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d   53 (341)
                      |.-+++.+|.|-|+ ||||..+++.|+.+.+ ++.+-.....+.+...||.+++
T Consensus         1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~   53 (327)
T KOG1502|consen    1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLE   53 (327)
T ss_pred             CCCCCCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcc
Confidence            44434579999999 9999999999999985 4444433224445555665554

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.97  E-value=0.059  Score=51.64  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=26.7

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |+++|  ||+|+|+|.+|..+.+.|..+. .++..++
T Consensus         1 ~~~~m--~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~   34 (328)
T PRK14618          1 MHHGM--RVAVLGAGAWGTALAVLAASKG-VPVRLWA   34 (328)
T ss_pred             CCCCC--eEEEECcCHHHHHHHHHHHHCC-CeEEEEe
Confidence            77754  8999999999999999998764 4554443

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=94.94  E-value=0.19  Score=46.70  Aligned_cols=103  Identities=17%  Similarity=0.275  Sum_probs=60.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCC--------ChhhhhhhcccccccCc-ccCceeeecCCcceEECCE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI--------STDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~--------~~~~~a~ll~~ds~~g~-~~~~~v~~~~~~~l~i~g~   77 (341)
                      .||+|-|||.+|+.+++.|.+.. ..+++|.|...        +.+.+..++.++...+. .. .   ...    .+.+ 
T Consensus        39 ~~vaIqGfGnVG~~~a~~L~e~G-akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~-~---~~~----~~~~-  108 (254)
T cd05313          39 KRVAISGSGNVAQYAAEKLLELG-AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVS-E---YAK----KYGT-  108 (254)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHH-H---Hhh----cCCC-
Confidence            69999999999999999998875 89999998521        11222222222221111 00 0   000    0001 


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEecCC-CccCHHHHHHHHhCCCcEEE
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVESTG-VFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~-~~~s~~~~~~~l~~G~k~V~  125 (341)
                       ....   +++++ | ..++||.+-|.- .-.+.+.++++.+.+||.|+
T Consensus       109 -a~~~---~~~~~-~-~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~  151 (254)
T cd05313         109 -AKYF---EGKKP-W-EVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVA  151 (254)
T ss_pred             -CEEe---CCcch-h-cCCCcEEEeccccccCCHHHHHHHHHcCCEEEE
Confidence             1111   34443 5 358999987754 55577888877777887665

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PLN02256 arogenate dehydrogenase

Probab=94.83  E-value=0.066  Score=51.06  Aligned_cols=33  Identities=33%  Similarity=0.706  Sum_probs=27.1

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .++||+|+|+|.+|+.+++.|.+.+ .++.++..
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G-~~V~~~d~   67 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQG-HTVLATSR   67 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCC-CEEEEEEC
Confidence            4579999999999999999998765 67776654

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.80  E-value=0.071  Score=50.29  Aligned_cols=34  Identities=24%  Similarity=0.496  Sum_probs=26.1

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      |+.. +.||||+|+|.+|+.++..++.+. ++++..
T Consensus         1 ~~~~-~~~V~ViGaG~mG~~iA~~~a~~G-~~V~l~   34 (286)
T PRK07819          1 MSDA-IQRVGVVGAGQMGAGIAEVCARAG-VDVLVF   34 (286)
T ss_pred             CCCC-ccEEEEEcccHHHHHHHHHHHhCC-CEEEEE
Confidence            4443 348999999999999999988775 565444

>PRK08818 prephenate dehydrogenase; Provisional

Probab=94.67  E-value=0.061  Score=52.67  Aligned_cols=77  Identities=22%  Similarity=0.293  Sum_probs=50.4

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +.||+|+|. |.||+.+.+.|.+....+|.++ |+ .           |..   +.                        
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~-D~-~-----------d~~---~~------------------------   43 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGH-DP-A-----------DPG---SL------------------------   43 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEE-cC-C-----------ccc---cC------------------------
Confidence            469999999 9999999999986434665544 22 0           100   00                        


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHH------hCCCcEEEe
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL------KGGAKKVVI  126 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l------~~G~k~V~l  126 (341)
                       ++++.   ..++|+||.|+|.....+..+++.      +.|+-+.|+
T Consensus        44 -~~~~~---v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~iVtDV   87 (370)
T PRK08818         44 -DPATL---LQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQLWLDV   87 (370)
T ss_pred             -CHHHH---hcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCeEEEEC
Confidence             11111   237899999999999888777654      456633443

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.63  E-value=0.12  Score=48.44  Aligned_cols=29  Identities=31%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ||+|+|.|.+|+.+.+.|.++. .++..+.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d   30 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVS   30 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCC-CEEEEEE
Confidence            7999999999999999998775 5665553

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=94.34  E-value=0.092  Score=52.40  Aligned_cols=113  Identities=15%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC---cceE--ECCE-
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTLL--FGEK-   77 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~---~~l~--i~g~-   77 (341)
                      +.||+|+|+ |-||...++++.+||+ |+++++... ...+.++...+  ...+++.    -+.+.   +.|.  ..+. 
T Consensus        57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag-~Ni~lL~~q~~--~f~p~~v----~v~d~~~~~~l~~~l~~~~  129 (454)
T PLN02696         57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAG-SNVTLLADQVR--KFKPKLV----AVRNESLVDELKEALADLD  129 (454)
T ss_pred             ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECC-CCHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHhhcCCC
Confidence            469999999 9999999999999875 999999765 33333222111  1111111    01000   0000  0000 


Q ss_pred             -EEEEEe-cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           78 -PVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        78 -~i~v~~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                       ...++. +....++- ...++|+|+.+..-+....-.-.++++|.+ |.|.
T Consensus       130 ~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaGK~-VALA  179 (454)
T PLN02696        130 DKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAGKD-IALA  179 (454)
T ss_pred             CCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCCCc-EEEe
Confidence             011221 11111110 123689999999988777777788999954 5554

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=94.31  E-value=0.11  Score=46.53  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=25.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |++++|.|+|.+|..|.+.+..-. .|++..++.
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag-~eV~igs~r   33 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAG-HEVIIGSSR   33 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCC-CeEEEecCC
Confidence            358999999999999999988754 466555443

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=94.10  E-value=0.13  Score=48.38  Aligned_cols=92  Identities=20%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +++|+|+|.|.||+.+.|.|.... .+.+...... ......+.                      .+.+-.. .  ...
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~-~~~~~~a~----------------------~lgv~d~-~--~~~   56 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRS-AATLKAAL----------------------ELGVIDE-L--TVA   56 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCc-HHHHHHHh----------------------hcCcccc-c--ccc
Confidence            469999999999999999998754 3444333221 11000000                      0101000 0  000


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHH---HhCCCcEEEec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAH---LKGGAKKVVIS  127 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~---l~~G~k~V~lS  127 (341)
                      ...+.    ..++|+||.|+|...+.+.+.++   ++.|+-+.|++
T Consensus        57 ~~~~~----~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~   98 (279)
T COG0287          57 GLAEA----AAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDVG   98 (279)
T ss_pred             hhhhh----cccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEecc
Confidence            00111    23679999999999888777654   45777555554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.07  E-value=0.16  Score=48.19  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=23.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +||+|+|+|.+|..+.+.|.+.. .++..+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g-~~V~~~   30 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNG-HDVTLW   30 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            48999999999999999998764 454333

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=94.07  E-value=0.096  Score=50.02  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||+|+|+|.+|+.+++.|..+. ..-+.+.++
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r  210 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANR  210 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence            68999999999999999998753 333455554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.02  E-value=0.12  Score=49.08  Aligned_cols=30  Identities=23%  Similarity=0.316  Sum_probs=25.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .||+|+|+|.+|+.+++.|.... .++..++
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~  182 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALG-ANVTVGA  182 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CEEEEEE
Confidence            58999999999999999998876 5655553

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.87  E-value=0.28  Score=46.74  Aligned_cols=31  Identities=23%  Similarity=0.392  Sum_probs=24.2

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +++||+|+|+|.+|..+...|.+.. .++..+
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~   34 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAG-FDVHFL   34 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCC-CeEEEE
Confidence            4579999999999999999888753 344444

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.86  E-value=0.27  Score=47.13  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=24.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |+||+|+|+|.+|..+...|.++. .++..+.
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~   32 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAG-ADVTLIG   32 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcC-CcEEEEe
Confidence            368999999999999999998875 4555543

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.84  E-value=0.22  Score=41.94  Aligned_cols=30  Identities=30%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEe
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAV   36 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~-elv~i   36 (341)
                      +||+|+|+ |.+|..++-.|...+-. ||+-+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~   32 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLI   32 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEe
Confidence            48999999 99999999988877643 44444

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.64  E-value=0.17  Score=42.54  Aligned_cols=33  Identities=21%  Similarity=0.179  Sum_probs=25.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ..||+|+|+|.+|+.+++.|.++. .+.+.+.++
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r   51 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNR   51 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcC
Confidence            468999999999999999998875 333455554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.49  E-value=0.29  Score=46.71  Aligned_cols=31  Identities=32%  Similarity=0.517  Sum_probs=25.3

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~-elv~i~   37 (341)
                      +||+|+|+ |++|..++..|...+.. +|+.+.
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd   33 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLIS   33 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEE
Confidence            48999999 99999999999987643 566553

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.45  E-value=0.24  Score=42.23  Aligned_cols=88  Identities=13%  Similarity=0.145  Sum_probs=47.4

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCc-ccCceeeecCCcceEECCEEEEEEecCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~-~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      ||+|+|+|..|..++..|..+. .++ .+-.+  +.+....+-+... ... ++ + +      .+..   .+.+.  .|
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V-~l~~~--~~~~~~~i~~~~~-n~~~~~-~-~------~l~~---~i~~t--~d   62 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEV-TLWGR--DEEQIEEINETRQ-NPKYLP-G-I------KLPE---NIKAT--TD   62 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEE-EEETS--CHHHHHHHHHHTS-ETTTST-T-S------BEET---TEEEE--SS
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEE-EEEec--cHHHHHHHHHhCC-CCCCCC-C-c------ccCc---ccccc--cC
Confidence            7999999999999999999887 333 44444  2232222211111 111 11 1 1      1111   13232  24


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHH
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAH  116 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~  116 (341)
                      +++.   ..++|+++.|+|.+..++.++++
T Consensus        63 l~~a---~~~ad~IiiavPs~~~~~~~~~l   89 (157)
T PF01210_consen   63 LEEA---LEDADIIIIAVPSQAHREVLEQL   89 (157)
T ss_dssp             HHHH---HTT-SEEEE-S-GGGHHHHHHHH
T ss_pred             HHHH---hCcccEEEecccHHHHHHHHHHH
Confidence            4332   24889999999999887777664

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.31  E-value=0.14  Score=47.38  Aligned_cols=32  Identities=31%  Similarity=0.367  Sum_probs=24.3

Q ss_pred             eEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCC
Q 019445            8 KIGINGFGRIGRLVARVALQRD-DVELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~   39 (341)
                      ||||+|+|.+|+.+++.|.+.. ..+.+.+.++
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r   34 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR   34 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECC
Confidence            7999999999999999988754 2333455554

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.29  E-value=0.32  Score=46.12  Aligned_cols=30  Identities=27%  Similarity=0.370  Sum_probs=23.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +||+|+|+|.+|..++..+..++..|++-+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~   32 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLF   32 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            599999999999999998887652255444

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=93.20  E-value=0.18  Score=54.46  Aligned_cols=35  Identities=11%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC--------CcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p--------~~elv~i~~~   39 (341)
                      ++++|+|+|+|-+|+.++++|.++.        ++++++|.+.
T Consensus       464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s  506 (819)
T PRK09436        464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS  506 (819)
T ss_pred             ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence            4689999999999999999997542        4778888764

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.14  E-value=0.36  Score=44.58  Aligned_cols=106  Identities=13%  Similarity=0.051  Sum_probs=55.4

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC---------C-CcEEEEeeCC-CCChhhhhhhcccccccCcccCceeeecCCcce-E
Q 019445            6 KIKIGINGFGRIGRLVARVALQR---------D-DVELVAVNDP-FISTDYMTYMFKYDSVHGQWKHNELKVKDEKTL-L   73 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~---------p-~~elv~i~~~-~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l-~   73 (341)
                      ..||.|+|+|-+|.++++.|...         + .++|+-+ |. ..+...+...+-+.+.-|+.+ .++-.+   .+ .
T Consensus        11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lv-D~D~Ve~sNLnRQlf~~~dVG~~K-a~v~~~---ri~~   85 (244)
T TIGR03736        11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVY-DDDTVSEANVGRQAFYPADVGQNK-AIVLVN---RLNQ   85 (244)
T ss_pred             CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEE-CCCEEccchhhcccCChhHCCcHH-HHHHHH---HHHh
Confidence            57999999999999999999753         2 2344433 43 122222222222233345443 222110   01 0


Q ss_pred             ECCEEEEEEe-cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhC
Q 019445           74 FGEKPVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKG  119 (341)
Q Consensus        74 i~g~~i~v~~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~  119 (341)
                      +++..+.... ..+++..   ..++|+|++|+....++....+.+..
T Consensus        86 ~~~~~i~a~~~~~~~~~~---~~~~DiVi~avDn~~aR~~l~~~~~~  129 (244)
T TIGR03736        86 AMGTDWTAHPERVERSST---LHRPDIVIGCVDNRAARLAILRAFEG  129 (244)
T ss_pred             ccCceEEEEEeeeCchhh---hcCCCEEEECCCCHHHHHHHHHHHHH
Confidence            1122222221 1122221   23789999999999988776555433

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK08507 prephenate dehydrogenase; Validated

Probab=93.02  E-value=0.31  Score=45.51  Aligned_cols=29  Identities=24%  Similarity=0.366  Sum_probs=23.0

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCC-cEEEEe
Q 019445            8 KIGINGFGRIGRLVARVALQRDD-VELVAV   36 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~-~elv~i   36 (341)
                      ||+|+|+|.+|+.+.+.|.+... .++...
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~   31 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGY   31 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEE
Confidence            79999999999999999987642 355443

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.00  E-value=0.15  Score=48.14  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|+|+|+|++|+.+++.|..+. .++...+
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G-~~V~v~~  181 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALG-ARVFVGA  181 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCC-CEEEEEe
Confidence            58999999999999999998886 5665443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=92.90  E-value=0.099  Score=56.30  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=29.3

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC---------CcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD---------DVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p---------~~elv~i~~~   39 (341)
                      ++++|+|+|+|-+|+.++|+|.++.         ++++++|.+.
T Consensus       457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s  500 (810)
T PRK09466        457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDS  500 (810)
T ss_pred             ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeC
Confidence            4689999999999999999987542         4788999764

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=92.89  E-value=0.4  Score=47.51  Aligned_cols=92  Identities=21%  Similarity=0.256  Sum_probs=53.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      .||-|+|+|-+|..+++.|.+++--+| .|..+.... +.++..+.                        +..++ +.+.
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~g~~~i-~IaNRT~erA~~La~~~~------------------------~~~~~-l~el  232 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEKGVKKI-TIANRTLERAEELAKKLG------------------------AEAVA-LEEL  232 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCCEE-EEEcCCHHHHHHHHHHhC------------------------Ceeec-HHHH
Confidence            579999999999999999999974444 444442222 33332211                        11111 1110


Q ss_pred             CCCCCCccCCCccEEEecCCCcc---CHHHHHHHHhCCCc--EEEecCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFT---DKDKAAAHLKGGAK--KVVISAP  129 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~---s~~~~~~~l~~G~k--~V~lSa~  129 (341)
                       ++.    ...+|+||.||+...   +.+..+..++.-.+  .|||+.|
T Consensus       233 -~~~----l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         233 -LEA----LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             -HHh----hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence             122    247899999988544   45666655543322  4777776

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=92.89  E-value=0.19  Score=46.69  Aligned_cols=23  Identities=26%  Similarity=0.557  Sum_probs=20.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      +||+|+|+|.+|..+++.|.+..
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~   26 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSN   26 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCC
Confidence            47999999999999999998764

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.85  E-value=0.21  Score=48.98  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=22.3

Q ss_pred             ceeEEEEc-cCHHHHHHHHHHHcCCCcEE
Q 019445            6 KIKIGING-FGRIGRLVARVALQRDDVEL   33 (341)
Q Consensus         6 ~irV~I~G-~G~iG~~llr~l~~~p~~el   33 (341)
                      +.||+|+| .|.+|+.+.+.|..+. .++
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G-~~V  125 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSG-YQV  125 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCC-CeE
Confidence            36899999 6999999999998764 443

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=92.73  E-value=0.38  Score=48.33  Aligned_cols=87  Identities=17%  Similarity=0.195  Sum_probs=60.5

Q ss_pred             CceeEEEEcc----CHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            5 KKIKIGINGF----GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         5 ~~irV~I~G~----G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      ...+|+|+|+    |..|+.+++.|.++.. =+|..||-.            ++..+                   |  +
T Consensus         6 ~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~------------~~~i~-------------------G--~   52 (447)
T TIGR02717         6 NPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPK------------AGEIL-------------------G--V   52 (447)
T ss_pred             CCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCC------------CCccC-------------------C--c
Confidence            3468999999    7789999999998762 267777632            11111                   1  1


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE-ecCC
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV-ISAP  129 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~-lSa~  129 (341)
                      +++.  +.++++   ..+|+++.|+|.....+.++++.+.|+|.++ +|+-
T Consensus        53 ~~~~--sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi~s~g   98 (447)
T TIGR02717        53 KAYP--SVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVVITAG   98 (447)
T ss_pred             cccC--CHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            1221  233343   3689999999999999999999999999775 4543

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=92.70  E-value=0.17  Score=44.21  Aligned_cols=32  Identities=34%  Similarity=0.589  Sum_probs=26.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .+|||+|+|.||+++++.+..-. +++.+.+..
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~   68 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRS   68 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred             CEEEEEEEcCCcCeEeeeeecCC-ceeEEeccc
Confidence            68999999999999999998775 787777543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.67  E-value=0.33  Score=45.05  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=24.5

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +|.|.|+ |++|+.+++.|.+.. .++.++.-
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R   31 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAAS-VPFLVASR   31 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeC
Confidence            4789999 999999999998864 56666653

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.63  E-value=0.32  Score=45.57  Aligned_cols=32  Identities=25%  Similarity=0.494  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCC---cEEEEeeC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDD---VELVAVND   38 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~---~elv~i~~   38 (341)
                      +||+|+|+|.+|..+++.|.+...   .++..++.
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r   36 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS   36 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence            489999999999999999886542   35555543

>PLN00016 RNA-binding protein; Provisional

Probab=92.47  E-value=0.38  Score=46.93  Aligned_cols=32  Identities=25%  Similarity=0.210  Sum_probs=27.2

Q ss_pred             ceeEEEE----cc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGIN----GF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~----G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +.||.|.    |+ |++|+.|++.|.+.. .++.++..
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R   88 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTR   88 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEec
Confidence            4689999    99 999999999998875 57777754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=92.42  E-value=0.36  Score=43.89  Aligned_cols=100  Identities=26%  Similarity=0.251  Sum_probs=54.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      +++.|+|+|+.|+.++|.|.+.. .+++.|-..   .+.....+.  ..   +. ..       .+..++....+     
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d---~~~~~~~~~--~~---~~-~~-------~v~gd~t~~~~-----   58 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRD---EERVEEFLA--DE---LD-TH-------VVIGDATDEDV-----   58 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcC---HHHHHHHhh--hh---cc-eE-------EEEecCCCHHH-----
Confidence            48999999999999999999876 466666532   222111011  00   00 00       01111111111     


Q ss_pred             CCCCCccCCCccEEEecCCCccC-HHHHHHHHh-CCCcEEEecCCC
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTD-KDKAAAHLK-GGAKKVVISAPS  130 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s-~~~~~~~l~-~G~k~V~lSa~~  130 (341)
                      .++..  ..++|+++-+|+.... .-.+..+++ -|.+.++.-+.+
T Consensus        59 L~~ag--i~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~  102 (225)
T COG0569          59 LEEAG--IDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARN  102 (225)
T ss_pred             HHhcC--CCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecC
Confidence            11221  2478999999998543 334444444 588888766554

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.32  E-value=0.29  Score=45.77  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      +||+++|+|.+|..+++.|.++.
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g   26 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHAN   26 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCC
Confidence            38999999999999999998764

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=92.27  E-value=0.45  Score=45.72  Aligned_cols=38  Identities=29%  Similarity=0.342  Sum_probs=27.0

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |.+-.+.||+|+|+|.+|..++..+..+.-.+ +.+.|.
T Consensus         1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi   38 (321)
T PTZ00082          1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI   38 (321)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence            33333468999999999999988877665346 455554

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=92.22  E-value=0.18  Score=47.06  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=31.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .++|-|.|+|++|++.+|.|..+|.+|||+.-..
T Consensus         2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~   35 (350)
T COG3804           2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVH   35 (350)
T ss_pred             CceeEEeccchHHHHHHHHHHcCCCCceEEEEec
Confidence            4789999999999999999999999999998776

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=92.20  E-value=1.1  Score=45.05  Aligned_cols=105  Identities=15%  Similarity=0.291  Sum_probs=62.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhccccccc-CcccCceeeecCCcceEECCE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      .||+|-|+|.+|..+++.|.+.. ..+++|.|..        .+.+.+..++.+-... |... .   ..+   . ..+ 
T Consensus       238 k~VaVqG~GnVg~~aa~~L~e~G-akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~-~---~~~---~-~~~-  307 (454)
T PTZ00079        238 KTVVVSGSGNVAQYAVEKLLQLG-AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLK-E---YAK---H-SST-  307 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHH-h---hhh---c-cCC-
Confidence            69999999999999999998875 8999999873        1122222222221111 1111 0   000   0 001 


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEecC-CCccCHHHHHHHHhCCCcEEEec
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~at-~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                       ....   +.++ .|. .++||.+-|. +...+.+.+..+++.|||.|+=.
T Consensus       308 -a~~~---~~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~Eg  352 (454)
T PTZ00079        308 -AKYV---PGKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEG  352 (454)
T ss_pred             -cEEe---CCcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeEEEec
Confidence             1111   2233 374 5899998764 46668888888888999866533

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.18  E-value=0.92  Score=43.45  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=24.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i   36 (341)
                      ..||+|+|+|.+|..++-.|...+-+ ||+-+
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~   37 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVII   37 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            47999999999999999988887744 44433

>PLN02477 glutamate dehydrogenase

Probab=92.07  E-value=1.5  Score=43.64  Aligned_cols=32  Identities=31%  Similarity=0.526  Sum_probs=29.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||+|-|||.+|+.++++|.+.. ..|++|.|.
T Consensus       207 ~~VaIqGfGnVG~~~A~~L~e~G-akVVaVsD~  238 (410)
T PLN02477        207 QTFVIQGFGNVGSWAAQLIHEKG-GKIVAVSDI  238 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence            68999999999999999998875 899999986

>PRK07680 late competence protein ComER; Validated

Probab=92.02  E-value=0.24  Score=46.23  Aligned_cols=32  Identities=22%  Similarity=0.484  Sum_probs=24.1

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCc--EEEEeeCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDV--ELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~--elv~i~~~   39 (341)
                      ||+|+|+|.+|..+++.|.+...+  +-+.+.++
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r   35 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR   35 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence            799999999999999998876422  22355554

>PRK08618 ornithine cyclodeaminase; Validated

Probab=92.01  E-value=0.3  Score=46.91  Aligned_cols=94  Identities=18%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      .+++|+|+|.+|+..++.+.....++.+.|.++..+. +.++..++  .   ++.                ..+..+.  
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~--~---~~~----------------~~~~~~~--  184 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQ--S---KFN----------------TEIYVVN--  184 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHH--H---hcC----------------CcEEEeC--
Confidence            5899999999999999888765568888888763221 11111110  0   000                0111121  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                      +.++.   ..++|+|+.|||.... ... ..++.|+.+.-+.+
T Consensus       185 ~~~~~---~~~aDiVi~aT~s~~p-~i~-~~l~~G~hV~~iGs  222 (325)
T PRK08618        185 SADEA---IEEADIIVTVTNAKTP-VFS-EKLKKGVHINAVGS  222 (325)
T ss_pred             CHHHH---HhcCCEEEEccCCCCc-chH-HhcCCCcEEEecCC
Confidence            22221   2478999999998743 344 67788885444444

>PLN02712 arogenate dehydrogenase

Probab=91.98  E-value=0.39  Score=50.77  Aligned_cols=32  Identities=31%  Similarity=0.646  Sum_probs=26.3

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +++||||+|+|.+|+.+++.|.+.. .+|++++
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G-~~V~~~d  399 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQG-HTVLAYS  399 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCc-CEEEEEE
Confidence            3579999999999999999998765 5776554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.96  E-value=0.29  Score=46.53  Aligned_cols=30  Identities=23%  Similarity=0.199  Sum_probs=24.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+||+|+|+|.+|..+.+.|.... .++...
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G-~~V~~~   33 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANG-HRVRVW   33 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCC-CEEEEE
Confidence            468999999999999999998765 455433

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=91.91  E-value=0.34  Score=46.52  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=54.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +||+|+|+|..|-.|...|.++. ++.+-+ .+    .+.... +..+....+|- ..+..+.         .+  ....
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~-r~----~~~~~~-i~~~~~N~~yL-p~i~lp~---------~l--~at~   63 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWG-RD----EEIVAE-INETRENPKYL-PGILLPP---------NL--KATT   63 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEe-cC----HHHHHH-HHhcCcCcccc-CCccCCc---------cc--cccc
Confidence            58999999999999999998874 343322 22    121111 11111122222 1111111         11  1112


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHH---HHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAA---HLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~---~l~~G~k~V~lS  127 (341)
                      |.++.   ..++|+++.++|+..-++.+.+   ++..+++.|.+|
T Consensus        64 Dl~~a---~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          64 DLAEA---LDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             CHHHH---HhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence            33332   2469999999999888777765   345566444433

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.81  E-value=0.33  Score=48.29  Aligned_cols=31  Identities=13%  Similarity=0.302  Sum_probs=24.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .+|+|+|+|.+|+.+++.+.... .+++. .+.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~G-a~ViV-~d~  233 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQG-ARVIV-TEV  233 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEE-EEC
Confidence            48999999999999999988775 56544 443

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.69  E-value=0.39  Score=44.95  Aligned_cols=23  Identities=22%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      +||+++|+|.+|..+++.|.+..
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g   25 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKN   25 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCC
Confidence            58999999999999999998754

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=91.49  E-value=0.4  Score=46.49  Aligned_cols=101  Identities=21%  Similarity=0.218  Sum_probs=53.6

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      +|.|+|+|.||...+.++...+--+++.+ |.  +.+.++...++..       .        ...++...-... . ..
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~-d~--~~~Rl~~A~~~~g-------~--------~~~~~~~~~~~~-~-~~  230 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVV-DR--SPERLELAKEAGG-------A--------DVVVNPSEDDAG-A-EI  230 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEe-CC--CHHHHHHHHHhCC-------C--------eEeecCccccHH-H-HH
Confidence            79999999999988777776665566555 54  2222211111000       0        111110000000 0 00


Q ss_pred             CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .++.. -.++|+||||+|...+.+.+-.+++.|-+++.++-+
T Consensus       231 ~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         231 LELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             HHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence            01100 137999999999766667777777777666665533

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=91.49  E-value=0.83  Score=43.61  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=22.7

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445            8 KIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~-elv~i   36 (341)
                      ||+|+|+|.+|..++-+|..++-+ ||+-+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~   30 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLI   30 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            799999999999998888877644 44433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02688 pyrroline-5-carboxylate reductase

Probab=90.93  E-value=0.6  Score=43.14  Aligned_cols=33  Identities=18%  Similarity=0.414  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCC---cEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDD---VELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~---~elv~i~~~   39 (341)
                      +||+++|+|.+|..+++.|.+...   .+++..+++
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r   36 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS   36 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence            379999999999999999887542   255544344

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.91  E-value=0.71  Score=44.96  Aligned_cols=27  Identities=30%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             eEEEEccCHHHHHHHHHHHcCC-CcEEE
Q 019445            8 KIGINGFGRIGRLVARVALQRD-DVELV   34 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p-~~elv   34 (341)
                      ||+|+|+|.||+.+.+.|..+. ++.+.
T Consensus         2 ~I~iIG~GliG~siA~~L~~~G~~v~i~   29 (359)
T PRK06545          2 TVLIVGLGLIGGSLALAIKAAGPDVFII   29 (359)
T ss_pred             eEEEEEeCHHHHHHHHHHHhcCCCeEEE
Confidence            7999999999999999998764 34433

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.84  E-value=0.4  Score=39.88  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=25.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||.|+|+|-+||.++..|..+. ++-+.|.++
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g-~~~i~i~nR   44 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALG-AKEITIVNR   44 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTT-SSEEEEEES
T ss_pred             CEEEEECCHHHHHHHHHHHHHcC-CCEEEEEEC
Confidence            68999999999999999999885 543344444

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08605 D-lactate dehydrogenase; Validated

Probab=90.80  E-value=0.59  Score=45.10  Aligned_cols=30  Identities=33%  Similarity=0.522  Sum_probs=23.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ++|||+|+|.||+.+++.|...-.+++.+.
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~  176 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAY  176 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence            589999999999999999843223666554

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=90.77  E-value=0.47  Score=39.41  Aligned_cols=109  Identities=21%  Similarity=0.273  Sum_probs=56.7

Q ss_pred             EEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC-------cceEECCEEE
Q 019445            9 IGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE-------KTLLFGEKPV   79 (341)
Q Consensus         9 V~I~G~-G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~-------~~l~i~g~~i   79 (341)
                      |+|.|+ |-||...++.+.+|| +|+|+++... ...+.+..+.+  ...+++.    -..+.       ..+...+..+
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~-~n~~~L~~q~~--~f~p~~v----~i~~~~~~~~l~~~~~~~~~~~   73 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG-SNIEKLAEQAR--EFKPKYV----VIADEEAYEELKKALPSKGPGI   73 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES-STHHHHHHHHH--HHT-SEE----EESSHHHHHHHHHHHHHTTSSS
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC-CCHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHHhhhcCCCC
Confidence            689999 999999999999998 6999999875 34433332211  1112211    00000       0000000111


Q ss_pred             EEEecC-CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           80 AVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        80 ~v~~~~-~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                      .++... ...++- ...++|+|+.+..-+...+-.-.++++|.+ +-|
T Consensus        74 ~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~-iaL  119 (129)
T PF02670_consen   74 EVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAGKD-IAL  119 (129)
T ss_dssp             EEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTTSE-EEE
T ss_pred             EEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCCCe-EEE
Confidence            222100 011110 013688888888888777777778888853 444

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.63  E-value=1.5  Score=41.95  Aligned_cols=32  Identities=38%  Similarity=0.471  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||+|+|+|.+|..+..++..++-.+ +.+.|.
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di   37 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGD-VVLYDV   37 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence            59999999999999998887765335 344444

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=90.59  E-value=0.39  Score=41.21  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=23.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |+|||++|+|.+|+.+++.|.++. +++.. .++
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g-~~v~~-~d~   32 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAG-YEVTV-YDR   32 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTT-TEEEE-EES
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcC-CeEEe-ecc
Confidence            369999999999999999999875 66644 444

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK06046 alanine dehydrogenase; Validated

Probab=90.42  E-value=0.61  Score=44.83  Aligned_cols=34  Identities=29%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ..+|||+|+|..|+..++.+...+.++.+.|.++
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r  162 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR  162 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC
Confidence            4689999999999999999988788999999987

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=90.38  E-value=0.42  Score=45.99  Aligned_cols=35  Identities=26%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF   40 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~   40 (341)
                      ..++||+|+|..|+..++.+.....++-+.|.+++
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~  162 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT  162 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC
Confidence            46899999999999999998877678888888873

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.26  E-value=0.68  Score=45.32  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC
Q 019445            6 KIKIGINGFGRIGRLVARVALQR   28 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~   28 (341)
                      ++||+|+|+|..|-.+...|.++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n   33 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGEN   33 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhc
Confidence            46899999999999999999865

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=90.10  E-value=0.55  Score=39.15  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             eEEEEccCHHHHHHHHHHHcCC
Q 019445            8 KIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p   29 (341)
                      ||.|+|+|.+|.++++.|....
T Consensus         1 ~VliiG~GglGs~ia~~L~~~G   22 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSG   22 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC
Confidence            6899999999999999998765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=90.09  E-value=1.3  Score=41.45  Aligned_cols=29  Identities=34%  Similarity=0.425  Sum_probs=23.4

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ||+|+|+|.+|..+...|.+.. .++..+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~   30 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG-HDVTLVA   30 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            7999999999999999988764 4555554

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=90.06  E-value=1.7  Score=43.68  Aligned_cols=90  Identities=19%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      .+||.|+|.|..|+.++|.|.++. .++ .++|.........       ..+...       .  .       +.+....
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G-~~v-~v~D~~~~~~~~~-------~~~~~~-------~--~-------i~~~~g~   61 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLG-AEV-TVSDDRPAPEGLA-------AQPLLL-------E--G-------IEVELGS   61 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCC-CeE-EEEcCCCCccchh-------hhhhhc-------c--C-------ceeecCc
Confidence            579999999999999999999876 444 4555322211000       000000       0  0       1111111


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK  123 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~  123 (341)
                      .+. .+|  .++|+|+.+=|..-+...+.++.++|+++
T Consensus        62 ~~~-~~~--~~~d~vV~SPGi~~~~p~v~~A~~~gi~i   96 (448)
T COG0771          62 HDD-EDL--AEFDLVVKSPGIPPTHPLVEAAKAAGIEI   96 (448)
T ss_pred             cch-hcc--ccCCEEEECCCCCCCCHHHHHHHHcCCcE
Confidence            122 333  48899999999888888889999999863

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=89.96  E-value=0.65  Score=41.83  Aligned_cols=28  Identities=21%  Similarity=0.250  Sum_probs=22.4

Q ss_pred             eEEEEc-cCHHHHHHHHHHHcCCCcEEEEe
Q 019445            8 KIGING-FGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         8 rV~I~G-~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ||+|+| +|.+|..+.+.|.+.. .++...
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~   30 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIG   30 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEE
Confidence            799998 6999999999998765 455433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=89.85  E-value=0.47  Score=43.79  Aligned_cols=106  Identities=21%  Similarity=0.308  Sum_probs=60.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC-----CChhhhhhhcccccccCc-ccCceeeecCCcceEECCEEEE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF-----ISTDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~-----~~~~~~a~ll~~ds~~g~-~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      .||+|-|||.+|+.+++.|.+.. ..+++|.|..     .++-....|+.+-..++. +. .   .+.  . ..++  ..
T Consensus        33 ~~v~IqGfG~VG~~~a~~l~~~G-a~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~-~---~~~--~-~~~~--~~  102 (244)
T PF00208_consen   33 KRVAIQGFGNVGSHAARFLAELG-AKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVD-D---YPL--E-SPDG--AE  102 (244)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHTT-EEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHST-T---GTH--T-CSST--SE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCceEEEcCCCchHHHHHHHHHHhCCccc-c---ccc--c-cccc--ee
Confidence            68999999999999999999985 8999997752     112122222222111111 11 0   000  0 0000  01


Q ss_pred             EEecCCCC-CCCccCCCccEEEecC-CCccCHHHHHHHHhCCCcEEEec
Q 019445           81 VFGFRNPE-EIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        81 v~~~~~~~-~~~w~~~~~DvV~~at-~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .+   +.+ ++ | ..++||.+-|. +.-.+.+.++..++.|+|.|+=.
T Consensus       103 ~~---~~~~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIveg  146 (244)
T PF00208_consen  103 YI---PNDDEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEG  146 (244)
T ss_dssp             EE---CHHCHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEES
T ss_pred             Ee---cccccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeC
Confidence            11   111 22 4 35899999986 56667788886778889877643

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=89.78  E-value=0.64  Score=46.28  Aligned_cols=31  Identities=29%  Similarity=0.399  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|+|+|+|.+|+.+++.|..++-.+++.++
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~  211 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRKGVGKILIAN  211 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCEEEEEe
Confidence            5899999999999999999887523444443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=89.62  E-value=0.59  Score=41.70  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=18.4

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcC
Q 019445            7 IKIGINGF-GRIGRLVARVALQR   28 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~   28 (341)
                      +||+|+|. |.+|+.+.+.+.+.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~   23 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDN   23 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhC
Confidence            38999999 99999998876543

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=89.54  E-value=2.9  Score=40.04  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      +||+|+|+|.+|..++-+|.+.+
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~   23 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQG   23 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhccc
Confidence            48999999999999998887665

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=89.36  E-value=1.2  Score=41.77  Aligned_cols=29  Identities=17%  Similarity=0.368  Sum_probs=22.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +||+|+|+|.+|..+...|.++. .++..+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g-~~V~~~   29 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAG-RDVTFL   29 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CceEEE
Confidence            37999999999999999998764 344444

>PLN00203 glutamyl-tRNA reductase

Probab=89.32  E-value=0.81  Score=46.89  Aligned_cols=32  Identities=22%  Similarity=0.502  Sum_probs=24.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ..+|+|+|+|.+|+.+++.|..++--++..++
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n  297 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN  297 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            46899999999999999999887622444443

>PRK14031 glutamate dehydrogenase; Provisional

Probab=89.09  E-value=2.4  Score=42.56  Aligned_cols=102  Identities=16%  Similarity=0.309  Sum_probs=58.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhcccccc-cCcccCceeeecCCcceEECCE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSV-HGQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~ds~-~g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      .||+|-|||.+|...++.|.+.. ..|++|.|..        .+.+.+.|+..+... .++.. +   ...  .  . + 
T Consensus       229 ~rVaVQGfGNVG~~aA~~L~e~G-AkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~-~---~~~--~--~-g-  297 (444)
T PRK14031        229 KVCLVSGSGNVAQYTAEKVLELG-GKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIR-E---YAE--K--Y-G-  297 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchh-h---hHh--h--c-C-
Confidence            69999999999999999998875 8999998841        112222111111110 11111 0   000  0  0 1 


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEecCC-CccCHHHHHHHHhCCCcEEE
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVESTG-VFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~-~~~s~~~~~~~l~~G~k~V~  125 (341)
                       ....   +.++ .|. .++|+.|-|.- ...+.+.++++...|++.|.
T Consensus       298 -a~~i---~~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~  340 (444)
T PRK14031        298 -CKYV---EGAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVIAVS  340 (444)
T ss_pred             -CEEc---CCcc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCeEEE
Confidence             1111   2233 353 58999987755 44688888888777885443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=89.04  E-value=2.7  Score=35.94  Aligned_cols=29  Identities=21%  Similarity=0.055  Sum_probs=24.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .||-|+|.|.+|...++.|++.. .+++-|
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~g-a~V~VI   42 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTG-AFVTVV   42 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            68999999999999999998764 455555

>PRK06487 glycerate dehydrogenase; Provisional

Probab=88.94  E-value=0.52  Score=45.15  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=25.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||++++|.+.... +++.+..
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~fg-m~V~~~~  178 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAFG-MRVLIGQ  178 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCC-CEEEEEC
Confidence            58999999999999999998764 7776653

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=88.85  E-value=0.84  Score=45.53  Aligned_cols=32  Identities=28%  Similarity=0.452  Sum_probs=24.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .+|+|+|+|.+|+.+++.|...+ ++-+.+.++
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G-~~~V~v~~r  214 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKG-VRKITVANR  214 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CCeEEEEeC
Confidence            58999999999999999998765 432344444

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=88.81  E-value=0.53  Score=44.97  Aligned_cols=30  Identities=37%  Similarity=0.516  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|+||++++|.+..-. +++.+..
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fg-m~V~~~d  175 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFG-AKVVYYS  175 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcC-CEEEEEC
Confidence            68999999999999999997664 7776653

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=88.80  E-value=1.2  Score=42.57  Aligned_cols=30  Identities=33%  Similarity=0.434  Sum_probs=23.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i   36 (341)
                      .||+|+|+|.+|..++-.|...+-. ||+-+
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~Li   34 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLV   34 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            5999999999999998888776533 45444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=88.50  E-value=0.93  Score=45.26  Aligned_cols=29  Identities=14%  Similarity=0.297  Sum_probs=23.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|+|+|+|.+|+.+++.+.... ++++.+
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~G-a~ViV~  241 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGLG-ARVIVT  241 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            48999999999999999998775 565443

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=88.49  E-value=1.8  Score=37.61  Aligned_cols=30  Identities=20%  Similarity=0.389  Sum_probs=22.9

Q ss_pred             eeEEEEccCH-HHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGR-IGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~-iG~~llr~l~~~p~~elv~i~   37 (341)
                      .||.|+|+|. +|..+++.|.++. .++..++
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~   75 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRN-ATVTVCH   75 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCC-CEEEEEE
Confidence            6899999986 5888999998875 4544443

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14030 glutamate dehydrogenase; Provisional

Probab=88.49  E-value=3.1  Score=41.74  Aligned_cols=105  Identities=19%  Similarity=0.295  Sum_probs=63.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~   78 (341)
                      .||+|-|||.+|..+++.|.+.. ..|++|.|..        .+.+.+.+|+.+-..++... ..  ...    .+.+. 
T Consensus       229 ~~vaIQGfGnVG~~aA~~L~e~G-akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~-~~--~~~----~~~ga-  299 (445)
T PRK14030        229 KTVAISGFGNVAWGAATKATELG-AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIV-AP--YAE----KFPGS-  299 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccH-HH--HHh----cCCCC-
Confidence            69999999999999999998875 8999987752        12222333444332222110 00  000    01111 


Q ss_pred             EEEEecCCCCCCCccCCCccEEEec-CCCccCHHHHHHHHhCCCcEEEe
Q 019445           79 VAVFGFRNPEEIPWAKTGAEYVVES-TGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        79 i~v~~~~~~~~~~w~~~~~DvV~~a-t~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                       ...   +.+++ |. .++||.+-| ++...+.+.++++.+.+||.|+=
T Consensus       300 -~~i---~~~~~-~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~E  342 (445)
T PRK14030        300 -TFF---AGKKP-WE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAE  342 (445)
T ss_pred             -EEc---CCccc-ee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEe
Confidence             111   23333 53 589988866 45666888888888888987663

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=88.39  E-value=2.2  Score=38.17  Aligned_cols=30  Identities=20%  Similarity=0.276  Sum_probs=24.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .||-|+|+|.+|...++.|.+.. .+++-|+
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs   40 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYG-AHIVVIS   40 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CeEEEEc
Confidence            58999999999999999998875 5665554

>PRK05442 malate dehydrogenase; Provisional

Probab=88.30  E-value=2.7  Score=40.45  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQR   28 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~   28 (341)
                      +.||+|+|+ |.+|..++-.|...
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~   27 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASG   27 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhh
Confidence            469999999 99999988777653

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=88.29  E-value=1.5  Score=41.03  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=26.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC--CcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD--DVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p--~~elv~i~~~   39 (341)
                      +|||++|+|.+|+.+++-|.+.+  .-+-+.|.++
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~   36 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR   36 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC
Confidence            58999999999999999998876  2244566665

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=88.19  E-value=0.77  Score=44.31  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.+|+.+++.|.... ++++...
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG-~~Vvv~~   47 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSG-VDVVVGL   47 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCC-CEEEEEE
Confidence            58999999999999999998765 5665443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=88.15  E-value=1.6  Score=39.09  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=49.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      .||.|+|.|.+|..-++.|++.. ..++-| ++.... .+..+.   . .     +        .+..      +..+..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~g-a~VtVv-sp~~~~-~l~~l~---~-~-----~--------~i~~------~~~~~~   63 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAG-AQLRVI-AEELES-ELTLLA---E-Q-----G--------GITW------LARCFD   63 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCC-CEEEEE-cCCCCH-HHHHHH---H-c-----C--------CEEE------EeCCCC
Confidence            58999999999999999998876 455444 431221 111110   0 0     1        1111      111112


Q ss_pred             CCCCCccCCCccEEEecCCCc-cCHHHHHHHHhCCCcE
Q 019445           87 PEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGAKK  123 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~-~s~~~~~~~l~~G~k~  123 (341)
                      ++.+    .++|+||-||+.. .....+..+.+.|+.+
T Consensus        64 ~~dl----~~~~lVi~at~d~~ln~~i~~~a~~~~ilv   97 (205)
T TIGR01470        64 ADIL----EGAFLVIAATDDEELNRRVAHAARARGVPV   97 (205)
T ss_pred             HHHh----CCcEEEEECCCCHHHHHHHHHHHHHcCCEE
Confidence            2222    4789999999986 5556665555677643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07236 hypothetical protein; Provisional

Probab=88.14  E-value=0.69  Score=45.11  Aligned_cols=36  Identities=11%  Similarity=-0.024  Sum_probs=29.6

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |-+|++.+|.|+|+|.+|..++..|.++. ++++-+.
T Consensus         1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v~E   36 (386)
T PRK07236          1 MTHMSGPRAVVIGGSLGGLFAALLLRRAG-WDVDVFE   36 (386)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHhCC-CCEEEEe
Confidence            77788899999999999999999988875 6654443

>PRK06932 glycerate dehydrogenase; Provisional

Probab=88.05  E-value=0.66  Score=44.41  Aligned_cols=29  Identities=24%  Similarity=0.404  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||++++|.+.... +++.+.
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg-~~V~~~  176 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALG-MKVLYA  176 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCC-CEEEEE
Confidence            68999999999999999987664 777665

>PLN02214 cinnamoyl-CoA reductase

Probab=88.00  E-value=2.7  Score=40.30  Aligned_cols=31  Identities=16%  Similarity=0.322  Sum_probs=25.9

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +.+|.|.|+ |++|+.+++.|.++. .+++++.
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~   41 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERG-YTVKGTV   41 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEe
Confidence            358999999 999999999999876 5666664

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=87.92  E-value=0.61  Score=41.12  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      |||+|+|.||+|..++-.+.++. ++++++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G-~~V~g~   29 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKG-HQVIGV   29 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTT-SEEEEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCC-CEEEEE
Confidence            48999999999999998888886 777777

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14982 acyl-ACP reductase; Provisional

Probab=87.82  E-value=0.78  Score=44.46  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=24.3

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEee
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDD-VELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~   37 (341)
                      ..+|.|+|+ |.||++++|.|.++.. -+++.++
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~  188 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVA  188 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEc
Confidence            368999999 9999999999985422 2555554

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=87.53  E-value=1.9  Score=40.92  Aligned_cols=88  Identities=17%  Similarity=0.147  Sum_probs=58.9

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +-||-|.|. |.+|+.+++.|.+.+.-.+.+||-. ..         ++...                   |  ++.+. 
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~-~~---------~~~v~-------------------G--~~~y~-   55 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPG-KG---------GTTVL-------------------G--LPVFN-   55 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCC-CC---------CCeEe-------------------C--eeccC-
Confidence            468999999 9999999999987652244466532 00         11111                   1  12221 


Q ss_pred             CCCCCCCccCCC--ccEEEecCCCccCHHHHHHHHhCCCcEE-EecCC
Q 019445           85 RNPEEIPWAKTG--AEYVVESTGVFTDKDKAAAHLKGGAKKV-VISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~--~DvV~~at~~~~s~~~~~~~l~~G~k~V-~lSa~  129 (341)
                       +.++++   ..  +|+++.++|.....+.++++.++|+|.+ ++|+-
T Consensus        56 -sv~dlp---~~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~G   99 (291)
T PRK05678         56 -TVAEAV---EATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEG   99 (291)
T ss_pred             -CHHHHh---hccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence             233343   23  8999999999999999999999999875 45643

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=87.47  E-value=2.8  Score=39.51  Aligned_cols=84  Identities=20%  Similarity=0.239  Sum_probs=48.3

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      +|.|+|+|-+|...++++.... .+.+.+.+.  +.+.+..      . +.+.            .+           ++
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~--~~~rl~~------a-~~~~------------~i-----------~~  193 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAAG-GSPPAVWET--NPRRRDG------A-TGYE------------VL-----------DP  193 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHcC-CceEEEeCC--CHHHHHh------h-hhcc------------cc-----------Ch
Confidence            6899999999999998887665 554444443  1111100      0 0000            01           11


Q ss_pred             CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                      .+.  ...++|+||||+|.....+.+-+.++.|-+.+.+
T Consensus       194 ~~~--~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       194 EKD--PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             hhc--cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEE
Confidence            100  0237899999999866556666666666654443

>TIGR00518 alaDH alanine dehydrogenase

Probab=87.43  E-value=1.3  Score=43.37  Aligned_cols=29  Identities=21%  Similarity=0.204  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .||.|+|+|.+|+.+++.+.... .+++.+
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lG-a~V~v~  196 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLG-ATVTIL  196 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCC-CeEEEE
Confidence            57999999999999999998875 565554

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=87.42  E-value=1.3  Score=44.42  Aligned_cols=28  Identities=32%  Similarity=0.565  Sum_probs=22.5

Q ss_pred             eEEEEc-cCHHHHHHHHHHHcCCCcEEEEe
Q 019445            8 KIGING-FGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         8 rV~I~G-~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ||+|+| +|.+|+.+++.|.+.. .++..+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v~   30 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKG-FEVIVT   30 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCC-CEEEEE
Confidence            799998 5999999999998765 455444

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=87.31  E-value=0.75  Score=44.24  Aligned_cols=29  Identities=31%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             eeEEEEccCHHHHHHHHHHH-cCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVAL-QRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~-~~p~~elv~i   36 (341)
                      .+|||+|+|+||++++|.+. ... +++.+.
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fg-m~V~~~  175 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFN-MPILYN  175 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCC-CEEEEE
Confidence            68999999999999999986 554 676543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=87.26  E-value=0.98  Score=39.33  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.9

Q ss_pred             eEEEEccCHHHHHHHHHHHcCC
Q 019445            8 KIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p   29 (341)
                      ||.|+|+|-+|.+++..|....
T Consensus         1 ~VlViG~GglGs~ia~~La~~G   22 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSG   22 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcC
Confidence            6899999999999999998765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07574 formate dehydrogenase; Provisional

Probab=87.07  E-value=0.79  Score=45.21  Aligned_cols=30  Identities=40%  Similarity=0.516  Sum_probs=25.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|+||+.++|.|.... +++.+.+
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG-~~V~~~d  222 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFD-VKLHYTD  222 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEEC
Confidence            58999999999999999998764 7776654

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=87.02  E-value=0.99  Score=44.29  Aligned_cols=112  Identities=19%  Similarity=0.187  Sum_probs=61.9

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC---cceEE--C--CE
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTLLF--G--EK   77 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~---~~l~i--~--g~   77 (341)
                      .||+|.|. |-||...+..+.+||+ |+++++... ...+.+..+.+  ...+++.    -..+.   ..+.-  .  +.
T Consensus         2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~-~n~~~L~~q~~--~f~p~~v----~i~d~~~~~~l~~~l~~~~~   74 (389)
T TIGR00243         2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG-KNVALMVEQIL--EFRPKFV----AIDDEASLKDLKTMLQQQGS   74 (389)
T ss_pred             ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC-CCHHHHHHHHH--HcCCCEE----EEcCHHHHHHHHHHhhcCCC
Confidence            58999999 9999999999999875 999999875 33332222111  1111111    11000   00000  0  10


Q ss_pred             EEEEEecC-CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           78 PVAVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        78 ~i~v~~~~-~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .+.++... ...++- ...++|+|+.|.--+....-.-.++++|.+ +-|.
T Consensus        75 ~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~-iaLA  123 (389)
T TIGR00243        75 RTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAGKT-IALA  123 (389)
T ss_pred             CcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCCCc-EEEe
Confidence            12222211 111110 013689999998887777777778899954 5554

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=87.01  E-value=0.81  Score=42.99  Aligned_cols=32  Identities=28%  Similarity=0.542  Sum_probs=25.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||||+|+|++|..+++.|.++. +++.. .++
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~g-~~v~~-~d~   33 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKAG-YSLVV-YDR   33 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHCC-CeEEE-EcC
Confidence            358999999999999999998764 56654 344

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=86.89  E-value=2  Score=40.36  Aligned_cols=29  Identities=31%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             EEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445           11 INGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus        11 I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |.|+ |++|+.+++.|++++++.-|.+.+.
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~   31 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDR   31 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEccc
Confidence            6789 9999999999999875332334343

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=86.82  E-value=0.85  Score=43.91  Aligned_cols=30  Identities=33%  Similarity=0.579  Sum_probs=25.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+.+.+.... +++.+..
T Consensus       143 kTvGIiG~G~IG~~va~~l~afg-m~v~~~d  172 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFG-MKVIGYD  172 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEEC
Confidence            58999999999999999998775 7776663

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.76  E-value=3.4  Score=41.17  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=26.5

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +...+|.|+|+|.+|..+++.|+++. .+++.+ |.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~-d~   36 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLG-AKVILT-DE   36 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC
Confidence            33478999999999999999999886 455444 44

>PLN02928 oxidoreductase family protein

Probab=86.71  E-value=0.85  Score=44.31  Aligned_cols=30  Identities=30%  Similarity=0.349  Sum_probs=26.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+++++.|.... +++.+.+
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG-~~V~~~d  189 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFG-VKLLATR  189 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCC-CEEEEEC
Confidence            58999999999999999998775 7877664

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=86.65  E-value=2.7  Score=40.15  Aligned_cols=94  Identities=14%  Similarity=0.139  Sum_probs=49.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      -+|.|+|+|-+|...++++.... . .++++... .+...++.  +    +|.            ...++.+..      
T Consensus       171 ~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~-~~~~~~a~--~----lGa------------~~vi~~~~~------  224 (343)
T PRK09880        171 KRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVS-PRSLSLAR--E----MGA------------DKLVNPQND------  224 (343)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCC-HHHHHHHH--H----cCC------------cEEecCCcc------
Confidence            37999999999999998887764 4 34444322 11111111  1    110            011111000      


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                      +..++.-...++|+||+|+|...+.+.+-++++.|-+.+.+
T Consensus       225 ~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        225 DLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             cHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            00010000125899999999765566666777777665554

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=86.62  E-value=1.8  Score=42.04  Aligned_cols=21  Identities=19%  Similarity=0.533  Sum_probs=19.0

Q ss_pred             eEEEEccCHHHHHHHHHHHcC
Q 019445            8 KIGINGFGRIGRLVARVALQR   28 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~   28 (341)
                      ||+|+|+|..|-.+...|..+
T Consensus         1 kI~VIGaG~wGtALA~~la~n   21 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAEN   21 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHc
Confidence            689999999999999999764

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=86.47  E-value=1.6  Score=43.28  Aligned_cols=29  Identities=17%  Similarity=0.300  Sum_probs=24.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|+|+|+|.+|+.+++.+.... .+++.+
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~G-a~ViV~  224 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMG-ARVIVT  224 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCc-CEEEEE
Confidence            58999999999999999988764 675554

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=86.47  E-value=0.98  Score=43.28  Aligned_cols=31  Identities=29%  Similarity=0.423  Sum_probs=26.5

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +||-|.|+ |++|+.|++.|+++...+|+++.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~   33 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMD   33 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence            48999999 99999999999876446888775

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=86.46  E-value=0.94  Score=45.07  Aligned_cols=31  Identities=26%  Similarity=0.361  Sum_probs=26.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++||+|+|.|++|..+...|.++. +++..+.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G-~~V~~~D   33 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQ-KQVIGVD   33 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCC-CEEEEEe
Confidence            368999999999999999998875 6766664

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.43  E-value=0.96  Score=42.29  Aligned_cols=30  Identities=33%  Similarity=0.479  Sum_probs=24.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +.||+|+|+|++|..++..+..+. .+++.+
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~g-~~V~~~   32 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVAG-YDVVMV   32 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHCC-CceEEE
Confidence            358999999999999999998875 466555

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.23  E-value=1.3  Score=39.52  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=28.4

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |..|++.+|-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus         1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g-~~v~~~~   37 (249)
T PRK12825          1 MGSLMGRVALVTGAARGLGRAIALRLARAG-ADVVVHY   37 (249)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCC-CeEEEEe
Confidence            66666679999999 999999999998876 3554433

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=86.16  E-value=1.2  Score=41.87  Aligned_cols=29  Identities=24%  Similarity=0.484  Sum_probs=24.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .||||+|+|.+|..+++.+..+. .+++..
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G-~~V~~~   33 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAG-MDVWLL   33 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CeEEEE
Confidence            48999999999999999998875 566554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=86.06  E-value=0.99  Score=43.02  Aligned_cols=30  Identities=37%  Similarity=0.525  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||++++|.+..-. +++.+.+
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG-~~V~~~~  152 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFG-MNIYAYT  152 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            68999999999999999887553 7776664

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=85.55  E-value=1.1  Score=42.77  Aligned_cols=30  Identities=30%  Similarity=0.347  Sum_probs=25.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+++++.|.... +++.+.+
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG-~~V~~~~  166 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWG-FPLRCWS  166 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            58999999999999999998765 7776664

>PTZ00325 malate dehydrogenase; Provisional

Probab=85.51  E-value=6.3  Score=37.88  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDD   30 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~   30 (341)
                      |.||+|+|+ |.+|..+.-.|..++.
T Consensus         8 ~~KI~IiGaaG~VGs~~a~~l~~~~~   33 (321)
T PTZ00325          8 MFKVAVLGAAGGIGQPLSLLLKQNPH   33 (321)
T ss_pred             CCEEEEECCCCHHHHHHHHHHhcCCC
Confidence            469999999 9999999988886553

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=85.34  E-value=1.1  Score=43.20  Aligned_cols=29  Identities=34%  Similarity=0.502  Sum_probs=23.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .++||+|.|+||+.++|.+..-. ++|.+-
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fg-m~v~y~  175 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFG-MKVLYY  175 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCC-CEEEEE
Confidence            68999999999999999998543 666554

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=85.32  E-value=4.9  Score=39.66  Aligned_cols=24  Identities=13%  Similarity=0.308  Sum_probs=21.2

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRD   29 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p   29 (341)
                      ..||+|+|+ |.+|..++-.|....
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~   68 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGE   68 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcc
Confidence            589999999 999999998887654

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=85.28  E-value=2.6  Score=39.84  Aligned_cols=90  Identities=19%  Similarity=0.152  Sum_probs=57.3

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      -||-|.|. |+.|..+++-+...+---+.+||-. ..         ++..+                   |  ++.+.  
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~-~~---------~~~v~-------------------G--~~~y~--   53 (286)
T TIGR01019         7 TKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPG-KG---------GTTVL-------------------G--LPVFD--   53 (286)
T ss_pred             CcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCC-CC---------cceec-------------------C--eeccC--
Confidence            58999999 9999999998877652233334321 00         11111                   1  12221  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE-ecCCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV-ISAPS  130 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~-lSa~~  130 (341)
                      +.++++..- ++|+++.+.|.....+.+.++.++|+|.++ +|+-+
T Consensus        54 sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf   98 (286)
T TIGR01019        54 SVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVCITEGI   98 (286)
T ss_pred             CHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            233443110 379999999999988999999999998764 55443

ATP citrate lyases appear to form an outgroup.

>PRK13243 glyoxylate reductase; Reviewed

Probab=85.17  E-value=1.1  Score=43.22  Aligned_cols=29  Identities=45%  Similarity=0.617  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||+.+++.|.... +++.+.
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G-~~V~~~  179 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFG-MRILYY  179 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence            68999999999999999998764 676554

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=85.08  E-value=1.2  Score=42.89  Aligned_cols=30  Identities=27%  Similarity=0.433  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++|||+|+|.||+.+++.|.... +++.+..
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~d  176 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFG-ATITAYD  176 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEEe
Confidence            48999999999999999998764 6776653

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.86  E-value=4.2  Score=40.29  Aligned_cols=83  Identities=20%  Similarity=0.281  Sum_probs=50.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      .||.|+|.|.+|+.+++.|.+.. .++.+ .|.....     +.   . .+...                .  ...  ..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G-~~V~g-~D~~~~~-----~~---~-~~~~~----------------~--~~~--~~   52 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKG-VYVIG-VDKSLEA-----LQ---S-CPYIH----------------E--RYL--EN   52 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCC-CEEEE-EeCCccc-----cc---h-hHHHh----------------h--hhc--CC
Confidence            58999999999999999998876 45443 3431110     00   0 00000                0  000  01


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK  123 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~  123 (341)
                      ++.+   ..++|++|-+.|.....+.+.+++++|+++
T Consensus        53 ~~~~---~~~~dlvV~s~gi~~~~~~l~~A~~~g~~v   86 (418)
T PRK00683         53 AEEF---PEQVDLVVRSPGIKKEHPWVQAAIASHIPV   86 (418)
T ss_pred             cHHH---hcCCCEEEECCCCCCCcHHHHHHHHCCCcE
Confidence            1221   126799999988777778888889999863

>PLN02602 lactate dehydrogenase

Probab=84.68  E-value=2.4  Score=41.29  Aligned_cols=30  Identities=33%  Similarity=0.554  Sum_probs=23.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i   36 (341)
                      .||+|+|+|.+|..++-.|...+-. ||+-+
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~Li   68 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALV   68 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE
Confidence            5999999999999999888776533 34333

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.59  E-value=1.6  Score=41.34  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=24.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .||+|+|+|.+|..++..|.++. .+++.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g-~~V~~~   33 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKG-LQVVLI   33 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEE
Confidence            48999999999999999998765 566555

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=84.50  E-value=4.4  Score=39.12  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.1

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHc
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQ   27 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~   27 (341)
                      +.++||+|+|.|..|..+.+++.+
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~   42 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGE   42 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhh
Confidence            346899999999999999999865

>PLN02494 adenosylhomocysteinase

Probab=84.36  E-value=2.3  Score=43.00  Aligned_cols=29  Identities=17%  Similarity=0.280  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|+|+|+|.||+.+++.+.... ++++.+
T Consensus       255 KtVvViGyG~IGr~vA~~aka~G-a~VIV~  283 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAAG-ARVIVT  283 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 576554

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=84.27  E-value=2.1  Score=31.83  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=24.3

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||.|+|+|++|-|++..|.+.. .++.-|..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~   30 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELG-KEVTLIER   30 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-SEEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHHhC-cEEEEEec
Confidence            6899999999999999998765 56655543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02306 hydroxypyruvate reductase

Probab=84.26  E-value=1.4  Score=43.51  Aligned_cols=29  Identities=31%  Similarity=0.510  Sum_probs=23.9

Q ss_pred             eeEEEEccCHHHHHHHHHHH-cCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVAL-QRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~-~~p~~elv~i   36 (341)
                      .+|||+|+|+||++++|.+. .. .+++.+.
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~  195 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYY  195 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CCEEEEE
Confidence            68999999999999999985 55 3777655

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.18  E-value=6.6  Score=39.55  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=50.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ..||.|+|+|.+|.++++.|.++. .+++.+...  +.+....+.+      .+.       .      .|  +.++...
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~--~~~~~~~~~~------~l~-------~------~g--v~~~~~~   71 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELG-ARVTVVDDG--DDERHRALAA------ILE-------A------LG--ATVRLGP   71 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC--chhhhHHHHH------HHH-------H------cC--CEEEECC
Confidence            358999999999999999998876 565554322  1111000000      000       0      01  1111111


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK  122 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k  122 (341)
                      .++ .   ..++|+|+.++|.--..+.+..+.+.|.+
T Consensus        72 ~~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~  104 (480)
T PRK01438         72 GPT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGIP  104 (480)
T ss_pred             Ccc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCCe
Confidence            121 1   23689999999987666666666677763

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=84.15  E-value=0.96  Score=40.35  Aligned_cols=30  Identities=27%  Similarity=0.265  Sum_probs=24.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i   36 (341)
                      ..||.|+|+|-+|.++++.|.... + ++.-+
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~G-v~~i~lv   51 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAG-VGTIVIV   51 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcC-CCeEEEe
Confidence            368999999999999999998875 4 44344

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=84.00  E-value=1.8  Score=38.59  Aligned_cols=34  Identities=18%  Similarity=0.148  Sum_probs=26.8

Q ss_pred             CCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            3 GDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         3 ~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .|++.+|-|.|+ |.+|+.+++.|.+++ .+++.+.
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~   36 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADG-AKVVIYD   36 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEe
Confidence            334468999999 999999999999886 4655554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=83.96  E-value=1.3  Score=43.93  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=25.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+..
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fG-m~V~~~d  181 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLG-MRVYFYD  181 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998764 7776653

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=83.88  E-value=1.6  Score=38.87  Aligned_cols=31  Identities=26%  Similarity=0.542  Sum_probs=26.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++|+|.|+|.+|+.+.+.|.+.. .+++ +.|.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vv-v~D~   59 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEG-AKLI-VADI   59 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEcC
Confidence            58999999999999999999876 6877 5554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=83.65  E-value=1.8  Score=41.07  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=25.6

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +|-|.|. ||||...++.|++.. .+++.+-..
T Consensus         2 ~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL   33 (329)
T COG1087           2 KVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNL   33 (329)
T ss_pred             eEEEecCcchhHHHHHHHHHHCC-CeEEEEecC
Confidence            6888998 999999999999975 677666554

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=83.50  E-value=1.4  Score=43.25  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||+.+.+.|.... +++.+.
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G-~~V~~~  145 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALG-IKTLLC  145 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998765 777655

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.33  E-value=5.3  Score=40.56  Aligned_cols=84  Identities=21%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe-cC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG-FR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~-~~   85 (341)
                      .||.|+|+|.+|+..+++|.... .+++ +.|..  ......+.   . .                   |  +.++. ..
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G-~~v~-~~D~~--~~~~~~l~---~-~-------------------g--~~~~~~~~   63 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFG-ARPT-VCDDD--PDALRPHA---E-R-------------------G--VATVSTSD   63 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCC-CEEE-EEcCC--HHHHHHHH---h-C-------------------C--CEEEcCcc
Confidence            48999999999999999988775 4544 45641  11111110   0 0                   0  01110 11


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK  123 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~  123 (341)
                      .++.+    .++|+||.+.|...+.....++.++|+++
T Consensus        64 ~~~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi~v   97 (488)
T PRK03369         64 AVQQI----ADYALVVTSPGFRPTAPVLAAAAAAGVPI   97 (488)
T ss_pred             hHhHh----hcCCEEEECCCCCCCCHHHHHHHHCCCcE
Confidence            12222    36799999999877777777777788753

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=83.24  E-value=0.57  Score=38.72  Aligned_cols=42  Identities=19%  Similarity=0.268  Sum_probs=26.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhh
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTY   48 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~   48 (341)
                      .||.|+|+|-+|.++++.|....--++.-+-+...+.+.+.+
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r   44 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNR   44 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeeccccc
Confidence            589999999999999999987652244444332234444433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN03139 formate dehydrogenase; Provisional

Probab=83.21  E-value=1.4  Score=43.45  Aligned_cols=29  Identities=31%  Similarity=0.437  Sum_probs=24.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|+||+.++|.|... .+++.+.
T Consensus       200 ktVGIVG~G~IG~~vA~~L~af-G~~V~~~  228 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPF-NCNLLYH  228 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHC-CCEEEEE
Confidence            5899999999999999999865 4777554

>PRK06153 hypothetical protein; Provisional

Probab=83.17  E-value=1.7  Score=42.84  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .||+|+|+|-+|..++..|..-+=-+|+-|
T Consensus       177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LV  206 (393)
T PRK06153        177 QRIAIIGLGGTGSYILDLVAKTPVREIHLF  206 (393)
T ss_pred             CcEEEEcCCccHHHHHHHHHHcCCCEEEEE
Confidence            589999999999999999998773355444

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.15  E-value=2.7  Score=40.62  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDD   30 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~   30 (341)
                      ++||+|+|+|.+|..+...|.++.+
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g~   31 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRGP   31 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC
Confidence            4699999999999999999987753

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=83.11  E-value=2.5  Score=43.22  Aligned_cols=31  Identities=19%  Similarity=0.099  Sum_probs=24.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      -||.|+|+|.+|...++.+.... ..+ .+.+.
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lG-A~V-~v~d~  195 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLG-AIV-RAFDT  195 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEE-EEEeC
Confidence            58999999999999999988775 343 34443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd00704 MDH Malate dehydrogenase

Probab=83.10  E-value=6.1  Score=37.97  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.3

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRD   29 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p   29 (341)
                      .||+|+|+ |.+|..++..|...+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~   24 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGE   24 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCC
Confidence            48999999 999999999888755

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=83.04  E-value=3  Score=43.20  Aligned_cols=30  Identities=20%  Similarity=0.159  Sum_probs=25.1

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|.|.|+ |+||+.+++.|+++. .+|+++.
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~G-~~Vval~  111 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKLG-FRVRAGV  111 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CeEEEEe
Confidence            46999999 999999999998875 5776664

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=82.67  E-value=4.3  Score=38.23  Aligned_cols=31  Identities=19%  Similarity=0.278  Sum_probs=26.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .+|-|.|+ |+||+.+++.|.++. .+++++..
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r   37 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRG-YTVKATVR   37 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEC
Confidence            58999999 999999999999886 56766544

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=82.60  E-value=7.4  Score=39.12  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.9

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQR   28 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~   28 (341)
                      .+||+|+|+ |.+|..++-.|...
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc
Confidence            589999999 99999999988776

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=82.58  E-value=9  Score=39.25  Aligned_cols=31  Identities=19%  Similarity=0.084  Sum_probs=25.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      -||.|+|+|.+|...++.+.... .++ .+.|.
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lG-A~V-~a~D~  196 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLG-AIV-RAFDT  196 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CEE-EEEeC
Confidence            68999999999999999988776 454 44455

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=82.49  E-value=3.4  Score=38.74  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|-|.|+ |+||+.+++.|+++. .+++.+.
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~   35 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRG-YTVKATV   35 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCC-CEEEEEE
Confidence            58999999 999999999999876 4666554

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=82.46  E-value=2.6  Score=40.47  Aligned_cols=34  Identities=18%  Similarity=0.129  Sum_probs=27.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ..+++|+|+|..|+..++.|.....++-+.|.++
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R  162 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR  162 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC
Confidence            3589999999999999999975344777788776

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=82.45  E-value=1.9  Score=37.68  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=22.6

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ||+|+|+|.+|+.++..++.+. ++++-+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~   28 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAG-YEVTLY   28 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTT-SEEEEE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCC-CcEEEE
Confidence            7999999999999999998875 665444

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=82.42  E-value=3.4  Score=39.68  Aligned_cols=24  Identities=17%  Similarity=0.373  Sum_probs=20.4

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRD   29 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p   29 (341)
                      +.||+|+|+ |.+|..++-.|....
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~   26 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGE   26 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcc
Confidence            469999999 999999998887543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=82.27  E-value=1.6  Score=39.38  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      ..||.|+|+|-+|.+++..|....
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~G   51 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSG   51 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcC
Confidence            368999999999999999998765

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=82.26  E-value=3.7  Score=41.43  Aligned_cols=87  Identities=18%  Similarity=0.150  Sum_probs=50.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh--hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST--DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~--~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      ..||+|+|+|..|+..+|+|.++. .++ .+.|.....  .....          +.       .+      +  ..++.
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g-~~v-~~~d~~~~~~~~~~~~----------l~-------~~------~--~~~~~   60 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHL-PAQ-ALTLFCNAVEAREVGA----------LA-------DA------A--LLVET   60 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcC-CEE-EEEcCCCcccchHHHH----------Hh-------hc------C--EEEeC
Confidence            358999999999999999999876 443 445531110  00000          10       00      0  11111


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK  123 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~  123 (341)
                      ..+++.+    .++|+|+-+.+...+.+...++.+.|.++
T Consensus        61 ~~~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~~i~i   96 (468)
T PRK04690         61 EASAQRL----AAFDVVVKSPGISPYRPEALAAAARGTPF   96 (468)
T ss_pred             CCChHHc----cCCCEEEECCCCCCCCHHHHHHHHcCCcE
Confidence            1122222    36899999888776766677777777643

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=82.13  E-value=1.1  Score=42.65  Aligned_cols=22  Identities=36%  Similarity=0.320  Sum_probs=19.8

Q ss_pred             eEEEEccCHHHHHHHHHHHcCC
Q 019445            8 KIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p   29 (341)
                      ||.|+|+|-+|-++++.|..-.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aG   22 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWG   22 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC
Confidence            6899999999999999998764

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=81.66  E-value=8.8  Score=36.77  Aligned_cols=31  Identities=29%  Similarity=0.316  Sum_probs=24.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      -+|.|.|+|-+|...++++.... .+++.+..
T Consensus       174 ~~vlI~G~G~vG~~a~q~ak~~G-~~vi~~~~  204 (355)
T cd08230         174 RRALVLGAGPIGLLAALLLRLRG-FEVYVLNR  204 (355)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEEec
Confidence            47999999999999998877765 57777653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=81.59  E-value=3.6  Score=43.92  Aligned_cols=30  Identities=33%  Similarity=0.440  Sum_probs=23.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC-CcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRD-DVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i   36 (341)
                      .||+|+|+|.+|+.+++.+.+.. ..++..+
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~   34 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAV   34 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEE
Confidence            58999999999999999998754 2354444

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=81.54  E-value=1.3  Score=40.32  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=24.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ..||.|+|+|-+|.++++.|.... +.-..+.|
T Consensus        21 ~~~VlivG~GglGs~va~~La~~G-vg~i~lvD   52 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVD   52 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEc
Confidence            368999999999999999998765 43334444

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=81.40  E-value=1.9  Score=41.84  Aligned_cols=33  Identities=33%  Similarity=0.389  Sum_probs=30.2

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEeeCC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDD-VELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~~~   39 (341)
                      .|+.|.|. |-||...+.++.++|+ |+++++...
T Consensus         2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag   36 (385)
T COG0743           2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAG   36 (385)
T ss_pred             ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecC
Confidence            58999999 9999999999999985 899999765

>PRK07326 short chain dehydrogenase; Provisional

Probab=81.39  E-value=2.5  Score=37.68  Aligned_cols=36  Identities=22%  Similarity=0.123  Sum_probs=27.9

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |..|+..++-|.|+ |.+|+.+++.|.++. .+++.+.
T Consensus         1 m~~~~~~~ilItGatg~iG~~la~~l~~~g-~~V~~~~   37 (237)
T PRK07326          1 MMSLKGKVALITGGSKGIGFAIAEALLAEG-YKVAITA   37 (237)
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEee
Confidence            43344468999999 999999999999874 6766664

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=81.38  E-value=5  Score=38.20  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=24.4

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .+|+|+|. |.+|+-+.++|.++. .++...++
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~g-atVtv~~~  191 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAH-CSVTVVHS  191 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCC-CEEEEECC
Confidence            58999999 699999999998764 55555543

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=81.12  E-value=5.7  Score=37.64  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             EEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            9 IGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         9 V~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |+|+|+|++|..++-.|...+-+.-+.+.|.
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~   31 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            5899999999999988887763332233343

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08219 short chain dehydrogenase; Provisional

Probab=81.05  E-value=2.1  Score=37.77  Aligned_cols=31  Identities=23%  Similarity=0.184  Sum_probs=25.4

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ||+++-|.|+ |.+|+.+++.|.++  .+++.+.
T Consensus         2 ~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~   33 (227)
T PRK08219          2 ERPTALITGASRGIGAAIARELAPT--HTLLLGG   33 (227)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEe
Confidence            3468999999 99999999999887  5666664

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.83  E-value=2.6  Score=39.62  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=24.7

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +..||+|+|+|.+|..+...+..+. ++++..
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G-~~V~l~   33 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAG-YDVLLN   33 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CeEEEE
Confidence            3468999999999999999998774 555444

>PLN02427 UDP-apiose/xylose synthase

Probab=80.77  E-value=2.3  Score=41.45  Aligned_cols=32  Identities=19%  Similarity=0.332  Sum_probs=27.1

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++||-|.|+ |++|+.|++.|.++...+++++.
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~   46 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALD   46 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence            368999999 99999999999987546777775

>PRK08291 ectoine utilization protein EutC; Validated

Probab=80.59  E-value=3.6  Score=39.56  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=26.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .+++|+|+|..|+..++.+.....++-+.|.++
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R  165 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWAR  165 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            589999999999999998875434777777776

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=80.40  E-value=2.1  Score=39.42  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=20.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      .||.|+|+|-+|.++++.|..-.
T Consensus        33 ~~VliiG~GglGs~va~~La~~G   55 (245)
T PRK05690         33 ARVLVVGLGGLGCAASQYLAAAG   55 (245)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC
Confidence            58999999999999999998765

>PLN02712 arogenate dehydrogenase

Probab=80.13  E-value=2.5  Score=44.73  Aligned_cols=31  Identities=29%  Similarity=0.605  Sum_probs=26.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++||||+|+|.+|+.+++.|.++. ++|+++.
T Consensus        52 ~~kIgIIG~G~mG~slA~~L~~~G-~~V~~~d   82 (667)
T PLN02712         52 QLKIAIIGFGNYGQFLAKTLISQG-HTVLAHS   82 (667)
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC-CEEEEEe
Confidence            479999999999999999998875 6776654

>PRK07340 ornithine cyclodeaminase; Validated

Probab=80.07  E-value=2.1  Score=40.73  Aligned_cols=33  Identities=18%  Similarity=0.002  Sum_probs=26.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~   39 (341)
                      ..+++|+|+|..|+..++.+.. +| ++-+.|.++
T Consensus       125 ~~~v~IiGaG~qa~~~~~al~~~~~-~~~v~v~~r  158 (304)
T PRK07340        125 PGDLLLIGTGVQARAHLEAFAAGLP-VRRVWVRGR  158 (304)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence            3689999999999999999875 45 566677776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	341
3e5r_O	337	Crystal Structure And Functional Analysis Of Glycer		1e-165
3e6a_O	336	Crystal Structure And Functional Analysis Of Glycer		1e-165
1ihx_A	333	Crystal Structure Of Two D-Glyceraldehyde-3-Phospha		1e-129
1szj_G	333	Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydr		1e-128
1gpd_G	334	Studies Of Asymmetry In The Three-Dimensional Struc		1e-128
4gpd_1	333	The Structure Of Lobster Apo-D-Glyceraldehyde-3-Pho		1e-128
1dss_G	333	Structure Of Active-Site Carboxymethylated D-Glycer		1e-127
4iq8_A	340	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		1e-127
3pym_A	332	Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Res		1e-127
1znq_O	338	Crsytal Structure Of Human Liver Gapdh Length = 338		1e-126
1u8f_O	335	Crystal Structure Of Human Placental Glyceraldehyde		1e-126
2i5p_O	342	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		1e-125
1j0x_O	332	Crystal Structure Of The Rabbit Muscle Glyceraldehy		1e-124
3gpd_R	334	Twinning In Crystals Of Human Skeletal Muscle D-Gly		1e-123
2vyn_D	334	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		1e-119
3h9e_B	346	Crystal Structure Of Human Sperm-Specific Glycerald		1e-119
1s7c_A	331	Crystal Structure Of Mes Buffer Bound Form Of Glyce		1e-118
1gad_O	330	Comparison Of The Structures Of Wild Type And A N31		1e-118
1gae_O	330	Comparison Of The Structures Of Wild Type And A N31		1e-117
2vyn_A	331	Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotet		1e-117
1vsu_A	359	Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate		1e-115
3cps_A	354	Crystal Structure Of Cryptosporidium Parvum Glycera		1e-115
2b4r_O	345	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		1e-114
1ywg_O	337	The Structure Of Glyceraldehyde-3-Phosphate Dehydro		1e-114
3cif_A	359	Crystal Structure Of C153s Mutant Glyceraldehyde 3-		1e-113
3sth_A	361	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		1e-109
1dc4_A	330	Structural Analysis Of Glyceraldehyde 3-Phosphate D		1e-108
2x0n_A	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		1e-100
1k3t_A	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		2e-98
3dmt_C	359	Structure Of Glycosomal Glyceraldehyde-3-Phosphate		6e-97
1a7k_A	360	Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase		4e-95
1gyp_A	358	Crystal Structure Of Glycosomal Glyceraldehyde-3-Ph		5e-95
1gd1_O	334	Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydr		1e-87
3dbv_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		6e-87
1dbv_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		1e-86
1npt_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		2e-86
1nq5_O	334	Glyceraldehyde-3-Phosphate Dehydrogenase Mutant Wit		3e-86
1hdg_O	332	The Crystal Structure Of Holo-glyceraldehyde-3-phos		2e-83
3doc_A	335	Crystal Structure Of Trka Glyceraldehyde-3-Phosphat		1e-79
3hja_A	356	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		3e-78
2ep7_A	342	Structural Study Of Project Id Aq_1065 From Aquifex		9e-78
3l0d_A	356	Crystal Structure Of Glyceraldehyde-3-phosphate Deh		2e-74
2pkq_O	368	Crystal Structure Of The Photosynthetic A2b2-Glycer		6e-72
1cer_O	331	Determinants Of Enzyme Thermostability Observed In		3e-71
4dib_A	345	The Crystal Structure Of Glyceraldehyde-3-Phosphate		5e-71
1vc2_A	331	Crystal Structure Of Glyceraldehyde 3-Phosphate Deh		6e-71
3gnq_A	344	Crystal Structure Of Glyceraldehyde-3-Phosphate Deh		4e-70
2g82_O	331	High Resolution Structures Of Thermus Aquaticus Gly		8e-70
1rm3_O	337	Crystal Structure Of Mutant T33a Of Photosynthetic		1e-69
1nbo_O	337	The Dual Coenzyme Specificity Of Photosynthetic Gly		1e-69
2pkr_O	365	Crystal Structure Of (A+cte)4 Chimeric Form Of Phot		2e-69
1rm5_O	337	Crystal Structure Of Mutant S188a Of Photosynthetic		3e-69
1jn0_O	335	Crystal Structure Of The Non-Regulatory A4 Isoform		5e-69
3b1j_A	339	Crystal Structure Of Dehydrogenese Length = 339		2e-67
2d2i_A	380	Crystal Structure Of Nadp-Dependent Glyceraldehyde-		3e-67
1obf_O	335	The Crystal Structure Of Glyceraldehyde 3-Phosphate		9e-65
3vaz_P	344	Crystal Structure Of Staphylococcal Gapdh1 In A Hex		3e-64
3lvf_P	338	Crystal Structure Of Holo Glyceraldehyde-3-Phosphat		3e-64
3k2b_A	337	Crystal Structure Of Photosynthetic A4 Isoform Glyc		4e-64
3lc7_O	339	Crystal Structure Of Apo Glyceraldehyde-3-Phosphate		5e-64
3k73_Q	336	Crystal Structure Of Phosphate Bound Holo Glycerald		5e-64
3lc1_P	336	Crystal Structure Of H178n Mutant Of Glyceraldehyde		4e-63
3hq4_R	336	Crystal Structure Of C151s Mutant Of Glyceraldehyde		1e-62
3k9q_Q	336	Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde		2e-62
3ksd_Q	336	Crystal Structure Of C151s+h178n Mutant Of Glyceral		8e-62
2x5j_O	339	Crystal Structure Of The Apoform Of The D-Erythrose		2e-55
2xf8_A	338	Structure Of The D-Erythrose-4-Phosphate Dehydrogen		2e-55
2x5k_O	339	Structure Of An Active Site Mutant Of The D-Erythro		1e-52

>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 337

Iteration: 1
 Score =  577 bits (1486), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/335 (82%), Positives = 300/335 (89%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K
Sbjct: 3   KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 62
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
           +KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT               VV
Sbjct: 63  IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 122
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFV GVNE +Y  ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH+
Sbjct: 123 ISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 182
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTVDV
Sbjct: 183 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDV 242
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVR+EK A+Y+ IK+AIK  SEGKLKGI+GY EED+VSTDFVGDSRSSIFDAKAG
Sbjct: 243 SVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAG 302
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           IAL+ NFVKLV+WYDNEWGYS+RVIDLI HMAKTQ
Sbjct: 303 IALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337

>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza Sativa Length = 336

Iteration: 1
 Score =  576 bits (1485), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/335 (82%), Positives = 300/335 (89%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+++K
Sbjct: 2   KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIK 61
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
           +KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFT               VV
Sbjct: 62  IKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVV 121
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPSKDAPMFV GVNE +Y  ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLMTTVH+
Sbjct: 122 ISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHA 181
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRVPTVDV
Sbjct: 182 ITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDV 241
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVR+EK A+Y+ IK+AIK  SEGKLKGI+GY EED+VSTDFVGDSRSSIFDAKAG
Sbjct: 242 SVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAG 301
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           IAL+ NFVKLV+WYDNEWGYS+RVIDLI HMAKTQ
Sbjct: 302 IALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 336

>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate Dehydrogenase Complexes: A Case Of Asymmetry Length = 333

Iteration: 1
 Score =  457 bits (1175), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/334 (67%), Positives = 267/334 (79%), Gaps = 3/334 (0%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL+    ++VAVNDPFI+ +YM YMFKYDS HG +K  E+KV+
Sbjct: 2   KIGINGFGRIGRLVLRTALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKVE 59
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               V+IS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
           VDLTVRL KE +Y++IK A+K  SEG L+G+LGYTE+DVVS DF GD+RSSIFDAKAGI 
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKTASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQ 298
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           LSK FVK+VSWYDNE+GYS RVIDLI HM K  +
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKVDS 332

>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase From Palinurus Versicolor Refined 2.0 Angstrom Resolution Length = 333

Iteration: 1
 Score =  456 bits (1172), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/334 (67%), Positives = 266/334 (79%), Gaps = 3/334 (0%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL+    ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K +
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAE 59
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               V+IS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
           VDLTVRL KE +Y++IK A+K  SEG L+G+LGYTE+DVVS DF GD+RSSIFDAKAGI 
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQ 298
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           LSK FVK+VSWYDNE+GYS RVIDLI HM K  +
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKVDS 332

>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/334 (67%), Positives = 267/334 (79%), Gaps = 3/334 (0%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL     ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K++
Sbjct: 3   KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKME 60
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               VVIS
Sbjct: 61  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 119
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 120 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 179
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT DVSV
Sbjct: 180 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 239
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
           VDLTVRL KE +Y++IK A+K  SEG L+G LGYTE+DVVS+DF+GD+RSSIFDAKAGI 
Sbjct: 240 VDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQ 299
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           LSK FVK+VSWYDNE+GYS RVIDL+ HM K  +
Sbjct: 300 LSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVDS 333

>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase At 3.0 Angstroms Resolution Length = 333

Iteration: 1
 Score =  455 bits (1171), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/334 (67%), Positives = 267/334 (79%), Gaps = 3/334 (0%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL     ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K++
Sbjct: 2   KIGINGFGRIGRLVLRAALSCG-AQVVAVNDPFIALEYMVYMFKYDSTHGVFK-GEVKME 59
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               VVIS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNASCTTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT DVSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPDVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
           VDLTVRL KE +Y++IK A+K  SEG L+G LGYTE+DVVS+DF+GD+RSSIFDAKAGI 
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQ 298
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           LSK FVK+VSWYDNE+GYS RVIDL+ HM K  +
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLLKHMQKVDS 332

>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated D-Glyceraldehyde-3- Phosphate Dehydrogenase From Palinurus Versicolor Length = 333

Iteration: 1
 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/334 (67%), Positives = 265/334 (79%), Gaps = 3/334 (0%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL+    ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K +
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAE 59
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   ++ G+K + VF    PE IPW+K GAEY+VESTGVFT               V+IS
Sbjct: 60  DGALVVDGKK-ITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118
Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSIT 187
           APS DAPMFV GVN ++Y  ++ +VSNAS TTNCLAP+AKV+H+ F IVEGLMTTVH++T
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENFEIVEGLMTTVHAVT 178
Query: 188 ATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSV 247
           ATQKTVDGPS KDWRGGR A+ NIIPSSTGAAKAVGKV+P L+GKLTGM+FRVPT +VSV
Sbjct: 179 ATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSV 238
Query: 248 VDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIA 307
           VDLTVRL KE +Y++IK A+K  SEG L+G+LGYTE+DVVS DF GD+RSSIFDAKAGI 
Sbjct: 239 VDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQ 298
Query: 308 LSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           LSK FVK+VSWYDNE+GYS RVIDLI HM K  +
Sbjct: 299 LSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKVDS 332

>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase 3 From Saccharomyces Cerevisiae Length = 340

Iteration: 1
 Score =  450 bits (1157), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/332 (65%), Positives = 261/332 (78%), Gaps = 2/332 (0%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY  YMFKYDS HG++   E+  
Sbjct: 10  VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS- 67
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D+K ++   K +A +  R+P  +PW  +  +  ++STGVF                VVI
Sbjct: 68  HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 127
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           +APS  APMFV+GVNE++Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 128 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 187
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct: 188 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 247
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
           VVDLTV+L KE TY+EIK  +K  +EGKLKG+LGYTE+ VVS+DF+GDS SSIFDA AGI
Sbjct: 248 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGI 307
Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
            LS  FVKLVSWYDNE+GYS+RV+DL+ H+AK
Sbjct: 308 QLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 339

>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution Length = 332

Iteration: 1
 Score =  450 bits (1157), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/332 (65%), Positives = 261/332 (78%), Gaps = 2/332 (0%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY  YMFKYDS HG++   E+  
Sbjct: 2   VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVS- 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D+K ++   K +A +  R+P  +PW  +  +  ++STGVF                VVI
Sbjct: 60  HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           +APS  APMFV+GVNE++Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
           VVDLTV+L KE TY+EIK  +K  +EGKLKG+LGYTE+ VVS+DF+GDS SSIFDA AGI
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGI 299
Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
            LS  FVKLVSWYDNE+GYS+RV+DL+ H+AK
Sbjct: 300 QLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331

>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh Length = 338

Iteration: 1
 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/335 (64%), Positives = 259/335 (77%), Gaps = 2/335 (0%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NGFGRIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++ H  +K
Sbjct: 6   KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 64
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
            ++ K ++ G  P+ +F  R+P +I W   GAEYVVESTGVFT               V+
Sbjct: 65  AENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 123
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPS DAPMFV+GVN ++Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 124 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 183
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 184 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV 243
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLT RLEK A Y++IK  +K+ SEG LKGILGYTE  VVS+DF  D+ SS FDA AG
Sbjct: 244 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG 303
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           IAL+ +FVKL+SWYDNE+GYS+RV+DL+ HMA  +
Sbjct: 304 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 338

>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3- Phosphate Dehydrogenase At 1.75 Resolution Length = 335

Iteration: 1
 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 216/335 (64%), Positives = 259/335 (77%), Gaps = 2/335 (0%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NGFGRIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++ H  +K
Sbjct: 3   KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVK 61
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
            ++ K ++ G  P+ +F  R+P +I W   GAEYVVESTGVFT               V+
Sbjct: 62  AENGKLVINGN-PITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 120
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPS DAPMFV+GVN ++Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 181 ITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANV 240
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLT RLEK A Y++IK  +K+ SEG LKGILGYTE  VVS+DF  D+ SS FDA AG
Sbjct: 241 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAG 300
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           IAL+ +FVKL+SWYDNE+GYS+RV+DL+ HMA  +
Sbjct: 301 IALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335

>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase Isoform 1 From K. Marxianus Length = 342

Iteration: 1
 Score =  443 bits (1140), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/335 (65%), Positives = 263/335 (78%), Gaps = 3/335 (0%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G + + I INGFGRIGRLV R+AL+R ++++VA+NDPFIS DY  YMFKYDS HG++K  
Sbjct: 11  GIQMVSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHGKYK-G 69
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
           E+   D   L+   K VAVF  ++P  +PW K G +  V+STGVF               
Sbjct: 70  EVS-HDGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAK 128
Query: 123 XVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
            VVI+APSK APMFVVGVNE +Y  E  IVSNASCTTNCLAP+AK+I+D+FGI EGLMTT
Sbjct: 129 KVVITAPSKTAPMFVVGVNEDKYNGE-KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTT 187
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           VHSITATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPT
Sbjct: 188 VHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPT 247
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            DVSVVDLTV+L K ATY+EIK A+K+ SEGKLK ++GYTE+ VVS+DF+GD+ S+IFDA
Sbjct: 248 TDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDA 307
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
            AGI LS  FVKLV+WYDNE+GYS+RV+DL+ H+A
Sbjct: 308 AAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 342

>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3- Phosphate Dehydrogenase (Gapdh) Length = 332

Iteration: 1
 Score =  439 bits (1130), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/334 (64%), Positives = 257/334 (76%), Gaps = 2/334 (0%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+G+NGFGRIGRLV R A     V++VA+NDPFI   YM YMF+YDS HG++ H  +K 
Sbjct: 1   VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKA 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           ++ K ++ G K + +F  R+P  I W   GAEYVVESTGVFT               V+I
Sbjct: 60  ENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVII 118
Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           SAPS DAPMFV+GVN ++Y   L IVSNAS TTNCLAPLAKVIHD FGIVEGLMTTVH+I
Sbjct: 119 SAPSADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 178
Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS K WR GR A+ NIIP+STGAAKAVGKV+P LNGKLTGM+FRVPT +VS
Sbjct: 179 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 238
Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
           VVDLT RLEK A Y++IK  +K+ SEG LKGILGYTE+ VVS DF  D+ SS FDA AGI
Sbjct: 239 VVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGI 298
Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           AL+ +FVKL+SWYDNE+GYS+RV+DL+VHMA  +
Sbjct: 299 ALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 332

>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle D-Glyceraldehyde-3- Phosphate Dehydrogenase Length = 334

Iteration: 1
 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/335 (63%), Positives = 255/335 (76%), Gaps = 2/335 (0%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G++GFGRIGRLV R A     V++VA+NDPFI   YM YMF+YDS HG++ H  +K
Sbjct: 2   KVKVGVDGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVK 60
Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVV 125
            +D K ++ G K + +F  R+PE I W   G  YVVESTGVFT               +V
Sbjct: 61  AEDGKLVIDG-KAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKRIV 119
Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           ISAPS DAPMFV+GVN  +Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLMTTVH+
Sbjct: 120 ISAPSADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 179
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
           ITATQKTVD PS K WRGGR A+ N+IP+STGAAKAVGKV+P L+GKLTGM+FRVPT +V
Sbjct: 180 ITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPELDGKLTGMAFRVPTANV 239
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SV+DLT RLEK A Y++IK  +KE SEG LKGILGYTE++VVS DF G + SSIFDA AG
Sbjct: 240 SVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSDDFNGSNHSSIFDAGAG 299
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           I L+  FVKLVSWYDNE+GYS RV+DL+ HMA  +
Sbjct: 300 IELNDTFVKLVSWYDNEFGYSERVVDLMAHMASKE 334

>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 334

Iteration: 1
 Score =  426 bits (1094), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/331 (63%), Positives = 256/331 (77%), Gaps = 4/331 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGRLV RV +++  V +VAVNDPFI  +YM YMFKYDS HG++K   ++ 
Sbjct: 2   VKVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GTVEH 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           K+ + L+     + VF  + P+EIPW+  G  YVVE+TGV+                V++
Sbjct: 60  KNGR-LVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIV 118
Query: 127 SAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           +APS DAPM V+GVNEK+Y P  + +VSNAS TTNCLAPLAKVIH++FGIVEGLMTTVH+
Sbjct: 119 TAPSPDAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERFGIVEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR A  NIIPSSTGAAKAVGKV+P LNGKLTGM+FRVPT +V
Sbjct: 179 YTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLT RL + A+Y  IK A+K  ++G + GIL YTE+ VVSTDF GDS SSIFDAKAG
Sbjct: 239 SVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAG 298
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 336
           IAL+ NFVKLVSWYDNE+GYS RV+DL+ +M
Sbjct: 299 IALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 329

>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of Glyceraldehyde 3- Phosphate Dehydrogenase From Escherichia Coli Length = 331

Iteration: 1
 Score =  421 bits (1081), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/333 (63%), Positives = 258/333 (77%), Gaps = 5/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV+
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+  +S+FDAKAG
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 298
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 299 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331

>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score =  420 bits (1080), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/333 (63%), Positives = 258/333 (77%), Gaps = 5/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV+
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+  +S+FDAKAG
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 297
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 298 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330

>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate Dehydrogenases: Implication For Nad Binding And Cooperativity Length = 330

Iteration: 1
 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/333 (63%), Positives = 257/333 (77%), Gaps = 5/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV+
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+  +S+FDAKAG
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 297
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           IAL+ NFVKLVSWYD E GYS++V+DLI H++K
Sbjct: 298 IALNDNFVKLVSWYDTETGYSNKVLDLIAHISK 330

>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer Length = 331

Iteration: 1
 Score =  417 bits (1071), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/333 (63%), Positives = 257/333 (77%), Gaps = 5/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 3   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFD-GTVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV+
Sbjct: 61  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNAS TTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 120 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASXTTNCLAPLAKVINDNFGIIEGLMTTVHA 178
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 179 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 238
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+  +S+FDAKAG
Sbjct: 239 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVXTSVFDAKAG 298
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 299 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331

>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score =  412 bits (1058), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/334 (61%), Positives = 250/334 (74%), Gaps = 8/334 (2%)
Query: 9   IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 25  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               V+IS
Sbjct: 85  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           AP KD  PM+V+GVN  EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT 
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLT +L K A+ EEI  A+KE S G +KGI+GYT +DVVSTDF+G   SSIFD  
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKN 321
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           A IAL+ +FVKL+SWYDNE GYS+R++DL V++A
Sbjct: 322 ACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 355

>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Glyceraldehyde-3-Phosphate Dehydrogenase Length = 354

Iteration: 1
 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/334 (61%), Positives = 250/334 (74%), Gaps = 8/334 (2%)
Query: 9   IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 20  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 79
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               V+IS
Sbjct: 80  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 136
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           AP KD  PM+V+GVN  EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 137 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTVHS 196
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT 
Sbjct: 197 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 256
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLT +L K A+ EEI  A+KE S G +KGI+GYT +DVVSTDF+G   SSIFD  
Sbjct: 257 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKN 316
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           A IAL+ +FVKL+SWYDNE GYS+R++DL V++A
Sbjct: 317 ACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 350

>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum At 2.25 Angstrom Resolution Reveals Intriguing Extra Electron Density In The Active Site Length = 345

Iteration: 1
 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/335 (61%), Positives = 249/335 (74%), Gaps = 5/335 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           K+GINGFGRIGRLV R A  R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+   E+   
Sbjct: 13  KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHA 71
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   LL GEK V+VF  ++P +IPW K   + V ESTGVF                V++S
Sbjct: 72  D-GFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 130
Query: 128 APSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           AP KD  P++V+G+N  +Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+ 
Sbjct: 131 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 190
Query: 187 TATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG++FRVP   
Sbjct: 191 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 250
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VSVVDL  RL+K A YEE+   IK+ +EG LKGILGYTE++VVS DFV D+RSSIFD KA
Sbjct: 251 VSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKA 310
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 339
           G+AL+ NF KLVSWYDNEWGYS+RV+DL VH+  +
Sbjct: 311 GLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITTS 345

>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Plasmodium Falciparum Length = 337

Iteration: 1
 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/332 (62%), Positives = 248/332 (74%), Gaps = 5/332 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           K+GINGFGRIGRLV R A  R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+   E+   
Sbjct: 5   KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHA 63
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   LL GEK V+VF  ++P +IPW K   + V ESTGVF                V++S
Sbjct: 64  D-GFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 122
Query: 128 APSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           AP KD  P++V+G+N  +Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH+ 
Sbjct: 123 APPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAS 182
Query: 187 TATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG++FRVP   
Sbjct: 183 TANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPIGT 242
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VSVVDL  RL+K A YEE+   IK+ +EG LKGILGYTE++VVS DFV D+RSSIFD KA
Sbjct: 243 VSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKA 302
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 336
           G+AL+ NF KLVSWYDNEWGYS+RV+DL VH+
Sbjct: 303 GLALNDNFFKLVSWYDNEWGYSNRVLDLAVHI 334

>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde 3-Phosphate Dehydrogenase From Cryptosporidium Parvum Length = 359

Iteration: 1
 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/334 (61%), Positives = 248/334 (74%), Gaps = 8/334 (2%)
Query: 9   IGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVK 67
           +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    E+  K
Sbjct: 25  LGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGK 84
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   L    K V VF  ++P EIPW  +GA+ V ESTGVFT               V+IS
Sbjct: 85  D---LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 128 APSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           AP KD  PM+V+GVN  EY P + +++SNAS TTNCLAPLAK+I+DKFGIVEGLMTTVHS
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKFGIVEGLMTTVHS 201
Query: 186 ITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           +TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGM+ RVPT 
Sbjct: 202 LTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVPTP 261
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           DVSVVDLT +L K A+ EEI  A+KE S G +KGI+GYT +DVVSTDF+G   SSI D  
Sbjct: 262 DVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSILDKN 321
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           A IAL+ +FVKL+SWYDNE GYS+R++DL V++A
Sbjct: 322 ACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 355

>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Toxoplasma Gondii Length = 361

Iteration: 1
 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/339 (59%), Positives = 250/339 (73%), Gaps = 6/339 (1%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G    K+GINGFGRIGRLV R A++R DVE++A+NDPF+S DYM Y+ +YDSVHG +   
Sbjct: 20  GSMVCKLGINGFGRIGRLVFRAAMERGDVEVLAINDPFMSLDYMVYLLRYDSVHGHYP-G 78
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
           E+  KD K L+ G K V VF  + P  IPW + G  Y+ ESTG+F               
Sbjct: 79  EVSHKDGK-LIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAK 137
Query: 123 XVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
            V++SAP KD  PMFV+GVN  +YK    IVSNASCTTNCLAPLAK++HDKFGIVEGLMT
Sbjct: 138 KVIMSAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKFGIVEGLMT 197
Query: 182 TVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           TVH++TA Q TVDGPS   KDWR GR+A  NIIP+STGAAKAVGK++P+LNGKLTGM+FR
Sbjct: 198 TVHAMTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSLNGKLTGMAFR 257
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKE-ESEGKLKGILGYTEEDVVSTDFVGDSRSS 298
           VP  DVSVVDLT +L K A YE+I  A+KE  + G +KGI+ YT+E+VVS+DFV    SS
Sbjct: 258 VPVPDVSVVDLTCKLAKPAKYEDIVAAVKEAATSGPMKGIISYTDEEVVSSDFVHCKFSS 317
Query: 299 IFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           +FD  AGI L+  FVKLVSWYDNEWGYS+R+++L  +M+
Sbjct: 318 VFDINAGIMLNDTFVKLVSWYDNEWGYSNRLVELAHYMS 356

>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate Dehydrogenase From Escherichia Coli: Direct Evidence For Substrate Binding And Cofactor-Induced Conformational Changes Length = 330

Iteration: 1
 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/333 (62%), Positives = 251/333 (75%), Gaps = 5/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DY  Y  KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYXAYXLKYDSTHGRF-DGTVEV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD   ++ G+K + V   R+P  + W + G + V E+TG+F                VV 
Sbjct: 60  KDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  P FV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGL TTVH+
Sbjct: 119 TGPSKDNTPXFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLXTTVHA 177
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTG +FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGXAFRVPTPNV 237
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEK ATYE+IK A+K  +EG+ KG+LGYTE+DVVSTDF G+  +S+FDAKAG
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEXKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 297
Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 298 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330

>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Brucei Determined From Laue Data Length = 359

Iteration: 1
 Score =  360 bits (923), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/349 (54%), Positives = 238/349 (68%), Gaps = 18/349 (5%)
Query: 7   IKIGINGFGRIGRLVARV----ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           IK+GINGFGRIGR+V +      L  +++++VAV D      Y  Y  KYDSVHG++KH+
Sbjct: 3   IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 63  ELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
               K       D+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT       
Sbjct: 63  VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHDK 172
                   VVISAP S  A  FV+GVN   Y P E  +VSNASCTTNCLAPL  V + + 
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FGI  GLMTTVHS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAKAVGMVIPSTQGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGM+FRVPT DVSVVDLT    ++ + +EI  A+K  S+  +K ILGYT+E++VS DF+
Sbjct: 243 LTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILGYTDEELVSADFI 302
Query: 293 GDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
            DSRSSI+D+KA +  +    + F K+VSWYDNEWGYS RV+DL+ HMA
Sbjct: 303 SDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351

>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi Complexed With Chalepin, A Coumarin Derivative Inhibitor Length = 359

Iteration: 1
 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/350 (53%), Positives = 239/350 (68%), Gaps = 20/350 (5%)
Query: 7   IKIGINGFGRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
           IK+GINGFGRIGR+V + AL  D     ++++VAV D     +Y  Y  +YD+VHG++K+
Sbjct: 3   IKVGINGFGRIGRMVFQ-ALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62  NELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX 114
                K       D+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT      
Sbjct: 62  EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 XXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHD 171
                    VVISAP S  A   V+GVN  EY P E  +VSNASCTTNCLAP+  V + +
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKE 181
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNG 231
            FG+  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 232 KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           KLTGMSFRVPT DVSVVDLT    ++ + +EI  A+K  S+  +KGILGYT+E++VS DF
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADF 301
Query: 292 VGDSRSSIFDAKA----GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           + D+RSSI+D+KA     +   + F K+VSWYDNEWGYS RV+DL+ HMA
Sbjct: 302 INDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351

>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Trypanosoma Cruzi In Complex With The Irreversible Iodoacetate Inhibitor Length = 359

Iteration: 1
 Score =  350 bits (898), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 185/350 (52%), Positives = 238/350 (68%), Gaps = 20/350 (5%)
Query: 7   IKIGINGFGRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
           IK+GINGFGRIGR+V + AL  D     ++++VAV D     +Y  Y  +YD+VHG++K+
Sbjct: 3   IKVGINGFGRIGRMVFQ-ALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 62  NELKVK-------DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX 114
                K       D+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT      
Sbjct: 62  EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 115 XXXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHD 171
                    VVISAP S  A   V+GVN  EY P E  +VSNAS TTNCLAP+  V + +
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKE 181
Query: 172 KFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNG 231
            FG+  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  G
Sbjct: 182 GFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQG 241
Query: 232 KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDF 291
           KLTGMSFRVPT DVSVVDLT    ++ + +EI  A+K  S+  +KGILGYT+E++VS DF
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADF 301
Query: 292 VGDSRSSIFDAKA----GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           + D+RSSI+D+KA     +   + F K+VSWYDNEWGYS RV+DL+ HMA
Sbjct: 302 INDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMA 351

>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A Monoclinic Crystal Form Length = 360

Iteration: 1
 Score =  344 bits (882), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 181/353 (51%), Positives = 239/353 (67%), Gaps = 18/353 (5%)
Query: 7   IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           IK+GINGFGRIGR+V +    +     ++++VAV D   + +Y  Y  K+D+VHG+ K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 63  ELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
              VK   ++       + G +   V   RNP ++PW K G +YV+ESTG+FT       
Sbjct: 63  VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
                   VVISAP S  A   V+GVN+ EY P    +VSNASCTTNCLAP+  V+  + 
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FGI  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGMSFRVPT DVSVVDLT R  ++ + +EI  AIK+ ++  +KGILG+T+E++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFI 302
Query: 293 GDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
            D+RSS++D+KA +  +    K F K+VSWYDNEW YS RV+DL+ +MA   A
Sbjct: 303 NDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMAAKDA 355

>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase From Leishmania Mexicana: Implications For Structure-Based Drug Design And A New Position For The Inorganic Phosphate Binding Site Length = 358

Iteration: 1
 Score =  344 bits (882), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 181/353 (51%), Positives = 239/353 (67%), Gaps = 18/353 (5%)
Query: 7   IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           IK+GINGFGRIGR+V +    +     ++++VAV D   + +Y  Y  K+D+VHG+ K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYT 62
Query: 63  ELKVKDEKTL-------LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXX 115
              VK   ++       + G +   V   RNP ++PW K G +YV+ESTG+FT       
Sbjct: 63  VEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEG 122
Query: 116 XXXXXXXXVVISAP-SKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVI-HDK 172
                   VVISAP S  A   V+GVN+ EY P    +VSNASCTTNCLAP+  V+  + 
Sbjct: 123 HIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKEN 182
Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FGI  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGK 242
Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGMSFRVPT DVSVVDLT R  ++ + +EI  AIK+ ++  +KGILG+T+E++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADFI 302
Query: 293 GDSRSSIFDAKAGIALS----KNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
            D+RSS++D+KA +  +    K F K+VSWYDNEW YS RV+DL+ +MA   A
Sbjct: 303 NDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMAAKDA 355

>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Stearothermophilus At 1.8 Angstroms Resolution Length = 334

Iteration: 1
 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/333 (50%), Positives = 224/333 (67%), Gaps = 6/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G + SS  DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
            + +    VK+VSWYDNE GYS RV+DL  ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330

>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu 33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  317 bits (812), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 169/333 (50%), Positives = 224/333 (67%), Gaps = 6/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDTG-GANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D  S KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G + SS  DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
            + +    VK+VSWYDNE GYS RV+DL  ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330

>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp 32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  316 bits (810), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/333 (50%), Positives = 223/333 (66%), Gaps = 6/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVN      + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVNG-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D  S KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDA-SHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G + SS  DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
            + +    VK+VSWYDNE GYS RV+DL  ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330

>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ala Complexed With Nad+ Length = 334

Iteration: 1
 Score =  315 bits (807), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/333 (50%), Positives = 223/333 (66%), Gaps = 6/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G + SS  DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
            + +    VK+VSWYDNE GYS RV+DL  ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330

>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys 149 Replaced By Ser Complexed With Nad+ Length = 334

Iteration: 1
 Score =  315 bits (806), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/333 (50%), Positives = 223/333 (66%), Gaps = 6/333 (1%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
                ++ G K + V   R+PE + W + G + VVESTG FT               V+I
Sbjct: 60  NGNNLVVNG-KEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+  +  V+GVN+ +Y P+   ++SNAS TTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQFGIVRGMMTTVH 178
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G + SS  DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
            + +    VK+VSWYDNE GYS RV+DL  ++A
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIA 330

>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate Dehydrogenase From The Hyperthermophilic Bacterium Thermotoga Maritima At 2.5 Angstroms Resolution Length = 332

Iteration: 1
 Score =  305 bits (781), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/335 (47%), Positives = 221/335 (65%), Gaps = 9/335 (2%)
Query: 8   KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           ++ INGFGRIGRLV R+  +R   D+E+VA+ND    T  + ++ KYDSVH ++     K
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57
Query: 66  VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
           V+  E +L+   K + VF   +P ++PW   G ++V+ESTGVF                V
Sbjct: 58  VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117
Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           +I+AP+K   +  V+G NE + KPE  I+S ASCTTN +AP+ KV+H+KFGIV G++TTV
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTV 177
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HS T  Q+ +D P  KD R  RAA+ NIIP++TGAAKAV  V+P + GKL GM+ RVPT 
Sbjct: 178 HSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTP 236
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           D S+ DLTV +EKE T EE+   +KE +EG+LKGI+GY +E +VS+D +G + S IFDA 
Sbjct: 237 DGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDAT 296
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +    VK+ SWYDNE+GYS+RV+D +  + K
Sbjct: 297 ITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLLK 331

>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate Dehydrogenase From Brucella Melitensis Length = 335

Iteration: 1
 Score =  293 bits (749), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/335 (45%), Positives = 217/335 (64%), Gaps = 7/335 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
           +++ INGFGRIGR + R  ++  R D+++VA+ND     +   ++ +YDSVHG++   E+
Sbjct: 3   VRVAINGFGRIGRNILRAIVESGRTDIQVVAIND-LGPVETNAHLLRYDSVHGRFP-KEV 60
Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
           +V  + T+  G  P+ V   RNP E+PW +   +  +E TG+FT               V
Sbjct: 61  EVAGD-TIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 125 VISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           ++SAP+  A + VV GVN  +   +  ++SNASCTTNCLAP+A+V++D  GI +G MTT+
Sbjct: 120 IVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTTI 179
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HS T  Q T+D    KD    RAA+ ++IP+STGAAKAVG VLP L GKL G++ RVPT 
Sbjct: 180 HSYTGDQPTLD-TMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPTP 238
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           +VSVVDLT   ++E T EE+ NAI+E + G+LKGILGYT+E +VS DF  DS SS+F   
Sbjct: 239 NVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTD 298
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +    V+++SWYDNEWG+SSR+ D  V + K
Sbjct: 299 QTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALGK 333

>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Borrelia Burgdorferi Length = 356

Iteration: 1
 Score =  288 bits (737), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 158/344 (45%), Positives = 224/344 (65%), Gaps = 13/344 (3%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G   +K+ INGFGRIGR V ++A +R  +++VA+ND       + ++ KYDS  G + + 
Sbjct: 18  GPGSMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVY-NK 74
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXX-----XXX 117
           +++ +D   ++ G + + +   R+P+ +PWAK G + V+ESTGVF+              
Sbjct: 75  KVESRDGAIVVDG-REIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVN 133
Query: 118 XXXXXXVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV 176
                 V+++ P+KD     V+GVN+ +   +L  VSNASCTTNCLAPLAKV+H+ FGI 
Sbjct: 134 HAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIE 193
Query: 177 EGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM 236
           +GLMTTVH+ T  Q+ +D P   D R  RAA+ +IIP+STGAAKAVG VLP L GKL G 
Sbjct: 194 QGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGT 252
Query: 237 SFRVPTVDVSVVDLTVRL-EKEATYEEIKNAIKEESEG-KLKGILGYTEEDVVSTDFVGD 294
           S RVP    S+VDLTV+L +K+ T EEI + +++ SE  +LKGILGYTE+ +VS+D  G+
Sbjct: 253 SMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGN 312
Query: 295 SRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           S SSI D    + L   F K++SWYDNE+GYS+RV+DL   + K
Sbjct: 313 SHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 356

>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex Aeolicus Vf5 Length = 342

Iteration: 1
 Score =  286 bits (733), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 154/342 (45%), Positives = 226/342 (66%), Gaps = 15/342 (4%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR   R +  R+++E+VA+ND      ++ ++ KYDSVHG +K   ++ 
Sbjct: 3   IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFK-GSVEA 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
           KD+  ++ G K + VF  ++P +IPW   G + V+E+TGVF                V+I
Sbjct: 61  KDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 127 SAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K+  + VV GVNE++Y P E +I+SNASCTTNCLAP  KV+++ FG+ +G M TVH
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVH 179
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           + T  Q+ +D P  KD+R  RAA+ NI+P++TGAAKA+G+V+P L GKL G + RVP  D
Sbjct: 180 AYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPD 238
Query: 245 VSVVDLTVRLEK-EATYEEIKNAIKEESE-----GK--LKGILGYTEEDVVSTDFVGDSR 296
            S++DLTV + K  ++ EE+    +E ++     GK  LK IL Y E+ +VSTD VG+  
Sbjct: 239 GSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPH 298
Query: 297 SSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           S+IFDA     +  N V + +WYDNEWGYS R+ DL++++A+
Sbjct: 299 SAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLAE 339

>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate Dehydrogenase From Bartonella Henselae With Bound Nad Length = 356

Iteration: 1
 Score =  275 bits (704), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/340 (43%), Positives = 206/340 (60%), Gaps = 7/340 (2%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           G   +++ INGFGRIGR + R  ++  R D+E+VA+ND   S +   ++ +YDSVHG + 
Sbjct: 20  GSMSVRVAINGFGRIGRNILRAIIESGRQDIEVVALND-LGSVETNAHLLRYDSVHGCFP 78
Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXX 120
                V D   +  G   + VF  R+P ++PW     +  +E TG+FT            
Sbjct: 79  GTVQVVGD--AIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAG 136
Query: 121 XXXVVISAPSKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
              V++SAPS+ A + VV GVN +    E  ++SNASCTTNCLAP+A+V+H+  GI +G 
Sbjct: 137 AKRVLVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGF 196
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTT+HS T  Q  +D    +D    RAA+ ++IP+STGAAKAVG VLP L G L G+S R
Sbjct: 197 MTTIHSYTGDQPVLD-TMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIR 255
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           VPT +VSVVDLT   ++  T EEI  AI+  ++G LKGIL YT+E +VS DF  +  S+I
Sbjct: 256 VPTPNVSVVDLTFTAKRSTTIEEINTAIRTAAQGSLKGILDYTDEKLVSCDFNHNPHSAI 315
Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 339
           F       +     +++ WYDNEWG+S+R+ D  V  AKT
Sbjct: 316 FHNDQTKVIDGQLCRVLVWYDNEWGFSNRMCDTAVAFAKT 355

>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase, Complexed With Nadp Length = 368

Iteration: 1
 Score =  267 bits (683), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 155/333 (46%), Positives = 213/333 (63%), Gaps = 9/333 (2%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V VND        T++ KYDS+ G +K  +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILGTFKA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K+ D +T     KP+ V   R+P ++PWA+ G + V+E TGVF                
Sbjct: 59  VKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKK 118
Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPEL-DIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+I+AP+K  D P +VVGVNEK+Y  ++ +I+SNASCTTNCLAP  KV+ ++ GIV+G M
Sbjct: 119 VIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTM 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G++ RV
Sbjct: 179 TTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRV 237
Query: 241 PTVDVSVVDLTVRLEKEA-TYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           PT +VSVVDL V +EK   T E++ NA ++ + G LKG+L   +  +VS DF     SS 
Sbjct: 238 PTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSST 297
Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
            D+   + +  + VK+V+WYDNEWGYS RV+DL
Sbjct: 298 IDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDL 330

>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The Molecular Structure Of Thermus Aquaticus D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5 Angstroms Resolution Length = 331

Iteration: 1
 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/329 (46%), Positives = 209/329 (63%), Gaps = 8/329 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R+ L    VE+  +ND       + ++ KYDS++ ++   E+  
Sbjct: 1   MKVGINGFGRIGRQVFRI-LHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFP-GEVAY 57
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D+   + G K +     ++P+EIPWA+ G   V+ESTGVFT               V+I
Sbjct: 58  DDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K   +  V+GVN + Y P    I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GM+ RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
            S+ D+T  L++E T EE+  A+K  +EG LKGIL YTE+++V  D V D  SSI DAK 
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKL 295
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLI 333
             AL  N VK+ +WYDNEWGY++RV DL+
Sbjct: 296 TKALG-NMVKVFAWYDNEWGYANRVADLV 323

>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase From Bacillus Anthracis Str. Sterne Length = 345

Iteration: 1
 Score =  264 bits (675), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 144/323 (44%), Positives = 208/323 (64%), Gaps = 6/323 (1%)
Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           ++ INGFGRIGR+V R A++    E+VA+N  + S + + ++ KYD+VHG++       +
Sbjct: 6   RVAINGFGRIGRMVFRQAIKESAFEIVAINASYPS-ETLAHLIKYDTVHGKFDGTVEAFE 64
Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVIS 127
           D   LL   K + +   R+P+E+PW   G E V+E+TG F                V+++
Sbjct: 65  DH--LLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILT 122
Query: 128 APSKDAPM-FVVGVNEKEYK-PELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           AP K+  +  VVGVNE +    +  ++SNASCTTNCLAP+ KV+ ++FGI  GLMTTVH+
Sbjct: 123 APGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTVHA 182
Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GM+ RVPT +V
Sbjct: 183 YTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTPNV 241
Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           S+VDL V ++++ T E I +A K  + G LKGI+ ++EE +VS DF  ++ S+I D  + 
Sbjct: 242 SLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLST 301
Query: 306 IALSKNFVKLVSWYDNEWGYSSR 328
           + +    VK+++WYDNEWGYS R
Sbjct: 302 MVMGDRKVKVLAWYDNEWGYSRR 324

>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Thermus Thermophilus Hb8 Length = 331

Iteration: 1
 Score =  264 bits (674), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 153/329 (46%), Positives = 207/329 (62%), Gaps = 8/329 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R+  +R  VE+  +ND       + ++ KYDS +G++       
Sbjct: 1   MKVGINGFGRIGRQVFRILHERG-VEVALIND-LTDNKTLAHLLKYDSTYGRFP--GAVG 56
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            DE+ L    K +     ++P EIPW + G   VVESTGVFT               V+I
Sbjct: 57  YDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKVII 116
Query: 127 SAPSKDAPMFVV-GVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K+  + VV GVN ++Y P +  I+SNASCTTN LAP+ KV+   FG+ + LMTTVH
Sbjct: 117 TAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GM+ RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAALNIIPTTTGAAKATALVLPSLKGRFDGMALRVPTPT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
            S+ D+T  L++E T EE+  A+K  +EG LKGIL YTE+++V  D V D  SSI D K 
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRDIVMDPHSSIVDGKL 295
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLI 333
             A+  N VK+ +WYDNEWGY++RV DL+
Sbjct: 296 TKAIG-NLVKVFAWYDNEWGYANRVADLV 323

>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase, Type I From Burkholderia Pseudomallei Length = 344

Iteration: 1
 Score =  261 bits (667), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 206/339 (60%), Gaps = 10/339 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           I++ ING+GRIGR   R   +   + D+E+VA+ND         ++ +YD+ HG++   E
Sbjct: 11  IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAIND-LGDAKTNAHLTQYDTAHGKFP-GE 68
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           + V  +  ++ G++ + V   RNP E+PW + G + V+E TG FT               
Sbjct: 69  VSVDGDYLVVNGDR-IRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKK 127
Query: 124 VVISAPS-KDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
           V+ISAP  KD    +V GVN    K E  ++SNASCTTNCLAPL K ++DK G+  GLMT
Sbjct: 128 VIISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVKPLNDKIGLETGLMT 187
Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241
           T+H+ T  Q   D    +D R  R+A+ + IP+ TGAA AVG VLP LNGKL G + RVP
Sbjct: 188 TIHAYTNDQVLTD-VYHEDLRRARSATHSQIPTKTGAAAAVGLVLPELNGKLDGYAIRVP 246
Query: 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFD 301
           T++VS+VDL+   +++ T  E+   +KE SEG LKGILGY E  +VS DF  +  SS FD
Sbjct: 247 TINVSIVDLSFIAKRDTTAAEVNAIMKEASEGALKGILGYNEAPLVSIDFNHNPASSTFD 306
Query: 302 AKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           A     +S   VK+ SWYDNEWG+S+R++D  + +A  +
Sbjct: 307 ATL-TKVSGRLVKVSSWYDNEWGFSNRMLDTAIALANAK 344

>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's Loop Motion In Catalysis Length = 331

Iteration: 1
 Score =  260 bits (664), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 152/329 (46%), Positives = 208/329 (63%), Gaps = 8/329 (2%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R+ L    VE+  +ND       + ++ KYDS++ ++   E+  
Sbjct: 1   MKVGINGFGRIGRQVFRI-LHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFP-GEVAY 57
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D+   + G K +     ++P+EIPWA+ G   V+ESTGVFT               V+I
Sbjct: 58  DDQYLYVDG-KAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 127 SAPSKDAPM-FVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K   +  V+GVN + Y P    I+SNAS TTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAFGVEKALMTTVH 176
Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GM+ RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235
Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
            S+ D+T  L++E T EE+  A+K  +EG LKGIL YTE+++V  D V D  SSI DAK 
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKL 295
Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLI 333
             AL  N VK+ +WYDNEWGY++RV DL+
Sbjct: 296 TKALG-NMVKVFAWYDNEWGYANRVADLV 323

>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337

Iteration: 1
 Score =  259 bits (663), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF     SS  D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
              + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327

>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By The Crystal Structure Of A4 Isoform Complexed With Nad Length = 337

Iteration: 1
 Score =  259 bits (662), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF     SS  D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
              + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327

>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase, Complexed With Nadp Length = 365

Iteration: 1
 Score =  259 bits (661), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/330 (44%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF     SS  D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
              + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327

>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp Length = 337

Iteration: 1
 Score =  258 bits (659), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/330 (44%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF                
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  + +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDA-AHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF     SS  D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
              + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 327

>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of Spinach Chloroplast Glyceraldehyde-3-Phosphate Dehydrogenase Complexed With Nadp Length = 335

Iteration: 1
 Score =  257 bits (657), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 148/329 (44%), Positives = 202/329 (61%), Gaps = 6/329 (1%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
           K+K+ INGFGRIGR   R    +D  +++V +ND        +++ KYDS+ G +   ++
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-DV 58
Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXV 124
           K   +  +  G K + V   RNP  +PW   G + V+E TGVF                V
Sbjct: 59  KTAGDSAISVG-KVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 117
Query: 125 VISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           +I+AP K D P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT 
Sbjct: 118 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTT 177
Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           HS T  Q+ +D  S +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT 
Sbjct: 178 HSYTGDQRLLDA-SHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTP 236
Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF     SS  D+ 
Sbjct: 237 NVSVVDLVVQVSKKTFAEEVNAAFRESADQELKGILSVCDEPLVSIDFRCTDVSSTIDSS 296
Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
             + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 297 LTMVMGDDMVKVIAWYDNEWGYSQRVVDL 325

>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese Length = 339

Iteration: 1
 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 147/333 (44%), Positives = 214/333 (64%), Gaps = 13/333 (3%)
Query: 7   IKIGINGFGRIGRLVARV--ALQRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
           I++ INGFGRIGR   R     Q  D+E+VA+N+   ++D  T  ++ +YDSV G++  N
Sbjct: 3   IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRF--N 57
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
                DE ++    K + +   RNP  +PW +   + V+ESTGVF               
Sbjct: 58  ADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 123 XVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
            V+I+AP K   +  +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 118 KVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G++ R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           VPT +VSVVDL V++EK    E++   +++ S+  +KGI+ Y++  +VS+DF G   SSI
Sbjct: 237 VPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSI 296
Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
            D+   + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 297 VDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDL 329

>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3- Phosphate Dehydrogenase From Synechococcus Sp. Complexed With Nadp+ Length = 380

Iteration: 1
 Score =  252 bits (643), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 147/333 (44%), Positives = 214/333 (64%), Gaps = 13/333 (3%)
Query: 7   IKIGINGFGRIGRLVARV--ALQRDDVELVAVNDPFISTDYMT--YMFKYDSVHGQWKHN 62
           I++ INGFGRIGR   R     Q  D+E+VA+N+   ++D  T  ++ +YDSV G++  N
Sbjct: 3   IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN---TSDARTAAHLLEYDSVLGRF--N 57
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
                DE ++    K + +   RNP  +PW +   + V+ESTGVF               
Sbjct: 58  ADISYDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAK 117
Query: 123 XVVISAPSKDAPM--FVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
            V+I+AP K   +  +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G 
Sbjct: 118 KVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGT 177
Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTT HS T  Q+ +D  S +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G++ R
Sbjct: 178 MTTTHSYTLDQRILDA-SHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALR 236
Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           VPT +VSVVDL V++EK    E++   +++ S+  +KGI+ Y++  +VS+DF G   SSI
Sbjct: 237 VPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSI 296
Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
            D+   + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 297 VDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDL 329

>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate Dehydrogenase From Alcaligenes Xylosoxidans At 1.7 Resolution. Length = 335

Iteration: 1
 Score =  243 bits (621), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 198/336 (58%), Gaps = 12/336 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           I++ ING+GRIGR + R   +     D+E+VA+ND         ++ +YD+ HG++    
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFP-GT 59
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           + V     ++ G+K + V   RNP ++PW     + V+E TG FT               
Sbjct: 60  VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118
Query: 124 VVISAPSK---DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+ISAP     DA + V GVN    K    ++SNAS TTNCLAPL K ++DK G+ +GLM
Sbjct: 119 VIISAPGGADVDATV-VYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKLGLQDGLM 177
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ T  Q   D    +D R  R+A+ ++IP+ TGAA AVG VLP L+GKL G + RV
Sbjct: 178 TTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRV 236
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT++VS+VDL+   ++  T EE+   +K  SEG+LKGIL Y  E +VS D+  D  SS  
Sbjct: 237 PTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTV 296
Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHM 336
           DA     +S   VK+ SWYDNEWG+S+R++D  V +
Sbjct: 297 DASL-TKVSGRLVKVSSWYDNEWGFSNRMLDTTVAL 331

>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal Space Group Length = 344

Iteration: 1
 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 140/342 (40%), Positives = 204/342 (59%), Gaps = 13/342 (3%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G   +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   
Sbjct: 7   GSMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-G 64
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
           E++V D    + G K V  F   +  ++PW     + V+E TG +T              
Sbjct: 65  EVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAK 123
Query: 123 XVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
            V+ISAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMT
Sbjct: 124 KVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMT 183
Query: 182 TVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           T+H+ T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RV
Sbjct: 184 TIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRV 243
Query: 241 PTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           P    S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+
Sbjct: 244 PVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSL 299
Query: 300 FDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           FDA     +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 300 FDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 341

>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin Resistant Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution Length = 338

Iteration: 1
 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 140/342 (40%), Positives = 204/342 (59%), Gaps = 13/342 (3%)
Query: 3   GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
           G   +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   
Sbjct: 1   GSMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-G 58
Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
           E++V D    + G K V  F   +  ++PW     + V+E TG +T              
Sbjct: 59  EVEVVDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAK 117
Query: 123 XVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
            V+ISAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMT
Sbjct: 118 KVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMT 177
Query: 182 TVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           T+H+ T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RV
Sbjct: 178 TIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRV 237
Query: 241 PTVDVSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           P    S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+
Sbjct: 238 PVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSL 293
Query: 300 FDAKAGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           FDA     +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 294 FDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 335

>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With Nad, From Arabidopsis Thaliana Length = 337

Iteration: 1
 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 147/330 (44%), Positives = 202/330 (61%), Gaps = 6/330 (1%)
Query: 6   KIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G +   +
Sbjct: 2   KLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDA-D 59
Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXX 123
           +K   E  +    K + V   RNP  +PW + G + V+E TGVF                
Sbjct: 60  VKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKK 119
Query: 124 VVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K D P +VVGVN   Y  +  I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 120 VIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 179
Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D  S +D R  RAA+ NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 180 THSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 238
Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VSVVDL V++ K+   EE+  A ++ +E +LKGIL   +E +VS DF     S+  D+
Sbjct: 239 PNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDS 298
Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDL 332
              + +  + VK+++WYDNEWGYS RV+DL
Sbjct: 299 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDL 328

>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicllin Resistant Staphylococcus Aureus (Mrsa252) Length = 339

Iteration: 1
 Score =  241 bits (614), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 139/338 (41%), Positives = 203/338 (60%), Gaps = 13/338 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 6   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 63
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 64  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 123 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 182
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 183 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 242
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+FDA 
Sbjct: 243 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 298
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 299 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 336

>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252 At 2.5 Angstrom Resolution Length = 336

Iteration: 1
 Score =  241 bits (614), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 139/338 (41%), Positives = 203/338 (60%), Gaps = 13/338 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+FDA 
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333

>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.0 Angstrom Resolution. Length = 336

Iteration: 1
 Score =  238 bits (607), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/338 (40%), Positives = 203/338 (60%), Gaps = 13/338 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+FDA 
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333

>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1) Complexed With Nad From Staphylococcus Aureus Mrsa252 At 2.2 Angstrom Resolution Length = 336

Iteration: 1
 Score =  236 bits (603), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/338 (40%), Positives = 202/338 (59%), Gaps = 13/338 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+FDA 
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333

>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde 3-Phosphate Dehydrogenase 1 From Methicillin Resistant Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom Resolution Length = 336

Iteration: 1
 Score =  236 bits (602), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/338 (40%), Positives = 202/338 (59%), Gaps = 13/338 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDFGLVEGLMTTIHA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+FDA 
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333

>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2 Angstrom Resolution Length = 336

Iteration: 1
 Score =  233 bits (595), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 137/338 (40%), Positives = 202/338 (59%), Gaps = 13/338 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 3   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFT-GEVEV 60
Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVI 126
            D    + G K V  F   +  ++PW     + V+E TG +T               V+I
Sbjct: 61  VDGGFRVNG-KEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS AS TTN LAP+AKV++D FG+VEGLMTT+++
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDFGLVEGLMTTINA 179
Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 180 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 239
Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+FDA 
Sbjct: 240 GSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDAT 295
Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 296 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 333

>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339

Iteration: 1
 Score =  212 bits (540), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 188/337 (55%), Gaps = 11/337 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 3   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 64  LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
            +V+ E+  LF G+  + V   R+ + +PW + G + V++ TGV+               
Sbjct: 59  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
            V+ S P S D    VV GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D  S+I 
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIV 297
Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           D         + +K + W DNEWG+++R++D  + MA
Sbjct: 298 DGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334

>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase From E.Coli In Complex With A Nad Cofactor Analog (3- Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate Anion Length = 338

Iteration: 1
 Score =  212 bits (540), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 117/337 (34%), Positives = 188/337 (55%), Gaps = 11/337 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 2   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 57
Query: 64  LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
            +V+ E+  LF G+  + V   R+ + +PW + G + V++ TGV+               
Sbjct: 58  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 117
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
            V+ S P S D    VV GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +
Sbjct: 118 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 177
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RV
Sbjct: 178 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 236
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D  S+I 
Sbjct: 237 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIV 296
Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           D         + +K + W DNEWG+++R++D  + MA
Sbjct: 297 DGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 333

>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The D-Erythrose-4-Phosphate Dehydrogenase From E. Coli Length = 339

Iteration: 1
 Score =  203 bits (517), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 186/337 (55%), Gaps = 11/337 (3%)
Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           +++ INGFGRIGR V R   +   R ++ +VA+N+       M ++ KYD+ HG++    
Sbjct: 3   VRVAINGFGRIGRNVVRALYESGRRAEITVVAINE-LADAAGMAHLLKYDTSHGRFA--- 58
Query: 64  LKVKDEKTLLF-GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXX 122
            +V+ E+  LF G+  + V   R+ + +PW + G + V++ TGV+               
Sbjct: 59  WEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118
Query: 123 XVVISAP-SKDAPMFVV-GVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
            V+ S P S D    VV GVN+ + + E  IVSNAS TTN + P+ K++ D +GI  G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAYGIESGTV 178
Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RV
Sbjct: 179 TTIHSAMHDQQVIDA-YHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237
Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D  S+I 
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIV 297
Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMA 337
           D         + +K + W DNEWG+++R++D  + MA
Sbjct: 298 DGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA 334

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	0.0
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	0.0
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	0.0
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	0.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	0.0
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	0.0
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	0.0
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	0.0
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	0.0
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	0.0
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	0.0
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	0.0
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	0.0
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	0.0
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	0.0
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	0.0
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	0.0
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	0.0
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	0.0
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	1e-180
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	1e-177
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	1e-137
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	1e-115
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	1e-111
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	6e-72
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	2e-08
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	3e-07
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	3e-06
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	1e-05
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	3e-05
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	7e-05
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	9e-05
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	9e-05
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	9e-05
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	1e-04
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	1e-04
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	2e-04
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	3e-04
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	4e-04
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	4e-04
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	6e-04
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	6e-04
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	7e-04
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	8e-04
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	9e-04

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O Length = 337

 Score =  703 bits (1818), Expect = 0.0
 Identities = 292/340 (85%), Positives = 316/340 (92%), Gaps = 3/340 (0%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           M    KIKIGINGFGRIGRLVARVALQ +DVELVAVNDPFI+TDYMTYMFKYD+VHGQWK
Sbjct: 1   MG---KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWK 57

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
           H+++K+KD KTLL GEKPV VFG RNP+EIPWA+ GAEYVVESTGVFTDK+KAAAHLKGG
Sbjct: 58  HSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGG 117

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AKKVVISAPSKDAPMFV GVNE +Y  ++DIVSNASCTTNCLAPLAKVIHD FGI+EGLM
Sbjct: 118 AKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLM 177

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGMSFRV
Sbjct: 178 TTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRV 237

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PTVDVSVVDLTVR+EK A+Y+ IK+AIK  SEGKLKGI+GY EED+VSTDFVGDSRSSIF
Sbjct: 238 PTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIF 297

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ 340
           DAKAGIAL+ NFVKLV+WYDNEWGYS+RVIDLI HMAKTQ
Sbjct: 298 DAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* Length = 332

 Score =  692 bits (1789), Expect = 0.0
 Identities = 224/333 (67%), Positives = 269/333 (80%), Gaps = 2/333 (0%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +++ INGFGRIGRLV R+AL R +VE+VA+NDPFI+ DY  YMFKYDS HG++   E+  
Sbjct: 2   VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAG-EVSH 60

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D+  ++   K +A +  R+P  +PW  +  +  ++STGVF + D A  H+  GAKKVVI
Sbjct: 61  DDKH-IIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119

Query: 127 SAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSI 186
           +APS  APMFV+GVNE++Y  +L IVSNASCTTNCLAPLAKVI+D FGI EGLMTTVHS+
Sbjct: 120 TAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSL 179

Query: 187 TATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVS 246
           TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP L GKLTGM+FRVPTVDVS
Sbjct: 180 TATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVS 239

Query: 247 VVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGI 306
           VVDLTV+L KE TY+EIK  +K  +EGKLKG+LGYTE+ VVS+DF+GDS SSIFDA AGI
Sbjct: 240 VVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGI 299

Query: 307 ALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 339
            LS  FVKLVSWYDNE+GYS+RV+DL+ H+AK 
Sbjct: 300 QLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAKA 332

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* Length = 346

 Score =  685 bits (1770), Expect = 0.0
 Identities = 212/342 (61%), Positives = 268/342 (78%), Gaps = 4/342 (1%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           ++  +++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K
Sbjct: 2   VSVARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK 60

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
              ++ ++ + L+     ++V+  + P++IPW   G+ YVVESTGV+     A+ H+  G
Sbjct: 61  G-SVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAG 118

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
           A++VVISAPS DAPMFV+GVNE +Y P  ++IVSNASCTTNCLAPLAKVIH++FGIVEGL
Sbjct: 119 AQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGL 178

Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTTVHS TATQKTVDGPS K WR GR A  NIIP+STGAAKAV KV+P L GKLTGM+FR
Sbjct: 179 MTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFR 238

Query: 240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSI 299
           VPT DVSVVDLT RL + A Y  IK A+K  ++G + GIL YTE++VVSTDF+GD+ SSI
Sbjct: 239 VPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSI 298

Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
           FDAKAGIAL+ NFVKL+SWYDNE+GYS RV+DL+ +M    A
Sbjct: 299 FDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMFSRDA 340

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* Length = 354

 Score =  684 bits (1767), Expect = 0.0
 Identities = 214/337 (63%), Positives = 264/337 (78%), Gaps = 6/337 (1%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           +  +GINGFGRIGRLV R  ++R+D+ +VA+NDPF+  +YM Y+ KYDSVHG +    ++
Sbjct: 17  QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNG-TVE 75

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
           V  +  L    K V VF  ++P EIPW  +GA+ V ESTGVFT ++KA+ HLKGGAKKV+
Sbjct: 76  VSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVI 134

Query: 126 ISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           ISAP KD  PM+V+GVN  EY P + +++SNASCTTNCLAPLAK+I+DKFGIVEGLMTTV
Sbjct: 135 ISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKFGIVEGLMTTV 194

Query: 184 HSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241
           HS+TA Q TVDGPS   KDWR GR A  NIIP+STGAAKAVGKV+PALNGKLTGM+ RVP
Sbjct: 195 HSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRVP 254

Query: 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFD 301
           T DVSVVDLT +L K A+ EEI  A+KE S G +KGI+GYT +DVVSTDF+G   SSIFD
Sbjct: 255 TPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFD 314

Query: 302 AKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
             A IAL+ +FVKL+SWYDNE GYS+R++DL V++A 
Sbjct: 315 KNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVAS 351

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* Length = 330

 Score =  681 bits (1761), Expect = 0.0
 Identities = 218/333 (65%), Positives = 265/333 (79%), Gaps = 5/333 (1%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KD   ++ G K + V   R+P  + W + G + V E+TG+F   + A  H+  GAKKVV+
Sbjct: 60  KDGHLIVNG-KKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           + PSKD  PMFV G N  +Y  + DIVSNASCTTNCLAPLAKVI+D FGI+EGLMTTVH+
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHA 177

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
            TATQKTVDGPS KDWRGGR AS NIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPT +V
Sbjct: 178 TTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNV 237

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAG 305
           SVVDLTVRLEK ATYE+IK A+K  +EG++KG+LGYTE+DVVSTDF G+  +S+FDAKAG
Sbjct: 238 SVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAG 297

Query: 306 IALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           IAL+ NFVKLVSWYDNE GYS++V+DLI H++K
Sbjct: 298 IALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 330

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* Length = 345

 Score =  682 bits (1762), Expect = 0.0
 Identities = 216/337 (64%), Positives = 262/337 (77%), Gaps = 5/337 (1%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             K+GINGFGRIGRLV R A  R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+   E+ 
Sbjct: 11  ATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPC-EVT 69

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             D   LL GEK V+VF  ++P +IPW K   + V ESTGVF  K+ A++HLKGGAKKV+
Sbjct: 70  HADGF-LLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVI 128

Query: 126 ISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +SAP KD  P++V+G+N  +Y  +  IVSNASCTTNCLAPLAKVI+D+FGIVEGLMTTVH
Sbjct: 129 MSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVH 188

Query: 185 SITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           + TA Q  VDGPS   KDWR GR A  NIIP+STGAAKAVGKVLP LNGKLTG++FRVP 
Sbjct: 189 ASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFRVPI 248

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
             VSVVDL  RL+K A YEE+   IK+ +EG LKGILGYTE++VVS DFV D+RSSIFD 
Sbjct: 249 GTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDM 308

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 339
           KAG+AL+ NF KLVSWYDNEWGYS+RV+DL VH+  +
Sbjct: 309 KAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITTS 345

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 Length = 335

 Score =  679 bits (1754), Expect = 0.0
 Identities = 225/338 (66%), Positives = 269/338 (79%), Gaps = 5/338 (1%)

Query: 1   MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWK 60
           M    K+K+G+NGFGRIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++ 
Sbjct: 1   MG---KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH 57

Query: 61  HNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGG 120
              +K ++ K L+    P+ +F  R+P +I W   GAEYVVESTGVFT  +KA AHL+GG
Sbjct: 58  G-TVKAENGK-LVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG 115

Query: 121 AKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           AK+V+ISAPS DAPMFV+GVN ++Y   L I+SNASCTTNCLAPLAKVIHD FGIVEGLM
Sbjct: 116 AKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLM 175

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TTVH+ITATQKTVDGPS K WR GR A  NIIP+STGAAKAVGKV+P LNGKLTGM+FRV
Sbjct: 176 TTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRV 235

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT +VSVVDLT RLEK A Y++IK  +K+ SEG LKGILGYTE  VVS+DF  D+ SS F
Sbjct: 236 PTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTF 295

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           DA AGIAL+ +FVKL+SWYDNE+GYS+RV+DL+ HMA 
Sbjct: 296 DAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMAS 333

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* Length = 359

 Score =  663 bits (1713), Expect = 0.0
 Identities = 190/353 (53%), Positives = 248/353 (70%), Gaps = 18/353 (5%)

Query: 7   IKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH- 61
           IK+GINGFGRIGR+V +   +      ++++VAV D     +Y  Y  +YD+VHG++K+ 
Sbjct: 3   IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62

Query: 62  ------NELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA 115
                 +    KD+  ++ G + + V   RNP ++PW K G EYV+ESTG+FT K  A  
Sbjct: 63  VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122

Query: 116 HLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKV-IHDK 172
           HL+GGA+KVVISAP+   A   V+GVN  EY P E  +VSNASCTTNCLAP+  V + + 
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182

Query: 173 FGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGK 232
           FG+  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS+TGAAKAVG V+P+  GK
Sbjct: 183 FGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGK 242

Query: 233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV 292
           LTGMSFRVPT DVSVVDLT    ++ + +EI  A+K  S+  +KGILGYT+E++VS DF+
Sbjct: 243 LTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFI 302

Query: 293 GDSRSSIFDAKAGIAL----SKNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQA 341
            D+RSSI+D+KA +       + F K+VSWYDNEWGYS RV+DL+ HMA    
Sbjct: 303 NDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASKDR 355

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* Length = 334

 Score =  596 bits (1539), Expect = 0.0
 Identities = 177/334 (52%), Positives = 234/334 (70%), Gaps = 6/334 (1%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+    E+ V
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDA-EVSV 59

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            +   L+   K + V   R+PE + W + G + VVESTG FT ++ AA HL+ GAKKV+I
Sbjct: 60  -NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118

Query: 127 SAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           SAP+K+     V+GVN+ +Y P+   ++SNASCTTNCLAP AKV+H++FGIV G+MTTVH
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVH 178

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ +IIP++TGAAKAV  VLP L GKL GM+ RVPT +
Sbjct: 179 SYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPN 237

Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
           VSVVDL   LEKE T EE+  A+K  +EG+LKGIL Y+EE +VS D+ G + SS  DA +
Sbjct: 238 VSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALS 297

Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
            + +    VK+VSWYDNE GYS RV+DL  ++A 
Sbjct: 298 TMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* Length = 337

 Score =  571 bits (1475), Expect = 0.0
 Identities = 155/336 (46%), Positives = 211/336 (62%), Gaps = 6/336 (1%)

Query: 6   KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           K+K+ INGFGRIGR   R    R    +++V +ND        +++ KYDS+ G +   +
Sbjct: 1   KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDA-D 58

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           +K   +  +    K + V   RNP  +PW   G + V+E TGVF D+D A  HL+ GAKK
Sbjct: 59  VKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKK 118

Query: 124 VVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V+I+AP K   P +VVGVNE+ Y     I+SNASCTTNCLAP  KV+  KFGI++G MTT
Sbjct: 119 VLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTT 178

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
            HS T  Q+ +D    +D R  RAA  NI+P+STGAAKAV  VLP L GKL G++ RVPT
Sbjct: 179 THSYTGDQRLLDAS-HRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPT 237

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VSVVDL V++ K+   EE+  A +E ++ +LKGIL   +E +VS DF     SS  D+
Sbjct: 238 PNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDS 297

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
              + +  + VK+++WYDNEWGYS RV+DL   +A 
Sbjct: 298 SLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 333

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* Length = 338

 Score =  569 bits (1470), Expect = 0.0
 Identities = 149/338 (44%), Positives = 214/338 (63%), Gaps = 13/338 (3%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+ INGFGRIGRL  R   + + +E+VAVND     D + ++ KYD++ G++   E++V
Sbjct: 5   VKVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTG-EVEV 62

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D        K V  F   +  ++PW     + V+E TG +TDKDKA AH++ GAKKV+I
Sbjct: 63  VDG-GFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121

Query: 127 SAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
           SAP+  D    V   N +E      +VS ASCTTN LAP+AKV++D FG+VEGLMTT+H+
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHA 181

Query: 186 ITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
            T  Q T D P  K D R  RAA+ NIIP+STGAAKA+GKV+P ++GKL G + RVP   
Sbjct: 182 YTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVAT 241

Query: 245 VSVVDLTVRLEKE-ATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
            S+ +LTV LEK+  T E++  A+K  S        GYTE+++VS+D VG +  S+FDA 
Sbjct: 242 GSLTELTVVLEKQDVTVEQVNEAMKNASN----ESFGYTEDEIVSSDVVGMTYGSLFDAT 297

Query: 304 AGIALS---KNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
               +S   +  VK+ +WYDNE  Y+++++  + ++A+
Sbjct: 298 QTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 335

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} Length = 345

 Score =  567 bits (1465), Expect = 0.0
 Identities = 154/335 (45%), Positives = 224/335 (66%), Gaps = 6/335 (1%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             ++ INGFGRIGR+V R A++    E+VA+N  +  ++ + ++ KYD+VHG++    ++
Sbjct: 4   MTRVAINGFGRIGRMVFRQAIKESAFEIVAINASY-PSETLAHLIKYDTVHGKFDG-TVE 61

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
              E  LL   K + +   R+P+E+PW   G E V+E+TG F  K+KA  H++ GAKKV+
Sbjct: 62  A-FEDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVI 120

Query: 126 ISAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           ++AP K+     VVGVNE +       ++SNASCTTNCLAP+ KV+ ++FGI  GLMTTV
Sbjct: 121 LTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQFGIENGLMTTV 180

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           H+ T  QK +D P  KD R  RA   +IIP++TGAAKA+ KVLP LNGKL GM+ RVPT 
Sbjct: 181 HAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP 239

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
           +VS+VDL V ++++ T E I +A K  + G LKGI+ ++EE +VS DF  ++ S+I D  
Sbjct: 240 NVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGL 299

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           + + +    VK+++WYDNEWGYS RV+DL+  +  
Sbjct: 300 STMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVD 334

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* Length = 331

 Score =  562 bits (1450), Expect = 0.0
 Identities = 165/334 (49%), Positives = 222/334 (66%), Gaps = 8/334 (2%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R  L    VE+  +ND       + ++ KYDS++ ++   E+  
Sbjct: 1   MKVGINGFGRIGRQVFR-ILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPG-EVAY 57

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D++ L    K +     ++P+EIPWA+ G   V+ESTGVFTD DKA AHL+GGAKKV+I
Sbjct: 58  -DDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116

Query: 127 SAPSKDA-PMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           +AP+K      V+GVN + Y P    I+SNASCTTN LAP+ KV+ + FG+ + LMTTVH
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVH 176

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKA   VLP+L G+  GM+ RVPT  
Sbjct: 177 SYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT 235

Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
            S+ D+T  L++E T EE+  A+K  +EG LKGIL YTE+++V  D V D  SSI DAK 
Sbjct: 236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKL 295

Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
             AL  N VK+ +WYDNEWGY++RV DL+  + +
Sbjct: 296 TKALG-NMVKVFAWYDNEWGYANRVADLVELVLR 328

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} Length = 342

 Score =  560 bits (1447), Expect = 0.0
 Identities = 159/343 (46%), Positives = 236/343 (68%), Gaps = 15/343 (4%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
            IK+GINGFGRIGR   R +  R+++E+VA+ND      ++ ++ KYDSVHG +K   ++
Sbjct: 2   AIKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKG-SVE 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            KD+ +++   K + VF  ++P +IPW   G + V+E+TGVF D++ A+ HL+GGAKKV+
Sbjct: 60  AKDD-SIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118

Query: 126 ISAPSKDA-PMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
           I+AP+K+     V+GVNE++Y P E +I+SNASCTTNCLAP  KV+++ FG+ +G M TV
Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTV 178

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
           H+ T  Q+ +D P  KD+R  RAA+ NI+P++TGAAKA+G+V+P L GKL G + RVP  
Sbjct: 179 HAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVP 237

Query: 244 DVSVVDLTVRLEKE-ATYEEIKNAIKEESEGK-------LKGILGYTEEDVVSTDFVGDS 295
           D S++DLTV + K  ++ EE+    +E ++         LK IL Y E+ +VSTD VG+ 
Sbjct: 238 DGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNP 297

Query: 296 RSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
            S+IFDA     +  N V + +WYDNEWGYS R+ DL++++A+
Sbjct: 298 HSAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLAE 339

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} Length = 356

 Score =  560 bits (1446), Expect = 0.0
 Identities = 160/341 (46%), Positives = 226/341 (66%), Gaps = 13/341 (3%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
            +K+ INGFGRIGR V ++A +R  +++VA+ND       + ++ KYDS  G +   +++
Sbjct: 21  SMKLAINGFGRIGRNVFKIAFERG-IDIVAIND-LTDPKTLAHLLKYDSTFGVYNK-KVE 77

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAA----HLK-GG 120
              +  ++   + + +   R+P+ +PWAK G + V+ESTGVF+           H+   G
Sbjct: 78  S-RDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG 136

Query: 121 AKKVVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
           AKKV+++ P+KD     V+GVN+ +   +L  VSNASCTTNCLAPLAKV+H+ FGI +GL
Sbjct: 137 AKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGL 196

Query: 180 MTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR 239
           MTTVH+ T  Q+ +D P   D R  RAA+ +IIP+STGAAKAVG VLP L GKL G S R
Sbjct: 197 MTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMR 255

Query: 240 VPTVDVSVVDLTVRLEK-EATYEEIKNAIKEESEG-KLKGILGYTEEDVVSTDFVGDSRS 297
           VP    S+VDLTV+L+K + T EEI + +++ SE  +LKGILGYTE+ +VS+D  G+S S
Sbjct: 256 VPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHS 315

Query: 298 SIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           SI D    + L   F K++SWYDNE+GYS+RV+DL   + K
Sbjct: 316 SIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 356

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A Length = 380

 Score =  561 bits (1447), Expect = 0.0
 Identities = 150/338 (44%), Positives = 221/338 (65%), Gaps = 9/338 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
            I++ INGFGRIGR   R    R   D+E+VA+N+         ++ +YDSV G++   +
Sbjct: 2   TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           +   DE ++    K + +   RNP  +PW +   + V+ESTGVF   + A+ H++ GAKK
Sbjct: 60  ISY-DENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118

Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+I+AP K      +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D    +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G++ RV
Sbjct: 179 TTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV 237

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT +VSVVDL V++EK    E++   +++ S+  +KGI+ Y++  +VS+DF G   SSI 
Sbjct: 238 PTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIV 297

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           D+   + +  + VK+++WYDNEWGYS RV+DL    A+
Sbjct: 298 DSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAAR 335

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* Length = 339

 Score =  555 bits (1433), Expect = 0.0
 Identities = 150/338 (44%), Positives = 221/338 (65%), Gaps = 9/338 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
            I++ INGFGRIGR   R    R   D+E+VA+N+         ++ +YDSV G++   +
Sbjct: 2   TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTS-DARTAAHLLEYDSVLGRFNA-D 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           +   DE ++    K + +   RNP  +PW +   + V+ESTGVF   + A+ H++ GAKK
Sbjct: 60  ISY-DENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKK 118

Query: 124 VVISAPSK--DAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           V+I+AP K      +V+GVN+ EY+ E   ++SNASCTTNCLAP+AKV+HD FGI++G M
Sbjct: 119 VLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNFGIIKGTM 178

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT HS T  Q+ +D    +D R  RAA+ NI+P++TGAAKAV  V+P L GKL G++ RV
Sbjct: 179 TTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV 237

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT +VSVVDL V++EK    E++   +++ S+  +KGI+ Y++  +VS+DF G   SSI 
Sbjct: 238 PTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIV 297

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           D+   + +  + VK+++WYDNEWGYS RV+DL    A+
Sbjct: 298 DSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAAR 335

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 Length = 332

 Score =  546 bits (1409), Expect = 0.0
 Identities = 165/334 (49%), Positives = 232/334 (69%), Gaps = 7/334 (2%)

Query: 8   KIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           ++ INGFGRIGRLV R+  +R   D+E+VA+ND    T  + ++ KYDSVH ++   +++
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG-KVE 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
              E +L+   K + VF   +P ++PW   G ++V+ESTGVF +++KA  HL+ GAKKV+
Sbjct: 60  Y-TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVI 118

Query: 126 ISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
           I+AP+K      V+G NE + KPE  I+S ASCTTN +AP+ KV+H+KFGIV G++TTVH
Sbjct: 119 ITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVH 178

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD 244
           S T  Q+ +D P  KD R  RAA+ NIIP++TGAAKAV  V+P + GKL GM+ RVPT D
Sbjct: 179 SYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPD 237

Query: 245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA 304
            S+ DLTV +EKE T EE+   +KE +EG+LKGI+GY +E +VS+D +G + S IFDA  
Sbjct: 238 GSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATI 297

Query: 305 GIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
              +    VK+ SWYDNE+GYS+RV+D +  + K
Sbjct: 298 TNVIGGKLVKVASWYDNEYGYSNRVVDTLELLLK 331

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* Length = 335

 Score =  521 bits (1344), Expect = 0.0
 Identities = 161/337 (47%), Positives = 226/337 (67%), Gaps = 7/337 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
            +++ INGFGRIGR + R  ++  R D+++VA+ND     +   ++ +YDSVHG++   E
Sbjct: 2   AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLG-PVETNAHLLRYDSVHGRFPK-E 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           ++V    T+  G  P+ V   RNP E+PW +   +  +E TG+FT +DKAA HL+ GAK+
Sbjct: 60  VEV-AGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKR 118

Query: 124 VVISAPSKDA-PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           V++SAP+  A    V GVN  +   +  ++SNASCTTNCLAP+A+V++D  GI +G MTT
Sbjct: 119 VIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTIGIEKGFMTT 178

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           +HS T  Q T+D    KD    RAA+ ++IP+STGAAKAVG VLP L GKL G++ RVPT
Sbjct: 179 IHSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPT 237

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDA 302
            +VSVVDLT   ++E T EE+ NAI+E + G+LKGILGYT+E +VS DF  DS SS+F  
Sbjct: 238 PNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHT 297

Query: 303 KAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAKT 339
                +    V+++SWYDNEWG+SSR+ D  V + K 
Sbjct: 298 DQTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALGKL 334

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* Length = 339

 Score =  501 bits (1292), Expect = e-180
 Identities = 117/338 (34%), Positives = 192/338 (56%), Gaps = 9/338 (2%)

Query: 6   KIKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
            +++ INGFGRIGR V R   +     ++ +VA+N+       M ++ KYD+ HG++   
Sbjct: 2   TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELA-DAAGMAHLLKYDTSHGRFAW- 59

Query: 63  ELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK 122
           E++  +   L  G+  + V   R+ + +PW + G + V++ TGV+  ++   AH+  GAK
Sbjct: 60  EVRQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAK 118

Query: 123 KVVISAPSKDA--PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLM 180
           KV+ S P  +      V GVN+ + + E  IVSNASCTTNC+ P+ K++ D +GI  G +
Sbjct: 119 KVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTV 178

Query: 181 TTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV 240
           TT+HS    Q+ +D     D R  RAAS +IIP  T  A  + +  P  N +   ++ RV
Sbjct: 179 TTIHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV 237

Query: 241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIF 300
           PT++V+ +DL+V ++K     E+   +++ ++G   GI+ YTE  +VS DF  D  S+I 
Sbjct: 238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIV 297

Query: 301 DAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           D         + +K + W DNEWG+++R++D  + MA 
Sbjct: 298 DGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* Length = 335

 Score =  494 bits (1275), Expect = e-177
 Identities = 148/337 (43%), Positives = 207/337 (61%), Gaps = 10/337 (2%)

Query: 7   IKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           I++ ING+GRIGR + R   +     D+E+VA+ND         ++ +YD+ HG++    
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLG-DPKTNAHLTRYDTAHGKFPG-T 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           + V +   ++     + V   RNP ++PW     + V+E TG FT K+KA AH+KGGAKK
Sbjct: 60  VSV-NGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118

Query: 124 VVISAPSKDA--PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
           V+ISAP         V GVN    K    ++SNASCTTNCLAPL K ++DK G+ +GLMT
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKLGLQDGLMT 178

Query: 182 TVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP 241
           TVH+ T  Q   D    +D R  R+A+ ++IP+ TGAA AVG VLP L+GKL G + RVP
Sbjct: 179 TVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVP 237

Query: 242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFD 301
           T++VS+VDL+   ++  T EE+   +K  SEG+LKGIL Y  E +VS D+  D  SS  D
Sbjct: 238 TINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVD 297

Query: 302 AKAGIALSKNFVKLVSWYDNEWGYSSRVIDLIVHMAK 338
           A     +S   VK+ SWYDNEWG+S+R++D  V +  
Sbjct: 298 ASL-TKVSGRLVKVSSWYDNEWGFSNRMLDTTVALMS 333

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 Length = 337

 Score =  391 bits (1006), Expect = e-137
 Identities = 64/348 (18%), Positives = 126/348 (36%), Gaps = 42/348 (12%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             + ING+G +G+ VA    Q+DD++++ V+      +    + K   ++          
Sbjct: 2   KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAI------- 54

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             E+  LF +  + V G  +          A+ V++ T           + + G K +  
Sbjct: 55  -PERVKLFEKAGIEVAGTVDD-----MLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108

Query: 127 SAPSKDAP--MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVH 184
                +     F    N +E   + D     SC T  L    K +HD FGI +     V 
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGK-DYTRVVSCNTTGLCRTLKPLHDSFGIKKVRAVIVR 167

Query: 185 SITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVG-KVLPALNGKLTGMSFRVPTV 243
                 +   GP              IIP+        G  V   L+  +  M+  VPT 
Sbjct: 168 RGADPAQVSKGPIN-----------AIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTT 216

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK 303
            +   ++ V +E+  T ++I +  ++      + IL   E+ + ST  + +    +  ++
Sbjct: 217 LMHQHNVMVEVEETPTVDDIIDVFEDTP----RVILISAEDGLTSTAEIMEYAKELGRSR 272

Query: 304 AGIALSKNFVKLVSWYDNEWGYSSRV----------IDLIVHMAKTQA 341
             +     + + ++  DNE  Y   V          +D +  + + + 
Sbjct: 273 NDLFEIPVWRESITVVDNEIYYMQAVHQESDIVPENVDAVRAILEMEE 320

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Length = 343

 Score =  337 bits (865), Expect = e-115
 Identities = 71/350 (20%), Positives = 119/350 (34%), Gaps = 38/350 (10%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
             K+ ING+G IG+ VA     +DD+E++ V       D+   +    +V   +K     
Sbjct: 2   PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTK--TKPDFEARL----AVEKGYKLFVAI 55

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             +E+  LF +      G      I      A+ VV+       K       K    K +
Sbjct: 56  PDNERVKLFEDA-----GIPVEGTILDIIEDADIVVDGAPKKIGKQNLENIYKPHKVKAI 110

Query: 126 ISAPSKDA---PMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTT 182
           +    K       F    +      + D V   SC T  L  +   I+    I +  +  
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGK-DYVRVVSCNTTGLCRILYAINSIADIKKARIVL 169

Query: 183 VHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT 242
           V           GP         A + N +   +     V  V+P   GK+   +  VPT
Sbjct: 170 VRRAADPNDDKTGPV-------NAITPNPVTVPSHHGPDVVSVVPEFEGKILTSAVIVPT 222

Query: 243 VDVSVVDLTVRLEKEATYEEIKNAIKEESE----GKLKGILGYTEEDVVSTDFVGDSRSS 298
             + +  L V ++ + + ++I  AIK+           G     +      D  G  R  
Sbjct: 223 TLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIEYGRDL-GRLRYD 281

Query: 299 IFD---AKAGIALSKNFVKLVSWYDNEWGYSSRV----IDLIVHMAKTQA 341
           I +    +  I + +N + L+     E    S V    ID I  M + + 
Sbjct: 282 INELVVWEESINVLENEIFLMQAVHQE----SIVIPENIDCIRAMLQMEE 327

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 Length = 334

 Score =  325 bits (836), Expect = e-111
 Identities = 70/348 (20%), Positives = 121/348 (34%), Gaps = 45/348 (12%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NG+G IG+ VA    ++DD+EL+ +       D+  Y  K   +       E  
Sbjct: 2   KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            + EK            GF     +       + +V++T           + K G K + 
Sbjct: 60  PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108

Query: 126 ISAPSKDAP--MFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
                 D     FV   N +    + + V   SC T  L      I +    V  +M   
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGK-NYVRVVSCNTTGLVRTLSAIREYADYVYAVMIRR 167

Query: 184 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 243
            +     K          RG   A    +   +     V  V+P     +  M+F VPT 
Sbjct: 168 AADPNDTK----------RGPINAIKPTVEVPSHHGPDVQTVIP---INIETMAFVVPTT 214

Query: 244 DVSVVDLTVRLEKEATYEEIKNAIKEESEG----KLKGILGYTEEDVVSTDFVGDSRSSI 299
            + V  + V L+K  T +++ +  +  +      K KG     +    + D      +++
Sbjct: 215 LMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIEFARDL-HREWNNL 273

Query: 300 FD---AKAGIALSKNFVKLVSWYDNEWGYSSRV----IDLIVHMAKTQ 340
           ++    K  I +  N +  +     E    S V    ID I  M +  
Sbjct: 274 YEIAVWKESINIKGNRLFYIQAVHQE----SDVIPENIDAIRAMFELA 317

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 Length = 340

 Score =  226 bits (576), Expect = 6e-72
 Identities = 55/345 (15%), Positives = 110/345 (31%), Gaps = 38/345 (11%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           + + +NG+G IG+ VA   +++ D++LV V     S +Y  ++     +        + V
Sbjct: 2   VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAK--TSPNYEAFIAHRRGIR-------IYV 52

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             +    F E  + V G      +      ++ VV++T           +L+     +  
Sbjct: 53  PQQSIKKFEESGIPVAG-----TVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107

Query: 127 SAPSKDAPMFVVGVNEKEYKPE-LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHS 185
                +             +      +   SC T  L      ++    + +   T V  
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVSKVEKVRATIVRR 167

Query: 186 ITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV 245
               ++   GP               +PS    AK V  V+   N  +  M+   PT  +
Sbjct: 168 AADQKEVKKGPI-----NSLVPDPATVPSHH--AKDVNSVIR--NLDIATMAVIAPTTLM 218

Query: 246 SVVDLTVRLEKEATYEEIKNAIKEESE----GKLKGILGYTEEDVVSTD--FVGDSRSSI 299
            +  + + L+ +   ++I + ++                  E   V+ D     +    +
Sbjct: 219 HMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPEV 278

Query: 300 FDAKAGIALSKNFVKLVSWYDNEWGYSSRV----IDLIVHMAKTQ 340
                 I +  + V L+     E    S V    ID I    K  
Sbjct: 279 MIFSDSIYVKDDEVMLMYAVHQE----SIVVPENIDAIRASMKLM 319

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Length = 304

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVND 38
          M  DKKI+  I G+G IGR   +   +  D E+  +  
Sbjct: 4  MTDDKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVR 41

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Length = 320

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 5  KKIKIGINGFGRIGRLVARVALQRDDVELVAV 36
            I++ I G+G +GR V ++  ++ D++LV +
Sbjct: 2  TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGI 33

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} Length = 350

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 60/240 (25%)

Query: 75  GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFT-----------DKDKAAAHLKGGAKK 123
           G+K      +    +IP  +   +  + ST                 + A +      K 
Sbjct: 43  GKKYKDAVKWIEQGDIP--EEVQDLPIVSTNYEDHKDVDVVLSALPNELAESIELELVKN 100

Query: 124 --VVISAPS-----KDAPMFVVGVN----------EKEYKPELDIVSNASCTTNCLAPLA 166
             +V+S  S      D P+    +N          ++    +  +V N +CT   ++   
Sbjct: 101 GKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPI 160

Query: 167 KVIHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASFNIIP--------SSTG 217
           K + +     + ++TT+ +++ A    +   ++           NIIP         +  
Sbjct: 161 KPLIEIATKSKIIITTLQAVSGAGYNGISFMAI---------EGNIIPYIKGEEDKIAKE 211

Query: 218 AAKAVG-----KVLPALNGKLTGMSFRVPTVD---VSVVDLTVRLEKEATYEEIKNAIKE 269
             K  G     +++PA N   T  S RVPT       +    +   +    EEIK  +K 
Sbjct: 212 LTKLNGKLENNQIIPA-NLDSTVTSIRVPTRVGHMGVI---NIVTNERINIEEIKKTLKN 267

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Length = 315

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
           A +  +++ + G GR G+   R         LV +    
Sbjct: 5  PANNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSN 44

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Length = 346

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 1  MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
          +   K ++  I G GR+G      +  +   V+LVA     
Sbjct: 3  VTTRKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD 43

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Length = 294

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
          +    K  + + G GR G +  R          + +   
Sbjct: 2  ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 26/148 (17%)

Query: 4   DKKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQ 58
           D  I++ I G  GR+GR + + AL  + V+L A         + +D              
Sbjct: 3   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGA------- 55

Query: 59  WKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKA 113
                + V+     +  +  V    F  PE          + G   V+ +TG F +  K 
Sbjct: 56  -GKTGVTVQSSLDAVKDDFDV-FIDFTRPEGTLNHLAFCRQHGKGMVIGTTG-FDEAGKQ 112

Query: 114 AAHLKGGAKKVVISAPSKDAPMFVVGVN 141
           A  ++  A  + I      A  F VGVN
Sbjct: 113 A--IRDAAADIAIVF----AANFSVGVN 134

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Length = 308

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 5  KKIKIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39
          K IK+G+ G G I +     +  + +  E V    P
Sbjct: 5  KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP 40

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Length = 344

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 5  KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPF 40
            ++I + G GRIG + A       D+ELV + DPF
Sbjct: 3  LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPF 38

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} Length = 354

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 43/198 (21%)

Query: 124 VVISAPS-----KDAPMFVVGVN----------EKEYKPELDIVSNASCTTNCLAPLAKV 168
           ++ S  S     +D P+ +  VN           ++   +  I++N +C+T C     K 
Sbjct: 109 LIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKP 168

Query: 169 IHDKFGIVEGLMTTVHSIT-ATQKTVDGPSMKDWRGGRAASFNIIP--------SSTGAA 219
           I DKFG+    + T+ +++ A    V   ++           N+IP          T + 
Sbjct: 169 IMDKFGLEAVFIATMQAVSGAGYNGVPSMAI---------LDNLIPFIKNEEEKMQTESL 219

Query: 220 KAVGKVLPAL----NGKLTGMSFRVPTVD---VSVVDLTVRLEKEATYEEIKNAIKEESE 272
           K +G +        N K++    RV  +D    S+    V+ ++ A  EEIK  + +   
Sbjct: 220 KLLGTLKDGKVELANFKISASCNRVAVIDGHTESI---FVKTKEGAEPEEIKEVMDKFDP 276

Query: 273 GKLKGILGYTEEDVVSTD 290
            K   +  Y +  V+  +
Sbjct: 277 LKDLNLPTYAKPIVIREE 294

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Length = 319

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 5  KKIKIGINGFGRIGRLV-ARVALQRDDVELVAVNDP 39
          KK++IG+ G G I +     V     D  L     P
Sbjct: 4  KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP 39

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 26/147 (17%)

Query: 5   KKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQW 59
             +++ + G  GR+GR +     +R DVEL AV       F+  D    +          
Sbjct: 20  GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGS-------- 71

Query: 60  KHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKAA 114
               +++ D+    F      +  F  P+         A+    +++ +TG F+  ++A 
Sbjct: 72  DFLGVRITDDPESAFSNTEG-ILDFSQPQASVLYANYAAQKSLIHIIGTTG-FSKTEEAQ 129

Query: 115 AHLKGGAKKVVISAPSKDAPMFVVGVN 141
             +   AK   I      +    +GVN
Sbjct: 130 --IADFAKYTTIVK----SGNMSLGVN 150

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Length = 357

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 1  MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
                +K GI G G IG   + R+A     VE+VAV D  
Sbjct: 18 YFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV 58

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Length = 444

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 4  DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
           KK++I     G  G+       +RDDVE+VA  DP
Sbjct: 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP 53

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Length = 344

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 6  KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPF 40
           ++IG+ G G IG+  + R+  +    E+VAV D  
Sbjct: 2  SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN 37

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Length = 354

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 5  KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
            + +   G GR   ++A    + + ++LV     
Sbjct: 4  NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR 38

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} Length = 243

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 30/140 (21%)

Query: 5   KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
             +KI + G+G + + VAR+A +    E+V V +                          
Sbjct: 2   ASMKILLIGYGAMNQRVARLA-EEKGHEIVGVIENT-------------------PKATT 41

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPE---EIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA 121
             +  + +   +       F NP     +         VV +TG   +K      L   +
Sbjct: 42  PYQQYQHIADVKGADVAIDFSNPNLLFPLLDEDFHLPLVVATTG-EKEKLLNK--LDELS 98

Query: 122 KKVVISAPSKDAPMFVVGVN 141
           + + +      +     GV+
Sbjct: 99  QNMPVFF----SANMSYGVH 114

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 6  KIKIGINGFGRIGRLVARVALQR-DDVELVAVNDP 39
          KI+ GI G G  G ++   A++   D ++VA  DP
Sbjct: 2  KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDP 36

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} Length = 236

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 8  KIGINGFGRIGRLVARVALQRDDVELVAVND 38
           +G+ G+G IG+ +A   L+R+  E+ A+ D
Sbjct: 2  LVGLIGYGAIGKFLAE-WLERNGFEIAAILD 31

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272

 Score = 39.5 bits (93), Expect = 9e-04
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 27/147 (18%)

Query: 5   KKIKIGING-FGRIGRLVARVALQRDDVELVAV----NDPFISTDYMTYMFKYDSVHGQW 59
             +KI I G  GR+GR++    L   D  LV        P +  D   ++          
Sbjct: 6   SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFL---------G 56

Query: 60  KHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPW-----AKTGAEYVVESTGVFTDKDKAA 114
           K   + + D+   +   +   +  F  PE          +   + V+ +TG F++  KA 
Sbjct: 57  KQTGVALTDDIERVC-AEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTG-FSEPQKAQ 114

Query: 115 AHLKGGAKKVVISAPSKDAPMFVVGVN 141
             L+   +K+ +      +    VGVN
Sbjct: 115 --LRAAGEKIALVF----SANMSVGVN 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	100.0
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	100.0
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	100.0
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	100.0
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	100.0
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	100.0
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	100.0
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	100.0
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	100.0
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	100.0
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	100.0
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	100.0
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	100.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	100.0
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	100.0
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	100.0
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	100.0
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	100.0
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	100.0
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	100.0
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	100.0
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	100.0
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	100.0
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	100.0
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	100.0
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	100.0
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	100.0
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	100.0
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	100.0
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	100.0
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	100.0
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	100.0
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	100.0
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	100.0
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	100.0
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	100.0
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	100.0
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	100.0
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	100.0
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	100.0
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	100.0
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	100.0
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	100.0
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	100.0
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	99.24
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	98.68
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.65
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	98.59
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.58
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.43
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.39
4had_A	350	Probable oxidoreductase protein; structural genomi	98.38
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.35
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.31
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.3
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.3
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.29
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.29
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.28
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.27
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.26
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.26
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.24
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.24
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.24
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.23
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.22
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.22
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.22
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.21
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.21
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.19
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.18
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.18
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.18
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.17
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.16
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.14
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.13
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.12
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	98.1
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.08
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.07
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.07
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.05
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	98.04
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	98.03
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.97
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.95
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.94
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.93
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.88
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.87
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.87
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.86
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.84
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.84
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.84
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.81
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.8
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.79
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.77
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.75
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	97.68
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.61
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.57
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.48
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.43
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.42
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.41
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	97.34
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.32
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.32
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	97.1
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	97.03
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.99
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.9
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.82
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.81
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.65
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.65
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.56
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.46
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.43
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.43
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.3
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.25
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.23
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.17
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	96.15
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.12
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.04
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.98
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	95.95
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.95
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.95
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.83
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.78
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	95.65
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.6
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.58
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	95.54
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.5
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.38
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.32
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.23
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.19
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	95.14
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	95.12
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.11
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	95.09
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.08
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.07
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.92
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	94.89
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.81
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.78
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.73
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.7
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.68
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.55
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	94.49
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.33
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	94.27
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.21
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.08
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.07
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.07
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.05
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.04
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	94.02
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	93.96
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	93.95
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	93.91
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.83
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	93.81
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	93.81
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.78
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	93.77
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.72
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.71
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	93.66
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	93.65
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.56
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	93.54
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	93.37
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.25
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.19
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	93.03
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.02
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.96
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	92.88
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	92.87
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	92.74
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.73
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	92.71
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.66
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	92.42
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.37
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.33
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	92.22
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	92.1
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	92.04
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.0
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	91.99
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	91.93
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	91.89
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	91.87
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	91.71
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.44
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	91.43
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	91.4
2csu_A	457	457AA long hypothetical protein; structural genomi	91.37
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	91.35
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	91.32
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.32
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	91.3
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.2
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	91.17
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	91.13
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	91.11
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.06
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	91.05
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	91.01
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.97
4f6c_A	427	AUSA reductase domain protein; thioester reductase	90.96
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	90.81
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.53
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.5
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	90.46
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.42
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.27
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	90.26
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	90.18
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.13
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.13
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	90.01
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	89.99
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	89.86
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	89.65
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	89.63
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	89.61
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	89.55
3qha_A	296	Putative oxidoreductase; seattle structural genomi	89.48
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.44
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	89.44
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	89.37
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	89.36
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	89.29
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	88.87
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.75
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	88.73
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	88.6
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	88.58
4ezb_A	317	Uncharacterized conserved protein; structural geno	88.45
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	88.29
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	88.28
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	88.12
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	88.1
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	88.09
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	88.02
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	87.87
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	87.72
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	87.52
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	87.48
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	87.43
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	87.4
1xq6_A	253	Unknown protein; structural genomics, protein stru	87.18
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	87.16
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	87.08
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	86.99
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	86.92
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	86.83
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	86.76
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	86.74
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	86.61
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	86.6
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	86.44
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	86.19
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	86.18
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	86.16
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	86.15
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	86.1
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	86.02
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	85.85
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	85.81
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	85.8
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	85.76
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	85.72
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	85.55
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	85.5
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	85.43
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	85.42
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	85.42
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	85.41
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	85.38
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	85.37
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	85.37
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	85.27
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	85.21
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	85.19
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	85.18
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	85.08
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	85.04
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	85.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	84.95
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	84.93
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	84.77
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	84.75
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	84.74
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	84.56
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	84.51
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	84.5
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	84.48
3tl2_A	315	Malate dehydrogenase; center for structural genomi	84.34
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	84.33
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	84.29
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	84.29
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	84.24
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	84.2
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	84.17
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	84.12
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	84.07
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	83.96
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	83.91
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	83.85
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	83.64
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	83.63
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	83.6
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	83.57
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	83.45
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	83.45
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	83.18
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	83.18
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	83.15
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	82.93
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	82.9
3c85_A	183	Putative glutathione-regulated potassium-efflux S	82.87
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	82.66
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	82.66
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	82.34
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	82.32
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	82.31
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	82.25
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	82.03
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	81.97
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	81.57
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	81.46
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	81.38
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	81.34
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	81.34
4f6l_B	508	AUSA reductase domain protein; thioester reductase	81.24
4g65_A	461	TRK system potassium uptake protein TRKA; structur	81.19
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	81.04
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	80.82
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	80.36
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	80.26
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	80.24
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	80.17
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	80.12
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	80.01

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=100.00  E-value=1.9e-108  Score=774.69  Aligned_cols=331  Identities=68%  Similarity=1.103  Sum_probs=323.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||||||||||.++|++++++++|+|+|||++.+.++++|||+|||+||+|+ ++|+.+++ +|.+||+.+++++++
T Consensus         1 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~e~   78 (332)
T 3pym_A            1 MVRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYA-GEVSHDDK-HIIVDGKKIATYQER   78 (332)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCC-CcEEEcCC-EEEECCEEEEEEeec
Confidence            3799999999999999999999999999999998889999999999999999999 99999887 999999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecch
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPL  165 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lapl  165 (341)
                      +|++++|++.++|+||||||.|+++++++.|+++|+|+|+||+|++|.|++|||+|+++|+++.+||||||||||||+|+
T Consensus        79 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~~IISnasCTTn~Lap~  158 (332)
T 3pym_A           79 DPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPL  158 (332)
T ss_dssp             SGGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHHHH
T ss_pred             ccccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCCCCeEeeccchhhcCccccEEecCcchhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987789999999999999999


Q ss_pred             hHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeeeE
Q 019445          166 AKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDV  245 (341)
Q Consensus       166 lk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~g  245 (341)
                      +|+||++|||++++|||+||+|++|+++|++++++||++|++++|+||+++|+++++.+++|||++|++++|+|||+++|
T Consensus       159 lkvL~d~fGI~~g~mTTvha~T~~Q~~vDg~~~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~~~  238 (332)
T 3pym_A          159 AKVINDAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDV  238 (332)
T ss_dssp             HHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCTGGGSCGGGCCEEEECSHHHHHHHHSGGGTTSEEEEEEEESCSSC
T ss_pred             HHHHHHhcCeEEEEEEEEeeccccchhccCCCcccCccccchhhcccCCCCChHHHHHHhhhhhcCCEEEEEEEcCCCCc
Confidence            99999999999999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcch
Q 019445          246 SVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGY  325 (341)
Q Consensus       246 ~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~gy  325 (341)
                      |++++++++++++++|||++++++++++||||||+|+|+|+||+||+|++||||||+.+|++++++|+|+++||||||||
T Consensus       239 s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~~~~~~~~~vk~~~WYDNE~gy  318 (332)
T 3pym_A          239 SVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGY  318 (332)
T ss_dssp             EEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEEETTEEEEEEEECTTHHH
T ss_pred             EeeEEEEEECCcCCHHHHHHHHHHhccCccCceeEEEcCCeEeeccCCCCcceEEccccccccCCCEEEEEEEECCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhh
Q 019445          326 SSRVIDLIVHMAK  338 (341)
Q Consensus       326 ~~r~~d~~~~~~~  338 (341)
                      ||||+||+.||++
T Consensus       319 s~r~~dl~~~~~~  331 (332)
T 3pym_A          319 STRVVDLVEHVAK  331 (332)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999975

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=100.00  E-value=2.5e-108  Score=775.23  Aligned_cols=335  Identities=87%  Similarity=1.327  Sum_probs=325.4

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCc-eeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN-ELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~-~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .++||||||||||||.++|++++++++|+|+|||++.+.++++|||+|||+||+|+ + +|+.+++++|.+||+.+++++
T Consensus         2 ~~~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~-~~~v~~~~~~~l~i~Gk~I~v~~   80 (337)
T 3v1y_O            2 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWK-HSDIKIKDSKTLLLGEKPVTVFG   80 (337)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCC-SSCEEEEETTEEEETTEEEEEEC
T ss_pred             CceEEEEECCChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCccc-CceEEEcCCcEEEECCEEEEEEE
Confidence            35899999999999999999999999999999999889999999999999999999 8 998876547999999999999


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceec
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~La  163 (341)
                      +++|++++|++.++|+||||||.|+++++++.|+++|+|+|+||+|++|+|++|||+|+++|+++.+||||||||||||+
T Consensus        81 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~p~vV~gVN~~~~~~~~~IISnasCTTn~La  160 (337)
T 3v1y_O           81 IRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLA  160 (337)
T ss_dssp             CSSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHH
T ss_pred             ecCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeECCCCCHHHcCCCCcEEecCchhhhhHH
Confidence            99999999998899999999999999999999999999999999999999999999999999877899999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+||++|||++++|||+||+|++|+++|++++++||++|++++|+||+++|+++++.|++|||++|++++|+|||++
T Consensus       161 p~lkvL~d~fGI~~g~mTTvha~T~~q~~~Dg~~~kd~r~~r~~a~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv~  240 (337)
T 3v1y_O          161 PLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV  240 (337)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCTTCGGGGSBGGGCCEEEECCHHHHHHHHSGGGTTSEEEEEEECSCS
T ss_pred             HHHHHHHHhcCeEEEEEeeeeeccchhhhccCCccccccccccccceeecCCCChHHHHHHhccccCCcEEEEEEEcCCC
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCc
Q 019445          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEW  323 (341)
Q Consensus       244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  323 (341)
                      +||++++++++++++++|||++++++++++||+|||+|+|+|+||+||+|++||||||+.+|++++++|+||++||||||
T Consensus       241 ~~s~~dlt~~lek~~t~eei~~~lk~a~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~~~~~~~~~vk~~~WYDNE~  320 (337)
T 3v1y_O          241 DVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEW  320 (337)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTBTTEEEECSCCCGGGGTTCCCSEEEETTTCEEEETTEEEEEEEECTTH
T ss_pred             CcEEEEEEEEECCCCcHHHHHHHHHHhccCccCCeeEEEcCCEEeeccCCCCcceEEecccCeEECCCEEEEEEEECCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHhhcc
Q 019445          324 GYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       324 gy~~r~~d~~~~~~~~~  340 (341)
                      ||||||+||+.||++++
T Consensus       321 gys~r~~dl~~~~~~~~  337 (337)
T 3v1y_O          321 GYSNRVIDLIRHMAKTQ  337 (337)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHHhccC
Confidence            99999999999999864

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=100.00  E-value=5.2e-107  Score=768.70  Aligned_cols=334  Identities=63%  Similarity=1.065  Sum_probs=325.4

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      .|+||||||||||||.++|++.+++ +|+++|||++.+.++++|||+|||+||+|+ ++|+.+++ +|.+||+.+.++++
T Consensus         6 ~~~kvgInGFGRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~e   82 (346)
T 3h9e_O            6 RELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNG-QLVVDNHEISVYQC   82 (346)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECC
T ss_pred             CeeEEEEECCChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCC-CcEEEcCC-EEEECCEEEEEEec
Confidence            3689999999999999999999987 999999998889999999999999999999 99999888 99999999999999


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCC-CCcEEeCCCCccceec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLA  163 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt~La  163 (341)
                      ++|++++|++.++|+||||||.|+++++++.|+++|||+|+||+|++|+|++|||+|+++|++ +.+|||||||||+||+
T Consensus        83 ~dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d~plvV~gVN~~~~~~~~~~IISNasCTTn~La  162 (346)
T 3h9e_O           83 KEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLA  162 (346)
T ss_dssp             SSGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTTCSEEECCCHHHHHHH
T ss_pred             CChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCeeCcccCHHHcCcccCCEEECCcchhhhHH
Confidence            999999999899999999999999999999999999999999999999999999999999986 6899999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+||++|||++++|||+||+|++|+++||+++++||++|++++|+||+++|++++++|++|||++|++++|+|||++
T Consensus       163 p~lkvL~d~fGI~~g~mTTvhA~T~tQ~~~Dg~~~kd~r~~r~aa~NiIP~~tGaakavgkViPeL~gkltg~avRVPv~  242 (346)
T 3h9e_O          163 PLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTP  242 (346)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTSGGGGSBTTTCCEEECCHHHHHHHHHSGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHHhCeeEEEEeeeeeccCccccccCCCCCCccccccceeeeecccCchHHhhheechhhcCcEEEEEEEcccc
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCc
Q 019445          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEW  323 (341)
Q Consensus       244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  323 (341)
                      +||++++++++++++++|||++++++++++||+|||+|+|+|+||+||+|++||||||+.+|++++|+|+|+++||||||
T Consensus       243 ~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~~~~~~~~~vk~~~WYDNE~  322 (346)
T 3h9e_O          243 DVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEY  322 (346)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEEETTEEEEEEEECTTH
T ss_pred             cceeEEEEEEECCcCCHHHHHHHHHHhccCccCCceeEEcCCeEeeccCCCCCceeEcccccEEecCCEEEEEEEECCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHhhccC
Q 019445          324 GYSSRVIDLIVHMAKTQA  341 (341)
Q Consensus       324 gy~~r~~d~~~~~~~~~~  341 (341)
                      ||||||+||+.||+++++
T Consensus       323 gys~r~~dl~~~~~~~~~  340 (346)
T 3h9e_O          323 GYSHRVVDLLRYMFSRDA  340 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHhhhc
Confidence            999999999999998753

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=100.00  E-value=2.6e-107  Score=768.54  Aligned_cols=331  Identities=46%  Similarity=0.815  Sum_probs=310.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||||||||||.++|++++++++|+|+|||+ .+.++++|||+|||+||+|+ ++|+.+++ +|.++|+.+++++++
T Consensus         4 ~~kv~INGfGrIGr~v~Ra~~~~~~~~ivaINd~-~d~~~~a~llkyDS~hG~f~-~~v~~~~~-~l~inGk~I~v~~e~   80 (345)
T 4dib_A            4 MTRVAINGFGRIGRMVFRQAIKESAFEIVAINAS-YPSETLAHLIKYDTVHGKFD-GTVEAFED-HLLVDGKMIRLLNNR   80 (345)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTCSSSEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             cEEEEEECCCcHHHHHHHHHHhCCCceEEEEcCC-CCHHHHHHHhcccCCCCCCC-CcEEEcCC-EEEECCEEEEEeecC
Confidence            5899999999999999999999999999999998 89999999999999999999 99999887 999999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CCCeeeeccCccccCC-CCcEEeCCCCccceec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLA  163 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt~La  163 (341)
                      +|++++|++.++|+||||||.|+++++++.|+++|+|+|+||+|++ |+|++|||+|+++|++ ..+||||||||||||+
T Consensus        81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~~IISNaSCTTn~La  160 (345)
T 4dib_A           81 DPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLA  160 (345)
T ss_dssp             CGGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCSEEECCCHHHHHHH
T ss_pred             ChhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHcCcccCeEEECCchhhhhhH
Confidence            9999999999999999999999999999999999999999999998 4899999999999986 5799999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+||++|||++++|||+||+|++|+++|+++ ++||++|++++|+||+++|+++++++++|||+||++++|+|||++
T Consensus       161 p~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~-kd~r~~r~aa~NIIP~~tGaakav~kVlPeL~gkltg~avRVPv~  239 (345)
T 4dib_A          161 PVVKVLDEQFGIENGLMTTVHAYTNDQKNIDNPH-KDLRRARACGQSIIPTTTGAAKALAKVLPHLNGKLHGMALRVPTP  239 (345)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEECC--------------CCTTSCTTTCCEEECCTHHHHHHHHCGGGTTTEEEEEEECCCS
T ss_pred             HHHHHHHHhcCeEEEEEEeeeeccCCceeccccc-cccccchhhhhceecCCCchHHHHhhhccccCCcEEEEEEEccCc
Confidence            9999999999999999999999999999999987 799999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCc
Q 019445          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEW  323 (341)
Q Consensus       244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  323 (341)
                      +||++++++++++++++|||+++|++++++||+|||+|+|+|+||+||+|++||||||+.+|++++++|+|+++||||||
T Consensus       240 ~~s~~dlt~~lek~~t~eei~~~lk~As~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vk~~~WYDNE~  319 (345)
T 4dib_A          240 NVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEW  319 (345)
T ss_dssp             SEEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEETTTEEEEEEEEETTH
T ss_pred             ccEEEEEEEEECCCCCHHHHHHHHHHhhcCcccceeeeEcCcEeeeecCCCCcchhhhhhccEEECCCEEEEEEEECCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHhhcc
Q 019445          324 GYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       324 gy~~r~~d~~~~~~~~~  340 (341)
                      ||||||+||+.||++++
T Consensus       320 Gys~r~~dl~~~~~~~~  336 (345)
T 4dib_A          320 GYSRRVVDLVTLVVDEL  336 (345)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhc
Confidence            99999999999998764

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=100.00  E-value=1e-106  Score=763.67  Aligned_cols=329  Identities=48%  Similarity=0.822  Sum_probs=320.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      ++||||||||||||.++|+++++  +++|+|+|||+ .+.++++|||+|||+||+|+ ++|+.+++ +|.+||+.+++++
T Consensus         2 ~~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~-~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~   78 (335)
T 3doc_A            2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDL-GPVETNAHLLRYDSVHGRFP-KEVEVAGD-TIDVGYGPIKVHA   78 (335)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCCEECSS-EEESSSSEEEEEC
T ss_pred             CEEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCC-CCHHHHHHHhcccCCCCCCC-CeEEEecC-EEEECCEEEEEEe
Confidence            58999999999999999999987  78999999999 89999999999999999999 99999887 9999999999999


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCcccee
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCL  162 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~L  162 (341)
                      +++|++++|++.++|+||||||.|+++++++.|+++|+|+|+||+|+.| +|++|||+|+++|+++.+||||||||||||
T Consensus        79 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d~~p~vV~gVN~~~~~~~~~IISNasCTTn~L  158 (335)
T 3doc_A           79 VRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCL  158 (335)
T ss_dssp             CSSTTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCTTCSEECCTTTTGGGCCTTCCEEECCCHHHHHH
T ss_pred             ecccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCCCCCCEEecccCHHHhCccCCeEecCchhhhhh
Confidence            9999999999999999999999999999999999999999999999987 799999999999987789999999999999


Q ss_pred             cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeee
Q 019445          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPT  242 (341)
Q Consensus       163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~  242 (341)
                      +|++|+||++|||++++|||+||+|++|+++|+++ ++||++|++++|+||+++|+++++.+++|||++|++++|+|||+
T Consensus       159 ap~lk~L~d~fGI~~g~mTTvha~T~~q~~~D~p~-kd~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVPv  237 (335)
T 3doc_A          159 APVAQVLNDTIGIEKGFMTTIHSYTGDQPTLDTMH-KDLYRARAAALSMIPTSTGAAKAVGLVLPELKGKLDGVAIRVPT  237 (335)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCC-SSTTTTSCTTSSCEEEECCHHHHHHHHSGGGTTCEEEEEEEESC
T ss_pred             HHhHHHHHHHcCEEEEEEEeeeeccchhhhhcCcc-ccccccccCcceEecCCCchHHHHHHhccccCCCEEEEEEEecc
Confidence            99999999999999999999999999999999986 79999999999999999999999999999999999999999999


Q ss_pred             eeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC
Q 019445          243 VDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE  322 (341)
Q Consensus       243 ~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne  322 (341)
                      ++||+.++++++++++++|||++++++++++||||||+|+|+|+||+||+|++||||||+.+|++++++|+|+++|||||
T Consensus       238 ~~~s~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vk~~~WYDNE  317 (335)
T 3doc_A          238 PNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFNHDSHSSVFHTDQTKVMDGTMVRILSWYDNE  317 (335)
T ss_dssp             SSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEETTTEEEEEEEECTT
T ss_pred             ccccceEEEEEECCCCCHHHHHHHHHHhhcCCcCCeeEEEcCCeEeeeeCCCCCccccCchhhEEEcCCEEEEEEEEcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHHHhh
Q 019445          323 WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       323 ~gy~~r~~d~~~~~~~  338 (341)
                      |||||||+||+.||++
T Consensus       318 ~gys~r~~dl~~~~~~  333 (335)
T 3doc_A          318 WGFSSRMSDTAVALGK  333 (335)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHh
Confidence            9999999999999986

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=100.00  E-value=4.6e-107  Score=770.52  Aligned_cols=333  Identities=58%  Similarity=0.977  Sum_probs=322.8

Q ss_pred             ceeEEEEccCHHHHHHHHH----HHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeee--------cCCcceE
Q 019445            6 KIKIGINGFGRIGRLVARV----ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV--------KDEKTLL   73 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~----l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~--------~~~~~l~   73 (341)
                      ++||||||||||||.++|+    +++++++|+|+|||+..+.++++|||+|||+||+|+ ++|+.        +++ +|.
T Consensus         2 ~~kv~INGFGrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~-~~v~~~~~~~~~~~~~-~l~   79 (359)
T 3ids_C            2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK-YEVTTTKSSPSVAKDD-TLV   79 (359)
T ss_dssp             CEEEEEECTTHHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECS-SCEEEECSCTTSSSCC-EEE
T ss_pred             ceEEEEECCChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEe-eEEEecccccccCCCC-EEE
Confidence            5899999999999999999    778889999999997789999999999999999999 99998        665 899


Q ss_pred             ECCEEEEEEe-cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CCCeeeeccCccccCC-CCc
Q 019445           74 FGEKPVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELD  150 (341)
Q Consensus        74 i~g~~i~v~~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~~~~V~Gvn~~~~~~-~~~  150 (341)
                      ++|+.+++++ +++|++++|++.++|+||||||.|+++++++.|+++|+|+|+||+|++ |+|++|||+|+++|++ ..+
T Consensus        80 inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~~  159 (359)
T 3ids_C           80 VNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHH  159 (359)
T ss_dssp             ETTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCBSSCEECCTTTTGGGCCTTTCS
T ss_pred             ECCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCCCCeEEeccCHHHcCCCCCC
Confidence            9999999998 899999999988999999999999999999999999999999999998 6999999999999986 689


Q ss_pred             EEeCCCCccceecchhHHH-hhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhh
Q 019445          151 IVSNASCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPAL  229 (341)
Q Consensus       151 iIsnp~C~tt~Lapllk~L-~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel  229 (341)
                      ||||||||||||+|++|+| |++|||++++|||+||+|++|+++|++++++||++|++++|+||+++|+++++.+++|||
T Consensus       160 IISNaSCTTn~Lap~lkvL~~d~fGI~~g~mTTvha~T~tQ~~vD~~~~kd~r~~r~aa~NiIP~~tGaakav~kVlPeL  239 (359)
T 3ids_C          160 VVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPST  239 (359)
T ss_dssp             EEECCCHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCCTTCTGGGSBGGGCCEEEECSHHHHHHHHSGGG
T ss_pred             EEECCchHhhhHHHhhhhhhhccCCeEEEEEeeeeeccchhhhhcCCccccccccccCcceeEccCCchHHHHhhhchhh
Confidence            9999999999999999999 999999999999999999999999999878999999999999999999999999999999


Q ss_pred             cCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceec
Q 019445          230 NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS  309 (341)
Q Consensus       230 ~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~  309 (341)
                      +||++++|+|||+++||++++++++++++++|||++++++++++||+|||+|+|+|+||+||+|++||||||+.+|++++
T Consensus       240 ~gkltg~avRVPv~~vs~~dlt~~lek~~t~eei~~~lk~A~~g~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~  319 (359)
T 3ids_C          240 QGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNN  319 (359)
T ss_dssp             TTSEEEEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEHHHHHHSS
T ss_pred             cCceEEEEEEcCCCCcEEEEEEEEECCCCCHHHHHHHHHHhccCccCCceeEecCCEEeeecCCCCcceeEecccceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ----CCeEEEEEEeCCCcchhhhHHHHHHHHhhcc
Q 019445          310 ----KNFVKLVSWYDNEWGYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       310 ----~~~~k~~~wydne~gy~~r~~d~~~~~~~~~  340 (341)
                          ++|+|+++||||||||||||+||+.||++++
T Consensus       320 ~~~~~~~vk~~~WYDNE~Gys~r~vdl~~~~~~~~  354 (359)
T 3ids_C          320 LPKERRFFKIVSWYDNEWGYSHRVVDLVRHMASKD  354 (359)
T ss_dssp             CTTCSSEEEEEEEECTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeEEECCCcchHHHHHHHHHHHHhhh
Confidence                9999999999999999999999999999865

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=100.00  E-value=9.3e-106  Score=757.08  Aligned_cols=331  Identities=45%  Similarity=0.733  Sum_probs=320.5

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .|++||||||||||||.++|++++++++|+|+|||. .+.++++|||+|||+||+|+ ++|+.+++ +|.+||+.+++++
T Consensus         2 ~m~~kv~INGfGrIGr~v~R~~~~~~~~~ivaind~-~d~~~~a~l~kyDS~hG~f~-~~v~~~~~-~l~inGk~I~v~~   78 (338)
T 3lvf_P            2 SMAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDL-TDDDMLAHLLKYDTMQGRFT-GEVEVVDG-GFRVNGKEVKSFS   78 (338)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECS-SCHHHHHHHHHCCTTTCCCS-SCEEEETT-EEEETTEEEEEEC
T ss_pred             CccEEEEEECCCcHHHHHHHHHHHCCCceEEEEecC-CCHHHHHHHhccCCCCCCcC-CeEEEcCC-EEEECCEEEEEEE
Confidence            356899999999999999999999999999999995 89999999999999999999 99999888 9999999999999


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CCCeeeeccCccccCCCCcEEeCCCCcccee
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCTTNCL  162 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~L  162 (341)
                      +++|++++|++.++|+||||||.|+++++++.|+++|||+|+||+|++ |+|++|||+|+++|++..+||||||||||||
T Consensus        79 e~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~~d~p~vV~gVN~~~~~~~~~IISNasCTTn~L  158 (338)
T 3lvf_P           79 EPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSL  158 (338)
T ss_dssp             CSCGGGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCSCCSEEECCCHHHHHH
T ss_pred             ecccccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCCCCCCEEeccCCHHHcCccCCeEecCchhhhhh
Confidence            999999999999999999999999999999999999999999999998 5999999999999987789999999999999


Q ss_pred             cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCC-CcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEee
Q 019445          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMK-DWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (341)
Q Consensus       163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~-~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP  241 (341)
                      +|++|+||++|||++++|||+||+|++|+++|+++++ +||++|++++|+||+++|+++++.+++|||+||++++|+|||
T Consensus       159 ap~lkvL~d~fGI~~g~mTTvha~T~~q~~~D~~~~k~d~r~~r~aa~NiIP~~tGaakav~kVlPeL~gkltg~avRVP  238 (338)
T 3lvf_P          159 APVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVP  238 (338)
T ss_dssp             HHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCCTTCCTTTTSCGGGCCEEEECSTTTTGGGTCGGGTTSEEEEEEEES
T ss_pred             HHHHHHHHHhcCEEEEEEeeeccccchhhhhcCCccccccccchhhhceEEeCCCchHHHHhhhchhhcCcEEEEEEEcC
Confidence            9999999999999999999999999999999999876 999999999999999999999999999999999999999999


Q ss_pred             eeeEeeEEEEEEeCC-CCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceec---CCeEEEEE
Q 019445          242 TVDVSVVDLTVRLEK-EATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS---KNFVKLVS  317 (341)
Q Consensus       242 ~~~g~~~~l~v~l~~-~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~---~~~~k~~~  317 (341)
                      +++||++++++++++ ++++|||+++|++++++|    |+|+|+|+||+||+|++||||||+.+|++++   ++|+|+++
T Consensus       239 v~~~s~~dlt~~lek~~~t~eei~~~lk~As~g~----l~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~~~~vk~~~  314 (338)
T 3lvf_P          239 VATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAA  314 (338)
T ss_dssp             CSSCEEEEEEEEESSSSCCHHHHHHHHHHTCCSS----EEEECSCCCGGGGTTCCCSEEEEGGGCEEEEETTEEEEEEEE
T ss_pred             CCceEEEEEEEEEccCCCCHHHHHHHHHHhhcCC----cccccCCEEeEeeCCCCcceEEecccceEecCCCCCEEEEEE
Confidence            999999999999999 999999999999999887    8999999999999999999999999999999   99999999


Q ss_pred             EeCCCcchhhhHHHHHHHHhhccC
Q 019445          318 WYDNEWGYSSRVIDLIVHMAKTQA  341 (341)
Q Consensus       318 wydne~gy~~r~~d~~~~~~~~~~  341 (341)
                      ||||||||||||+||+.||+++-|
T Consensus       315 WYDNE~gys~r~~dl~~~~~~~~~  338 (338)
T 3lvf_P          315 WYDNEMSYTAQLVRTLAYLAELSK  338 (338)
T ss_dssp             EECTTHHHHHHHHHHHHHHHHHTC
T ss_pred             EECCccchHHHHHHHHHHHHhhcC
Confidence            999999999999999999998754

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=100.00  E-value=2.1e-104  Score=751.60  Aligned_cols=329  Identities=49%  Similarity=0.843  Sum_probs=318.0

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |++||||||||+|||+++|+|+++ ++++|+||+. .+.++++|||+|||+||+|+ ++++.+++ +|.+||+.++++++
T Consensus        20 ~~~kVaInGfGrIGr~vlr~l~e~-~~~ivaIndl-~d~~~~a~llkydS~hG~f~-~~v~~~~~-~l~i~Gk~I~v~~~   95 (356)
T 3hja_A           20 GSMKLAINGFGRIGRNVFKIAFER-GIDIVAINDL-TDPKTLAHLLKYDSTFGVYN-KKVESRDG-AIVVDGREIKIIAE   95 (356)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHT-TCEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECC
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHC-CCCEEEEeCC-CCHHHhhhhhccccCCCCCC-CCEEEcCC-EEEECCEEEEEEEc
Confidence            358999999999999999999998 7999999998 79999999999999999999 99998887 99999999999999


Q ss_pred             CCCCCCCccCCCccEEEecCCCccC----HHHHHHHHh-CCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTD----KDKAAAHLK-GGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCT  158 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s----~~~~~~~l~-~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~  158 (341)
                      ++|++++|++.++|+||||||.|++    +++++.|++ +|+|+|+||+|+.| +|++|||+|+++|++..+||||||||
T Consensus        96 ~dp~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps~d~vp~vV~gVN~~~~~~~~~IISNaSCT  175 (356)
T 3hja_A           96 RDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCT  175 (356)
T ss_dssp             SSGGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCCSSCCEECCTTTSGGGCCTTCCEEECCCHH
T ss_pred             CChhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCCCCCCCEEeccCCHHHcCcCccEEECCccc
Confidence            9999999998999999999999999    999999999 99999999999986 79999999999998777999999999


Q ss_pred             cceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEE
Q 019445          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSF  238 (341)
Q Consensus       159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~  238 (341)
                      ||||+|++|+||++|||++++|||+||+|++|+++|+++ ++||++|++++|+||+++|+++++.+++|||++|++++|+
T Consensus       176 Tn~Lap~lkvL~d~fGI~~g~mTTvhA~T~~Q~~~D~p~-kd~r~~r~aa~NIIP~~tGaakav~kVlPeL~gkltg~av  254 (356)
T 3hja_A          176 TNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPH-SDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSM  254 (356)
T ss_dssp             HHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBTTTSCEEEECCTTTTHHHHCGGGTTTEEEEEE
T ss_pred             hhhhhHhHHHHHHhcCeEEEEEEEEEecccccccccCcc-cccccccccccEEEcCCCchHHHHHHhccccCCcEEEEEE
Confidence            999999999999999999999999999999999999987 7999999999999999999999999999999999999999


Q ss_pred             EeeeeeEeeEEEEEEe-CCCCCHHHHHHHHHHhhcCc-ccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEE
Q 019445          239 RVPTVDVSVVDLTVRL-EKEATYEEIKNAIKEESEGK-LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV  316 (341)
Q Consensus       239 rVP~~~g~~~~l~v~l-~~~~~~~ei~~~~~~a~~~~-~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~  316 (341)
                      |||+++||++++++++ ++++++|||+++|++++++| |||||+|+|+|+||+||+|++||||||+.+|++++++|+||+
T Consensus       255 RVPv~~~s~~dlt~~l~ek~~t~eeI~~~lk~Aa~g~~lkgil~yte~~~VS~Df~~~~~ssi~d~~~t~~~~~~~vk~~  334 (356)
T 3hja_A          255 RVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKIL  334 (356)
T ss_dssp             EESCSSCEEEEEEEEESCTTCCHHHHHHHHHHHHHSTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEECSTTEEEEE
T ss_pred             EcCCCccEeEEEEEEEccCCCCHHHHHHHHHHHhcCchhccccceecCCeEeeeccCCCCceEEcCcCCEEEcCCEEEEE
Confidence            9999999999999999 99999999999999999988 999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcchhhhHHHHHHHHhh
Q 019445          317 SWYDNEWGYSSRVIDLIVHMAK  338 (341)
Q Consensus       317 ~wydne~gy~~r~~d~~~~~~~  338 (341)
                      +||||||||||||+||+.||++
T Consensus       335 ~WYDNE~Gys~r~vdl~~~~~~  356 (356)
T 3hja_A          335 SWYDNEFGYSTRVVDLAQKLVK  356 (356)
T ss_dssp             EEECTTHHHHHHHHHHHHHHC-
T ss_pred             EEECCccchHHHHHHHHHHHhC
Confidence            9999999999999999999964

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=100.00  E-value=4.6e-103  Score=744.09  Aligned_cols=334  Identities=65%  Similarity=1.037  Sum_probs=320.3

Q ss_pred             CCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         3 ~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +|.++||||||||||||.++|++++||++|||+|||+..+.++++|||+|||+||+|+ ++++.+++ .|.++|+.+.++
T Consensus         8 ~~~~~kv~INGfGrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~-~~v~~~~~-~l~v~Gk~i~v~   85 (345)
T 2b4r_O            8 HMAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHADG-FLLIGEKKVSVF   85 (345)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEESSCEEEEE
T ss_pred             chhheEEEEeCCchHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCC-CCEEEcCC-EEEECCEEEEEE
Confidence            3557899999999999999999999999999999996689999999999999999999 99998877 899999999999


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccce
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNC  161 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~  161 (341)
                      ++++|++++|++.++|+||||||.|.++++++.|+++|+|+|+||+|+++ +|++|||+|++.|++..+|||||||||||
T Consensus        86 ~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps~~dvplvV~gVN~~~~~~~~~IISNasCTTn~  165 (345)
T 2b4r_O           86 AEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNC  165 (345)
T ss_dssp             CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTCCEEECCCHHHHH
T ss_pred             EcCCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCCCCCCCEEEecCCHHHhCCCCCEEECCchHHHH
Confidence            98899999998889999999999999999999999999999999999986 79999999999998667899999999999


Q ss_pred             ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCC--CCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEE
Q 019445          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPS--MKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFR  239 (341)
Q Consensus       162 Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s--~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~r  239 (341)
                      |+|++|+||++|||++++|||+||+|++|+++|+++  +++||++|++++|+||+++|+++++++++|||+||++++|+|
T Consensus       166 Lap~lk~L~d~fGI~~~~mTTvhA~T~~q~~~d~~~~~~~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avR  245 (345)
T 2b4r_O          166 LAPLAKVINDRFGIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPELNGKLTGVAFR  245 (345)
T ss_dssp             HHHHHHHHHHHHCEEEEEEEEEECCCTTSCSSSCCCGGGCCGGGGSCTTTCCEEEECCHHHHHHHHSGGGTTTEEEEEEE
T ss_pred             HHHHHHHHHHhcCeeEEEEEEeehhhchhhhhcccccccCCCccccchhhccCcCCCchHHHHHHhhhhcCCcEEEEEEE
Confidence            999999999999999999999999999999999997  479999999999999999999999999999999999999999


Q ss_pred             eeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEe
Q 019445          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY  319 (341)
Q Consensus       240 VP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wy  319 (341)
                      ||+++||+.++++++++++++|||+++|++++++||||||+|+|+|+||+||+|++||||||+.+|++++++|+|+++||
T Consensus       246 VPv~~gs~~dltv~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~VS~d~~~~~~ssi~d~~~~~~~~~~~vk~~~Wy  325 (345)
T 2b4r_O          246 VPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWY  325 (345)
T ss_dssp             CSCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEEEEEEEEETTEEEEEEEE
T ss_pred             ecccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCcccccCCCceEEeeCCCCcccccccccCeEecCCEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhhhHHHHHHHHhh
Q 019445          320 DNEWGYSSRVIDLIVHMAK  338 (341)
Q Consensus       320 dne~gy~~r~~d~~~~~~~  338 (341)
                      ||||||||||+||+.||++
T Consensus       326 DNE~gys~r~~dl~~~~~~  344 (345)
T 2b4r_O          326 DNEWGYSNRVLDLAVHITT  344 (345)
T ss_dssp             CTTHHHHHHHHHHHHHHHC
T ss_pred             CCCcchHhHHHHHHHHHhc
Confidence            9999999999999999964

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=100.00  E-value=2.9e-102  Score=737.58  Aligned_cols=329  Identities=45%  Similarity=0.753  Sum_probs=318.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC---CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~---p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |+||||||||+|||.++|+|+++   |++|+|+||+. .+.++++|||+|||+||+|+ ++++.+++ .|.++|+.+.++
T Consensus         1 ~ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~-~~~~~~a~ll~ydS~hg~f~-~~v~~~~~-~l~v~g~~i~v~   77 (335)
T 1obf_O            1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL-GDPKTNAHLTRYDTAHGKFP-GTVSVNGS-YMVVNGDKIRVD   77 (335)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEE
T ss_pred             CcEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCC-CCHHHHHHHhccCCcCCCCC-CCEEEeCC-EEEECCEEEEEE
Confidence            37999999999999999999998   89999999997 89999999999999999999 99998877 899999999999


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CCC-eeeeccCccccCCCCcEEeCCCCccc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAP-MFVVGVNEKEYKPELDIVSNASCTTN  160 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~~-~~V~Gvn~~~~~~~~~iIsnp~C~tt  160 (341)
                      ++++|++++|++.++|+||||||.|+++++++.|+++|+|+|+||+|+. |+| ++|||+|+++|++..+||||||||||
T Consensus        78 ~~~dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~~dvp~~vV~gVN~~~~~~~~~IISNasCTTn  157 (335)
T 1obf_O           78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTN  157 (335)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCCHHHH
T ss_pred             EcCCcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcccCCCCceEEccCCHHHhCcCccEEeCCcHHHH
Confidence            9999999999888999999999999999999999999999999999997 688 99999999999866789999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV  240 (341)
                      ||+|++|+||++|||++++|||+||+|++|+++|+++ ++||++|++++|+||+++|+++++++++|||++|++++|+||
T Consensus       158 ~Lap~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~~~-~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avRV  236 (335)
T 1obf_O          158 CLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRV  236 (335)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCC-SSTTTTSCTTTCCEEEECCHHHHHHHHCGGGTTSEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEchhhhhhhhhcccc-cccccccchhhccccCCCcchHhHhhhccccCCceEEEEEEe
Confidence            9999999999999999999999999999999999985 699999999999999999999999999999999999999999


Q ss_pred             eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD  320 (341)
Q Consensus       241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  320 (341)
                      |+++||+.++++++++++++|||+++|++++++||||||+|+|+|+||+||+|++||||||+.+|++ +++|+|+++|||
T Consensus       237 Pv~~~s~~dl~v~lek~~t~eei~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d~~~~~~-~~~~vk~~~WyD  315 (335)
T 1obf_O          237 PTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTKV-SGRLVKVSSWYD  315 (335)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEE-ETTEEEEEEEEC
T ss_pred             eccceEEEEEEEEECCCCCHHHHHHHHHHhhhcccCCeecccCCceEeeeeCCCCccceeccccccc-cCCEEEEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             CCcchhhhHHHHHHHHhhc
Q 019445          321 NEWGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       321 ne~gy~~r~~d~~~~~~~~  339 (341)
                      |||||||||+||+.||+++
T Consensus       316 NE~gys~r~~dl~~~~~~~  334 (335)
T 1obf_O          316 NEWGFSNRMLDTTVALMSA  334 (335)
T ss_dssp             TTHHHHHHHHHHHHHHHHC
T ss_pred             CCcchHhHHHHHHHHHhcc
Confidence            9999999999999999764

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=100.00  E-value=3.4e-102  Score=738.16  Aligned_cols=329  Identities=48%  Similarity=0.870  Sum_probs=318.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++||||||||+|||.++|+|+++|++|+|+||+. .+.++++|||+|||+||+|+ ++++.+++ .|.++|+.+.+++++
T Consensus         2 ~ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~-~~~~~~a~ll~yDs~hG~~~-~~v~~~~~-~l~v~Gk~i~v~~~~   78 (342)
T 2ep7_A            2 AIKVGINGFGRIGRSFFRASWGREEIEIVAINDL-TDAKHLAHLLKYDSVHGIFK-GSVEAKDD-SIVVDGKEIKVFAQK   78 (342)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecC-CChHHHhhhhhcccccccCC-CcEEEcCC-EEEECCEEEEEEEcC
Confidence            4799999999999999999999999999999996 79999999999999999999 99998877 899999999999989


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCC-eeeeccCccccCC-CCcEEeCCCCccceec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP-MFVVGVNEKEYKP-ELDIVSNASCTTNCLA  163 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~-~~V~Gvn~~~~~~-~~~iIsnp~C~tt~La  163 (341)
                      +|++++|++.++|+||||||.|+++++++.|+++|+|+|+||+|++|.| ++|||+|++.|++ ..+||||||||||||+
T Consensus        79 dp~~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~dvp~~vV~gVN~~~~~~~~~~IISNasCTTn~La  158 (342)
T 2ep7_A           79 DPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLA  158 (342)
T ss_dssp             SGGGCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHHH
T ss_pred             ChhhCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCCCCCceEEcCcCHHHhcccCCeEEECCChHHHHHH
Confidence            9999999888999999999999999999999999999999999999999 9999999999986 5789999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+||++|||++++|||+||+|++|+++|+++ ++||++|++++|+||+++|+++++++++|||++|++++|+|||++
T Consensus       159 p~lk~L~d~fGI~~~~mTTvha~T~~q~~~d~p~-~d~r~~r~~a~NiIP~~tGaakav~kVlP~L~gkltg~avRVPv~  237 (342)
T 2ep7_A          159 PCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPH-KDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVP  237 (342)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGGGCCEEECCCTTGGGGGTSGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHHcCeeEEEEEEEeecccchhhhcCCc-chhhhhhhHhhCccCCCCChHHHHHHhhhccCCCEEEEEEEeccc
Confidence            9999999999999999999999999999999985 799999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCC-CCCHHHHHHHHHHhhcC-------cccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEE
Q 019445          244 DVSVVDLTVRLEK-EATYEEIKNAIKEESEG-------KLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKL  315 (341)
Q Consensus       244 ~g~~~~l~v~l~~-~~~~~ei~~~~~~a~~~-------~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~  315 (341)
                      +||+.++++++++ ++++|||+++|++++++       ||||||+|+|+|+||+||+|++||||||+.+|+++ ++|+|+
T Consensus       238 ~~s~~dltv~lek~~~t~eei~~~lk~a~~~~~~~~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d~~~~~~~-~~~vk~  316 (342)
T 2ep7_A          238 DGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHSAIFDAPLTQVI-DNLVHI  316 (342)
T ss_dssp             SCEEEEEEEEESSCCSCHHHHHHHHHHHHHHHHTSCCGGGTTSEEEECSCCCGGGGTTCCCSEEEEGGGCEEE-TTEEEE
T ss_pred             ceEEEEEEEEEcCCCCCHHHHHHHHHHHhcCCcccccccccccccccCCCeEeeeECCCCccceecccccccc-CCEEEE
Confidence            9999999999999 99999999999999998       99999999999999999999999999999999999 999999


Q ss_pred             EEEeCCCcchhhhHHHHHHHHhhc
Q 019445          316 VSWYDNEWGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       316 ~~wydne~gy~~r~~d~~~~~~~~  339 (341)
                      ++||||||||||||+||+.||+++
T Consensus       317 ~~wyDNE~gys~r~~dl~~~~~~~  340 (342)
T 2ep7_A          317 AAWYDNEWGYSCRLRDLVIYLAER  340 (342)
T ss_dssp             EEEECTTHHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCccchhHHHHHHHHHHhc
Confidence            999999999999999999999875

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=100.00  E-value=3.2e-100  Score=727.36  Aligned_cols=331  Identities=47%  Similarity=0.787  Sum_probs=317.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceee-ecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK-VKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~-~~~~~~l~i~g~~i~v~   82 (341)
                      |+||||||||||||+++|+|.+|  |++||++|||. .+.++++|||+|||.||+|. +++. .+++ .|.++|+.+.++
T Consensus         1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~-~~~~~~a~ll~sds~~G~~~-~~v~~~~~~-~l~v~g~~i~v~   77 (337)
T 1rm4_O            1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT-GGVKQASHLLKYDSILGTFD-ADVKTAGDS-AISVDGKVIKVV   77 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECT-TCHHHHHHHHHCCTTTCSCS-SCEEECTTS-EEEETTEEEEEE
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcC-CCHHHHHHHhcccccCCCcc-ceeEEecCC-eEEECCeEEEEE
Confidence            47999999999999999999999  99999999996 89999999999999999999 8887 5555 788999999999


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccce
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNC  161 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~  161 (341)
                      ++.+|++++|++.++|+||+|||+|.+++.+++|+++|+|+|++|+|++| .|++|||+|+++|+++++|||||||||||
T Consensus        78 ~~~dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r~d~p~~V~GVN~~~~~~~~~IIsNasCtTn~  157 (337)
T 1rm4_O           78 SDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNC  157 (337)
T ss_dssp             CCSCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSCCBCCTTTTGGGCCTTCSEEECCCHHHHH
T ss_pred             ecCChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcccCCCCeEeecCCHHHhCCCCeEEECCChHHHH
Confidence            99899999997678999999999999999999999999999999999986 79999999999998558999999999999


Q ss_pred             ecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEee
Q 019445          162 LAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVP  241 (341)
Q Consensus       162 Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP  241 (341)
                      |+|++|+|+++|||++++|||+||+||+|+++|+++ ++||++|++++|++|+++|+++++.||+|||+|+++++|+|||
T Consensus       158 lap~lk~L~~~fgI~~~~mtTvha~Tgaq~l~d~~~-~~~r~~r~~a~NiiP~~tgaakav~kvlPel~gkl~~~a~RVP  236 (337)
T 1rm4_O          158 LAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVP  236 (337)
T ss_dssp             HHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCTTTCCEEECCCHHHHHHHHCGGGTTTEEEEEEEES
T ss_pred             HHHHHHHHHHhcCeeEEEEEEEEecCCccchhhcch-hhhccchhhhcCcccccchhhHHHHhhhhhhcCcEEEEEEEec
Confidence            999999999999999999999999999999999986 6999999999999999999999999999999999999999999


Q ss_pred             eeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCC
Q 019445          242 TVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDN  321 (341)
Q Consensus       242 ~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydn  321 (341)
                      ++|||++++++++++++++|||+++|++++++||||||+|+|+|+||+||+|++||||||+.+|++++++|+|+++||||
T Consensus       237 ~~~gs~~dl~~~l~k~~t~eei~~~lk~a~~~~lkgil~y~~~~~vs~d~~~~~~s~i~d~~~~~~~~~~~~k~~~wydn  316 (337)
T 1rm4_O          237 TPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDN  316 (337)
T ss_dssp             CSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTEEEEEEEECT
T ss_pred             CCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCcCceecCcCCCeeecccCCCCcccccchhccceecCCEEEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhhHHHHHHHHhhcc
Q 019445          322 EWGYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       322 e~gy~~r~~d~~~~~~~~~  340 (341)
                      ||||||||+|++.||+++.
T Consensus       317 e~gys~r~~d~~~~~~~~~  335 (337)
T 1rm4_O          317 EWGYSQRVVDLADIVANKW  335 (337)
T ss_dssp             THHHHHHHHHHHHHHHHTC
T ss_pred             CccchhhHHHHHHHHhhhc
Confidence            9999999999999998763

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=100.00  E-value=6.1e-100  Score=733.37  Aligned_cols=330  Identities=45%  Similarity=0.801  Sum_probs=318.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |+||||||||||||+++|+|.+|  |++||++|++. .+.++++|||+|||+||+|. +++..+++ .|.++|+.+.+++
T Consensus         2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~-~d~~~~a~ll~yds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~   78 (380)
T 2d2i_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT-SDARTAAHLLEYDSVLGRFN-ADISYDEN-SITVNGKTMKIVC   78 (380)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECS-SCHHHHHHHHHCCTTTCCCC-SCEEEETT-EEEETTEEEEEEC
T ss_pred             CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecC-CCHHHHHHhhcccccCCCCC-CcEEEeCC-eEEECCeEEEEEe
Confidence            48999999999999999999999  99999999997 79999999999999999999 99988777 8999999999998


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CC-eeeeccCccccCC-CCcEEeCCCCccc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-AP-MFVVGVNEKEYKP-ELDIVSNASCTTN  160 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~-~~V~Gvn~~~~~~-~~~iIsnp~C~tt  160 (341)
                      +.||++++|++.++|+||+|||+|.+++.+++|+++|+|+|+||+|+.| .| ++|||+|+++|++ .++||||||||||
T Consensus        79 ~~dp~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~d~~p~~~V~GVN~e~~~~~~~~IVSNasCtTn  158 (380)
T 2d2i_A           79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTN  158 (380)
T ss_dssp             CSCGGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTTTCSEEECCCHHHH
T ss_pred             cCChHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCCCCCCceEEcccCHHHhcccCCcEEECCchHHH
Confidence            8899999997679999999999999999999999999999999999886 68 9999999999986 3689999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV  240 (341)
                      ||+|++|+||++|||++++|||+|++|++|+++|+++ ++||+||++++|++|+++|+++++++++|||+++++++++||
T Consensus       159 ~lap~lk~L~d~fgI~~g~mTTvha~Tg~q~~vD~~~-~d~r~gR~aa~NiIP~~Tgaakav~kvlPeL~gkl~g~avRV  237 (380)
T 2d2i_A          159 CLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV  237 (380)
T ss_dssp             HHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCGGGCCEEEECCHHHHHHHHCGGGTTTEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCeeEEEEEEEeeccccchhhccch-hhhhhcchHhhCeEeccCchHHHHHhhhHhhhCcEEEEEEEe
Confidence            9999999999999999999999999999999999997 699999999999999999999999999999999999999999


Q ss_pred             eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD  320 (341)
Q Consensus       241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  320 (341)
                      |+++||++++++++++++++|||+++|++++++||||||+|+|+|+||+||+|++||||||+.+|++++++|+|+++|||
T Consensus       238 Pt~~gs~~dlt~~l~k~~t~eeI~~~lk~a~~~~lkgil~y~~~~~vS~d~~~~~~ssi~d~~~~~~~~~~~vk~~~wyD  317 (380)
T 2d2i_A          238 PTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYD  317 (380)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred             ccCCEEEEEEEEEECCcCCHHHHHHHHHHHhhCCCCCccCCcCCCeeeeeeCCCCcceEEecccCceecCCEEEEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHHHhhc
Q 019445          321 NEWGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       321 ne~gy~~r~~d~~~~~~~~  339 (341)
                      |||||||||+||+.||+++
T Consensus       318 Ne~gys~r~~d~~~~~~~~  336 (380)
T 2d2i_A          318 NEWGYSQRVVDLAELAARK  336 (380)
T ss_dssp             TTHHHHHHHHHHHHHHHTT
T ss_pred             CCcchHhHHHHHHHHHHhh
Confidence            9999999999999999876

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=100.00  E-value=7.9e-100  Score=724.85  Aligned_cols=329  Identities=66%  Similarity=1.060  Sum_probs=317.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||||||||||+++|+|.+||++||++|++. .+.++++||++|||+||+|. +.++.+++ .|.++|+.+.++++.
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~-~~~~~~a~l~~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v~~~~   77 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER   77 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC-CChhHHhHhhcccccCCCCC-CeEEEcCC-EEEECCEEEEEEEcC
Confidence            4799999999999999999999999999999996 78899999999999999999 88887776 899999999999888


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap  164 (341)
                      ||++++|++.++|+||+|||++.+++.+++|+++|+|+||+|+|+++ .|++|||+|+++|+ +++||||||||||||+|
T Consensus        78 dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~~~~~p~~V~GvN~~~~~-~~~iIsNpsCtt~~lap  156 (330)
T 1gad_O           78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAP  156 (330)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCC-SCSEEECCCHHHHHHHH
T ss_pred             ChhhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCCCCCCCeEeecCCHHHhC-CCCEEEcCChHHHHHHH
Confidence            99999997779999999999999999999999999999999999964 79999999999998 78999999999999999


Q ss_pred             hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeee
Q 019445          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (341)
Q Consensus       165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~  244 (341)
                      ++|+|+++|||+++.|||+||+|++|..+|+++++++|++|.+++|++|+++|+++++.|++||++|+++++|+|||++|
T Consensus       157 ~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~  236 (330)
T 1gad_O          157 LAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPN  236 (330)
T ss_dssp             HHHHHHHHHCEEEEEEEEEECCCTTSBSSSCCCSSCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEEEEECSCSS
T ss_pred             HHHHHHHhcCeeEEEEEEEEecccccccccccccCCCccccchhhCeEEcCCCcchhHHHHHHHhcCcEEEEEEEecccc
Confidence            99999999999999999999999999999999777999999999999999999999999999999999999999999999


Q ss_pred             EeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcc
Q 019445          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWG  324 (341)
Q Consensus       245 g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g  324 (341)
                      ||+++++++++++++.|||+++|+++|++||||||+|+|+|+||+||+|++||||||+.+|++++++|+|+++|||||||
T Consensus       237 g~~~~l~~~l~k~~t~eei~~~~k~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g  316 (330)
T 1gad_O          237 VSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETG  316 (330)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEETTTCEEEETTEEEEEEEECTTHH
T ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHhcCCCCCEEeeECCceeeeeECCCCcceEEecccCeEecCCEEEEEEEECCCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhh
Q 019445          325 YSSRVIDLIVHMAK  338 (341)
Q Consensus       325 y~~r~~d~~~~~~~  338 (341)
                      |||||+|++.||++
T Consensus       317 ys~r~~d~~~~~~~  330 (330)
T 1gad_O          317 YSNKVLDLIAHISK  330 (330)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHhcC
Confidence            99999999999863

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=100.00  E-value=5e-99  Score=722.92  Aligned_cols=333  Identities=64%  Similarity=1.044  Sum_probs=315.7

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +|+||||||||||||+++|+|.+||++||++|+|+..+.++++|||+||++||+|. ++++.+++ .|.++|+.+.++++
T Consensus        16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~-~~v~~~~~-~l~v~g~~i~v~~~   93 (354)
T 3cps_A           16 FQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFN-GTVEVSGK-DLCINGKVVKVFQA   93 (354)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCS-SCEEECC--CEEETTEEEEEECC
T ss_pred             cceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCC-CcEEEeCC-EEEECCeEEEEEec
Confidence            46899999999999999999999999999999995478899999999999999999 88887776 89999999999988


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCC-CcEEeCCCCcccee
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPE-LDIVSNASCTTNCL  162 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~-~~iIsnp~C~tt~L  162 (341)
                      ++|++++|++.++|+||+|||+|.+++.+++|+++|+|+|+||+|+.| .|++|||+|+++|++. ++||||||||||||
T Consensus        94 ~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~padd~~p~~V~GVN~~~~~~~~~~IISNpsCtTn~l  173 (354)
T 3cps_A           94 KDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCL  173 (354)
T ss_dssp             SCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSCCCBCCTTTTGGGCCTTTCSEEECCCHHHHHH
T ss_pred             CChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCCCCCCCEEEeccCHHHhCcCCCcEEECCCcHHHHH
Confidence            899999997679999999999999999999999999999999999886 7999999999999853 79999999999999


Q ss_pred             cchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCC--CCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445          163 APLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSM--KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (341)
Q Consensus       163 apllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~--~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV  240 (341)
                      +|++|+|+++|||++++|||+||+|++|+.+|+++.  ++||++|.+++|++|+++|+++++.|++|||+++++++++||
T Consensus       174 ap~lkpL~~~~gI~~g~mtTvha~Tg~q~~vd~~~~~~k~~r~~r~aa~NiiP~~tG~akei~kvlp~l~gkl~~~a~rV  253 (354)
T 3cps_A          174 APLAKIINDKFGIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALNGKLTGMAIRV  253 (354)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCCCC--CCGGGSCTTSCCEEEECCHHHHHHHHSGGGTTTEEEEEEEE
T ss_pred             HHHHHHHHHhCCeeEEEEEEEecccccchhhhccchhccccccccchhccEEecCcCHHHHHHHHHHhcCCcEEEEEEEe
Confidence            999999999999999999999999999999999852  689999999999999999999999999999999999999999


Q ss_pred             eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD  320 (341)
Q Consensus       241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  320 (341)
                      |++|||++++++++++++++|||+++|+++|++||+|||+|+|+|+||+||+|++||||||+.+|++++++|+|+++|||
T Consensus       254 P~~~gs~~dl~~~l~k~~t~eeI~~~~k~a~~~~lkgil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  333 (354)
T 3cps_A          254 PTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYD  333 (354)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEEETTEEEEEEEEC
T ss_pred             ccCCEEEEEEEEEECCCCCHHHHHHHHHHHhhCCCCCccCccCCCeeeEEEcCCCcceEEecccCeEecCCEEEEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHHHhhc
Q 019445          321 NEWGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       321 ne~gy~~r~~d~~~~~~~~  339 (341)
                      |||||||||+||+.||+++
T Consensus       334 ne~gys~r~~d~~~~~~~~  352 (354)
T 3cps_A          334 NESGYSNRLVDLAVYVASR  352 (354)
T ss_dssp             TTHHHHHHHHHHHHHHHHT
T ss_pred             CCcchHhHHHHHHHHHHhc
Confidence            9999999999999999764

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=100.00  E-value=8.7e-99  Score=718.29  Aligned_cols=330  Identities=54%  Similarity=0.856  Sum_probs=317.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||||||||||+++|+|.+||++||++|++. .+.++++|||+||++||+|. ++++.+++ .|.++|+.+.+++++
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~~~veivain~~-~~~~~~~~ll~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~~~   77 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL-TDANTLAHLLKYDSVHGRLD-AEVSVNGN-NLVVNGKEIIVKAER   77 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC-CCHHHHHHHhccCCcCCCcC-ceEEEccC-cEEECCEEEEEEecC
Confidence            4799999999999999999999999999999996 78999999999999999999 89988777 899999999998888


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-CCcEEeCCCCccceec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLA  163 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt~La  163 (341)
                      +|++++|++.++|+||+|||+|.+++.+++|+++|+|+++||+|+.| .|++|||+|+++|++ .++||||||||||||+
T Consensus        78 dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~d~~p~~V~eVN~~~i~~~~~~IIsNpsCttn~la  157 (334)
T 3cmc_O           78 DPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLA  157 (334)
T ss_dssp             SGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCHHHHHHH
T ss_pred             ChhhcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCccCCCEeccccCHHHhCccCCeEEECCChHHHHHH
Confidence            99999998789999999999999999999999999999999999886 799999999999985 3789999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+|+++|||++++|||+||+||+|+++|+++ +++|++|.+++|++|+++|+++|+.|++|+|+++++++|+|||++
T Consensus       158 p~lkpL~~~~gI~~~~mtTvha~Sg~q~~~d~~~-~~~r~~r~~a~NiiP~~tg~a~ei~kvlp~l~gkl~~~a~rVP~~  236 (334)
T 3cmc_O          158 PFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTP  236 (334)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHhcCceeeeEEEEEeccchhhhccccc-cccccchhhhhCEEeeccCcccchhhhChhhcCcEEEEEEEECCC
Confidence            9999999999999999999999999999999986 699999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCc
Q 019445          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEW  323 (341)
Q Consensus       244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  323 (341)
                      |||++++|+++++++++|||+++|+++|++||+|||+|+|+|+||+||+|++||||||+.+|++++++|+|+++||||||
T Consensus       237 ~gs~~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  316 (334)
T 3cmc_O          237 NVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNET  316 (334)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTEEEEEEEECTTH
T ss_pred             CEEEEEEEEEECCCCCHHHHHHHHHHHhhCccCCcccCCCCCEeeeeeCCCCccceeccccCeEecCCEEEEEEEeCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHhhc
Q 019445          324 GYSSRVIDLIVHMAKT  339 (341)
Q Consensus       324 gy~~r~~d~~~~~~~~  339 (341)
                      ||||||+|++.||+++
T Consensus       317 gys~r~~d~~~~~~~~  332 (334)
T 3cmc_O          317 GYSHRVVDLAAYIASK  332 (334)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHhc
Confidence            9999999999999875

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=100.00  E-value=2.4e-98  Score=716.57  Aligned_cols=331  Identities=44%  Similarity=0.797  Sum_probs=318.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |+||||||||||||+++|+|.+|  |++|+++|++. .+.++++|||+|||+||+|. +++..+++ .|.++|+.+.+++
T Consensus         2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~-~~~~~~~~l~~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~   78 (339)
T 3b1j_A            2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT-SDARTAAHLLEYDSVLGRFN-ADISYDEN-SITVNGKTMKIVC   78 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECS-SCHHHHHHHHHCCTTTCCCC-SCEEEETT-EEEETTEEEEEEC
T ss_pred             ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecC-CCHHHHHHHhccccccCCCC-CcEEEcCC-eeeecCceEEEEe
Confidence            48999999999999999999999  99999999997 79999999999999999999 99988777 8999999999998


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CC-eeeeccCccccCC-CCcEEeCCCCccc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-AP-MFVVGVNEKEYKP-ELDIVSNASCTTN  160 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~-~~V~Gvn~~~~~~-~~~iIsnp~C~tt  160 (341)
                      +.||++++|++.++|+||+|||++.+++.+++|+++|+|+|+||+|+.+ .| ++|||+|+++|++ .++||||||||||
T Consensus        79 ~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~~~~p~~~V~gVN~~~~~~~~~~IISnasCtTn  158 (339)
T 3b1j_A           79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTN  158 (339)
T ss_dssp             CSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCBSSSCEECCTTTTGGGCCTTTCSEEECCCHHHH
T ss_pred             cCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCCCCCCeeEEcccCHHHhCcCCCeEEECCcchhh
Confidence            8899999998779999999999999999999999999999999999886 68 9999999999986 3789999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV  240 (341)
                      ||+|++|+||++|||++++|||+|++|++|+++|+++ ++||+||++++|++|+++|+++++++++|||+++++++++||
T Consensus       159 ~lap~lk~L~~~fgI~~~~~tTvha~Tg~q~~vd~~~-~d~r~~r~a~~NiiP~~tgaakav~kVlpeL~gkl~g~a~rV  237 (339)
T 3b1j_A          159 CLAPVAKVLHDNFGIIKGTMTTTHSYTLDQRILDASH-RDLRRARAAAVNIVPTTTGAAKAVALVIPELKGKLNGIALRV  237 (339)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCTTSCCEEEECSHHHHHHHHCGGGTTTEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCeeEEEEEEEEeecCCchhcccch-hhhhccccHHHceEcccCchHHHHHHHhHhhcCcEEEEEEEe
Confidence            9999999999999999999999999999999999987 599999999999999999999999999999999999999999


Q ss_pred             eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD  320 (341)
Q Consensus       241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  320 (341)
                      |+++||++++++++++++++|||+++|++++++||+||++|+|+|+||+||+|++|||+||+.+|++++++|+|+++|||
T Consensus       238 P~~~g~~~dl~v~l~k~~t~eeI~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  317 (339)
T 3b1j_A          238 PTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDFRGTDESSIVDSSLTLVMDGDLVKVIAWYD  317 (339)
T ss_dssp             SCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHSTTBTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTEEEEEEEEC
T ss_pred             ccCCEEEEEEEEEEcCcCCHHHHHHHHHHhhcCCCCCccCccCCceeehhcCCCCCceEEecccCceecCCEEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHHHhhcc
Q 019445          321 NEWGYSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       321 ne~gy~~r~~d~~~~~~~~~  340 (341)
                      |||||||||+||+.||+++.
T Consensus       318 ne~gys~r~~d~~~~~~~~~  337 (339)
T 3b1j_A          318 NEWGYSQRVVDLAELAARKW  337 (339)
T ss_dssp             TTHHHHHHHHHHHHHHHHTC
T ss_pred             CCcchHhHHHHHHHHHhhhc
Confidence            99999999999999998763

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=100.00  E-value=3.8e-98  Score=715.59  Aligned_cols=334  Identities=86%  Similarity=1.325  Sum_probs=316.2

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeee-cCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV-KDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~-~~~~~l~i~g~~i~v~~   83 (341)
                      ||+||||||||||||+++|+|.+||++||++|+|+..+.++++|+|+|||+||+|.++.++. +++ .|.++|+.+.+++
T Consensus         2 m~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~-~l~~~g~~i~v~~   80 (337)
T 3e5r_O            2 GKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSK-TLLLGEKPVTVFG   80 (337)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSS-EEEETTEEEEEEC
T ss_pred             CceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCC-eeEECCeEEEEEe
Confidence            45899999999999999999999999999999995478899999999999999985124444 455 7889999998888


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceec
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~La  163 (341)
                      ++||++++|++.++|+||+|||++.+++.+++|+++|+|+|+||+|++|.|++|||+|+++|++++++|||||||||||+
T Consensus        81 ~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~d~p~~V~gvN~~~~~~~~~iIsnpsCtt~~la  160 (337)
T 3e5r_O           81 IRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLA  160 (337)
T ss_dssp             CSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCBCCTTTTGGGCCTTCCEEECCCHHHHHHH
T ss_pred             cCChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCCCCCEEEeccCHHHhCCCCcEEECCChHHHHHH
Confidence            88999999977799999999999999999999999999999999999889999999999999855899999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+|+++|||++++|||+||+|++|.++|+++.++||++|.+++|++|+++|+++++.|++||++++++++++|||++
T Consensus       161 ~~lkpL~~~~gI~~~~~ttvha~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~  240 (337)
T 3e5r_O          161 PLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTV  240 (337)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCSGGGSBGGGSCEEEECCHHHHHHHHSGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHhcCccccceeEEEeeccccccccccccccccccccHhhCccccCCCchHHHHHHHHHhCCcEEEEEEEeccC
Confidence            99999999999999999999999999999999876799999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCc
Q 019445          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEW  323 (341)
Q Consensus       244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  323 (341)
                      |||++++++++++++++|||+++|+++|++||+|||+|+|+|+||+||+|++||||||+.+|++++++|+|+++||||||
T Consensus       241 ~g~~~~l~~~l~k~~t~eei~~~~~~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  320 (337)
T 3e5r_O          241 DVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEW  320 (337)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEEETTEEEEEEEECTTH
T ss_pred             CeEEEEEEEEECCCccHHHHHHHHHHHhhCCCCCcccCCCCCeeeeeecCCCCceEEecccCcEecCCEEEEEEEeCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHhhc
Q 019445          324 GYSSRVIDLIVHMAKT  339 (341)
Q Consensus       324 gy~~r~~d~~~~~~~~  339 (341)
                      ||||||+|++.||+++
T Consensus       321 gys~r~~~~~~~~~~~  336 (337)
T 3e5r_O          321 GYSNRVIDLIRHMAKT  336 (337)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             chHhHHHHHHHHHhcc
Confidence            9999999999999765

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=100.00  E-value=1.5e-98  Score=714.78  Aligned_cols=327  Identities=50%  Similarity=0.820  Sum_probs=315.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      +||||||||||||+++|+|++| ++|+++||+. .+.++++|||+|||+||+|. +++..+++ .|.++|+.+.++++++
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~-~~evvaind~-~~~~~~a~ll~~ds~~G~~~-~~v~~~~~-~l~v~g~~i~v~~~~d   76 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSR-GVEVALINDL-TDNKTLAHLLKYDSIYHRFP-GEVAYDDQ-YLYVDGKAIRATAVKD   76 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC-CCEEEEEecC-CCHHHHhHhhhccccCCCCC-ceEEEcCC-EEEECCEEEEEEecCC
Confidence            4899999999999999999999 8999999996 89999999999999999999 99988776 8999999999998889


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-CCcEEeCCCCccceecc
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAP  164 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt~Lap  164 (341)
                      |++++|++.++|+||+|||+|.+++.+++|+++|+|+|+||+|+.| .|++|||+|+++|++ .++||||||||||||+|
T Consensus        77 p~~l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~d~~p~vV~gVN~~~~~~~~~~IIsnasCtTn~lap  156 (331)
T 2g82_O           77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAP  156 (331)
T ss_dssp             GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCCEEECCCHHHHHHHH
T ss_pred             hhhCcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCcCCCCEEeeccCHHHhCcCCCCEEECCChHHHHHHH
Confidence            9999998789999999999999999999999999999999999987 799999999999985 37899999999999999


Q ss_pred             hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeee
Q 019445          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (341)
Q Consensus       165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~  244 (341)
                      ++|+||++|||++++|||+||+||+|+++|+++ ++||++|++++|++|+++|+++++.+++|||+++++++|+|||+++
T Consensus       157 ~lk~L~~~fgI~~~~mtTvha~Tg~q~~~d~~~-~d~r~~r~~a~NiIP~~tGaakav~kIlp~L~gkl~g~a~RVPv~~  235 (331)
T 2g82_O          157 VMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTAT  235 (331)
T ss_dssp             HHHHHHHHTCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGGGCCEEECCCHHHHHTTTCGGGTTSEEEEEEEESCSS
T ss_pred             HHHHHHHhcCccEEEEEEEeecccccchhcccc-ccccccchhhhCccccCCCchhhhhhhHHhcCCCEEEEEEEeCCCC
Confidence            999999999999999999999999999999886 6999999999999999999999999999999999999999999999


Q ss_pred             EeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcc
Q 019445          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWG  324 (341)
Q Consensus       245 g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g  324 (341)
                      ||++++++++++++++|||+++|++++++||+||++|+|+|+||+||+|++||||||+.+|+++ ++|+|+++|||||||
T Consensus       236 gs~~dl~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~-~~~~k~~~wydne~g  314 (331)
T 2g82_O          236 GSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL-GNMVKVFAWYDNEWG  314 (331)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEE-TTEEEEEEEECTTHH
T ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHhhcCccCCccCCCCCCeeeeeeCCCCccceecchhcccc-CCEEEEEEEECCCch
Confidence            9999999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             hhhhHHHHHHHHhhc
Q 019445          325 YSSRVIDLIVHMAKT  339 (341)
Q Consensus       325 y~~r~~d~~~~~~~~  339 (341)
                      |||||+||+.||+++
T Consensus       315 ys~r~~d~~~~~~~~  329 (331)
T 2g82_O          315 YANRVADLVELVLRK  329 (331)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc
Confidence            999999999999864

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=100.00  E-value=2.2e-98  Score=717.81  Aligned_cols=334  Identities=67%  Similarity=1.096  Sum_probs=319.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ||+||||||||||||+++|+|.+||++||++|+++..+.++++||++||++||+|. +.++.+++ .|.++|+.+.++++
T Consensus         2 M~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~-~~~~~~~~-~l~v~g~~i~v~~~   79 (335)
T 1u8f_O            2 GKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH-GTVKAENG-KLVINGNPITIFQE   79 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECC
T ss_pred             CceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCC-CceEEcCC-eEEECCeEEEEEec
Confidence            56899999999999999999999999999999995468899999999999999999 88887776 89999999999988


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap  164 (341)
                      .||++++|++.++|+||+|||++.+++.+++|+++|+|+|++|+|+.|.|++|||+|+++|++++++|||||||||||+|
T Consensus        80 ~d~~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~~~~p~~V~gvN~~~~~~~~~iIsnpsCtt~~l~~  159 (335)
T 1u8f_O           80 RDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAP  159 (335)
T ss_dssp             SSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCTTCSEEECCCHHHHHHHH
T ss_pred             CCHHHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCCCCCCeEEeccCHHHhCCCCCEEECCChHHHHHHH
Confidence            89999999878999999999999999999999999999999999988889999999999998557999999999999999


Q ss_pred             hhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeeee
Q 019445          165 LAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVD  244 (341)
Q Consensus       165 llk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~~  244 (341)
                      ++|+|+++|||++++|||+|++||+|+.+|++++++++++|.+++|++|+++|++++++|++||++++++++++|||++|
T Consensus       160 ~lkpL~~~~gI~~~~~tt~~a~Tg~q~~vd~~~~~~~~~~r~~~~NiiP~~tg~a~ei~kvlpel~gkl~~~a~rVP~~~  239 (335)
T 1u8f_O          160 LAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTAN  239 (335)
T ss_dssp             HHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEEEEEESCSS
T ss_pred             HHHHHHHhCCcceeEEEEEeccccCccccccccccccccchhhhcCceeccCChhHHHHHHHHHhCCcEEEEEEEeccCC
Confidence            99999999999999999999999999999998657999999999999999999999999999999999999999999999


Q ss_pred             EeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCcc
Q 019445          245 VSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWG  324 (341)
Q Consensus       245 g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g  324 (341)
                      ||+++++++++++++.|||+++|+++|++||++|++|+|+|+||+||+|++||||||+.+|++++++|+|+++|||||||
T Consensus       240 g~~~~l~~~l~~~~t~eei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~g  319 (335)
T 1u8f_O          240 VSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFG  319 (335)
T ss_dssp             CEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEEETTEEEEEEEECTTHH
T ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHhhCccCcEEcccCCCcceeeecCCCCceEEeCCCCEEecCCEEEEEEEEcCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhhcc
Q 019445          325 YSSRVIDLIVHMAKTQ  340 (341)
Q Consensus       325 y~~r~~d~~~~~~~~~  340 (341)
                      |||||+|++.||++++
T Consensus       320 y~~r~~~~~~~~~~~~  335 (335)
T 1u8f_O          320 YSNRVVDLMAHMASKE  335 (335)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             hHhHHHHHHHHHhccC
Confidence            9999999999998764

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=3.8e-98  Score=713.33  Aligned_cols=328  Identities=50%  Similarity=0.857  Sum_probs=316.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            7 IKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +||||||||||||+++|+|++|  |++||++|++. .+.++++|||+|||+||+|. +++..+++ .|.++|+.+.++++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~-~~~~~~~~ll~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v~~~   77 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL-TDTKTLAHLLKYDSVHKKFP-GKVEYTEN-SLIVDGKEIKVFAE   77 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS-SCHHHHHHHHHCCTTTCCCS-SCEEECSS-EEEETTEEEEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcC-CChHHhhhhccCcCcCCCcC-CcEEEcCC-EEEECCeEEEEEec
Confidence            5899999999999999999999  99999999996 79999999999999999999 89988777 89999999998888


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCC-eeeeccCccccCCCCcEEeCCCCccceec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAP-MFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~-~~V~Gvn~~~~~~~~~iIsnp~C~tt~La  163 (341)
                      .+|++++|++.++|+||+|||+|.+++.+++|+++|+|+++||+|++|.| ++|||+|+++|+++++||||||||||||+
T Consensus        78 ~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~d~p~~~V~eVN~~~i~~~~~iIsNpsCttn~la  157 (332)
T 1hdg_O           78 PDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIA  157 (332)
T ss_dssp             SSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTCCEEECCCHHHHHHH
T ss_pred             CChHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCCCCCceEEeccCHHHhCCCCcEEECCccHHHHHH
Confidence            89999999777899999999999999999999999999999999988888 99999999999855799999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEeeee
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV  243 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rVP~~  243 (341)
                      |++|+|+++|||++++|||+||+||+|+++|+++ +++|++|.+++|++|+++|+++|+.|++|+++++++++|+|||++
T Consensus       158 p~lkpL~~~~gI~~~~~ttvha~Sg~q~~~d~~~-~~~~~~r~~a~NiiP~~tg~a~ei~kvLp~l~gkl~~~a~rVP~~  236 (332)
T 1hdg_O          158 PIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPH-KDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTP  236 (332)
T ss_dssp             HHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGGGCCEEECCTHHHHHHHHCGGGTTTEEEEEEEESCS
T ss_pred             HHHHHHHHhcCeeEeEEEEEEeccchhhhhcCcc-cccccchhHhhCcccccCCcccchhhhCccccCCEEEEeEEcccc
Confidence            9999999999999999999999999999999986 689999999999999999999999999999999999999999999


Q ss_pred             eEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCCc
Q 019445          244 DVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEW  323 (341)
Q Consensus       244 ~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  323 (341)
                      |||+++++++++++++.|||+++|+++|++||||||+|+|+|+||+||+|++||||||+.+|++++++|+|+++||||||
T Consensus       237 ~g~l~~l~~~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne~  316 (332)
T 1hdg_O          237 DGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEY  316 (332)
T ss_dssp             SCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEETTTEEEEEEEECTTH
T ss_pred             CcEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCcccccCCCeeeeeeCCCCccceeccccCeEecCCEEEEEEEeCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHhh
Q 019445          324 GYSSRVIDLIVHMAK  338 (341)
Q Consensus       324 gy~~r~~d~~~~~~~  338 (341)
                      ||||||+|++.||++
T Consensus       317 gys~r~~d~~~~~~~  331 (332)
T 1hdg_O          317 GYSNRVVDTLELLLK  331 (332)
T ss_dssp             HHHHHHHHHHHHGGG
T ss_pred             cchhHHHHHHHHHhc
Confidence            999999999999975

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=100.00  E-value=1.9e-96  Score=703.98  Aligned_cols=330  Identities=36%  Similarity=0.680  Sum_probs=306.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHc---CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~---~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      ++||||||||||||+++|+|.+   ||++||++|++. .+.++++|||+|||+||+|. ++++.+++ .|.++|+.+.++
T Consensus         2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~-~~~~~~~~ll~~ds~~g~~~-~~v~~~~~-~l~v~g~~i~v~   78 (339)
T 2x5j_O            2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINEL-ADAAGMAHLLKYDTSHGRFA-WEVRQERD-QLFVGDDAIRVL   78 (339)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEE
T ss_pred             CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCC-CCHHHHHHHhcccccCCCCC-ceEEEcCC-eeEECCEEEEEE
Confidence            4899999999999999999999   999999999997 78999999999999999999 88888777 899999999888


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC-CCCC-eeeeccCccccCCCCcEEeCCCCccc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-KDAP-MFVVGVNEKEYKPELDIVSNASCTTN  160 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~-~d~~-~~V~Gvn~~~~~~~~~iIsnp~C~tt  160 (341)
                      ++.||++++|++.++|+||+|||++.+++.+++|+++|+|+|+||+|+ .|.| ++|||+|+++|+++.+||||||||||
T Consensus        79 ~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~ad~d~p~~~V~gvN~~~~~~~~~iIsnpsCttn  158 (339)
T 2x5j_O           79 HERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTN  158 (339)
T ss_dssp             CCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCCHHHH
T ss_pred             ecCChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccccCCCCceeecccCHHHhcCCCCEEECCCcHHH
Confidence            888899999976689999999999999999999999999999999998 5778 99999999999854799999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEEEEEe
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRV  240 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~~~rV  240 (341)
                      ||+|++|+|+++|||++++|||+||+||+|+.+|+++ ++||++|++++|++|+++|+++++.+++|+|+++++++++||
T Consensus       159 ~lap~lkpL~~~~gI~~~~~ttvha~Tg~q~~~d~~~-~d~r~~r~a~~NiiP~~tg~a~ei~kvlp~l~gkl~~~a~rV  237 (339)
T 2x5j_O          159 CIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYH-PDLRRTRAASQSIIPVDTKLAAGITRFFPQFNDRFEAIAVRV  237 (339)
T ss_dssp             HHHHHHHHHHHHHCEEEEEEEEEECCC------------CTTTTSCCCCCCEEECCCHHHHHHHHSGGGTTSEEEEEEEC
T ss_pred             HHHHHHHHHHHccCcceeeEEEEEecccccccccccc-ccccchhhHHhCcccccCChHHHHHHHHHHhcCcEEEEEEEe
Confidence            9999999999999999999999999999999999987 689999999999999999999999999999999999999999


Q ss_pred             eeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEEEEeC
Q 019445          241 PTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD  320 (341)
Q Consensus       241 P~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  320 (341)
                      |++|||+++++++++++++.|||+++|+++|++||+||++|+|+|+||+||+|++|||+||+.+|++++++|+|+++|||
T Consensus       238 P~~~g~~~~l~v~l~k~~t~eei~~~lk~a~~~~l~gil~y~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wyd  317 (339)
T 2x5j_O          238 PTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCD  317 (339)
T ss_dssp             SSCSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEEEEEEEETTTEEEEEEEEC
T ss_pred             cccCcEEEEEEEEECCCCCHHHHHHHHHHHhhcCCCcEEcccCCcccccccCCCCCceEEEcccceeccCCEEEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhhHHHHHHHHhhc
Q 019445          321 NEWGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       321 ne~gy~~r~~d~~~~~~~~  339 (341)
                      |||||||||+|++.||+++
T Consensus       318 ne~gys~r~~d~~~~~~~~  336 (339)
T 2x5j_O          318 NEWGFANRMLDTTLAMATV  336 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             CCcccHhHHHHHHHHHhhh
Confidence            9999999999999999865

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=4.8e-53  Score=404.96  Aligned_cols=238  Identities=20%  Similarity=0.245  Sum_probs=211.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc--cccCcc--cCcee-eecCCcceEECCEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQW--KHNEL-KVKDEKTLLFGEKPVA   80 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d--s~~g~~--~~~~v-~~~~~~~l~i~g~~i~   80 (341)
                      |+||||||||+||+.++|+|.+||++||++|++.  +.++++||++||  ++||+|  . +.+ ...++ .+.+++    
T Consensus         2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~--~~~~~~~l~~~dg~s~~g~~~~~-~~v~~~~~~-~l~v~~----   73 (343)
T 2yyy_A            2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKT--KPDFEARLAVEKGYKLFVAIPDN-ERVKLFEDA-GIPVEG----   73 (343)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEES--SCSHHHHHHHHTTCCEEESSCCH-HHHHHHHHT-TCCCCC----
T ss_pred             ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecC--CHHHHHHHHHhcCCccccccCCC-ceeecccCC-eEEECC----
Confidence            4899999999999999999999999999999996  388899999999  999998  4 444 23333 444443    


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHH-HHHhCCCcEEEecCCCC-C-CC-eeeeccCccccCCCCcEEeCCC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAA-AHLKGGAKKVVISAPSK-D-AP-MFVVGVNEKEYKPELDIVSNAS  156 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~-~~l~~G~k~V~lSa~~~-d-~~-~~V~Gvn~~~~~~~~~iIsnp~  156 (341)
                           +++++.|   ++|+||+|||++.+.+.++ +|+++|++ |++|++.. | .| ++|||+|+++++ ..++|||||
T Consensus        74 -----~~~~~~~---~vDiV~eatg~~~s~~~a~~~~l~aG~~-VI~sap~~~d~vp~~vV~gvN~~~~~-~~~iIsn~s  143 (343)
T 2yyy_A           74 -----TILDIIE---DADIVVDGAPKKIGKQNLENIYKPHKVK-AILQGGEKAKDVEDNFNALWSYNRCY-GKDYVRVVS  143 (343)
T ss_dssp             -----BGGGTGG---GCSEEEECCCTTHHHHHHHHTTTTTTCE-EEECTTSCGGGSSEEECTTTTHHHHT-TCSEEEECC
T ss_pred             -----chHHhcc---CCCEEEECCCccccHHHHHHHHHHCCCE-EEECCCccccCCCceEEcccCHHHhc-cCCEEeccc
Confidence                 2344445   8999999999999999996 99999955 77899876 5 78 999999999998 478999999


Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccc----cCChhHHHHHHhhhhcCc
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS----STGAAKAVGKVLPALNGK  232 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~----~~g~~~~~~~~lpel~~~  232 (341)
                      |+||||+|++|+||++|||++++|||+|++|+.        +   +.+|++++|++|+    .+|+++++.|++|++++|
T Consensus       144 CtT~~lap~lk~L~~~fgI~~~~vtT~~a~sg~--------~---~~~r~~~~NiiP~~i~~~tg~~k~~~kilp~l~gk  212 (343)
T 2yyy_A          144 CNTTGLCRILYAINSIADIKKARIVLVRRAADP--------N---DDKTGPVNAITPNPVTVPSHHGPDVVSVVPEFEGK  212 (343)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEEEEEEEEESSCT--------T---CSSCCCSSCCEESSSSSSCTHHHHHHHHCGGGTTS
T ss_pred             hhhHHHHHHHHHHHHHcCceEEEEEeeeeccCc--------C---cchhhHHhcccCCCCCCCCcchHHHHHhhhccccc
Confidence            999999999999999999999999999999982        1   4568899999999    999999999999999999


Q ss_pred             eeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          233 LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       233 l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                      ++++|+|||+++||+.+++++++++++++||+++|++++.
T Consensus       213 l~~~avRVPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~  252 (343)
T 2yyy_A          213 ILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPR  252 (343)
T ss_dssp             EEEEEEEESCSSCEEEEEEEEEESCCCHHHHHHHHHHSTT
T ss_pred             eeeEEEEecccceEEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999865

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=100.00  E-value=1.1e-47  Score=367.61  Aligned_cols=298  Identities=18%  Similarity=0.187  Sum_probs=221.1

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |+||||+|+ |++|++++|+|++|  |++|++++++.+..++                          .+.++++.+.+ 
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~--------------------------~~~~~~~~i~~-   55 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGK--------------------------TYRFNGKTVRV-   55 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTC--------------------------EEEETTEEEEE-
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCC--------------------------ceeecCceeEE-
Confidence            579999997 99999999999999  8999999997521111                          22234444444 


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC--CCcEEeCCCC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP--ELDIVSNASC  157 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~--~~~iIsnp~C  157 (341)
                      .+.+++  +|.  ++|+||+|||++.+++.++.|+++|+++|++|++++   +.|.+++++|+++|+.  ++++||||||
T Consensus        56 ~~~~~~--~~~--~vDvVf~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~~~~~~iIanp~C  131 (336)
T 2r00_A           56 QNVEEF--DWS--QVHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFRNRNIIANPNC  131 (336)
T ss_dssp             EEGGGC--CGG--GCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGGGGGTTEEECCCH
T ss_pred             ecCChH--Hhc--CCCEEEECCCchHHHHHHHHHHHcCCEEEEcCCccccCCCCCeEeccCCHHHhccccCCcEEECCCh
Confidence            333443  574  899999999999999999999999999999999986   4789999999999984  2779999999


Q ss_pred             ccceecchhHHHhhhcceeEEEEEEEeeccCcce-eeeCCCC-----------CCcccccccccccccccC-----Ch--
Q 019445          158 TTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSM-----------KDWRGGRAASFNIIPSST-----GA--  218 (341)
Q Consensus       158 ~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~-~~d~~s~-----------~~~~~gr~~~~niiP~~~-----g~--  218 (341)
                      ||||++|++++|+++|||+++.|+|+|++||+|+ .+|+.+.           .+++++|++++|++|+++     |.  
T Consensus       132 ~tt~~~~~l~pL~~~~~i~~~~vtt~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~  211 (336)
T 2r00_A          132 STIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNGYPAETNTFSQQIAFNCIPQIDQFMDNGYTK  211 (336)
T ss_dssp             HHHHHHHHHHHHHHHHCEEEEEEEEEEESSSCCTTSCC-----------------------------CCBCTTTCSSCBH
T ss_pred             HHHHHHHHHHHHHHhCCccEEEEEEEEecccCChhhhHHHHHHHHHhhcCCCCCccccchhhhcCcccccCCcccCCccH
Confidence            9999999999999999999999999999999974 7776542           267888999999999975     64  


Q ss_pred             -----hHHHHHHhhhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCC
Q 019445          219 -----AKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVG  293 (341)
Q Consensus       219 -----~~~~~~~lpel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~  293 (341)
                           .++..+++|+++.+++++|+|||++|||+++++++++++++.+||+++|++   .||++++...+-|..-.+..|
T Consensus       212 Ee~k~~~e~~kil~~~~~~v~~t~~rVP~~~g~~~~~~~~l~~~~t~~ei~~~~~~---~~~v~v~~~~~~p~~~~~v~g  288 (336)
T 2r00_A          212 EEMKMVWETQKIFNDPSIMVNPTCVRVPVFYGHAEAVHVETRAPIDAEQVMDMLEQ---TDGIELFRGADFPTQVRDAGG  288 (336)
T ss_dssp             HHHHHHHHHHHHTTCTTCEEEEEEEEESSCBSEEEEEEEEESSCCCHHHHHHHHHH---STTEEECCCCSSGGGCCCCCS
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEeEEeccCcEEEEEEEEEeCCCCCHHHHHHHHHh---CCCeEEECCCCCCcCHHHhCC
Confidence                 445677888888899999999999999999999999999999999999997   789988873332322214444


Q ss_pred             CcceeEEeCCCcceecCCeEEEEEEeCCC-cchhhhHHHHHHHHhh
Q 019445          294 DSRSSIFDAKAGIALSKNFVKLVSWYDNE-WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       294 ~~~s~~~d~~~~~~~~~~~~k~~~wydne-~gy~~r~~d~~~~~~~  338 (341)
                      .-+-.|--..... ..++.+.++++.||- +|-|-+-+-.|+.|-+
T Consensus       289 ~~~~~vgr~~~d~-~~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~~  333 (336)
T 2r00_A          289 KDHVLVGRVRNDI-SHHSGINLWVVADNVRKGAATNAVQIAELLVR  333 (336)
T ss_dssp             SSCEEEEEEEEET-TEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEEecC-CCCCEEEEEEEehhHHHhHHHHHHHHHHHHHh
Confidence            3333221111000 023568889999998 7888888877777754

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-48  Score=371.75  Aligned_cols=293  Identities=21%  Similarity=0.249  Sum_probs=235.7

Q ss_pred             eeEEEEcc-CHHHHHHHHHHH--cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            7 IKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~--~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +||||+|+ ||+|++++|+|.  +||.++++.+.+..             + .           +. .+.++|+.+.++.
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~-------------~-~-----------g~-~l~~~g~~i~v~~   54 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPR-------------S-A-----------GV-RLAFRGEEIPVEP   54 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGG-------------G-S-----------SC-EEEETTEEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccc-------------c-C-----------CC-EEEEcCceEEEEe
Confidence            48999997 999999999999  78877776554320             0 0           11 5667777777665


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCCCcEEeCCCCccc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPELDIVSNASCTTN  160 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt  160 (341)
                      . +++  +|   ++|+||+|||++.++++++.|+++|+++||+|++++   |.|++|||+|+++|+...++|||||||||
T Consensus        55 ~-~~~--~~---~~DvV~~a~g~~~s~~~a~~~~~~G~~vId~s~~~R~~~~~~~~vpevN~~~i~~~~~iIanp~C~tt  128 (331)
T 2yv3_A           55 L-PEG--PL---PVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQHRGIIANPNCTTA  128 (331)
T ss_dssp             C-CSS--CC---CCSEEEECSHHHHHHHHHHHHHHTTCEEEECSSSSTTCTTSCBCCTTSCGGGGGGCSSEEECCCHHHH
T ss_pred             C-Chh--hc---CCCEEEECCCccchHHHHHHHHHCCCEEEECCCccccCCCCCEEEcCcCHHHhcCCCCEEECCCHHHH
Confidence            4 444  57   899999999999999999999999999999999975   57999999999999843689999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccCc------------ceeeeCCCCCCccccccccccccccc--------CChhH
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITAT------------QKTVDGPSMKDWRGGRAASFNIIPSS--------TGAAK  220 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~~------------~~~~d~~s~~~~~~gr~~~~niiP~~--------~g~~~  220 (341)
                      |++|++++|+++|||+++.|+|+|++||+            |.++|+++.++++++|.+++|++|++        ++.++
T Consensus       129 ~~~~~l~pL~~~~~I~~~~vtt~~~~SgaG~~~~~~l~~q~~~~~~~~~~~~~~~~~~~a~niiP~~~~~~~~~ht~e~~  208 (331)
T 2yv3_A          129 ILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHGEAPKAEAFAHPLPFNVIPHIDAFQENGYTREEM  208 (331)
T ss_dssp             HHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHTSSCCCCCSSSSCCTTCCBSCCSCBCTTSCBHHHH
T ss_pred             HHHHHHHHHHHhCCceEEEEEEEeecccCCcchhHHHHHHHHhhhcCccccccccchhhhcCcccccCccccCCCcHHHH
Confidence            99999999999999999999999999998            77889887679999999999999998        66655


Q ss_pred             HH----HHHh--hhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCc---ceeeccc
Q 019445          221 AV----GKVL--PALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE---DVVSTDF  291 (341)
Q Consensus       221 ~~----~~~l--pel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~---~~vs~d~  291 (341)
                      ++    .+++  |+++  ++++|+|||++|||+++++++++++++.+||+++|++   .||++++.-.++   |. ..+.
T Consensus       209 ~i~~e~~kil~~~~l~--v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~---~~~v~v~~~~~~~~~p~-~~~~  282 (331)
T 2yv3_A          209 KVVWETHKIFGDDTIR--ISATAVRVPTLRAHAEAVSVEFARPVTPEAAREVLKE---APGVEVVDEPEAKRYPM-PLTA  282 (331)
T ss_dssp             HHHHHHHHHTTCTTCE--EEEECCBCSCSSEEEEEEEEEESSCCCHHHHHHHHTT---STTCCBCCBTTTTBCCC-HHHH
T ss_pred             HHHHHHHHHhCCCCce--EEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHc---CCCeEEEeCCCcCCCCC-hhhc
Confidence            56    7787  8875  9999999999999999999999999999999999886   678888753211   11 1144


Q ss_pred             CCCcceeEEeCCCcceecCCeEEEEEEeCCC-cchhhhHHHHHHHHhh
Q 019445          292 VGDSRSSIFDAKAGIALSKNFVKLVSWYDNE-WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       292 ~~~~~s~~~d~~~~~~~~~~~~k~~~wydne-~gy~~r~~d~~~~~~~  338 (341)
                      .|.-+-.|--.... ...++.+.++++.||- +|.|-+-+-.|+.|.+
T Consensus       283 ~g~~~~~igr~~~d-~~~~~~l~~~~~~DNl~kGAAg~AVq~~nl~~~  329 (331)
T 2yv3_A          283 SGKWDVEVGRIRKS-LAFENGLDFFVVGDQLLKGAALNAVQIAEEWLK  329 (331)
T ss_dssp             TTCSSEEEEEEEEC-SSSTTEEEEEEEEETTHHHHTTHHHHHHHHHC-
T ss_pred             cCCceEEEEEEEEC-CCCCCEEEEEEEechHHHHHHHHHHHHHHHHhh
Confidence            44443333211111 0134678999999999 8999998888888754

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=1e-47  Score=368.35  Aligned_cols=298  Identities=15%  Similarity=0.140  Sum_probs=233.1

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHH--cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            5 KKIKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~--~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      |++||+|+|+ |++|++++|+|.  +||.++++++++....++                          .+.++|..+.+
T Consensus         5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~--------------------------~~~~~g~~i~~   58 (340)
T 2hjs_A            5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ--------------------------RMGFAESSLRV   58 (340)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC--------------------------EEEETTEEEEC
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCC--------------------------ccccCCcceEE
Confidence            3579999998 999999999999  889999999987521111                          12233443433


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCCC---cEEeCCC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPEL---DIVSNAS  156 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~~---~iIsnp~  156 (341)
                      . +.+++.  |.  ++|+||+|+|++.+++.++.++++|+|+|++|++++|  .|.+++++|+++|+ .+   ++|||||
T Consensus        59 ~-~~~~~~--~~--~~DvV~~a~g~~~s~~~a~~~~~aG~kvId~Sa~~rd~~~~~~vpevN~~~i~-~~~~~~iIanp~  132 (340)
T 2hjs_A           59 G-DVDSFD--FS--SVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLA-SQAAPFLLSSPC  132 (340)
T ss_dssp             E-EGGGCC--GG--GCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGG-GSCSSCEEECCC
T ss_pred             e-cCCHHH--hc--CCCEEEEcCCcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCeEEcCcCHHHHh-cCcCCCEEEcCC
Confidence            2 334433  64  8999999999999999999999999999999999874  57788889999998 34   7999999


Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcce-eeeCCCC--CC---------cccccccccccccccC-----C--
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-TVDGPSM--KD---------WRGGRAASFNIIPSST-----G--  217 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~-~~d~~s~--~~---------~~~gr~~~~niiP~~~-----g--  217 (341)
                      |||||++|++++|+++|||+++.|+|+|++||+|+ .+|....  ++         ..++|.+++|++|+++     |  
T Consensus       133 C~tt~~~~~l~pL~~~~~i~~~~v~t~~~~SgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~  212 (340)
T 2hjs_A          133 AVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHS  212 (340)
T ss_dssp             HHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSCB
T ss_pred             HHHHHHHHHHHHHHHhcCcceEEEEEecccCCCCccccHhHHHHHHHHhccCCccccccchhhccCeeccccCcccCCcc
Confidence            99999999999999999999999999999999985 3564210  12         3345778999999987     6  


Q ss_pred             -----hhHHHHHHhhhhcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccC
Q 019445          218 -----AAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFV  292 (341)
Q Consensus       218 -----~~~~~~~~lpel~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~  292 (341)
                           ..++..+++|+++++++++|+|||++|||++++|++++++++.+||+++|++   +||++++...+-|-...+..
T Consensus       213 ~Ee~k~~~~~~kil~~~~~~v~~~~~rVP~~~g~~~~~~~~l~~~~t~eei~~~~~~---~~~V~v~~~~~~p~~~~~v~  289 (340)
T 2hjs_A          213 AIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDA---TKGIEWVGEGDYPTVVGDAL  289 (340)
T ss_dssp             HHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHH---STTEEECCTTCCCCCCCCCT
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeEEcCcCceEEEEEEEEECCCCCHHHHHHHHhc---CCCcEEeCCCCCCccHHHcC
Confidence                 3445688889999999999999999999999999999999999999999985   68998887333332221445


Q ss_pred             CCcceeEEeCCCcceecCCeEEEEEEeCC-CcchhhhHHHHHHHHhh
Q 019445          293 GDSRSSIFDAKAGIALSKNFVKLVSWYDN-EWGYSSRVIDLIVHMAK  338 (341)
Q Consensus       293 ~~~~s~~~d~~~~~~~~~~~~k~~~wydn-e~gy~~r~~d~~~~~~~  338 (341)
                      |.-+-.|--..... ..++.+.+.+|.|| .+|.|-.-+-.++.|.+
T Consensus       290 g~~~~~vgr~r~~~-~~~~~l~~~~~~DNl~kGAA~~avq~~~l~~~  335 (340)
T 2hjs_A          290 GQDETYVGRVRAGQ-ADPCQVNLWIVSDNVRKGAALNAVLLGELLIK  335 (340)
T ss_dssp             TSSCEEEEEEEECS-SCTTEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEEecC-CCCCEEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence            54433332222111 13567899999999 99999999888888754

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=100.00  E-value=6e-48  Score=372.37  Aligned_cols=294  Identities=14%  Similarity=0.135  Sum_probs=234.0

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +++||||+|+ ||+|++++|+|.+||++|++++++....+      .+|++.||+|. +.+ .  . .+.        +.
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g------~~~~~~~~~~~-~~v-~--~-dl~--------~~   75 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG------QSMESVFPHLR-AQK-L--P-TLV--------SV   75 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT------SCHHHHCGGGT-TSC-C--C-CCB--------CG
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC------CCHHHhCchhc-Ccc-c--c-cce--------ec
Confidence            3589999997 99999999999999999999999863222      35788888887 321 0  0 111        11


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CC------------------Ceeeecc---C
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DA------------------PMFVVGV---N  141 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~------------------~~~V~Gv---n  141 (341)
                        + ++ .|+  ++|+||+|||++.+++.++.+ ++|+++||+|++++ +.                  ++++||+   |
T Consensus        76 --~-~~-~~~--~vDvVf~atp~~~s~~~a~~~-~aG~~VId~sa~~R~~~~~~y~~~y~~~~~~~~~l~~~vygvpE~n  148 (359)
T 1xyg_A           76 --K-DA-DFS--TVDAVFCCLPHGTTQEIIKEL-PTALKIVDLSADFRLRNIAEYEEWYGQPHKAVELQKEVVYGLTEIL  148 (359)
T ss_dssp             --G-GC-CGG--GCSEEEECCCTTTHHHHHHTS-CTTCEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHH
T ss_pred             --c-hh-Hhc--CCCEEEEcCCchhHHHHHHHH-hCCCEEEECCccccCCchhhhhhhhcCCcCChhhcCCceEECCccC
Confidence              1 22 464  899999999999999999999 99999999999886 22                  5799999   8


Q ss_pred             ccccCCCCcEEeCCCCccceecchhHHHhhhccee--EEEEEEEeeccCcce-eeeCCCCCCcccccccccccccccCCh
Q 019445          142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQK-TVDGPSMKDWRGGRAASFNIIPSSTGA  218 (341)
Q Consensus       142 ~~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~--~~~ittv~a~s~~~~-~~d~~s~~~~~~gr~~~~niiP~~~g~  218 (341)
                      +++|+ .+++||||||||||++|++++|+++|+|+  ++.|+|+|++||+|+ ..|+.+ ++     .+..|++||.++.
T Consensus       149 ~~~i~-~~~iIanpgC~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~-~~-----~~~~ni~py~~~~  221 (359)
T 1xyg_A          149 REDIK-KARLVANPGCYPTTIQLPLVPLLKANLIKHENIIIDAKSGVSGAGRGAKEANL-YS-----EIAEGISSYGVTR  221 (359)
T ss_dssp             HHHHH-TCSEEECCCHHHHHHHHHHHHHHHTTCBCSSSCEEEEEEEGGGGCSCCCGGGB-HH-----HHTTCCEECSCSC
T ss_pred             HHHhc-cCCEEECCCcHHHHHHHHHHHHHHcCCCCCCeEEEEEEEEccccCcccchhhh-hH-----HHhcCeecccccc
Confidence            99998 58999999999999999999999999999  999999999999887 355432 12     3467999999885


Q ss_pred             hHHHHHHhhhhc---C-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCccee
Q 019445          219 AKAVGKVLPALN---G-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVV  287 (341)
Q Consensus       219 ~~~~~~~lpel~---~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~v  287 (341)
                          |+|+||++   +       +++++|+|||++|||++++|++++++++.+||+++|+++|+ +||++++...+-|-.
T Consensus       222 ----h~h~pEi~~~l~~~~~~~~~v~~t~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~V~v~~~~~~p~~  297 (359)
T 1xyg_A          222 ----HRHVPEIEQGLSDVAQSKVTVSFTPHLMPMIRGMQSTIYVEMAPGVRTEDLHQQLKTSYEDEEFVKVLDEGVVPRT  297 (359)
T ss_dssp             ----CTHHHHHHHHHHHHHTSCCCCEEECEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCSSEEECCTTCCCBG
T ss_pred             ----cccHHHHHHHHHHhcCCCCCEEEEEEEecccceEEEEEEEEeCCCCCHHHHHHHHHHhhCCCCCEEEcCCCCCCCH
Confidence                67888887   4       68999999999999999999999999999999999999998 699999864333432


Q ss_pred             ecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC-cchhhhHHHHHHHHhhc
Q 019445          288 STDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE-WGYSSRVIDLIVHMAKT  339 (341)
Q Consensus       288 s~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne-~gy~~r~~d~~~~~~~~  339 (341)
                      - +..|.-+-.|- .....  .++.+.++++.||- .|.|-+-+-.++.|-..
T Consensus       298 ~-~v~g~n~~~ig-~~~d~--~~~~l~~~~~~DNl~kGAAg~Avq~~nl~~g~  346 (359)
T 1xyg_A          298 H-NVRGSNYCHMS-VFPDR--IPGRAIIISVIDNLVKGASGQALQNLNIMLGY  346 (359)
T ss_dssp             G-GTTTSSCEEEE-EEECS--STTEEEEEEEECTTTTTTHHHHHHHHHHHTTS
T ss_pred             H-HhcCCCeEEEE-EEEeC--CCCEEEEEEEehhhhHhHHHHHHHHHHHHhCC
Confidence            2 34444333331 11111  24678999999999 89999999888888654

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=1.8e-48  Score=372.99  Aligned_cols=240  Identities=21%  Similarity=0.272  Sum_probs=198.4

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc--cccCcccCcee-eecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNEL-KVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d--s~~g~~~~~~v-~~~~~~~l~i~g~~i~v~   82 (341)
                      |+||||+|+||+|++++|+|.+||++++++|++.  +....+++++++  ++||.|. +.+ ..++. .+.+++      
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~--~~~~~~~~~~~~g~~~~~~~~-~~v~~~~~~-~l~v~~------   70 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT--RPDFEARMALKKGYDLYVAIP-ERVKLFEKA-GIEVAG------   70 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEES--SCSHHHHHHHHTTCCEEESSG-GGHHHHHHT-TCCCCE------
T ss_pred             CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcC--ChhHHHHhcCCcchhhccccc-cceeeecCC-ceEEcC------
Confidence            4799999999999999999999999999999986  345566777776  7888887 543 22222 233321      


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CC--CeeeeccCccccCCCCcEEeCCCCcc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DA--PMFVVGVNEKEYKPELDIVSNASCTT  159 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~--~~~V~Gvn~~~~~~~~~iIsnp~C~t  159 (341)
                         +++++.   .++|+||+|||++.+++.+++++++|+++++.+ +.. |.  |++|||+|+++++ +.++||||||||
T Consensus        71 ---~~~~~~---~~vDvV~~atp~~~~~~~a~~~l~aG~~VId~s-p~~~d~~~~~~V~gvN~e~~~-~~~iIanp~C~t  142 (337)
T 1cf2_P           71 ---TVDDML---DEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQG-GEKHEDIGLSFNSLSNYEESY-GKDYTRVVSCNT  142 (337)
T ss_dssp             ---EHHHHH---HTCSEEEECCSTTHHHHHHHHHHHHTCCEEECT-TSCHHHHSCEECHHHHGGGGT-TCSEEEECCHHH
T ss_pred             ---CHHHHh---cCCCEEEECCCchhhHHHHHHHHHcCCEEEEec-CCCCccCCCeEEeeeCHHHhc-CCCEEEcCCcHH
Confidence               122221   279999999999999999999999998755544 434 33  8999999999998 579999999999


Q ss_pred             ceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccc----cCChhHHHHHHhhhhcCceeE
Q 019445          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS----STGAAKAVGKVLPALNGKLTG  235 (341)
Q Consensus       160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~----~~g~~~~~~~~lpel~~~l~~  235 (341)
                      ||++|++++|+++|||+++.|+|+|++|+       +    ++.+|.+++|++|+    .++.++++.|++ +++  +++
T Consensus       143 t~l~~~l~pL~~~~gI~~~~vtt~~a~s~-------p----~~~~~~~~~NiiP~~i~~~~~~~~ei~kil-~l~--v~~  208 (337)
T 1cf2_P          143 TGLCRTLKPLHDSFGIKKVRAVIVRRGAD-------P----AQVSKGPINAIIPNPPKLPSHHGPDVKTVL-DIN--IDT  208 (337)
T ss_dssp             HHHHHHHHHHHHHHCEEEEEEEEEEESSC-------T----TCTTCCCSSCCEESSSSSSCTHHHHHHTTS-CCC--EEE
T ss_pred             HHHHHHHHHHHHhcCcceeEEEEEEEeec-------C----CccccchhcCEEeccCCCCCcchHHHHhhh-eeE--EEE
Confidence            99999999999999999999999999886       2    24557889999999    677889999999 885  999


Q ss_pred             EEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCccccccc
Q 019445          236 MSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILG  280 (341)
Q Consensus       236 ~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~  280 (341)
                      +|+|||++|||+.++|++++++++.+|++++|+++   ||.+++.
T Consensus       209 t~~rVPv~~g~~~~~~v~l~~~~t~eei~~~~~~~---~~v~v~~  250 (337)
T 1cf2_P          209 MAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDT---PRVILIS  250 (337)
T ss_dssp             EEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHS---TTEEEEC
T ss_pred             EEEEcCccCeEEEEEEEEECCCCCHHHHHHHHHhC---CCcEEec
Confidence            99999999999999999999999999999999987   4555543

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=100.00  E-value=1.2e-44  Score=347.76  Aligned_cols=289  Identities=13%  Similarity=0.056  Sum_probs=224.7

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||+|+ |++|++++|+|.+||++|++++++....+      .++++.||.|. +.     . .       +.+.  
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g------~~~~~~~~~~~-g~-----~-~-------~~~~--   61 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG------EPVHFVHPNLR-GR-----T-N-------LKFV--   61 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT------SBGGGTCGGGT-TT-----C-C-------CBCB--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC------chhHHhCchhc-Cc-----c-c-------cccc--
Confidence            589999997 99999999999999999999999863222      35678888776 21     0 1       1111  


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CC-----------------Ceeeecc---Ccc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DA-----------------PMFVVGV---NEK  143 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~-----------------~~~V~Gv---n~~  143 (341)
                       +.+  .|  .++|+||+|+|++.+++.+++++++|+++|++|++++ +.                 ++++||+   |++
T Consensus        62 -~~~--~~--~~vDvV~~a~g~~~s~~~a~~~~~aG~~VId~Sa~~r~~~~~~y~~~y~~h~~~e~l~~~vygvpE~n~~  136 (345)
T 2ozp_A           62 -PPE--KL--EPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPRPDLLGRFVYAVPELYRE  136 (345)
T ss_dssp             -CGG--GC--CCCSEEEECCCTTHHHHTHHHHHTTCSEEEECSSTTSCSCHHHHHHHHCCCSSGGGTTSSEECCHHHHHH
T ss_pred             -chh--Hh--cCCCEEEEcCCcHHHHHHHHHHHHCCCEEEEcCccccCCChHHHHhhhccccchhhhccCcEeccccCHH
Confidence             222  36  3899999999999999999999999999999999876 22                 4799999   889


Q ss_pred             ccCCCCcEEeCCCCccceecchhHHHhhhccee--EEEEEEEeeccCccee-eeCCCCCCcccccccccccccccCChhH
Q 019445          144 EYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSMKDWRGGRAASFNIIPSSTGAAK  220 (341)
Q Consensus       144 ~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~--~~~ittv~a~s~~~~~-~d~~s~~~~~~gr~~~~niiP~~~g~~~  220 (341)
                      +++ .+++||||||||||++|++++|+++|+|+  ++.|+|+|++||+|+. +|..+ ++     .+..|++||.++.  
T Consensus       137 ~i~-~~~iIanp~C~tt~~~~~l~pL~~~~~i~~~~i~v~t~~~~SGaG~~~~~~~~-~~-----~~~~n~~py~~~~--  207 (345)
T 2ozp_A          137 ALK-GADWIAGAGCNATATLLGLYPLLKAGVLKPTPIFVTLLISTSAGGAEASPASH-HP-----ERAGSIRVYKPTG--  207 (345)
T ss_dssp             HHH-TCSEEECCCHHHHHHHHHHHHHHHTTCBCSSCEEEEEEECSGGGCSSCCGGGC-HH-----HHTTCCEEEECSC--
T ss_pred             Hhh-cCCEEeCCCcHHHHHHHHHHHHHHhcCCCCCeEEEEEEEEccccCcccccccc-ch-----hhccccccCCCCC--
Confidence            998 58999999999999999999999999999  9999999999999853 45432 12     3567999999884  


Q ss_pred             HHHHHhhhhc-----C-ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccC----CCcceeec
Q 019445          221 AVGKVLPALN-----G-KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGY----TEEDVVST  289 (341)
Q Consensus       221 ~~~~~lpel~-----~-~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~----~~~~~vs~  289 (341)
                        |+|+||++     + +++++|+|||++|||++++|++++++++.+||+++|+++|+ +||+++++-    .+-|..- 
T Consensus       208 --h~~~pei~~~l~~~~~v~~~~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~y~~~~~v~v~~~~~~~~~~p~~~-  284 (345)
T 2ozp_A          208 --HRHTAEVVENLPGRPEVHLTAIATDRVRGILMTAQCFVQDGWSERDVWQAYREAYAGEPFIRLVKQKKGVHRYPDPR-  284 (345)
T ss_dssp             --CTHHHHHHHTSSSCCCEEEEEEECSCSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECCCSSSSCCSCCHH-
T ss_pred             --ccChHhHHHHhCCCCCeEEEEEEeccccEEEEEEEEEeCCCCCHHHHHHHHHHHhCCCCCEEEEeCCCCcCCCCCHH-
Confidence              78999998     5 89999999999999999999999999999999999999998 699999832    1122211 


Q ss_pred             ccCCCcceeEEeCCCccee--cCCeEEEEEEeCCC-cchhhhHHHHHHHHhh
Q 019445          290 DFVGDSRSSIFDAKAGIAL--SKNFVKLVSWYDNE-WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       290 d~~~~~~s~~~d~~~~~~~--~~~~~k~~~wydne-~gy~~r~~d~~~~~~~  338 (341)
                      +..|.-+-.|   +  ...  ..+.+.+++=-||= +|=|-+-+-.|+.|-.
T Consensus       285 ~~~g~~~~~i---g--~~~d~~~~~~~~~~~~DNl~kGAAg~Avq~~nl~~g  331 (345)
T 2ozp_A          285 FVQGTNYADI---G--FELEEDTGRLVVMTAIDNLVKGTAGHALQALNVRMG  331 (345)
T ss_dssp             HHTTSCCEEE---E--EEEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHTT
T ss_pred             HhcCCceEEE---E--EEEeCCCCEEEEEEEeccHHHHHHHHHHHHHHHHhC
Confidence            2233222212   1  111  13556777778995 5766666666666654

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=100.00  E-value=5.9e-45  Score=350.63  Aligned_cols=302  Identities=20%  Similarity=0.185  Sum_probs=222.1

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC-CCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND-PFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~-~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +|+||||+|+ ||+|++++|+|.+||++||+++++ .+..++      .+++.|+.+. .      + .+.+++..+.+ 
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~------~~~~~~~~~~-~------~-~~~~~~~~~~~-   67 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGK------KYKDAVKWIE-Q------G-DIPEEVQDLPI-   67 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTS------BHHHHCCCCS-S------S-SCCHHHHTCBE-
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCC------CHHHhcCccc-c------c-ccccCCceeEE-
Confidence            4689999997 999999999999999999999983 322222      3567776552 0      0 11111112222 


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC----------CC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP----------EL  149 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~----------~~  149 (341)
                      .+.+++.  |  .++|+||+|||++.+++.++.++++|+++|++|++++   +.|.+++|+|++.|..          ++
T Consensus        68 ~~~d~~~--~--~~vDvVf~atp~~~s~~~a~~~~~aG~~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~  143 (350)
T 2ep5_A           68 VSTNYED--H--KDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEINWEHLELLKFQKERKGWKG  143 (350)
T ss_dssp             ECSSGGG--G--TTCSEEEECCCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGHHHHHHHHTCSS
T ss_pred             eeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEECCccccCCCCCCeeCCccCHHHhcChHhhhhhcccCc
Confidence            2233433  5  3899999999999999999999999999999988875   5789999999887752          35


Q ss_pred             cEEeCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCCh-hH---HHHHH
Q 019445          150 DIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA-AK---AVGKV  225 (341)
Q Consensus       150 ~iIsnp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~-~~---~~~~~  225 (341)
                      ++||||||||||++|++++|+++|||+++.++|+|++||+|+.  +.      ..+.+++|++||+++. ++   |+.|+
T Consensus       144 ~iIanpgC~tt~~~l~l~pL~~~~gi~~i~v~t~~~~SGaG~~--~~------~~~~~~~ni~py~~~~e~k~~~E~~~~  215 (350)
T 2ep5_A          144 ILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGYN--GI------SFMAIEGNIIPYIKGEEDKIAKELTKL  215 (350)
T ss_dssp             EEEECCCHHHHHHHHHHGGGHHHHHTSEEEEEEEECGGGGCSS--SS------BHHHHTTCCBCCCTTHHHHHHHHHHHH
T ss_pred             eEEEcCchHHHHHHHHHHHHHHhcCCcEEEEEEEEecCcCCCC--CC------CChHHhCCEEeccCCcchHHHHHHHHH
Confidence            7999999999999999999999999999999999999998874  22      2457789999999985 44   34677


Q ss_pred             hhhhcC--------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-----------CcccccccCCCcce
Q 019445          226 LPALNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-----------GKLKGILGYTEEDV  286 (341)
Q Consensus       226 lpel~~--------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-----------~~~~~il~~~~~~~  286 (341)
                      +|+++|        +++++|+|||++|||++++|++++++++.+||+++|+++|+           +||++++...+-|.
T Consensus       216 l~~~~g~~~~~~~~~v~~t~~rvP~~~g~~~~i~~~l~~~~t~eei~~~~~~~~~~~~~~~~~~~~~~fv~v~~~~~~P~  295 (350)
T 2ep5_A          216 NGKLENNQIIPANLDSTVTSIRVPTRVGHMGVINIVTNERINIEEIKKTLKNFKSLPQQKNLPTAPKQPIIVRDEEDRPQ  295 (350)
T ss_dssp             TCEECSSSEECCCCEEEEEEEECSCSSCEEEEEEEECCSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEECCSTTCCC
T ss_pred             HhhccccccccccccEEEEeEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhccccccccCCCCCCcEEECCCCCCCc
Confidence            887765        79999999999999999999999999999999999999995           48888875333332


Q ss_pred             eec--ccCCCcceeEEeCCCcceecCCeEEEEEEeCCC-cchhhhHHHHHHHHh
Q 019445          287 VST--DFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE-WGYSSRVIDLIVHMA  337 (341)
Q Consensus       287 vs~--d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne-~gy~~r~~d~~~~~~  337 (341)
                      .-.  +-++ ...+.+  + ....+.+.+.+++=-||= +|=|-+-+-.|+.|-
T Consensus       296 ~~~~~~~~~-~~~~~v--g-r~~~d~~~l~~~~~~DNl~kGAAg~Avqn~nl~~  345 (350)
T 2ep5_A          296 PIIDVNAES-GMAVTV--G-RIRHENNVLRLVVLGDNLVRGAAGITILTVEVMK  345 (350)
T ss_dssp             HHHHTTHHH-HTSEEE--E-EEEEETTEEEEEEEECTTTTTTHHHHHHHHHHHH
T ss_pred             eEEecccCC-CceEEE--E-EEEecCCEEEEEEEeccHHHhHHHHHHHHHHHHH
Confidence            111  1111 001111  0 011122346666668995 465555555555554

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=100.00  E-value=3.2e-44  Score=342.72  Aligned_cols=289  Identities=15%  Similarity=0.133  Sum_probs=225.2

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCC---CChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPF---ISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~---~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      |+||+|+|+ |++|++++|+|.+||++|++.+.+.+   ..++.+      ...|+.|. +..      .       +.+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~------~~~~p~~~-~~~------~-------~~v   63 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLI------SDLHPQLK-GIV------E-------LPL   63 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBH------HHHCGGGT-TTC------C-------CBE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCch------HHhCcccc-Ccc------c-------eeE
Confidence            479999999 99999999999999999999998764   333322      23455554 210      1       111


Q ss_pred             EecC-CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC--C--C---------------Ceeeecc-
Q 019445           82 FGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--D--A---------------PMFVVGV-  140 (341)
Q Consensus        82 ~~~~-~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~--d--~---------------~~~V~Gv-  140 (341)
                       ++. ++++  | ..++|+||+|+|++.+++.+++++++|+|+||+|++++  |  .               +++|||+ 
T Consensus        64 -~~~~~~~~--~-~~~~Dvvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~fR~~d~~v~~~wy~~~~~~p~l~~~~vyglP  139 (337)
T 3dr3_A           64 -QPMSDISE--F-SPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLA  139 (337)
T ss_dssp             -EEESSGGG--T-CTTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHTSSCCSCHHHHHHCEECCT
T ss_pred             -eccCCHHH--H-hcCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCccccCCcccchhhccccccChhhhcceEEEcc
Confidence             111 2222  2 14899999999999999999999999999999999986  2  2               1578999 


Q ss_pred             --CccccCCCCcEEeCCCCccceecchhHHHhh--hcceeEE-EEEEEeeccCcc-eeeeCCCCCCcccccccccccccc
Q 019445          141 --NEKEYKPELDIVSNASCTTNCLAPLAKVIHD--KFGIVEG-LMTTVHSITATQ-KTVDGPSMKDWRGGRAASFNIIPS  214 (341)
Q Consensus       141 --n~~~~~~~~~iIsnp~C~tt~Lapllk~L~~--~fgi~~~-~ittv~a~s~~~-~~~d~~s~~~~~~gr~~~~niiP~  214 (341)
                        |+++++ ++++||||||||||++++|++|++  .|+++++ .++|+|++||++ ..+|+.+ .+++       |++||
T Consensus       140 Evn~~~i~-~~~iIanPgC~tt~~~l~L~PL~~~g~~~~~~i~~v~t~~g~SGaG~~~~~~~~-~~~~-------n~~py  210 (337)
T 3dr3_A          140 EWCGNKLK-EANLIAVPGCYPTAAQLALKPLIDADLLDLNQWPVINATSGVSGAGRKAAISNS-FCEV-------SLQPY  210 (337)
T ss_dssp             TTCCHHHH-TCSEEECCCHHHHHHHHHHHHHHHTTCBCTTSCCEEEEEECGGGGCSCCCSTTS-GGGC-------SEEEC
T ss_pred             ccCHHHhC-CCCEEecCChHHHHHHHHHHHHHHcCccCCCceEEEEEeeccccCCcccccccc-cccc-------ceEcc
Confidence              888887 589999999999999999999998  6999999 999999999986 4445433 2322       89999


Q ss_pred             cCChhHHHHHHhhhhcC----ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeec
Q 019445          215 STGAAKAVGKVLPALNG----KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVST  289 (341)
Q Consensus       215 ~~g~~~~~~~~lpel~~----~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~  289 (341)
                      ..+.    |||+||+++    +++++|+|||++|||+++++++++++++.+||+++|+++|+ +||++++...+ |.. .
T Consensus       211 ~~~~----h~h~Pei~~~l~~~v~ft~~rvPv~rG~~~ti~~~l~~~~t~eev~~~l~~~Y~~~p~V~v~~~~~-P~~-~  284 (337)
T 3dr3_A          211 GVFT----HRHQPEIATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKGV-PAL-K  284 (337)
T ss_dssp             STTT----CTHHHHHHHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSSSC-CCG-G
T ss_pred             Cccc----ceechhHHhhhcCCEEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHHhCCCCCEEECCCCC-CCH-H
Confidence            9885    789999998    89999999999999999999999999999999999999998 59999986433 432 2


Q ss_pred             ccCCCcceeEEeCCCcceecCCeEEEEEEeCC-CcchhhhHHHHHHHHhh
Q 019445          290 DFVGDSRSSIFDAKAGIALSKNFVKLVSWYDN-EWGYSSRVIDLIVHMAK  338 (341)
Q Consensus       290 d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydn-e~gy~~r~~d~~~~~~~  338 (341)
                      +..|.-+-.|-     ...+++.+.+++..|| -+|=|-+-+-.|+.|-.
T Consensus       285 ~v~gtn~~~ig-----~~~~~~~l~~~~~~DNL~KGAAgqAVQ~~nlm~g  329 (337)
T 3dr3_A          285 NVVGLPFCDIG-----FAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFG  329 (337)
T ss_dssp             GTTTSSCEEEE-----EEEETTEEEEEEEECTTTTTTHHHHHHHHHHHHT
T ss_pred             HhCCCCcEEEE-----EEEeCCEEEEEEEechHHHHHHHHHHHHHHHHhC
Confidence            44444432221     1122567888888999 67888888888887754

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=100.00  E-value=1.1e-43  Score=342.11  Aligned_cols=309  Identities=18%  Similarity=0.192  Sum_probs=223.0

Q ss_pred             CCCC-CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445            1 MAGD-KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (341)
Q Consensus         1 ~~~~-~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~   78 (341)
                      |..| +++||||+|+ ||+|++|+|+|.+||++||+.+.+.+..++.+...+.+. .++.++ ...    . .+      
T Consensus         1 ~~~M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~-~~~~~~-~~~----~-~~------   67 (359)
T 4dpk_A            1 MILMRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQ-TVGQVP-KEI----A-DM------   67 (359)
T ss_dssp             -----CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCC-SSSCCC-HHH----H-TC------
T ss_pred             CCcCCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccc-cccccc-ccc----c-cc------
Confidence            4444 4689999999 999999999999999999999988755555443221100 011111 000    0 11      


Q ss_pred             EEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC--C-----
Q 019445           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP--E-----  148 (341)
Q Consensus        79 i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~--~-----  148 (341)
                       .+ ++.+++.  |  .++|+||+|+|++.+++.+++++++|+++||+|++++   +.|..++++|+++++.  .     
T Consensus        68 -~v-~~~~~~~--~--~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~  141 (359)
T 4dpk_A           68 -EI-KPTDPKL--M--DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRR  141 (359)
T ss_dssp             -BC-EECCGGG--C--TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHH
T ss_pred             -eE-EeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhccccc
Confidence             11 1123332  3  3899999999999999999999999999999999987   4789999999998842  1     


Q ss_pred             ---CcEEeCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCCh-hH---H
Q 019445          149 ---LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA-AK---A  221 (341)
Q Consensus       149 ---~~iIsnp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~-~~---~  221 (341)
                         .++||||||||||++|+|++|+++|||+++.++|+|++||+|+.  +.+      .+.+++|++||.++. .+   |
T Consensus       142 ~~~~~iIanPgC~tt~~~l~L~PL~~~~gi~~v~v~t~~g~SGaG~~--~~~------~~~~~~N~ipy~~~~e~k~~~E  213 (359)
T 4dpk_A          142 EWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYP--GIP------SLDVVDNILPLGDGYDAKTIKE  213 (359)
T ss_dssp             TCSSEEEECCCHHHHHHHHHHHHHHHHSCEEEEEEEEEECSGGGCSS--CSB------GGGTTTCCEECCHHHHHHHHHH
T ss_pred             ccCccEEECCCcHHHHHHHHHHHHHHhcCCcEEEEEEEeccccCCCc--Ccc------ChHHhCCeEeecCcHHHHHHHH
Confidence               36999999999999999999999999999999999999998874  221      246788999999875 33   4


Q ss_pred             HHHHhhhhcC----------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-----------Cccccccc
Q 019445          222 VGKVLPALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-----------GKLKGILG  280 (341)
Q Consensus       222 ~~~~lpel~~----------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-----------~~~~~il~  280 (341)
                      +.++++++.+          +++++|+|||++|||+++++++++++++.+||+++|+++|+           +||++++.
T Consensus       214 i~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~~fV~v~~  293 (359)
T 4dpk_A          214 IFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMN  293 (359)
T ss_dssp             HHHHHHTSCCSCCCSCGGGCEEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEECC
T ss_pred             HHHHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCCCCccEEEcC
Confidence            6777776654          68999999999999999999999999999999999999987           57777765


Q ss_pred             CCCcceeecc--cCCC-cceeEEeCCCcceecCCeEEEEEEeCCC-cchhhhHHHHHHHHhh
Q 019445          281 YTEEDVVSTD--FVGD-SRSSIFDAKAGIALSKNFVKLVSWYDNE-WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       281 ~~~~~~vs~d--~~~~-~~s~~~d~~~~~~~~~~~~k~~~wydne-~gy~~r~~d~~~~~~~  338 (341)
                      -.+.|..-.+  -++. ...+.+- ... ..+++.+.+++=-||= +|=|-.-+-.++.|.+
T Consensus       294 ~~~~P~~~~~~g~~~~~~~~~~Vg-r~r-~~~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~~  353 (359)
T 4dpk_A          294 EDTRPQVYFDRWAGDIPGMSVVVG-RLK-QVNKRMIRLVSLIHNTVRGAAGGGILAAELLVE  353 (359)
T ss_dssp             STTCCCHHHHTTCTTTTTCSEEEE-EEE-EEETTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHhhccCCCcCCeEEEE-EEE-EcCCCEEEEEEEEhhhhHhHHHHHHHHHHHHHH
Confidence            4333432212  1210 1112111 000 0235667888889994 5766666666666644

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=100.00  E-value=1.1e-43  Score=342.11  Aligned_cols=309  Identities=18%  Similarity=0.192  Sum_probs=222.8

Q ss_pred             CCCC-CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445            1 MAGD-KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (341)
Q Consensus         1 ~~~~-~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~   78 (341)
                      |..| +++||||+|+ ||+|++|+|+|.+||++||+.+.+.+..++.+...+.+. .++.++ ...    . .+      
T Consensus         1 ~~~M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~-~~~~~~-~~~----~-~~------   67 (359)
T 4dpl_A            1 MILMRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQ-TVGQVP-KEI----A-DM------   67 (359)
T ss_dssp             -----CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCC-SSSCCC-HHH----H-TC------
T ss_pred             CCcCCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccc-cccccc-ccc----c-cc------
Confidence            4444 4689999999 999999999999999999999988755555443221100 011111 000    0 11      


Q ss_pred             EEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC--C-----
Q 019445           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP--E-----  148 (341)
Q Consensus        79 i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~--~-----  148 (341)
                       .+ ++.+++.  |  .++|+||+|+|++.+++.+++++++|+++||+|++++   +.|..++++|+++++.  .     
T Consensus        68 -~v-~~~~~~~--~--~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~  141 (359)
T 4dpl_A           68 -EI-KPTDPKL--M--DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRR  141 (359)
T ss_dssp             -BC-EECCGGG--C--TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHH
T ss_pred             -eE-EeCCHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhccccc
Confidence             11 1123332  3  3899999999999999999999999999999999987   4789999999998842  1     


Q ss_pred             ---CcEEeCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCCh-hH---H
Q 019445          149 ---LDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGA-AK---A  221 (341)
Q Consensus       149 ---~~iIsnp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~-~~---~  221 (341)
                         .++||||||||||++|+|++|+++|||+++.++|+|++||+|+.  +.+      .+.+++|++||.++. .+   |
T Consensus       142 ~~~~~iIanPgC~tt~~~l~L~PL~~~~gi~~v~v~t~~g~SGaG~~--~~~------~~~~~~N~ipy~~~~e~k~~~E  213 (359)
T 4dpl_A          142 EWKGFIVTTPLCTAQGAAIPLGAIFKDYKMDGAFITTIQSLSGAGYP--GIP------SLDVVDNILPLGDGYDAKTIKE  213 (359)
T ss_dssp             TCSSEEEECCCHHHHHHHHHHHHHHHHSCEEEEEEEEEBCGGGGCSS--CSB------HHHHTTCCEECCHHHHHHHHHH
T ss_pred             ccCccEEECCCcHHHHHHHHHHHHHHhcCCcEEEEEEEeccccCCCc--Ccc------ChHHhCCeEeecCcHHHHHHHH
Confidence               36999999999999999999999999999999999999998774  221      256789999999875 33   4


Q ss_pred             HHHHhhhhcC----------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-----------Cccccccc
Q 019445          222 VGKVLPALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-----------GKLKGILG  280 (341)
Q Consensus       222 ~~~~lpel~~----------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-----------~~~~~il~  280 (341)
                      +.++++++.+          +++++|+|||++|||+++++++++++++.+||+++|+++|+           +||++++.
T Consensus       214 i~kil~~l~g~~~~~~~~~~~v~~t~~rVPv~rG~~~tv~v~l~~~~t~eei~~~l~~~~~~~~~~~l~~~p~~fV~v~~  293 (359)
T 4dpl_A          214 IFRILSEVKRNVDEPKLEDVSLAATTHRIATIHGHYEVLYVSFKEETAAEKVKETLENFRGEPQDLKLPTAPSKPIIVMN  293 (359)
T ss_dssp             HHHHHTTSCCSSCCSCGGGCEEEEECEECSCSSCEEEEEEEEESSCCCHHHHHHHHHTCCCHHHHTTCTTCCSCSEEEEC
T ss_pred             HHHHHhhcccccccccccCCceEEEEEEecccccEEEEEEEEECCCCCHHHHHHHHHHhhcccccccccCCCCccEEEcC
Confidence            6777776654          68999999999999999999999999999999999999987           57777765


Q ss_pred             CCCcceeecc--cCCC-cceeEEeCCCcceecCCeEEEEEEeCCC-cchhhhHHHHHHHHhh
Q 019445          281 YTEEDVVSTD--FVGD-SRSSIFDAKAGIALSKNFVKLVSWYDNE-WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       281 ~~~~~~vs~d--~~~~-~~s~~~d~~~~~~~~~~~~k~~~wydne-~gy~~r~~d~~~~~~~  338 (341)
                      -.+.|..-.+  -++. ...+.+- ... ..+++.+.+++=-||= +|=|-.-+-.++.|.+
T Consensus       294 ~~~~P~~~~~~g~~~~~~~~~~Vg-r~r-~~~~~~l~~~~~~DNL~KGAAg~AVQn~nl~~~  353 (359)
T 4dpl_A          294 EDTRPQVYFDRWAGDIPGMSVVVG-RLK-QVNKRMIRLVSLIHNTVRGAAGGGILAAELLVE  353 (359)
T ss_dssp             STTCCCHHHHTTCTTTTTCSEEEE-EEE-EEETTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHhhccCCCcCCeEEEE-EEE-EcCCCEEEEEEEEhhhhHhHHHHHHHHHHHHHH
Confidence            4333432212  1210 1112111 000 0235667888889994 5766666666666644

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=1.2e-43  Score=340.03  Aligned_cols=239  Identities=17%  Similarity=0.253  Sum_probs=186.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||+|||++|++++|+|.+||++||++|++..  .+..+++++++. ++.+. ..   ... .+ +.+..+.+..  
T Consensus         1 ~ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~--~~~~~~~a~~~g-~~~~~-~~---~~~-~~-~~~~~v~v~~--   69 (340)
T 1b7g_O            1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS--PNYEAFIAHRRG-IRIYV-PQ---QSI-KK-FEESGIPVAG--   69 (340)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSS--CSHHHHHHHHTT-CCEEC-CG---GGH-HH-HHTTTCCCCC--
T ss_pred             CeEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCC--hHHHHHHHHhcC-cceec-Cc---CHH-HH-hccccccccc--
Confidence            47999999999999999999999999999999973  344445544321 00110 00   000 00 0000010000  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCCCcEEeCCCCccceec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLA  163 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~La  163 (341)
                      +++++ +  .++|+||+|||++.+++.++.|+++|+|+|++|++.++  .+++++|+|++++. +.++||||||+||||+
T Consensus        70 ~~e~l-~--~~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~~-~~~iIsnpsCtt~~l~  145 (340)
T 1b7g_O           70 TVEDL-I--KTSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEAL-GKKYIRVVSCNTTALL  145 (340)
T ss_dssp             CHHHH-H--HHCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHHT-TCSEEEECCHHHHHHH
T ss_pred             CHhHh-h--cCCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHHc-CCCCcccCCcHHHHHH
Confidence            11111 1  26899999999999999999999999999999999774  47999999976665 4579999999999999


Q ss_pred             chhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccc----cCChhHHHHHHhhhhcCceeEEEEE
Q 019445          164 PLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS----STGAAKAVGKVLPALNGKLTGMSFR  239 (341)
Q Consensus       164 pllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~----~~g~~~~~~~~lpel~~~l~~~~~r  239 (341)
                      |++|+|+++|||+++.|||+|+++.       + +++   .|.+..|++|+    .++.++++.+++|+++  ++++|+|
T Consensus       146 ~~lk~L~~~~gI~~~~~tt~~~~~~-------~-~~~---~~~~~~niip~~~~i~t~~a~ev~~vlp~l~--l~~~a~r  212 (340)
T 1b7g_O          146 RTICTVNKVSKVEKVRATIVRRAAD-------Q-KEV---KKGPINSLVPDPATVPSHHAKDVNSVIRNLD--IATMAVI  212 (340)
T ss_dssp             HHHHHHHTTSCEEEEEEEEEEESSC-------T-TCC---SCCCSSCCEESSSSSSCTHHHHHHTTSTTCE--EEEEEEE
T ss_pred             HHHHHHHHhCCeEEEEEEEEeccCC-------c-ccc---hHHHHcCCCCCCcCCCCCchhHHHHhCCCCc--EEEEEEE
Confidence            9999999999999999999998753       2 222   35677889977    5788999999999997  9999999


Q ss_pred             eeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          240 VPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       240 VP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                      ||+++||+.+++++++++++.|||+++|++++.
T Consensus       213 VPv~~gh~~~l~v~l~~~~t~eei~~~l~~a~~  245 (340)
T 1b7g_O          213 APTTLMHMHFINITLKDKVEKKDILSVLENTPR  245 (340)
T ss_dssp             ESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTT
T ss_pred             eccCCeEEEEEEEEECCCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999997654

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=1.3e-43  Score=341.87  Aligned_cols=300  Identities=20%  Similarity=0.192  Sum_probs=214.8

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC-CCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND-PFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~-~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      ||+||||+|+ |++|++++|+|.+||++||+++++ ....++      .+++.|+.+. ..       .+..++..+.+ 
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~------~~~~~~~~~~-~~-------~~~~~~~~~~~-   71 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGK------KYKDACYWFQ-DR-------DIPENIKDMVV-   71 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTS------BHHHHSCCCC-SS-------CCCHHHHTCBC-
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccc------cHHHhccccc-cc-------ccccCceeeEE-
Confidence            3589999997 999999999999999999999984 423333      2456666552 10       00000111111 


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCC----------CC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKP----------EL  149 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~----------~~  149 (341)
                      .+.++++  |...++|+||+|||++.+++.++.++++|+++|+.|++++   +.|.+++++|++.|..          ++
T Consensus        72 ~~~~~~~--~~~~~~DvV~~atp~~~~~~~a~~~~~aG~~VId~s~~~R~~~~~~~~vpevn~~~~~~~e~~r~~~~~~~  149 (354)
T 1ys4_A           72 IPTDPKH--EEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDG  149 (354)
T ss_dssp             EESCTTS--GGGTTCCEEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCBCCHHHHGGGGGHHHHHHHHHCCSS
T ss_pred             EeCCHHH--HhcCCCCEEEECCCchHHHHHHHHHHHCCCEEEECCchhcCCCCCCccCcccCHHHhcChhhhhhhcccCC
Confidence            2224444  5323899999999999999999999999999888887765   4789999999887752          34


Q ss_pred             cEEeCCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhh
Q 019445          150 DIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPAL  229 (341)
Q Consensus       150 ~iIsnp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel  229 (341)
                      ++||||||||||++|++++|+++|||+++.++|+|++||+|+.  +.      ..+.+++|++||.++.   .|||+||+
T Consensus       150 ~iIanpgC~tt~~~l~l~pL~~~~gi~~~~v~t~~~~SGaG~~--~~------~~~~~~~ni~py~~~~---~~k~~~Ei  218 (354)
T 1ys4_A          150 AIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYN--GV------PSMAILDNLIPFIKNE---EEKMQTES  218 (354)
T ss_dssp             EEEECCCHHHHHHHHHHHHHHHHHCCSEEEEEEEBCSGGGCTT--TS------CHHHHTTCCBSCCTTH---HHHHHHHH
T ss_pred             eEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcCcCCcc--cc------cchHHhCCEEeccCch---hhHHHHHH
Confidence            6999999999999999999999999999999999999998774  22      1356788999999874   35555555


Q ss_pred             cC---------------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc---------CcccccccCCCcc
Q 019445          230 NG---------------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE---------GKLKGILGYTEED  285 (341)
Q Consensus       230 ~~---------------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~---------~~~~~il~~~~~~  285 (341)
                      ++               +++++++|||++|||++++|++++++++.+||+++|+++|+         +||++++.-...|
T Consensus       219 ~~~l~~~~g~~~~~~~~~v~~~~~rvP~~~G~~~~i~~~l~~~~t~eei~~~~~~~~~~~~~~~~~~~~fv~v~~~~~~p  298 (354)
T 1ys4_A          219 LKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDPLKDLNLPTYAKPIVIREEIDRP  298 (354)
T ss_dssp             HHHTSEEETTEEECCCCEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHCCTTTTSCCTTCCCSEEECCSTTCC
T ss_pred             HHHHhccccccccCCCceEEEEEEEecccceEEEEEEEEECCCCCHHHHHHHHHHhhccccccccCCCCcEEEecCCCCC
Confidence            32               68899999999999999999999999999999999999995         4888887532223


Q ss_pred             eeec--ccCCCcceeEEeCCCcceecC-CeEEEEEEeCCC-cchhhhHHHHHHHH
Q 019445          286 VVST--DFVGDSRSSIFDAKAGIALSK-NFVKLVSWYDNE-WGYSSRVIDLIVHM  336 (341)
Q Consensus       286 ~vs~--d~~~~~~s~~~d~~~~~~~~~-~~~k~~~wydne-~gy~~r~~d~~~~~  336 (341)
                      ..-.  +-++ ...+.+..   ...+. +.+.+++=-||= +|=|-+-+-.|+.|
T Consensus       299 ~~~~~~~~~~-~~~~~vgr---~~~~~~~~~~~~~~~DNl~kGAAg~Avqn~nl~  349 (354)
T 1ys4_A          299 QPRLDRNEGN-GMSIVVGR---IRKDPIFDVKYTALEHNTIRGAAGASVLNAEYF  349 (354)
T ss_dssp             CHHHHTTGGG-GTSEEEEE---EEECSSSSEEEEEEECTTTTTTHHHHHHHHHHH
T ss_pred             CceeecccCC-CceEEEee---EeeCCCCeEEEEEEehhhHHhHHHHHHHHHHHH
Confidence            2211  1111 11222220   01111 236676778985 45555544444444

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=100.00  E-value=2.6e-42  Score=334.07  Aligned_cols=307  Identities=19%  Similarity=0.183  Sum_probs=211.4

Q ss_pred             CCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee-CCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            3 GDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN-DPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         3 ~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~-~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      .|+|+||||+|+ ||+|++++|+|.+||++||+.+. +.+..++.+..      .|+.+.  ..      .+..+.+.+.
T Consensus        16 ~M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~------~~~~~~--~~------~~p~~~~~~~   81 (381)
T 3hsk_A           16 HMSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKD------AASWKQ--TE------TLPETEQDIV   81 (381)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHH------HCCCCC--SS------CCCHHHHTCB
T ss_pred             cCCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHH------hccccc--cc------ccccccccce
Confidence            467799999999 99999999999999999999885 44344443322      221111  00      0000000011


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccC-----------
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYK-----------  146 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~-----------  146 (341)
                       +++.++++ .|  .++|+||+|+|++.+++.+++++++|+++||+|++++   |.|++++++|++.|.           
T Consensus        82 -v~~~~~~~-~~--~~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~fR~~~~vplvv~~vn~~~~~l~E~~r~~~~~  157 (381)
T 3hsk_A           82 -VQECKPEG-NF--LECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVS  157 (381)
T ss_dssp             -CEESSSCT-TG--GGCSEEEECCCHHHHHHHHHHHHHTTCEEEECCSTTTTCTTSCEECTTTCGGGGHHHHHHHHHHHH
T ss_pred             -EEeCchhh-hc--ccCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCcccCCCCCcEEecccCHHHcCCHhhhhhhhcc
Confidence             12223331 24  3899999999999999999999999999999999987   478999999987663           


Q ss_pred             ----CCCcEEeCCCCccceecchhHHHhhhcc-eeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChh--
Q 019445          147 ----PELDIVSNASCTTNCLAPLAKVIHDKFG-IVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA--  219 (341)
Q Consensus       147 ----~~~~iIsnp~C~tt~Lapllk~L~~~fg-i~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~--  219 (341)
                          ++.++||||||||||+++.|++|+++|| |++..++|+|++||+++..    +.   ..+.+++|++||..+..  
T Consensus       158 ~~~i~~~~iIaNPgC~tt~~~laL~PL~~~~glI~~v~v~t~~gvSGAG~~~----~~---~~~~~~~N~~Py~~~~e~k  230 (381)
T 3hsk_A          158 KGGKKPGFIICISNCSTAGLVAPLKPLVEKFGPIDALTTTTLQAISGAGFSP----GV---SGMDILDNIVPYISGEEDK  230 (381)
T ss_dssp             TTCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEEEEBCCCC----------C---CHHHHTTCCBCCCTTHHHH
T ss_pred             cccccCCcEEECCCcHHHHHHHHHHHHHHhcCCceEEEEEEeeccCCCCccC----Cc---chhhhhcChhhcccchHHH
Confidence                2578999999999999999999999999 8999999999999987621    11   12467889999998752  


Q ss_pred             --HHHHHHhhhhcC-------------ceeEEEEEeeeeeEeeEEEEEEeCC--CCCHHHHHHHHHHhhc----------
Q 019445          220 --KAVGKVLPALNG-------------KLTGMSFRVPTVDVSVVDLTVRLEK--EATYEEIKNAIKEESE----------  272 (341)
Q Consensus       220 --~~~~~~lpel~~-------------~l~~~~~rVP~~~g~~~~l~v~l~~--~~~~~ei~~~~~~a~~----------  272 (341)
                        .|+.|+++.+.+             +++++|+|||++|||++++++++++  +++.+|++++|+++|+          
T Consensus       231 ~~~Ei~kiL~~l~~~~~~~~~~~~~~~~v~ft~~rVPv~rG~~~tv~v~l~~~~~~t~eei~~~l~~~y~~~~~~~l~~~  310 (381)
T 3hsk_A          231 LEWETKKILGGVNAEGTEFVPIPESEMKVSAQCNRVPVIDGHTECISLRFANRPAPSVEDVKQCLREYECAASKLGCHSA  310 (381)
T ss_dssp             HHHHHHHHTCEECTTSSSEECCCTTTCEEEEECCBCSCSSCCEEEEEEEESSSSCCCHHHHHHHHHHCBCHHHHTTCTTC
T ss_pred             HHHHHHHHhhhcccccccccccccCCCceEEEEEEeceeccEEEEEEEEeCCCCCCCHHHHHHHHHHhhccccccccccC
Confidence              234555555444             6889999999999999999999999  9999999999999986          


Q ss_pred             -CcccccccCCCcceeecc-cCCCcceeEEeCCCcceec-CCeEEEEEEeCCC-cchhhhHHHHHHHHh
Q 019445          273 -GKLKGILGYTEEDVVSTD-FVGDSRSSIFDAKAGIALS-KNFVKLVSWYDNE-WGYSSRVIDLIVHMA  337 (341)
Q Consensus       273 -~~~~~il~~~~~~~vs~d-~~~~~~s~~~d~~~~~~~~-~~~~k~~~wydne-~gy~~r~~d~~~~~~  337 (341)
                       +||+.++.-.+.|..-.| -..+...+.+- +  +..+ ....+++.--||= +|=|-.-+-.+++|.
T Consensus       311 p~~~V~v~~~~~~P~p~~~~~~~~~~~v~Vg-r--ir~d~~~~~~~~~v~DNl~kGAAg~AVq~aell~  376 (381)
T 3hsk_A          311 PKQTIHVLDQPDRPQPRLDRDRDSGYGVSVG-R--IREDSLLDFKMVVLSHNTIIGAAGAGILIAEILK  376 (381)
T ss_dssp             CSBSEEEECSTTCCCHHHHTTTTTTSSEEEE-E--EEECSSSSEEEEEEECHHHHSHHHHHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCceeecccccCCceEEEE-E--EEeCCCCCeEEEEEeCcHHHhHHHHHHHHHHHHH
Confidence             468777755444433322 11112222111 0  0000 1125666666884 454544454555543

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=4.5e-42  Score=328.65  Aligned_cols=236  Identities=23%  Similarity=0.305  Sum_probs=199.4

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc--cccCcccCceee-ecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNELK-VKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d--s~~g~~~~~~v~-~~~~~~l~i~g~~i~v~   82 (341)
                      |+||||+|+|++|++++|+|.+||++||++|+|.  +.+...++++++  +.||+|. +.+. .+++ .+.+.+      
T Consensus         2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~--~~~~~~~~~~~~g~~~~~~~~-~~v~~~~~~-~~~v~~------   71 (334)
T 2czc_A            2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKT--KPDFEAYRAKELGIPVYAASE-EFIPRFEKE-GFEVAG------   71 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEES--SCSHHHHHHHHTTCCEEESSG-GGHHHHHHH-TCCCSC------
T ss_pred             CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcC--CHHHHHHHHHhcCcccccccc-ccceeccCC-ceEEcC------
Confidence            5899999999999999999999999999999997  356667777776  7888887 4331 1111 111111      


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-C-C-CeeeeccCccccCCCCcEEeCCCCcc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-D-A-PMFVVGVNEKEYKPELDIVSNASCTT  159 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d-~-~~~V~Gvn~~~~~~~~~iIsnp~C~t  159 (341)
                         +++++.|   ++|+||+|||++.+.+.++.++++|+ +|++++|.+ | . |++|||+|+++++ +.++|+||||+|
T Consensus        72 ---d~~~l~~---~vDvV~~aTp~~~h~~~a~~~l~aGk-~Vi~sap~~~d~~~~~~v~~vn~~~~~-~~~ii~~~~C~t  143 (334)
T 2czc_A           72 ---TLNDLLE---KVDIIVDATPGGIGAKNKPLYEKAGV-KAIFQGGEKADVAEVSFVAQANYEAAL-GKNYVRVVSCNT  143 (334)
T ss_dssp             ---BHHHHHT---TCSEEEECCSTTHHHHHHHHHHHHTC-EEEECTTSCGGGSSEEECHHHHGGGGT-TCSEEEECCHHH
T ss_pred             ---cHHHhcc---CCCEEEECCCccccHHHHHHHHHcCC-ceEeecccccccccceEEeccCHHHHh-hCCcEEecCcHH
Confidence               2333322   79999999999999999999999995 477999875 4 4 6999999999998 478999999999


Q ss_pred             ceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccc---cCChhHHHHHHhhhhcCceeEE
Q 019445          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS---STGAAKAVGKVLPALNGKLTGM  236 (341)
Q Consensus       160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~---~~g~~~~~~~~lpel~~~l~~~  236 (341)
                      |||+|++++|++.  |+++.++|+|++|+.           |+++|++++|++|+   .+|+++++.+++| ++  ++++
T Consensus       144 ~~l~P~~~~l~~~--I~~g~i~ti~a~s~~-----------~~~~r~~~~niiP~i~~~~g~~~~i~~~l~-l~--l~~~  207 (334)
T 2czc_A          144 TGLVRTLSAIREY--ADYVYAVMIRRAADP-----------NDTKRGPINAIKPTVEVPSHHGPDVQTVIP-IN--IETM  207 (334)
T ss_dssp             HHHHHHHHHHGGG--EEEEEEEEEEESSCT-----------TCCSCCCSSCCEECCSSSCTHHHHHTTTSC-CC--EEEE
T ss_pred             HHHHHHHHHHHHH--hccccEEEEEEecCc-----------cccccChhhcEEeccCCCCchhhhhheEEE-EE--EEEE
Confidence            9999999999987  999999999999874           35678899999999   8899999999999 76  9999


Q ss_pred             EEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcc
Q 019445          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL  275 (341)
Q Consensus       237 ~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~  275 (341)
                      ++|||+++||+.+++++++++++.+|++++|+++++..+
T Consensus       208 ~~rVPv~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~l  246 (334)
T 2czc_A          208 AFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLL  246 (334)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTTEEE
T ss_pred             EEEcCCCceEEEEEEEEECCCCCHHHHHHHHHhccCCEe
Confidence            999999999999999999999999999999999887433

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=100.00  E-value=1.8e-41  Score=325.86  Aligned_cols=290  Identities=11%  Similarity=0.074  Sum_probs=215.4

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCC-----CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRD-----DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p-----~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~   78 (341)
                      +|+||+|+|+ |++|++++|+|.+||     ++|++++++.+..++      .+++.|++|. +..      .+.     
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk------~~~~~~~~l~-~~~------~~~-----   69 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGS------TLGEHHPHLT-PLA------HRV-----   69 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTS------BGGGTCTTCG-GGT------TCB-----
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCC------chhhhccccc-ccc------eee-----
Confidence            4589999998 999999999999999     999999987633333      2466777775 210      111     


Q ss_pred             EEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CCCe-------------eeecc----
Q 019445           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPM-------------FVVGV----  140 (341)
Q Consensus        79 i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~~~-------------~V~Gv----  140 (341)
                        + .+.+++  .|.  ++|+||+|+|++.+++.++.+ ++|+++||+|++++ +.+.             ++||+    
T Consensus        70 --~-~~~~~~--~~~--~~DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~R~~~~~~~~~~y~~~h~~~~vyglPEv~  141 (352)
T 2nqt_A           70 --V-EPTEAA--VLG--GHDAVFLALPHGHSAVLAQQL-SPETLIIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELP  141 (352)
T ss_dssp             --C-EECCHH--HHT--TCSEEEECCTTSCCHHHHHHS-CTTSEEEECSSTTTCSCHHHHHHHHSSCCCCCCCBSCTTST
T ss_pred             --e-ccCCHH--Hhc--CCCEEEECCCCcchHHHHHHH-hCCCEEEEECCCccCCcchhhhhhccccCCCCeeEEecccc
Confidence              1 111222  253  899999999999999999999 99999999999987 3333             47888    


Q ss_pred             -CccccCCCCcEEeCCCCccceecchhHHHhhhccee-EEEEEEEeeccCc-ceeeeCCCCCCcccccccccccccccCC
Q 019445          141 -NEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV-EGLMTTVHSITAT-QKTVDGPSMKDWRGGRAASFNIIPSSTG  217 (341)
Q Consensus       141 -n~~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~-~~~ittv~a~s~~-~~~~d~~s~~~~~~gr~~~~niiP~~~g  217 (341)
                       |+++|+ ++++||||||||||+++.|++|+++++|+ +..++|+|++||+ +..+|+.+ .+++.++..+.|+.|.   
T Consensus       142 ~n~~~i~-~~~iIanPgC~tt~~~lal~PL~~~~~i~~~i~v~t~~g~SGaG~~~~~~~~-~~~~~~~~~ay~~~~~---  216 (352)
T 2nqt_A          142 GARDQLR-GTRRIAVPGCYPTAALLALFPALAADLIEPAVTVVAVSGTSGAGRAATTDLL-GAEVIGSARAYNIAGV---  216 (352)
T ss_dssp             THHHHHT-TCSEEECCCHHHHHHHHHHHHHHHTTCSCSEEEEEEEECGGGGCSSCCGGGS-HHHHTTCCEECSTTTT---
T ss_pred             cCHHHHh-cCCEEEcCCHHHHHHHHHHHHHHHcCCCcceEEEEEEeccccCCcccccccc-HHHHhhhcccccCCCc---
Confidence             888998 68999999999999999999999999998 8999999999998 45555432 3555555455555541   


Q ss_pred             hhHHHHHHhhhh----------cCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcce
Q 019445          218 AAKAVGKVLPAL----------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDV  286 (341)
Q Consensus       218 ~~~~~~~~lpel----------~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~  286 (341)
                           |+|+||+          +.+++++|+|||++|||++++|++++++  .+||+++|+++|+ +||++++...+-|.
T Consensus       217 -----h~h~pEi~~e~~ki~~~~~~v~ft~~rvP~~rG~~~ti~~~l~~~--~~ei~~~~~~~y~~~~~V~v~~~~~~p~  289 (352)
T 2nqt_A          217 -----HRHTPEIAQGLRAVTDRDVSVSFTPVLIPASRGILATCTARTRSP--LSQLRAAYEKAYHAEPFIYLMPEGQLPR  289 (352)
T ss_dssp             -----STTHHHHHHHHHTTCSSCCEEEEEEEECSCSSCEEEEEEEECCSC--HHHHHHHHHHHHTTCTTEEECCTTCCCC
T ss_pred             -----ceecHHHHHHHHHHhCCCCCEEEEEEEEccccEEEEEEEEEECCC--HHHHHHHHHHhhCCCCCEEEeCCCCCcC
Confidence                 3566666          3468999999999999999999999987  8999999999998 69999986332232


Q ss_pred             eecccCCCcceeEEeCCCccee--cCCeEEEEEEeCCC-cchhhhHHHHHHHHhh
Q 019445          287 VSTDFVGDSRSSIFDAKAGIAL--SKNFVKLVSWYDNE-WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       287 vs~d~~~~~~s~~~d~~~~~~~--~~~~~k~~~wydne-~gy~~r~~d~~~~~~~  338 (341)
                      .- +..|.-+-.|   +  ...  .++.+.+++=-||= +|=|-+-+-.++.|-.
T Consensus       290 ~~-~v~g~n~~~i---g--~~~d~~~~~l~~~~~~DNL~KGAAg~AVQ~~nl~~g  338 (352)
T 2nqt_A          290 TG-AVIGSNAAHI---A--VAVDEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALG  338 (352)
T ss_dssp             GG-GTTTSSCEEE---E--EEEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHHT
T ss_pred             hH-HhcCCcEEEE---E--EEEeCCCCEEEEEEEEcchhHhHHHHHHHHHHHHhC
Confidence            11 3344332222   1  111  23566777778995 5666666666666644

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=100.00  E-value=5.1e-42  Score=331.46  Aligned_cols=242  Identities=16%  Similarity=0.185  Sum_probs=187.3

Q ss_pred             eeEEEEcc-CHHHHHHHH-HHHcCC--CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF-GRIGRLVAR-VALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr-~l~~~p--~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +||||+|+ ||+|++++| +|.+|+  .+++..+.+.              | +|+-. .        .  ++|+.+.+.
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~--------------s-~G~~v-~--------~--~~g~~i~~~   55 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS--------------Q-LGQAA-P--------S--FGGTTGTLQ   55 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS--------------S-TTSBC-C--------G--GGTCCCBCE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC--------------C-CCCCc-c--------c--cCCCceEEE
Confidence            69999997 999999999 777774  4666666543              2 22210 0        0  112223333


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-----CCCeeeeccCccccCCC---C-cEEe
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-----DAPMFVVGVNEKEYKPE---L-DIVS  153 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-----d~~~~V~Gvn~~~~~~~---~-~iIs  153 (341)
                      ...++++  |+  ++|+||+|||++.++++++.++++|+|+++||++++     +.|++|+++|+++++..   . ++||
T Consensus        56 ~~~~~~~--~~--~~DvVf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~~~~~g~~~Ia  131 (367)
T 1t4b_A           56 DAFDLEA--LK--ALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFV  131 (367)
T ss_dssp             ETTCHHH--HH--TCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             ecCChHH--hc--CCCEEEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhhhhhcCCCEEE
Confidence            2222332  64  899999999999999999999999996666666654     47899999999988731   1 7999


Q ss_pred             CCCCccceecchhHHHhhhcceeEEEEEEEeeccCccee-------------------eeCCCCC--Cc-----------
Q 019445          154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-------------------VDGPSMK--DW-----------  201 (341)
Q Consensus       154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~-------------------~d~~s~~--~~-----------  201 (341)
                      ||||||||++|++++|+++|+|+++.++|+|++||+++-                   .|+++..  ++           
T Consensus       132 np~Cttt~~~~al~pL~~~~~I~~~~vtt~~a~SGaG~~~~~el~~~~~~l~~~~~~~~~~~~~~ild~~r~~~~~~~~~  211 (367)
T 1t4b_A          132 GGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSG  211 (367)
T ss_dssp             ECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHT
T ss_pred             eCCHHHHHHHHHHHHHHHcCCCcEEEEEEEeccccccccchHHHHHHHhhhhccccccccccccchhhhhhccccccccc
Confidence            999999999999999999999999999999999998531                   2334310  23           


Q ss_pred             -----ccccccccccccccCC------------hhHHHHHHhhh-hcCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHH
Q 019445          202 -----RGGRAASFNIIPSSTG------------AAKAVGKVLPA-LNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEI  263 (341)
Q Consensus       202 -----~~gr~~~~niiP~~~g------------~~~~~~~~lpe-l~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei  263 (341)
                           .+++.+++|++|+.++            ..+++.+++|+ ...+++++|+|||++|||++++|++++++++.+||
T Consensus       212 ~~~~~~f~~~~a~NiiP~~~~~~~~~~t~EE~k~~~e~~kil~~~~~~~v~~t~vrVPv~~g~~~~v~v~l~~~~t~eei  291 (367)
T 1t4b_A          212 ELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTV  291 (367)
T ss_dssp             CSCCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHHH
T ss_pred             cCcccccchhhhCceEEEecCccccCccHHHHHHHHHHHHHhCcCCCceEEEEEEEcCccceEEEEEEEEECCCCCHHHH
Confidence                 2368899999999987            56677888854 34479999999999999999999999999999999


Q ss_pred             HHHHHHhhcCccccccc
Q 019445          264 KNAIKEESEGKLKGILG  280 (341)
Q Consensus       264 ~~~~~~a~~~~~~~il~  280 (341)
                      +++|+++  .||+.++.
T Consensus       292 ~~~l~~~--~~~V~v~~  306 (367)
T 1t4b_A          292 EELLAAH--NPWAKVVP  306 (367)
T ss_dssp             HHHHHHH--CTTCCBCC
T ss_pred             HHHHHhc--CCCEEEec
Confidence            9999988  47888875

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=100.00  E-value=1.4e-40  Score=320.36  Aligned_cols=297  Identities=14%  Similarity=0.173  Sum_probs=215.3

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      ++||||+|+ ||+|++|+|+|.+|  |.+|++.+.+.+..++                          .+.+.++.+.+ 
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~--------------------------~~~~~~~~~~~-   54 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK--------------------------SLKFKDQDITI-   54 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTC--------------------------EEEETTEEEEE-
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCC--------------------------cceecCCCceE-
Confidence            589999999 99999999999998  8899999987633322                          12233333332 


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCCCcEEeCCCCcc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPELDIVSNASCTT  159 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~~~iIsnp~C~t  159 (341)
                      ++.+++.  |  .++|+||+|||++.+++.+++++++|+++||+|++++   +.|.++||+|++.|+...++||||||||
T Consensus        55 ~~~~~~~--~--~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpevN~~~i~~~~~iIanpgC~t  130 (366)
T 3pwk_A           55 EETTETA--F--EGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNCST  130 (366)
T ss_dssp             EECCTTT--T--TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGTTCCSEEECCCHHH
T ss_pred             eeCCHHH--h--cCCCEEEECCChHhHHHHHHHHHHCCCEEEEcCCccccCCCceEEEccCCHHHHcCCCCeEECCCcHH
Confidence            3334333  3  4899999999999999999999999999999999986   4789999999999984489999999999


Q ss_pred             ceecchhHHHhhhcceeEEEEEEEeeccCcce-e-----------eeC------CCCCCc-----ccccccccccccccC
Q 019445          160 NCLAPLAKVIHDKFGIVEGLMTTVHSITATQK-T-----------VDG------PSMKDW-----RGGRAASFNIIPSST  216 (341)
Q Consensus       160 t~Lapllk~L~~~fgi~~~~ittv~a~s~~~~-~-----------~d~------~s~~~~-----~~gr~~~~niiP~~~  216 (341)
                      ||++|++++|+++|+|+++.++|+|++||.++ .           +++      ...+..     ++-+.+++|++|+..
T Consensus       131 t~~~l~l~pL~~~~~i~~i~v~t~~~vSGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~y~~~~~HrH~~ia~NviP~I~  210 (366)
T 3pwk_A          131 IQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQID  210 (366)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBCCSS
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEEEEeccccCcchhhHHHHHHHHHhcccccccccCcccCCcccccccchhhccccceec
Confidence            99999999999999999999999999999754 1           111      000111     111678999999973


Q ss_pred             -----ChhHHHHHHhhhhc-------CceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCc
Q 019445          217 -----GAAKAVGKVLPALN-------GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEE  284 (341)
Q Consensus       217 -----g~~~~~~~~lpel~-------~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~  284 (341)
                           |.++|+.|+..|..       -+++++|+|||++|||+.++|++++++++.+|++++|+++   ||+.++..+++
T Consensus       211 ~~~~~g~t~EE~k~~~E~~kil~~~~~~v~ftp~rVPv~rG~~~tv~v~l~~~~s~eei~~~l~~~---~~V~v~~~~~~  287 (366)
T 3pwk_A          211 VFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAF---PGAVLEDDVAH  287 (366)
T ss_dssp             CBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHHS---TTEEECCBGGG
T ss_pred             ccccCCCcHHHHHHHHHHHHHhcCCCCCeEEEEEEechhccEEEEEEEEECCCCCHHHHHHHHHhC---CCcEEecCccc
Confidence                 55677666555432       3589999999999999999999999999999999999986   67777653311


Q ss_pred             ---ceeecccCCCcceeEEeCCCcceecCCeEEEEEEeCCC-cchhhhHHHHHHHHhh
Q 019445          285 ---DVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNE-WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       285 ---~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~~wydne-~gy~~r~~d~~~~~~~  338 (341)
                         |..- +..|.-+-.|-=.... ...++.+.+++=-||= +|=|-+-+-.|+.|-+
T Consensus       288 ~~~P~~~-~v~gtn~~~Vgr~r~d-~~~~~~l~~~~~~DNL~KGAAg~AVQn~nlm~~  343 (366)
T 3pwk_A          288 QIYPQAI-NAVGSRDTFVGRIRKD-LDAEKGIHMWVVSDNLLKGAAWNSVQIAETLHE  343 (366)
T ss_dssp             TBCCCHH-HHTTCSSEEEEEEEEC-SSCTTEEEEEEEECTTTTTTHHHHHHHHHHHHH
T ss_pred             CCCCchh-HcCCCCEEEEEEEEec-CCCCCEEEEEEEEccHHHhHHHHHHHHHHHHHH
Confidence               1111 2233322211000000 0123556777778995 5666666656665543

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=100.00  E-value=3.2e-39  Score=308.74  Aligned_cols=293  Identities=18%  Similarity=0.239  Sum_probs=211.1

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            7 IKIGINGF-GRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +||||+|+ ||+|++++|+|.+|  |.+|++.+.+.+..++                          .+.+.|+.+.+ +
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~--------------------------~~~~~~~~~~~-~   54 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGR--------------------------KLAFRGQEIEV-E   54 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSC--------------------------EEEETTEEEEE-E
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCC--------------------------ceeecCCceEE-E
Confidence            69999999 99999999999998  8899999987633332                          22233433333 3


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCc-cccCCC-CcEEeCCCCc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNE-KEYKPE-LDIVSNASCT  158 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~-~~~~~~-~~iIsnp~C~  158 (341)
                      +.+++.  |  .++|+||+|+|++.+++.+++++++|+++||+|++++   |.|.++|++|+ +.|+.. .++|||||||
T Consensus        55 ~~~~~~--~--~~~Dvvf~a~~~~~s~~~a~~~~~~G~~vID~Sa~~R~~~~~p~~vpevN~~~~i~~~~~~iIanpgC~  130 (344)
T 3tz6_A           55 DAETAD--P--SGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRRPKGIIANPNCT  130 (344)
T ss_dssp             ETTTSC--C--TTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTSHHHHTTCCTTSEEECCCHH
T ss_pred             eCCHHH--h--ccCCEEEECCChHHHHHHHHHHHhCCCEEEECCCccccCCCccEEEccCCCHHHhhhcCCCEEECCCcH
Confidence            333333  3  4899999999999999999999999999999999985   47999999999 999742 5899999999


Q ss_pred             cceecchhHHHhhhcceeEEEEEEEeeccCccee--------------------eeCCCC---CCccccccccccccccc
Q 019445          159 TNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT--------------------VDGPSM---KDWRGGRAASFNIIPSS  215 (341)
Q Consensus       159 tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~--------------------~d~~s~---~~~~~gr~~~~niiP~~  215 (341)
                      |||++|++++|+++|+|+++.++|+|++||.++-                    +++...   ....++...+.|++|+.
T Consensus       131 tt~~~l~l~pL~~~~~i~~i~v~t~~~~SGAG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aynv~p~i  210 (344)
T 3tz6_A          131 TMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAVIGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLA  210 (344)
T ss_dssp             HHHHHHHHHHHHHHHCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHGGGGGGGGTCTTSSCCCCCSSSSSCCTTCCBCCC
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEeccCCCccChhhhHHHHHHHHhhhccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999997531                    222210   11244566788999974


Q ss_pred             C-----Ch--hHHHHHHhhhhc-------CceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccC
Q 019445          216 T-----GA--AKAVGKVLPALN-------GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGY  281 (341)
Q Consensus       216 ~-----g~--~~~~~~~lpel~-------~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~  281 (341)
                      .     |.  .+|+.|+.-|++       -+++++|+|||++|||+.++|++++++++.+|++++|++   .||++++.|
T Consensus       211 ~~~~~~ghrHt~EE~k~~~e~~kilg~~~~~v~ft~vrvPv~rGh~~tv~v~l~~~~s~eei~~~l~~---~p~V~v~~~  287 (344)
T 3tz6_A          211 GSLVDDGSGETDEDQKLRFESRKILGIPDLLVSGTCVRVPVFTGHSLSINAEFAQPLSPERARELLDG---ATGVQLVDV  287 (344)
T ss_dssp             SCBCSSSSCCBHHHHHHHHHHHHHHTCTTCEEEEECCBCSCSSCEEEEEEEEESSCCCHHHHHHHHHH---CTTEEECSS
T ss_pred             cccccCCCcCCHHHHHHHHHHHHhcCCCCCceEEEEEEeceeceEEEEEEEEECCCCCHHHHHHHHhc---CCCeEEECC
Confidence            2     32  344322222221       258999999999999999999999999999999999984   589888874


Q ss_pred             CCcceeecccCCCcceeEEeCCCccee-cCCeEEEEEEeCCC-cchhhhHHHHHHHHh
Q 019445          282 TEEDVVSTDFVGDSRSSIFDAKAGIAL-SKNFVKLVSWYDNE-WGYSSRVIDLIVHMA  337 (341)
Q Consensus       282 ~~~~~vs~d~~~~~~s~~~d~~~~~~~-~~~~~k~~~wydne-~gy~~r~~d~~~~~~  337 (341)
                      +. |.   +..|.-+-.|-=....... +++.+.+++=-||= +|=|-.-+-.|+.|.
T Consensus       288 P~-p~---~v~gtn~~~Vgrir~d~~~~~~~~l~~~~~~DNL~KGAAg~AVQ~anll~  341 (344)
T 3tz6_A          288 PT-PL---AAAGVDESLVGRIRRDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELLT  341 (344)
T ss_dssp             CC-HH---HHTTCSSEEEEEEEECTTSGGGCEEEEEEEECTTTTTTHHHHHHHHHHHT
T ss_pred             CC-hH---HhCCCceEEEEEEEecCCCCCCCEEEEEEEEcchhHhHHHHHHHHHHHHH
Confidence            43 21   2233222211100000000 12357777778994 676666666666553

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=100.00  E-value=1.1e-38  Score=305.10  Aligned_cols=287  Identities=15%  Similarity=0.147  Sum_probs=209.8

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .|+||||+|+ ||+|++++|+|.+||++||+.+++.+..++.      +++.|+.|. .        .+.        +.
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~------~~~~~p~~~-~--------~l~--------~~   68 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKK------LEEIFPSTL-E--------NSI--------LS   68 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSB------HHHHCGGGC-C--------CCB--------CB
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCC------hHHhChhhc-c--------Cce--------EE
Confidence            3699999999 9999999999999999999999987555543      445666553 1        111        11


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CC--------------Cee---eecc---Cc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DA--------------PMF---VVGV---NE  142 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~--------------~~~---V~Gv---n~  142 (341)
                      +.+++++ |  .++|+||+|+|++.++++++++  +|+++||+|++++ +.              |.+   +||+   |+
T Consensus        69 ~~~~~~~-~--~~~Dvvf~alp~~~s~~~~~~~--~g~~VIDlSsdfRl~~~~~y~~~y~~~h~~p~~~~~~yglPE~n~  143 (351)
T 1vkn_A           69 EFDPEKV-S--KNCDVLFTALPAGASYDLVREL--KGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHR  143 (351)
T ss_dssp             CCCHHHH-H--HHCSEEEECCSTTHHHHHHTTC--CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHH
T ss_pred             eCCHHHh-h--cCCCEEEECCCcHHHHHHHHHh--CCCEEEECChhhhCCchhhhhhhcCCCCCchhhcCCceECCccCH
Confidence            1122222 2  3799999999999999999988  8999999999987 22              333   8888   68


Q ss_pred             cccCCCCcEEeCCCCccceecchhHHHhhhccee--EEEEEEEeeccCccee-eeCCCCCCcccccccccccccccCChh
Q 019445          143 KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV--EGLMTTVHSITATQKT-VDGPSMKDWRGGRAASFNIIPSSTGAA  219 (341)
Q Consensus       143 ~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~--~~~ittv~a~s~~~~~-~d~~s~~~~~~gr~~~~niiP~~~g~~  219 (341)
                      ++++ .+++|||||||||++++.|++|+++++|+  +..++|++++||.++- .+.     .. ...+..|++||..+. 
T Consensus       144 e~i~-~a~iIANPgC~~t~~~laL~PL~~~~~i~~~~iiv~t~sgvSGAG~~~~~~-----~~-~~e~~~n~~~y~~~~-  215 (351)
T 1vkn_A          144 EEIK-NAQVVGNPGCYPTSVILALAPALKHNLVDPETILVDAKSGVSGAGRKEKVD-----YL-FSEVNESLRPYNVAK-  215 (351)
T ss_dssp             HHHT-TCSEEECCCHHHHHHHHHHHHHHHTTCSCCSEEEEEEEEEGGGGCSCCSGG-----GB-HHHHTTCCEECSCSC-
T ss_pred             HHhc-cCCEEeCCChHHHHHHHHHHHHHHcCCCCCCEEEEEEEeeccccCcccccc-----cc-hhHHhcccccCCccc-
Confidence            8888 58999999999999999999999999998  9999999999998661 111     11 124457888998764 


Q ss_pred             HHHHHHhhhhc----------CceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceee
Q 019445          220 KAVGKVLPALN----------GKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVS  288 (341)
Q Consensus       220 ~~~~~~lpel~----------~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs  288 (341)
                         |||+||+.          -+++++|+|||++|||+.++|++++  ++.+|++++|+++|+ +||++++...+-|..-
T Consensus       216 ---h~h~pEi~~el~~i~~~~~~v~ftp~rvPv~rG~~~tv~v~l~--~~~eei~~~l~~~Y~~~pfV~v~~~~~~P~~~  290 (351)
T 1vkn_A          216 ---HRHVPEMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFYKNEPFVHVLPMGIYPSTK  290 (351)
T ss_dssp             ---CTHHHHHHHHHHHHHTSCCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHHTTCTTEEECCTTCCCCGG
T ss_pred             ---cccHHHHHHHHHHhhCCCCCEEEEEEEeccccEEEEEEEEEEc--CCHHHHHHHHHHhhCCCCCEEEeCCCCCcChH
Confidence               33444432          2588999999999999999999998  899999999999998 6999998633233222


Q ss_pred             cccCCCcceeEEeCCCccee--cCCeEEEEEEeCCC-cchhhhHHHHHHHHhh
Q 019445          289 TDFVGDSRSSIFDAKAGIAL--SKNFVKLVSWYDNE-WGYSSRVIDLIVHMAK  338 (341)
Q Consensus       289 ~d~~~~~~s~~~d~~~~~~~--~~~~~k~~~wydne-~gy~~r~~d~~~~~~~  338 (341)
                       +..|.-+-.|   +  ...  ..+.+.+++=-||= .|=|-+-+-.|+.|-.
T Consensus       291 -~v~gtn~~~I---g--~~~d~~~~~l~~~s~~DNL~KGAAgqAVQn~nlm~G  337 (351)
T 1vkn_A          291 -WCYGSNHVFI---G--MQMEERTNTLILMSAIDNLVKGASGQAVQNMNIMFG  337 (351)
T ss_dssp             -GGTTSSCEEE---E--EEEETTTTEEEEEEEECTTTTTTHHHHHHHHHHHTT
T ss_pred             -HhcCCceEEE---E--EEEcCCCCEEEEEEEcccHHHhHHHHHHHHHHHHhC
Confidence             2233322222   1  111  12445555558995 4666666666666644

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=100.00  E-value=1.5e-39  Score=313.54  Aligned_cols=295  Identities=16%  Similarity=0.153  Sum_probs=203.7

Q ss_pred             eeEEEEcc-CHHHHHHHH-HHHcCC--CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF-GRIGRLVAR-VALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr-~l~~~p--~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +||||+|+ ||+|++|+| +|.+||  .++++.+.+.+ .++.+.          .|.               |..+.+.
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~----------~~~---------------~~~~~~~   54 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAP----------NFG---------------KDAGMLH   54 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCC----------CSS---------------SCCCBCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHH----------HhC---------------CCceEEE
Confidence            48999999 999999999 999998  68999988763 332110          121               1111111


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC--CCC---CCCeeeeccCccccCCC----CcEEe
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA--PSK---DAPMFVVGVNEKEYKPE----LDIVS  153 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa--~~~---d~~~~V~Gvn~~~~~~~----~~iIs  153 (341)
                      ...+++.  |  .++|+||+|+|++.+++++++|+++|+|+++||+  +++   |.|.++||+|+++++..    .++||
T Consensus        55 ~~~~~~~--~--~~~Dvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ia  130 (370)
T 3pzr_A           55 DAFDIES--L--KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFV  130 (370)
T ss_dssp             ETTCHHH--H--TTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             ecCChhH--h--ccCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhhcCCcEEE
Confidence            1111221  3  4899999999999999999999999985444454  444   46899999999888631    25699


Q ss_pred             CCCCccceecchhHHHhhhcceeEEEEEEEeeccCcceee---------------------------e----------CC
Q 019445          154 NASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTV---------------------------D----------GP  196 (341)
Q Consensus       154 np~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~---------------------------d----------~~  196 (341)
                      ||||||||++|+|++|+++|+|+++.++|+|++||.++-.                           |          +.
T Consensus       131 np~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~~~~~~~~~l~~p~~~ild~~~~~~~~~~~~  210 (370)
T 3pzr_A          131 GGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSG  210 (370)
T ss_dssp             ECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHST
T ss_pred             cCChHHHHHHHHHHHHHHhCCCcEEEEEeEEeccccChhhHHHHHHHHHHhhcccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999975310                           0          11


Q ss_pred             CCCCcccccccccccccccC-----ChhHHHHHHhhhh---------cCceeEEEEEeeeeeEeeEEEEEEeCCCCCHHH
Q 019445          197 SMKDWRGGRAASFNIIPSST-----GAAKAVGKVLPAL---------NGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEE  262 (341)
Q Consensus       197 s~~~~~~gr~~~~niiP~~~-----g~~~~~~~~lpel---------~~~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~e  262 (341)
                      +.....+++.+++|++|+..     |.++++.++.-|+         .-+++++|+|||++|||+.++|++++++++.+|
T Consensus       211 ~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~i~V~~t~vrVPv~rGh~~tv~v~~~~~~~~~e  290 (370)
T 3pzr_A          211 SFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDE  290 (370)
T ss_dssp             TSCCTTTSSCCTTSEESCCSCBCTTSCBHHHHHHHHHHHHHTTCTTSCCCEECCCCEESCSSEEEEEEEEEESSCCCHHH
T ss_pred             ccccccccccccCceeeeccccccCCCCHHHHHHHHHHHHHhCccCCCceEEEEeEEecccceEEEEEEEEeCCCCCHHH
Confidence            11123456678899999974     3344443333222         125889999999999999999999999999999


Q ss_pred             HHHHHHHhhcCcccccccCCC-----cceeecccCCCcceeEEeCCCccee---cCCeEEEEEEeCC-CcchhhhHHHHH
Q 019445          263 IKNAIKEESEGKLKGILGYTE-----EDVVSTDFVGDSRSSIFDAKAGIAL---SKNFVKLVSWYDN-EWGYSSRVIDLI  333 (341)
Q Consensus       263 i~~~~~~a~~~~~~~il~~~~-----~~~vs~d~~~~~~s~~~d~~~~~~~---~~~~~k~~~wydn-e~gy~~r~~d~~  333 (341)
                      ++++|+++  .||++++.-..     -|.. .+..|.- .+-+-  - +..   .++.+.+++==|| -||=|-+.+-.|
T Consensus       291 i~~~l~~~--~p~V~v~~~~~~~~~~~P~p-~~v~G~n-~v~VG--r-ir~d~~~~~~l~~~~v~DNL~KGAAgqAvQn~  363 (370)
T 3pzr_A          291 IEEMIATH--NDWVKVIPNERDITARELTP-AKVTGTL-SVPVG--R-LRKMAMGDDFLNAFTVGDQLLWGAAEPLRRTL  363 (370)
T ss_dssp             HHHHHHTS--CSSEEECCSCHHHHHHHSSH-HHHTTSC-CEEEE--E-EEEETTEEEEEEEEEEEETTTTTTHHHHHHHH
T ss_pred             HHHHHHhC--CCCEEEecCCcccccCCCCH-HHhcCCc-cEEEE--E-EEECCCCCCEEEEEEEehhhhHhHHHHHHHHH
Confidence            99999987  58888875321     1110 1223322 22111  0 011   1233445555788 468777777777


Q ss_pred             HHHhh
Q 019445          334 VHMAK  338 (341)
Q Consensus       334 ~~~~~  338 (341)
                      +.|..
T Consensus       364 Nl~~~  368 (370)
T 3pzr_A          364 RIILA  368 (370)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77654

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=100.00  E-value=9.2e-39  Score=308.64  Aligned_cols=295  Identities=14%  Similarity=0.182  Sum_probs=204.9

Q ss_pred             ceeEEEEcc-CHHHHHHHH-HHHcCC--CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVAR-VALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr-~l~~~p--~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      ++||||+|+ ||+|++|+| +|.+||  .++++.+.+. ..++.+.          .|.               |+.+.+
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~----------~~~---------------~~~~~v   57 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAP----------SFA---------------KNETTL   57 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCC----------TTC---------------CSCCBC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHH----------HcC---------------CCceEE
Confidence            579999999 999999999 999998  6899888775 3332110          121               111111


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc--EEEecCCCC---CCCeeeeccCccccCCC--C--cEE
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAPSK---DAPMFVVGVNEKEYKPE--L--DIV  152 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k--~V~lSa~~~---d~~~~V~Gvn~~~~~~~--~--~iI  152 (341)
                      ....+++  .|  .++|+||+|+|++.+++++++++++|+|  +|++|++++   |.|.++||+|+++++..  .  ++|
T Consensus        58 ~~~~~~~--~~--~~vDvvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~I  133 (377)
T 3uw3_A           58 KDATSID--DL--KKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKDALVNGTKNF  133 (377)
T ss_dssp             EETTCHH--HH--HTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEE
T ss_pred             EeCCChh--Hh--cCCCEEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhhhhhcCCcEE
Confidence            1110121  23  3899999999999999999999999984  445555544   36899999999888631  2  469


Q ss_pred             eCCCCccceecchhHHHhhhcceeEEEEEEEeeccCccee------------ee-------------------------C
Q 019445          153 SNASCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VD-------------------------G  195 (341)
Q Consensus       153 snp~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~------------~d-------------------------~  195 (341)
                      |||||||||++|+|++|+++|+|+++.++|+|++||.++-            .+                         +
T Consensus       134 anp~C~tt~~~l~L~pL~~~~~I~~i~v~t~~avSGAG~~~~~el~~q~~~l~~~~~~~~~~p~~~ild~~~~~~~~~~~  213 (377)
T 3uw3_A          134 IGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLAQMGTLNGAVAAQLADPASAILDIDRRVLAAMNG  213 (377)
T ss_dssp             EECCHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHTTHHHHTCTTSCHHHHHHHHHHHHHS
T ss_pred             EcCCHHHHHHHHHHHHHHHhCCCCEEEEeeeecccccchhhHHHHHHHHHHhhccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999997531            11                         1


Q ss_pred             CCCCCcccccccccccccccC-----ChhHHH-------HHHhhhh------cCceeEEEEEeeeeeEeeEEEEEEeCCC
Q 019445          196 PSMKDWRGGRAASFNIIPSST-----GAAKAV-------GKVLPAL------NGKLTGMSFRVPTVDVSVVDLTVRLEKE  257 (341)
Q Consensus       196 ~s~~~~~~gr~~~~niiP~~~-----g~~~~~-------~~~lpel------~~~l~~~~~rVP~~~g~~~~l~v~l~~~  257 (341)
                      .+.....+++.+++|++|+..     |.++++       .|++..+      .-+++++|+|||++|||+.++|++++++
T Consensus       214 ~~~~~~~f~~~ia~N~~P~i~~~~~~g~t~EE~ki~~E~~kilg~~~~~~~~~i~Vs~t~vrVPv~rGh~~tv~v~~~~~  293 (377)
T 3uw3_A          214 DAMPTSQFGVPLAGSLIPWIDKDLGNGMSREEWKGGAETNKILGKPAMGEPGSVPVDGLCVRIGAMRCHSQALTIKLKKD  293 (377)
T ss_dssp             TTSCCTTTSSCCTBSCBSCCSCBCSSSCBHHHHHHHHHHHHHHTCCCTTSTTCCCEEEECCBCSBSSEEEEEEEEEESSC
T ss_pred             cccccccccccccCceEEeecccccCCCCHHHHHHHHHHHHHhcccccccCCCceEEEEeEEecccceEEEEEEEEeCCC
Confidence            111123456778999999974     334554       4444432      2258999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhcCcccccccCCC-------cceeecccCCCcceeEEeCCCcc-eecCCeEEEEEEeCC-Ccchhhh
Q 019445          258 ATYEEIKNAIKEESEGKLKGILGYTE-------EDVVSTDFVGDSRSSIFDAKAGI-ALSKNFVKLVSWYDN-EWGYSSR  328 (341)
Q Consensus       258 ~~~~ei~~~~~~a~~~~~~~il~~~~-------~~~vs~d~~~~~~s~~~d~~~~~-~~~~~~~k~~~wydn-e~gy~~r  328 (341)
                      ++.+|++++|+++  .||++++.-..       .|.   +..|.- .+.+- .... ...++.+.+++==|| -||=|-+
T Consensus       294 ~~~eei~~~l~~~--~p~V~v~~~~~~~~~~~P~p~---~v~G~n-~v~VG-rir~d~~~~~~l~~~~v~DNL~KGAAgq  366 (377)
T 3uw3_A          294 VPLDEINGILASA--NDWVKVVPNEREASMRDLSPA---KVTGTL-SVPVG-RLRKLAMGGEYLSAFTVGDQLLWGAAEP  366 (377)
T ss_dssp             CCHHHHHHHHHTS--CSSEEECCSSHHHHHHHSSHH---HHTTSS-CEEEE-EEEECTTCTTEEEEEEEEETTCCCCCHH
T ss_pred             CCHHHHHHHHHhC--CCCEEEecCCcccccCCCCHH---HhcCCC-cEEEE-EEEECCCCCCEEEEEEEehhhhHhHHHH
Confidence            9999999999987  57888875321       121   223322 22111 0000 012355666666788 4677777


Q ss_pred             HHHHHHHHh
Q 019445          329 VIDLIVHMA  337 (341)
Q Consensus       329 ~~d~~~~~~  337 (341)
                      .+-.|+.|-
T Consensus       367 Avqn~nl~~  375 (377)
T 3uw3_A          367 LRRMLRILL  375 (377)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            776666654

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=99.24  E-value=8.8e-12  Score=117.60  Aligned_cols=213  Identities=17%  Similarity=0.201  Sum_probs=124.4

Q ss_pred             CceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCCCCC--hhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            5 KKIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPFIS--TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~~~~--~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      +++||||+|+|++|+.+++.+.+ +|.++++++.|...+  ...++.      .+|...             .       
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~------~~g~~~-------------~-------   56 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ------RMGVTT-------------T-------   56 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH------HTTCCE-------------E-------
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHH------HcCCCc-------------c-------
Confidence            36899999999999999999977 899999999987322  222221      111000             0       


Q ss_pred             EecCCCCCC----CccCCCccEEEecCCCccCHHHHHHHHhC--CCcEEEecCCCCCCCeeeeccCccccCC--CCcEEe
Q 019445           82 FGFRNPEEI----PWAKTGAEYVVESTGVFTDKDKAAAHLKG--GAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVS  153 (341)
Q Consensus        82 ~~~~~~~~~----~w~~~~~DvV~~at~~~~s~~~~~~~l~~--G~k~V~lSa~~~d~~~~V~Gvn~~~~~~--~~~iIs  153 (341)
                      ..  +.+++    +|  .++|+||+|||+..+.+.+..++++  |..+++.+..+. .|..++.+|.+++..  ..++++
T Consensus        57 ~~--~~e~ll~~~~~--~~iDvV~~atp~~~h~~~a~~al~a~~Gk~Vi~ekp~~~-g~~~~p~v~~~~~~~~~~~~lva  131 (312)
T 1nvm_B           57 YA--GVEGLIKLPEF--ADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAI-GPYCVPVVNLEEHLGKLNVNMVT  131 (312)
T ss_dssp             SS--HHHHHHHSGGG--GGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECSTTCS-SCBCCHHHHTTTTTTCSEEECCC
T ss_pred             cC--CHHHHHhccCC--CCCcEEEECCChHHHHHHHHHHHHhCCCCEEEEcCcccc-cccccCccCHHHHHhccCCcEEE
Confidence            00  11111    12  3789999999999999999999999  997777654332 233333445555431  236788


Q ss_pred             CCCCccceecchhHHHhhhcceeEE-EEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhc-C
Q 019445          154 NASCTTNCLAPLAKVIHDKFGIVEG-LMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALN-G  231 (341)
Q Consensus       154 np~C~tt~Lapllk~L~~~fgi~~~-~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~-~  231 (341)
                      +|+|.   ..|++..+.+.+..... .+.++.+.+             .+.+.....+-.+..++  +++ +.+.... +
T Consensus       132 ~~g~~---~ipl~~a~~~~~~~~~~~iv~~i~sgs-------------~G~~~~~~l~e~~~~~~--~ai-~~~gg~~~~  192 (312)
T 1nvm_B          132 CGGQA---TIPMVAAVSRVAKVHYAEIVASISSKS-------------AGPGTRANIDEFTETTS--KAI-EVIGGAAKG  192 (312)
T ss_dssp             HHHHH---HHHHHHHHHTTSCEEEEEEEEEEEGGG-------------SCHHHHTCHHHHHHHHH--HHH-HHTTCCSSE
T ss_pred             eCCcc---cchHHHHhhhhccchhHhHhhhhhccc-------------cCCCcccchhhHHHHHH--HHH-HHhhhccCC
Confidence            88884   46788877777765422 223322211             01110111011111111  122 2222111 1


Q ss_pred             c--eeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHh
Q 019445          232 K--LTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEE  270 (341)
Q Consensus       232 ~--l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a  270 (341)
                      |  +.++++..|++  +..++|+.++ ..+.+++.+...+.
T Consensus       193 k~il~~~p~~~p~~--~~~tv~~~~~-~~~~~~~~~~~~~m  230 (312)
T 1nvm_B          193 KAIIIMNPAEPPLI--MRDTVYVLSA-AADQAAVAASVAEM  230 (312)
T ss_dssp             EEEEEEECCSSCCC--EEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCcc--cceeEEEEeC-CCCHHHHHHHHHHH
Confidence            2  45677888887  7889999997 77877766665553

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=98.68  E-value=1.1e-07  Score=87.79  Aligned_cols=102  Identities=24%  Similarity=0.271  Sum_probs=65.8

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      |++ .++||+|+|+ |++|+.+++.+.++|+++|+++.+...+.. .    ..|  .+.+. +           +....+
T Consensus         1 ~~~-~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~-~----g~d--~~~~~-g-----------~~~~~v   60 (273)
T 1dih_A            1 MHD-ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL-L----GSD--AGELA-G-----------AGKTGV   60 (273)
T ss_dssp             -CC-CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT-C----SCC--TTCSS-S-----------SSCCSC
T ss_pred             CCC-CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhh-h----hhh--HHHHc-C-----------CCcCCc
Confidence            664 4589999999 999999999999999999999987622110 0    000  01110 0           000012


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .+..  +.+++   ..++|+|+++|......+.+..++++|...|+-+
T Consensus        61 ~~~~--dl~~~---l~~~DvVIDft~p~~~~~~~~~a~~~G~~vVigT  103 (273)
T 1dih_A           61 TVQS--SLDAV---KDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGT  103 (273)
T ss_dssp             CEES--CSTTT---TTSCSEEEECSCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             eecC--CHHHH---hcCCCEEEEcCChHHHHHHHHHHHhCCCCEEEEC
Confidence            2222  34433   1378999999988888899999999998755433

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.65  E-value=4.1e-08  Score=91.95  Aligned_cols=91  Identities=22%  Similarity=0.263  Sum_probs=62.1

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      |+.|+++||||+|+|++|+.+++.|.++|+++|+++.++.  .+...      . +|-            .       ..
T Consensus         4 M~~M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~--~~~~~------~-~g~------------~-------~~   55 (304)
T 3bio_A            4 MTDDKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRN--PAEVP------F-ELQ------------P-------FR   55 (304)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------------CCT------------T-------SC
T ss_pred             CccCCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCC--HHHHH------H-cCC------------C-------cC
Confidence            5556679999999999999999999999999999998862  21110      0 110            0       00


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~  125 (341)
                      .+.  +..+.    .++|+||.|||.....+.+.+++++|..+++
T Consensus        56 ~~~--~l~~~----~~~DvViiatp~~~h~~~~~~al~aG~~Vi~   94 (304)
T 3bio_A           56 VVS--DIEQL----ESVDVALVCSPSREVERTALEILKKGICTAD   94 (304)
T ss_dssp             EES--SGGGS----SSCCEEEECSCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CHH--HHHhC----CCCCEEEECCCchhhHHHHHHHHHcCCeEEE
Confidence            011  12111    3789999999999999999999999986554

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=98.59  E-value=3.3e-08  Score=91.79  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             CCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCC---hhhhhhhcccccccCcccCceeeecCCcceEECCE
Q 019445            2 AGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFIS---TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         2 ~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~---~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      .+++|+||+|+|+ |++|+.+++++.++|++||+++.++...   ++...          .+. +           +...
T Consensus        17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~g----------el~-G-----------~~~~   74 (288)
T 3ijp_A           17 QGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDAS----------ILI-G-----------SDFL   74 (288)
T ss_dssp             ----CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGG----------GGT-T-----------CSCC
T ss_pred             hccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchH----------Hhh-c-----------cCcC
Confidence            3456799999997 9999999999999999999999886321   11111          110 0           0000


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .++++.  |++++   ..++|+|+++|+.....+.+..++++|...|+-|
T Consensus        75 gv~v~~--dl~~l---l~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGT  119 (288)
T 3ijp_A           75 GVRITD--DPESA---FSNTEGILDFSQPQASVLYANYAAQKSLIHIIGT  119 (288)
T ss_dssp             SCBCBS--CHHHH---TTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECC
T ss_pred             CceeeC--CHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEEC
Confidence            122222  33332   1378999999998888899999999999777644

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.58  E-value=2.7e-08  Score=91.87  Aligned_cols=99  Identities=26%  Similarity=0.301  Sum_probs=65.3

Q ss_pred             CCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         4 ~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |.|+||+|+|+ |++|+.+++++.++|++||+++.++..+.. .    ..|  .+.+. +         +  . ..+.++
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~-~----G~d--~gel~-g---------~--~-~gv~v~   64 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQ-L----GQD--AGAFL-G---------K--Q-TGVALT   64 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTT-T----TSB--TTTTT-T---------C--C-CSCBCB
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccc-c----ccc--HHHHh-C---------C--C-CCceec
Confidence            34689999997 999999999999999999999988632110 0    000  01111 0         0  0 011122


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .  +.+++   ..++|+||++|+.....+.+..++++|.+.|+-+
T Consensus        65 ~--dl~~l---l~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigT  104 (272)
T 4f3y_A           65 D--DIERV---CAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGT  104 (272)
T ss_dssp             C--CHHHH---HHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECC
T ss_pred             C--CHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEEC
Confidence            1  23222   1368999999999999999999999999766544

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.43  E-value=3.4e-07  Score=87.54  Aligned_cols=99  Identities=19%  Similarity=0.198  Sum_probs=63.0

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHc-------CCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcce
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQ-------RDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTL   72 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~-------~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l   72 (341)
                      |+.|.++||||+|+|++|+..++.+..       .|++||++|.|+..+. +.++..+....                  
T Consensus        20 ~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~------------------   81 (393)
T 4fb5_A           20 FQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK------------------   81 (393)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE------------------
T ss_pred             ccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe------------------
Confidence            345667999999999999988876643       5678999999973332 22222111100                  


Q ss_pred             EECCEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           73 LFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        73 ~i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                              .+.  |.+++ ..+.++|+|+-|||.....+.+.+++++|.. |.+=-|
T Consensus        82 --------~y~--d~~el-l~~~~iDaV~IatP~~~H~~~a~~al~aGkh-Vl~EKP  126 (393)
T 4fb5_A           82 --------ATA--DWRAL-IADPEVDVVSVTTPNQFHAEMAIAALEAGKH-VWCEKP  126 (393)
T ss_dssp             --------EES--CHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTCE-EEECSC
T ss_pred             --------ecC--CHHHH-hcCCCCcEEEECCChHHHHHHHHHHHhcCCe-EEEccC
Confidence                    111  22221 1124789999999999999999999999974 444333

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.39  E-value=6.7e-07  Score=84.27  Aligned_cols=89  Identities=20%  Similarity=0.253  Sum_probs=64.9

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +++||||+|+|++|+.+++.+.++|+++++++.++.... .+    .       +                |  +..+. 
T Consensus         2 ~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~----~-------~----------------g--v~~~~-   50 (320)
T 1f06_A            2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DT----K-------T----------------P--VFDVA-   50 (320)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SS----S-------S----------------C--EEEGG-
T ss_pred             CCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hh----c-------C----------------C--CceeC-
Confidence            568999999999999999999999999999998862111 10    0       0                0  11121 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++-   .++|+|++|||.....+.+..++++|.. |+++.|
T Consensus        51 -d~~~ll---~~~DvViiatp~~~h~~~~~~al~aG~~-Vv~ekp   90 (320)
T 1f06_A           51 -DVDKHA---DDVDVLFLCMGSATDIPEQAPKFAQFAC-TVDTYD   90 (320)
T ss_dssp             -GGGGTT---TTCSEEEECSCTTTHHHHHHHHHTTTSE-EECCCC
T ss_pred             -CHHHHh---cCCCEEEEcCCcHHHHHHHHHHHHCCCE-EEECCC
Confidence             233331   3789999999999888999999999974 555544

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.38  E-value=4.1e-07  Score=86.25  Aligned_cols=95  Identities=19%  Similarity=0.197  Sum_probs=64.7

Q ss_pred             CceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            5 KKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      .|+||||+|+|.+|+. +++++.++|+++|++|.|+..+. +.++.      .||--                    ..+
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~------~~g~~--------------------~~y   75 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMAD------RFSVP--------------------HAF   75 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHH------HHTCS--------------------EEE
T ss_pred             CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH------HcCCC--------------------eee
Confidence            4699999999999986 57889999999999999973221 22221      11100                    011


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .  |.+++ ....++|+|+-|||.....+.+.+++++|. .|.+=-|
T Consensus        76 ~--d~~el-l~~~~iDaV~I~tP~~~H~~~~~~al~aGk-hVl~EKP  118 (350)
T 4had_A           76 G--SYEEM-LASDVIDAVYIPLPTSQHIEWSIKAADAGK-HVVCEKP  118 (350)
T ss_dssp             S--SHHHH-HHCSSCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             C--CHHHH-hcCCCCCEEEEeCCCchhHHHHHHHHhcCC-EEEEeCC
Confidence            1  22221 112478999999999999999999999996 3544433

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.35  E-value=6.4e-07  Score=84.51  Aligned_cols=98  Identities=17%  Similarity=0.144  Sum_probs=65.8

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      |++ +++||||+|+|.+|+.+++.|.++|++++++|.|+..+. +.++.      .+|.-.                   
T Consensus         1 M~m-~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~------~~~~~~-------------------   54 (330)
T 3e9m_A            1 MSL-DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAK------ELAIPV-------------------   54 (330)
T ss_dssp             --C-CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHH------HTTCCC-------------------
T ss_pred             CCC-CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHH------HcCCCc-------------------
Confidence            654 468999999999999999999999999999999873222 21111      111000                   


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       .+.  +.+++ ....++|+|+.|||.....+.+..++++|.. |++--|
T Consensus        55 -~~~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~-vl~EKP   99 (330)
T 3e9m_A           55 -AYG--SYEEL-CKDETIDIIYIPTYNQGHYSAAKLALSQGKP-VLLEKP   99 (330)
T ss_dssp             -CBS--SHHHH-HHCTTCSEEEECCCGGGHHHHHHHHHHTTCC-EEECSS
T ss_pred             -eeC--CHHHH-hcCCCCCEEEEcCCCHHHHHHHHHHHHCCCe-EEEeCC
Confidence             000  11111 0123789999999999999999999999965 545444

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.31  E-value=1.1e-06  Score=84.18  Aligned_cols=97  Identities=23%  Similarity=0.319  Sum_probs=64.2

Q ss_pred             CCCC-CceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445            1 MAGD-KKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (341)
Q Consensus         1 ~~~~-~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~   78 (341)
                      |+++ +|+||||+|+|++|+. .++.+.++|+++|++|.|+  +.+...      ..   +. +                
T Consensus         1 M~~~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~--~~~~~~------~~---~~-~----------------   52 (364)
T 3e82_A            1 MSLSNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASR--DEEKVK------RD---LP-D----------------   52 (364)
T ss_dssp             ------CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECS--CHHHHH------HH---CT-T----------------
T ss_pred             CCCCCCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcC--CHHHHH------hh---CC-C----------------
Confidence            5543 3589999999999996 8899999999999999987  222211      11   11 0                


Q ss_pred             EEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        79 i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      ...+.  +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        53 ~~~~~--~~~~l-l~~~~~D~V~i~tp~~~H~~~~~~al~aGk-~Vl~EKP   99 (364)
T 3e82_A           53 VTVIA--SPEAA-VQHPDVDLVVIASPNATHAPLARLALNAGK-HVVVDKP   99 (364)
T ss_dssp             SEEES--CHHHH-HTCTTCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             CcEEC--CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-cEEEeCC
Confidence            01111  22222 012378999999999999999999999996 4554443

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.30  E-value=1.1e-06  Score=83.94  Aligned_cols=97  Identities=25%  Similarity=0.333  Sum_probs=65.5

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      |+ |.++||||+|+|.+|+..++.|.++|+++|++|.|..  .+.... .   ..+|-                     .
T Consensus         1 M~-m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~--~~~~~~-a---~~~g~---------------------~   52 (359)
T 3e18_A            1 MS-LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDIL--AEKREA-A---AQKGL---------------------K   52 (359)
T ss_dssp             ---CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSS--HHHHHH-H---HTTTC---------------------C
T ss_pred             CC-CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCC--HHHHHH-H---HhcCC---------------------c
Confidence            54 3469999999999999999999999999999999873  222111 0   11110                     0


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .+.  +.+++ ....++|+|+.|||.....+.+.+++++|. .|++--|
T Consensus        53 ~~~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-hVl~EKP   97 (359)
T 3e18_A           53 IYE--SYEAV-LADEKVDAVLIATPNDSHKELAISALEAGK-HVVCEKP   97 (359)
T ss_dssp             BCS--CHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             eeC--CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-CEEeeCC
Confidence            010  12221 012378999999999999999999999995 4555444

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.30  E-value=1.4e-06  Score=83.09  Aligned_cols=96  Identities=23%  Similarity=0.294  Sum_probs=66.2

Q ss_pred             CCCCCceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      |++ .++||||+|+|.+|+. .++.+.++|+++|++|.|+  +.+..+.      .++.                    .
T Consensus         1 M~m-~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~--~~~~~~~------~~~~--------------------~   51 (358)
T 3gdo_A            1 MSL-DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTS--RTEEVKR------DFPD--------------------A   51 (358)
T ss_dssp             -CT-TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECS--CHHHHHH------HCTT--------------------S
T ss_pred             CCC-CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcC--CHHHHHh------hCCC--------------------C
Confidence            553 4589999999999996 7899999999999999987  2222211      1100                    1


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      ..+.  +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        52 ~~~~--~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP   97 (358)
T 3gdo_A           52 EVVH--ELEEI-TNDPAIELVIVTTPSGLHYEHTMACIQAGK-HVVMEKP   97 (358)
T ss_dssp             EEES--STHHH-HTCTTCCEEEECSCTTTHHHHHHHHHHTTC-EEEEESS
T ss_pred             ceEC--CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHcCC-eEEEecC
Confidence            1121  23322 112479999999999999999999999995 4555444

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.29  E-value=7.2e-07  Score=80.94  Aligned_cols=82  Identities=20%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      .|+||+|+|+|++|+.+++++.++|+ +|+++.++..+.           .   +                |  ++++. 
T Consensus         2 ~MmkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~-----------~---~----------------g--v~v~~-   47 (243)
T 3qy9_A            2 ASMKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKA-----------T---T----------------P--YQQYQ-   47 (243)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC----------------C----------------C--SCBCS-
T ss_pred             CceEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCccc-----------c---C----------------C--CceeC-
Confidence            35799999999999999999999999 999998862110           0   0                0  11121 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                       +++++   . ++|+|+++|......+.+.  +++|...|+-+
T Consensus        48 -dl~~l---~-~~DVvIDft~p~a~~~~~~--l~~g~~vVigT   83 (243)
T 3qy9_A           48 -HIADV---K-GADVAIDFSNPNLLFPLLD--EDFHLPLVVAT   83 (243)
T ss_dssp             -CTTTC---T-TCSEEEECSCHHHHHHHHT--SCCCCCEEECC
T ss_pred             -CHHHH---h-CCCEEEEeCChHHHHHHHH--HhcCCceEeCC
Confidence             44444   2 7899999988777666665  78888766543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.29  E-value=8.3e-07  Score=83.61  Aligned_cols=98  Identities=16%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      |++ .|+||||+|+|.+|+.+++.|.++|++++++|.++..+. +.++      ..+|.-                    
T Consensus         1 M~m-~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a------~~~~~~--------------------   53 (329)
T 3evn_A            1 MSL-SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFA------NKYHLP--------------------   53 (329)
T ss_dssp             -----CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---------CCCCS--------------------
T ss_pred             CCC-CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH------HHcCCC--------------------
Confidence            553 468999999999999999999988999999999873221 1111      111100                    


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      ..+.  +.+++- ...++|+|+.|||.....+.+.+++++|. .|++--|
T Consensus        54 ~~~~--~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKP   99 (329)
T 3evn_A           54 KAYD--KLEDML-ADESIDVIYVATINQDHYKVAKAALLAGK-HVLVEKP   99 (329)
T ss_dssp             CEES--CHHHHH-TCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             cccC--CHHHHh-cCCCCCEEEECCCcHHHHHHHHHHHHCCC-eEEEccC
Confidence            0111  222221 12378999999999999999999999996 4555544

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.28  E-value=1.6e-06  Score=82.82  Aligned_cols=98  Identities=22%  Similarity=0.210  Sum_probs=66.4

Q ss_pred             CCCceeEEEEccCHHHHHHHHHHH-cCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            3 GDKKIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         3 ~~~~irV~I~G~G~iG~~llr~l~-~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      .|+++||||+|+|.+|+..++.|. .+|.++|++|.|+..+. +..+.      .+|.                   ...
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~------~~g~-------------------~~~   74 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALD------KYAI-------------------EAK   74 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHH------HHTC-------------------CCE
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHH------HhCC-------------------CCe
Confidence            456799999999999999999998 78999999999873332 21111      1110                   001


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .+.  +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        75 ~~~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKP  119 (357)
T 3ec7_A           75 DYN--DYHDL-INDKDVEVVIITASNEAHADVAVAALNANK-YVFCEKP  119 (357)
T ss_dssp             EES--SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             eeC--CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-CEEeecC
Confidence            111  22221 012368999999999999999999999995 4555444

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.27  E-value=9.6e-07  Score=83.65  Aligned_cols=95  Identities=25%  Similarity=0.352  Sum_probs=64.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||+|+|.+|+.+++.|.++|++++++|.|+.  .+....+   ...+|.-                    ..+.  
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~--~~~~~~~---~~~~~~~--------------------~~~~--   54 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVR--EDRLREM---KEKLGVE--------------------KAYK--   54 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSC--HHHHHHH---HHHHTCS--------------------EEES--
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCC--HHHHHHH---HHHhCCC--------------------ceeC--
Confidence            58999999999999999999999999999999872  2211111   0111100                    0111  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.+++ ....++|+|+.|||.....+.+.+++++|. .|++--|
T Consensus        55 ~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~EKP   96 (344)
T 3ezy_A           55 DPHEL-IEDPNVDAVLVCSSTNTHSELVIACAKAKK-HVFCEKP   96 (344)
T ss_dssp             SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESC
T ss_pred             CHHHH-hcCCCCCEEEEcCCCcchHHHHHHHHhcCC-eEEEECC
Confidence            22221 012378999999999999999999999995 4555544

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.26  E-value=9.9e-07  Score=84.24  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=65.2

Q ss_pred             CCCCCceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      |+ |.++||||+|+|.+|+. +++.|.++|++++++|.|+  +.+....+   ...++.                    .
T Consensus         1 M~-M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~--~~~~~~~~---a~~~~~--------------------~   54 (359)
T 3m2t_A            1 MS-LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDS--DLERARRV---HRFISD--------------------I   54 (359)
T ss_dssp             ---CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECS--SHHHHGGG---GGTSCS--------------------C
T ss_pred             CC-CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcC--CHHHHHHH---HHhcCC--------------------C
Confidence            54 34689999999999996 8999999999999999987  22211110   111110                    0


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      ..+.  +.+++- ...++|+|+.|||.....+.+.+++++|.. |.+--|
T Consensus        55 ~~~~--~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aGkh-Vl~EKP  100 (359)
T 3m2t_A           55 PVLD--NVPAML-NQVPLDAVVMAGPPQLHFEMGLLAMSKGVN-VFVEKP  100 (359)
T ss_dssp             CEES--SHHHHH-HHSCCSEEEECSCHHHHHHHHHHHHHTTCE-EEECSC
T ss_pred             cccC--CHHHHh-cCCCCCEEEEcCCcHHHHHHHHHHHHCCCe-EEEECC
Confidence            1111  222220 123789999999999999999999999964 555444

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.26  E-value=2.3e-06  Score=81.39  Aligned_cols=93  Identities=24%  Similarity=0.427  Sum_probs=65.0

Q ss_pred             CceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +++||||+|+|.+|+. .++.+.++|+++|++|.|+  +.+...      ..   +. +                ..++.
T Consensus         6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~--~~~~~~------~~---~~-~----------------~~~~~   57 (352)
T 3kux_A            6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSS--DASKVH------AD---WP-A----------------IPVVS   57 (352)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECS--CHHHHH------TT---CS-S----------------CCEES
T ss_pred             CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECC--CHHHHH------hh---CC-C----------------CceEC
Confidence            3589999999999997 8999999999999999987  232211      11   11 0                01111


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        58 --~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hV~~EKP   99 (352)
T 3kux_A           58 --DPQML-FNDPSIDLIVIPTPNDTHFPLAQSALAAGK-HVVVDKP   99 (352)
T ss_dssp             --CHHHH-HHCSSCCEEEECSCTTTHHHHHHHHHHTTC-EEEECSS
T ss_pred             --CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-cEEEECC
Confidence              22222 112379999999999999999999999995 4555444

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.24  E-value=1.4e-06  Score=81.26  Aligned_cols=94  Identities=19%  Similarity=0.215  Sum_probs=64.5

Q ss_pred             CCceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            4 DKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |+++||||+|+|.+|+. +++.|.++|++++++|.|+.  .+....+   ...+|.                     ..+
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~~~---a~~~~~---------------------~~~   57 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPN--KVKREKI---CSDYRI---------------------MPF   57 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSC--HHHHHHH---HHHHTC---------------------CBC
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCC--HHHHHHH---HHHcCC---------------------CCc
Confidence            45689999999999996 99999999999999999872  2211111   011110                     001


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .  +.+++   ..++|+|+.|||+....+.+..++++|.. |.+--|
T Consensus        58 ~--~~~~l---l~~~D~V~i~tp~~~h~~~~~~al~~gk~-vl~EKP   98 (308)
T 3uuw_A           58 D--SIESL---AKKCDCIFLHSSTETHYEIIKILLNLGVH-VYVDKP   98 (308)
T ss_dssp             S--CHHHH---HTTCSEEEECCCGGGHHHHHHHHHHTTCE-EEECSS
T ss_pred             C--CHHHH---HhcCCEEEEeCCcHhHHHHHHHHHHCCCc-EEEcCC
Confidence            0  22222   12789999999999999999999999974 555444

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.24  E-value=1.6e-06  Score=82.86  Aligned_cols=96  Identities=21%  Similarity=0.275  Sum_probs=65.6

Q ss_pred             CCCCCceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      |++ .|+||||+|+|.+|+. .++.+.++|+++|++|.|+..+  ..+      ..   |.               +  .
T Consensus         1 M~~-~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~------~~---~~---------------~--~   51 (362)
T 3fhl_A            1 MSL-EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKE--LSK------ER---YP---------------Q--A   51 (362)
T ss_dssp             --C-CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGG------TT---CT---------------T--S
T ss_pred             CCC-CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHH------Hh---CC---------------C--C
Confidence            653 4699999999999997 8899999999999999987322  111      11   11               0  1


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      ..+.  +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        52 ~~~~--~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP   97 (362)
T 3fhl_A           52 SIVR--SFKEL-TEDPEIDLIVVNTPDNTHYEYAGMALEAGK-NVVVEKP   97 (362)
T ss_dssp             EEES--CSHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             ceEC--CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-eEEEecC
Confidence            1121  23322 112369999999999999999999999996 4555444

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.24  E-value=1.8e-06  Score=82.01  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=65.5

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |+++||||+|+|.+|+.+++.+.++|+++|++|.|+..+. +..+.      .+|-                     ..+
T Consensus         3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~------~~g~---------------------~~~   55 (354)
T 3db2_A            3 YNPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGK------RYNC---------------------AGD   55 (354)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHH------HHTC---------------------CCC
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH------HcCC---------------------CCc
Confidence            3568999999999999999999999999999999872221 11111      1110                     000


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .  +.+++ ....++|+|+.|||.....+.+.+++++|.. |.+--|
T Consensus        56 ~--~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~-vl~EKP   98 (354)
T 3db2_A           56 A--TMEAL-LAREDVEMVIITVPNDKHAEVIEQCARSGKH-IYVEKP   98 (354)
T ss_dssp             S--SHHHH-HHCSSCCEEEECSCTTSHHHHHHHHHHTTCE-EEEESS
T ss_pred             C--CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcCCE-EEEccC
Confidence            0  11211 0124789999999999999999999999954 555544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.23  E-value=2.1e-06  Score=80.37  Aligned_cols=95  Identities=19%  Similarity=0.237  Sum_probs=63.3

Q ss_pred             CCCCCceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~   78 (341)
                      |++ .++||||+|+|.+|+. +++.|.++|+++++++.|+..+. +.++.      .+|                     
T Consensus         1 m~m-~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~------~~g---------------------   52 (319)
T 1tlt_A            1 MSL-KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICE------SWR---------------------   52 (319)
T ss_dssp             -----CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHH------HHT---------------------
T ss_pred             CCC-CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH------HcC---------------------
Confidence            543 4689999999999996 89999988999999999873322 21111      010                     


Q ss_pred             EEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        79 i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +..+.  +.+.+   ..++|+|+.|||.....+.+..++++|.. |++--|
T Consensus        53 ~~~~~--~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~G~~-v~~eKP   97 (319)
T 1tlt_A           53 IPYAD--SLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGVH-VCVDKP   97 (319)
T ss_dssp             CCBCS--SHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTCE-EEEESS
T ss_pred             CCccC--cHHHh---hcCCCEEEEeCCchhHHHHHHHHHHcCCe-EEEeCC
Confidence            00010  12222   23789999999999999999999999974 444433

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.22  E-value=1.5e-06  Score=81.76  Aligned_cols=94  Identities=24%  Similarity=0.337  Sum_probs=64.6

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ||+||||+|+|.+|+.+++.|.++|++++++|.|+.  .+....+.   ..   +.                  +. +. 
T Consensus         2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~--~~~~~~~~---~~---~~------------------~~-~~-   53 (331)
T 4hkt_A            2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAF--PAAAEAIA---GA---YG------------------CE-VR-   53 (331)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS--HHHHHHHH---HH---TT------------------CE-EC-
T ss_pred             CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCC--HHHHHHHH---HH---hC------------------CC-cC-
Confidence            368999999999999999999999999999999872  22111110   00   00                  01 11 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++ ....++|+|+.|||.....+.+..++++|. .|.+--|
T Consensus        54 -~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~EKP   95 (331)
T 4hkt_A           54 -TIDAI-EAAADIDAVVICTPTDTHADLIERFARAGK-AIFCEKP   95 (331)
T ss_dssp             -CHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             -CHHHH-hcCCCCCEEEEeCCchhHHHHHHHHHHcCC-cEEEecC
Confidence             22221 012378999999999999999999999995 4555444

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.22  E-value=2e-06  Score=81.35  Aligned_cols=94  Identities=24%  Similarity=0.439  Sum_probs=65.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||+|+|.+|+.+++.|.++|++++++|.|+.  .+....+   ...+|                     ...+.  
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~--~~~~~~~---a~~~g---------------------~~~~~--   55 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPF--IEGAQRL---AEANG---------------------AEAVA--   55 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS--HHHHHHH---HHTTT---------------------CEEES--
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCC--HHHHHHH---HHHcC---------------------CceeC--
Confidence            58999999999999999999999999999999872  2211110   01111                     01111  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.+++ ....++|+|+.|||.....+.+..++++|.. |++--|
T Consensus        56 ~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~-v~~EKP   97 (344)
T 3euw_A           56 SPDEV-FARDDIDGIVIGSPTSTHVDLITRAVERGIP-ALCEKP   97 (344)
T ss_dssp             SHHHH-TTCSCCCEEEECSCGGGHHHHHHHHHHTTCC-EEECSC
T ss_pred             CHHHH-hcCCCCCEEEEeCCchhhHHHHHHHHHcCCc-EEEECC
Confidence            22221 0123789999999999999999999999964 555444

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.22  E-value=1.6e-06  Score=82.37  Aligned_cols=95  Identities=19%  Similarity=0.280  Sum_probs=65.3

Q ss_pred             ceeEEEEccCHHHH-HHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~-~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||+|+|.+|+ ..++.+.++|+++|++|.++. ..+.++.      .++..                +  +..+. 
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~------~~~~~----------------~--~~~~~-   55 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAA------PFKEK----------------G--VNFTA-   55 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHH------HHHTT----------------T--CEEES-
T ss_pred             eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHH------hhCCC----------------C--CeEEC-
Confidence            58999999999998 688889899999999999974 2222211      11000                0  11121 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++- ...++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        56 -~~~~ll-~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKP   97 (349)
T 3i23_A           56 -DLNELL-TDPEIELITICTPAHTHYDLAKQAILAGK-SVIVEKP   97 (349)
T ss_dssp             -CTHHHH-SCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             -CHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHcCC-EEEEECC
Confidence             233321 12479999999999999999999999995 4555433

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.21  E-value=1.2e-06  Score=82.75  Aligned_cols=90  Identities=19%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CCCceeEEEEccCHHHH-HHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            3 GDKKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         3 ~~~~irV~I~G~G~iG~-~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      .|.++||||+|+|.+|+ ..++.+.++|+++|++|.|+..+.               +.                  ++.
T Consensus        22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~---------------~g------------------~~~   68 (330)
T 4ew6_A           22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV---------------EG------------------VNS   68 (330)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC---------------TT------------------SEE
T ss_pred             cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh---------------cC------------------CCc
Confidence            45579999999999999 799999999999999999872110               00                  011


Q ss_pred             EecCCCCCCCccC-CCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           82 FGFRNPEEIPWAK-TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        82 ~~~~~~~~~~w~~-~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.  +.+++ ... .++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        69 ~~--~~~~l-l~~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP  113 (330)
T 4ew6_A           69 YT--TIEAM-LDAEPSIDAVSLCMPPQYRYEAAYKALVAGK-HVFLEKP  113 (330)
T ss_dssp             ES--SHHHH-HHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-EEEECSS
T ss_pred             cC--CHHHH-HhCCCCCCEEEEeCCcHHHHHHHHHHHHcCC-cEEEeCC
Confidence            11  22221 011 378999999999999999999999995 4555443

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.21  E-value=5.9e-07  Score=85.77  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=64.9

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCc-------EEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEEC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDV-------ELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFG   75 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~-------elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~   75 (341)
                      |.++||||+|+|++|+..++.+.+.|.+       ||++|.|+..+. +..+.      .||.-                
T Consensus         4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~------~~g~~----------------   61 (390)
T 4h3v_A            4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAG------KLGWS----------------   61 (390)
T ss_dssp             CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHH------HHTCS----------------
T ss_pred             CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHH------HcCCC----------------
Confidence            5679999999999999999998877643       999999973221 21111      11100                


Q ss_pred             CEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        76 g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                          .++.  |.+++ ....++|+|+-|||.....+.+.+++++|. .|.+=-|
T Consensus        62 ----~~~~--d~~~l-l~~~~iDaV~I~tP~~~H~~~~~~al~aGk-hVl~EKP  107 (390)
T 4h3v_A           62 ----TTET--DWRTL-LERDDVQLVDVCTPGDSHAEIAIAALEAGK-HVLCEKP  107 (390)
T ss_dssp             ----EEES--CHHHH-TTCTTCSEEEECSCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             ----cccC--CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHcCC-CceeecC
Confidence                1111  22221 113479999999999999999999999996 4555444

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.19  E-value=2e-06  Score=81.07  Aligned_cols=94  Identities=21%  Similarity=0.200  Sum_probs=64.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC--CcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD--DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p--~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |+||||+|+|.+|+.+++.|.+.|  +++|++|.|+..+. +.++.      .+|..                    ..+
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~------~~~~~--------------------~~~   55 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQ------KHDIP--------------------KAY   55 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHH------HHTCS--------------------CEE
T ss_pred             ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHH------HcCCC--------------------ccc
Confidence            589999999999999999998877  47999999873221 11111      11100                    001


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .  +.+++ ....++|+|+.|||+....+.+.+++++|. .|.+--|
T Consensus        56 ~--~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~~Gk-hVl~EKP   98 (334)
T 3ohs_X           56 G--SYEEL-AKDPNVEVAYVGTQHPQHKAAVMLCLAAGK-AVLCEKP   98 (334)
T ss_dssp             S--SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             C--CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHhcCC-EEEEECC
Confidence            1  12221 012378999999999999999999999995 4655544

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.18  E-value=1.7e-06  Score=82.49  Aligned_cols=100  Identities=14%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             CCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         3 ~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      ++.++||||+|+|.+|+.+++.|.++|++++++|.++..+. +.++      ..+|...        .         ...
T Consensus         3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a------~~~~~~~--------~---------~~~   59 (362)
T 1ydw_A            3 TETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFA------TANNYPE--------S---------TKI   59 (362)
T ss_dssp             ---CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH------HHTTCCT--------T---------CEE
T ss_pred             CCCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHH------HHhCCCC--------C---------Cee
Confidence            34568999999999999999999999999999999873221 1111      1111000        0         011


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.  +.+++ ....++|+|+.|||.....+.+.+++++|.. |++--|
T Consensus        60 ~~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk~-V~~EKP  103 (362)
T 1ydw_A           60 HG--SYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKGKH-ILLEKP  103 (362)
T ss_dssp             ES--SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTTCE-EEECSS
T ss_pred             eC--CHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHCCCe-EEEecC
Confidence            11  22221 0123689999999999999999999999964 444433

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.18  E-value=1.9e-06  Score=81.93  Aligned_cols=95  Identities=21%  Similarity=0.242  Sum_probs=65.2

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcC-CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~-p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +|+||||+|+|.+|+.+++.+.++ |.++++++.|+.  .+....+.   ..+|                     +..+.
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~--~~~~~~~~---~~~~---------------------~~~~~   65 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDID--PAALKAAV---ERTG---------------------ARGHA   65 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSS--HHHHHHHH---HHHC---------------------CEEES
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCC--HHHHHHHH---HHcC---------------------CceeC
Confidence            468999999999999999999988 899999999872  22111100   0110                     11121


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.+++ ....++|+|+.|||.....+.+.+++++|. .|++--|
T Consensus        66 --~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~EKP  107 (354)
T 3q2i_A           66 --SLTDM-LAQTDADIVILTTPSGLHPTQSIECSEAGF-HVMTEKP  107 (354)
T ss_dssp             --CHHHH-HHHCCCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             --CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCCC-CEEEeCC
Confidence              22222 112378999999999999999999999995 4555444

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.18  E-value=1.6e-06  Score=82.54  Aligned_cols=98  Identities=14%  Similarity=0.144  Sum_probs=65.1

Q ss_pred             CCCCceeEEEEccCHHHH-HHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            2 AGDKKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         2 ~~~~~irV~I~G~G~iG~-~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      +.|.++||||+|+|.+|+ .+++.|.++|+++|++|.|+.  .+....+   ...+|                     +.
T Consensus        23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~~~---a~~~g---------------------~~   76 (350)
T 3rc1_A           23 ANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR--WDRAKRF---TERFG---------------------GE   76 (350)
T ss_dssp             ---CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS--HHHHHHH---HHHHC---------------------SE
T ss_pred             CCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC--HHHHHHH---HHHcC---------------------CC
Confidence            345679999999999998 799999999999999999872  2211110   01111                     01


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .+.  +.+++ ....++|+|+.|||.....+.+.+++++|.. |++--|
T Consensus        77 ~~~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk~-Vl~EKP  121 (350)
T 3rc1_A           77 PVE--GYPAL-LERDDVDAVYVPLPAVLHAEWIDRALRAGKH-VLAEKP  121 (350)
T ss_dssp             EEE--SHHHH-HTCTTCSEEEECCCGGGHHHHHHHHHHTTCE-EEEESS
T ss_pred             CcC--CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHCCCc-EEEeCC
Confidence            111  22222 0123789999999999999999999999964 544433

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.17  E-value=1.2e-06  Score=85.14  Aligned_cols=95  Identities=19%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcC--------CCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEEC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQR--------DDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFG   75 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~--------p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~   75 (341)
                      .++||||+|+|++|+..++.+.+.        +++||++|.|+..+. +..+.      .+|.-                
T Consensus        25 ~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~------~~~~~----------------   82 (412)
T 4gqa_A           25 ARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAA------KLGAE----------------   82 (412)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHH------HHTCS----------------
T ss_pred             ccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHH------HcCCC----------------
Confidence            369999999999999999988764        357999999973221 21111      11100                


Q ss_pred             CEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        76 g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                          .++.  |.+++ ....++|+|+-|||.....+.+.+++++|. .|.+--|
T Consensus        83 ----~~y~--d~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP  128 (412)
T 4gqa_A           83 ----KAYG--DWREL-VNDPQVDVVDITSPNHLHYTMAMAAIAAGK-HVYCEKP  128 (412)
T ss_dssp             ----EEES--SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEESC
T ss_pred             ----eEEC--CHHHH-hcCCCCCEEEECCCcHHHHHHHHHHHHcCC-CeEeecC
Confidence                1111  22221 112478999999999999999999999996 4555544

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.16  E-value=3e-06  Score=80.23  Aligned_cols=96  Identities=19%  Similarity=0.224  Sum_probs=65.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHH-cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~-~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||+|+|.+|+.+++.+. .+|+++|++|.|+.  .+....+   ...+|.                   ....+. 
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~--~~~~~~~---~~~~g~-------------------~~~~~~-   56 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN--QEAAQKV---VEQYQL-------------------NATVYP-   56 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSS--HHHHHHH---HHHTTC-------------------CCEEES-
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCC--HHHHHHH---HHHhCC-------------------CCeeeC-
Confidence            589999999999999999999 78999999999872  2211110   111110                   001111 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++ ....++|+|+.|||.....+.+.+++++|. .|++--|
T Consensus        57 -~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk-~vl~EKP   98 (344)
T 3mz0_A           57 -NDDSL-LADENVDAVLVTSWGPAHESSVLKAIKAQK-YVFCEKP   98 (344)
T ss_dssp             -SHHHH-HHCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             -CHHHH-hcCCCCCEEEECCCchhHHHHHHHHHHCCC-cEEEcCC
Confidence             22221 012368999999999999999999999995 4555544

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.14  E-value=3.8e-06  Score=79.59  Aligned_cols=94  Identities=16%  Similarity=0.226  Sum_probs=63.8

Q ss_pred             ceeEEEEccCHHHHH-HHH-HHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRL-VAR-VALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~-llr-~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |+||||+|+|.+|+. .++ ++..+|+++|++|.|+..+....+      .   .+.               +  +..+.
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~------~---~~~---------------~--~~~~~   55 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA------P---IYS---------------H--IHFTS   55 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGS------G---GGT---------------T--CEEES
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHH------H---hcC---------------C--CceEC
Confidence            589999999999985 788 667889999999999733221100      0   111               0  11221


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.+++ ....++|+|+.|||.....+.+.+++++|. .|++--|
T Consensus        56 --~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EKP   97 (345)
T 3f4l_A           56 --DLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAGK-NVLVEKP   97 (345)
T ss_dssp             --CTHHH-HTCTTEEEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             --CHHHH-hcCCCCCEEEEcCChHHHHHHHHHHHHcCC-cEEEeCC
Confidence              33332 112369999999999999999999999995 4554443

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.13  E-value=2.9e-06  Score=80.35  Aligned_cols=100  Identities=23%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CCCCCceeEEEEccC-HHHHHHHHHHHcC-CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEE
Q 019445            1 MAGDKKIKIGINGFG-RIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKP   78 (341)
Q Consensus         1 ~~~~~~irV~I~G~G-~iG~~llr~l~~~-p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~   78 (341)
                      |..+.++||||+|+| .+|+..++.+.+. |.++|++|.|+.  .+....+   ...+|.                    
T Consensus        13 ~~~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~--~~~~~~~---a~~~~~--------------------   67 (340)
T 1zh8_A           13 MKPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT--RSHAEEF---AKMVGN--------------------   67 (340)
T ss_dssp             ---CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS--HHHHHHH---HHHHSS--------------------
T ss_pred             cCCCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCC--HHHHHHH---HHHhCC--------------------
Confidence            444567999999999 8999999999998 899999999972  2211111   011110                    


Q ss_pred             EEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           79 VAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        79 i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      ..++.  +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        68 ~~~~~--~~~~l-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~EKP  114 (340)
T 1zh8_A           68 PAVFD--SYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKGV-HVICEKP  114 (340)
T ss_dssp             CEEES--CHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             CcccC--CHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHCCC-cEEEeCC
Confidence            01111  22221 112378999999999999999999999996 4555444

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.12  E-value=4.9e-06  Score=81.54  Aligned_cols=100  Identities=13%  Similarity=0.085  Sum_probs=65.9

Q ss_pred             CCCceeEEEEccCHHHH-HHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            3 GDKKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         3 ~~~~irV~I~G~G~iG~-~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      .|.++||||+|+|.+|+ .+++.|.++++++|++|.|..  .+....   +...+|.-. .               .+.+
T Consensus        80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~--~~~~~~---~a~~~g~~~-~---------------~~~~  138 (433)
T 1h6d_A           80 EDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGN--AEKAKI---VAAEYGVDP-R---------------KIYD  138 (433)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSC--HHHHHH---HHHHTTCCG-G---------------GEEC
T ss_pred             CCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCC--HHHHHH---HHHHhCCCc-c---------------cccc
Confidence            45679999999999997 899999998999999999872  221111   011111100 0               0111


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +.  +.+++- ...++|+|+.|||.....+.+..++++|.. |++-
T Consensus       139 ~~--~~~~ll-~~~~vD~V~iatp~~~h~~~~~~al~aGk~-Vl~E  180 (433)
T 1h6d_A          139 YS--NFDKIA-KDPKIDAVYIILPNSLHAEFAIRAFKAGKH-VMCE  180 (433)
T ss_dssp             SS--SGGGGG-GCTTCCEEEECSCGGGHHHHHHHHHHTTCE-EEEC
T ss_pred             cC--CHHHHh-cCCCCCEEEEcCCchhHHHHHHHHHHCCCc-EEEc
Confidence            11  223321 123799999999999999999999999964 4443

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=98.10  E-value=4.9e-06  Score=78.57  Aligned_cols=98  Identities=19%  Similarity=0.215  Sum_probs=59.5

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcC------CCcEEEEeeCCCCChh----hhhhhcccccccCcccCceeeecCCcceE
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQR------DDVELVAVNDPFISTD----YMTYMFKYDSVHGQWKHNELKVKDEKTLL   73 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~------p~~elv~i~~~~~~~~----~~a~ll~~ds~~g~~~~~~v~~~~~~~l~   73 (341)
                      |.++||||+|+|.+|+.+++.|.++      ++++|++|.++....-    .....+.....+|.+.          .. 
T Consensus         2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~----------~~-   70 (325)
T 3ing_A            2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS----------DR-   70 (325)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC----------SS-
T ss_pred             CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC----------cc-
Confidence            5679999999999999999999876      7899999998732110    0000000000001110          00 


Q ss_pred             ECCEEEEEEecCCCCCCCccCCCccEEEecCCCccC----HHHHHHHHhCCCcE
Q 019445           74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD----KDKAAAHLKGGAKK  123 (341)
Q Consensus        74 i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s----~~~~~~~l~~G~k~  123 (341)
                             .+   +..++ ....++|+|++|||+...    .+.+.+++++|..+
T Consensus        71 -------~~---d~~e~-l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhV  113 (325)
T 3ing_A           71 -------AF---SGPED-LMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNV  113 (325)
T ss_dssp             -------BC---CSGGG-GTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEE
T ss_pred             -------cC---CHHHH-hcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeE
Confidence                   00   11111 012478999999997543    57888999999843

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.07  E-value=4.9e-06  Score=78.53  Aligned_cols=94  Identities=17%  Similarity=0.242  Sum_probs=63.1

Q ss_pred             CceeEEEEccCHHHHHHHHHHH-cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~-~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .++||||+|+|.+|+.+++.|. +++.+++++|.|+.  .+....+   ...+|.                    ..++.
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~--~~~~~~~---a~~~g~--------------------~~~~~   61 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD--SNQLEWA---KNELGV--------------------ETTYT   61 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSC--HHHHHHH---HHTTCC--------------------SEEES
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCC--HHHHHHH---HHHhCC--------------------CcccC
Confidence            4689999999999999999998 88899999999872  2211110   011110                    01111


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                        +.+++ ....++|+|+.|||.....+.+.+++++|. .|++-
T Consensus        62 --~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~G~-~v~~e  101 (346)
T 3cea_A           62 --NYKDM-IDTENIDAIFIVAPTPFHPEMTIYAMNAGL-NVFCE  101 (346)
T ss_dssp             --CHHHH-HTTSCCSEEEECSCGGGHHHHHHHHHHTTC-EEEEC
T ss_pred             --CHHHH-hcCCCCCEEEEeCChHhHHHHHHHHHHCCC-EEEEc
Confidence              12221 011378999999999999999999999995 45443

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.07  E-value=7.2e-06  Score=80.53  Aligned_cols=95  Identities=20%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             CCCceeEEEEccCHHHHHHHHHHHcC---------CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceE
Q 019445            3 GDKKIKIGINGFGRIGRLVARVALQR---------DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLL   73 (341)
Q Consensus         3 ~~~~irV~I~G~G~iG~~llr~l~~~---------p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~   73 (341)
                      +|.++||||+|+|.+|+.+++.|.+|         ++++|++|.++.  .+.....+         . +           
T Consensus         7 MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~--~~~~~~~~---------~-~-----------   63 (444)
T 3mtj_A            7 GMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRN--LDKAEALA---------G-G-----------   63 (444)
T ss_dssp             SCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSC--HHHHHHHH---------T-T-----------
T ss_pred             hhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECC--HHHhhhhc---------c-c-----------
Confidence            35569999999999999999988753         689999999872  21111000         0 0           


Q ss_pred             ECCEEEEEEecCCCCCCCccCCCccEEEecCCC-ccCHHHHHHHHhCCCcEEEecCC
Q 019445           74 FGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGV-FTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        74 i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~-~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                           ..++.  |++++ ..+.++|+|++|||. ..+.+.+.+++++|.. |+...+
T Consensus        64 -----~~~~~--d~~el-l~d~diDvVve~tp~~~~h~~~~~~AL~aGKh-Vvtenk  111 (444)
T 3mtj_A           64 -----LPLTT--NPFDV-VDDPEIDIVVELIGGLEPARELVMQAIANGKH-VVTANK  111 (444)
T ss_dssp             -----CCEES--CTHHH-HTCTTCCEEEECCCSSTTHHHHHHHHHHTTCE-EEECCH
T ss_pred             -----CcccC--CHHHH-hcCCCCCEEEEcCCCchHHHHHHHHHHHcCCE-EEECCc
Confidence                 00111  22221 112478999999996 7888999999999974 444433

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.06  E-value=7.6e-06  Score=80.34  Aligned_cols=101  Identities=26%  Similarity=0.316  Sum_probs=65.3

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |+++||||+|+|.+|+..++.+.++|.++|++|.|+..+. +..+..+  . .+| ++                 ...++
T Consensus        18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~--~-~~g-~~-----------------~~~~~   76 (444)
T 2ixa_A           18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEIL--K-KNG-KK-----------------PAKVF   76 (444)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHH--H-HTT-CC-----------------CCEEE
T ss_pred             CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHH--H-hcC-CC-----------------CCcee
Confidence            4568999999999999999999999999999999873221 1111100  0 011 00                 01112


Q ss_pred             e--cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           83 G--FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        83 ~--~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .  +.+.+++ ....++|+|+.|||.....+.+.+++++|. .|.+-
T Consensus        77 ~~~~~~~~~l-l~~~~vD~V~i~tp~~~h~~~~~~al~aGk-hV~~E  121 (444)
T 2ixa_A           77 GNGNDDYKNM-LKDKNIDAVFVSSPWEWHHEHGVAAMKAGK-IVGME  121 (444)
T ss_dssp             CSSTTTHHHH-TTCTTCCEEEECCCGGGHHHHHHHHHHTTC-EEEEC
T ss_pred             ccCCCCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-eEEEe
Confidence            1  0012221 112379999999999999999999999996 45443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.05  E-value=4.7e-06  Score=65.42  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=62.1

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +++||.|+|+|++|+.+++.|.+++..+++.+. +  +.+....+.    ..+ .           ...       ....
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~-r--~~~~~~~~~----~~~-~-----------~~~-------~~d~   57 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVAD-H--DLAALAVLN----RMG-V-----------ATK-------QVDA   57 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEE-S--CHHHHHHHH----TTT-C-----------EEE-------ECCT
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEe-C--CHHHHHHHH----hCC-C-----------cEE-------EecC
Confidence            357999999999999999999988756766554 3  222211111    000 0           000       0000


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .+++.+.-...++|+||.|+|.......+....+.|++.++++.+
T Consensus        58 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~  102 (118)
T 3ic5_A           58 KDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTED  102 (118)
T ss_dssp             TCHHHHHHHTTTCSEEEECSCGGGHHHHHHHHHHTTCEEECCCSC
T ss_pred             CCHHHHHHHHcCCCEEEECCCchhhHHHHHHHHHhCCCEEEecCc
Confidence            011111000237899999999988888888889999999988764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=98.04  E-value=1.6e-05  Score=75.18  Aligned_cols=85  Identities=20%  Similarity=0.231  Sum_probs=60.6

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC--------CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD--------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGE   76 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p--------~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g   76 (341)
                      +++||||+|+|.+|+.+++.+.+++        +++|++|.++.....           . .+. .      . .     
T Consensus         2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-----------~-~~~-~------~-~-----   56 (332)
T 2ejw_A            2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-----------R-AIP-Q------E-L-----   56 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-----------C-SSC-G------G-G-----
T ss_pred             CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-----------h-ccC-c------c-c-----
Confidence            4689999999999999999999887        789999998621100           0 011 0      0 0     


Q ss_pred             EEEEEEecCCCCCCCccCCCccEEEecCCCc-cCHHHHHHHHhCCCcEE
Q 019445           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGAKKV  124 (341)
Q Consensus        77 ~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~-~s~~~~~~~l~~G~k~V  124 (341)
                          .+.  |++++   . ++|+|++|||.. ...+.+.+++++|..+|
T Consensus        57 ----~~~--d~~~l---l-~iDvVve~t~~~~~a~~~~~~AL~aGKhVV   95 (332)
T 2ejw_A           57 ----LRA--EPFDL---L-EADLVVEAMGGVEAPLRLVLPALEAGIPLI   95 (332)
T ss_dssp             ----EES--SCCCC---T-TCSEEEECCCCSHHHHHHHHHHHHTTCCEE
T ss_pred             ----ccC--CHHHH---h-CCCEEEECCCCcHHHHHHHHHHHHcCCeEE
Confidence                111  45554   2 789999999987 45678888999998544

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=98.03  E-value=6.9e-06  Score=76.25  Aligned_cols=90  Identities=18%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHc---CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~---~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      +.|+||||+|+|.+|+..++.+..   ++.+++++|.+....          ...+                   |  +.
T Consensus         5 ~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~----------a~~~-------------------g--~~   53 (294)
T 1lc0_A            5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL----------GSLD-------------------E--VR   53 (294)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC----------CEET-------------------T--EE
T ss_pred             CCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH----------HHHc-------------------C--CC
Confidence            346899999999999999999887   678999999886210          0000                   0  00


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +  .+.+++ ....++|+|+.|||+....+.+.+++++|.. |.+--|
T Consensus        54 -~--~~~~el-l~~~~vD~V~i~tp~~~H~~~~~~al~aGkh-Vl~EKP   97 (294)
T 1lc0_A           54 -Q--ISLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAGKH-VLVEYP   97 (294)
T ss_dssp             -B--CCHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTTCE-EEEESC
T ss_pred             -C--CCHHHH-hcCCCCCEEEEeCCcHhHHHHHHHHHHCCCc-EEEeCC
Confidence             0  022221 0123799999999999999999999999974 444433

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.97  E-value=5.7e-06  Score=77.31  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=64.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +++||||+|+|.+|+.+++.|.++|+++++++.++  +.+...          .+. .        .       +..+. 
T Consensus         9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~--~~~~~~----------~~~-~--------~-------~~~~~-   59 (315)
T 3c1a_A            9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASS--NPDNLA----------LVP-P--------G-------CVIES-   59 (315)
T ss_dssp             CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEES--CHHHHT----------TCC-T--------T-------CEEES-
T ss_pred             CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeC--CHHHHH----------HHH-h--------h-------CcccC-
Confidence            46899999999999999999999989999999886  222111          011 0        0       11121 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++ ....++|+|+.|||.....+.+.+++++|.. |++--|
T Consensus        60 -~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~-v~~eKP  101 (315)
T 3c1a_A           60 -DWRSV-VSAPEVEAVIIATPPATHAEITLAAIASGKA-VLVEKP  101 (315)
T ss_dssp             -STHHH-HTCTTCCEEEEESCGGGHHHHHHHHHHTTCE-EEEESS
T ss_pred             -CHHHH-hhCCCCCEEEEeCChHHHHHHHHHHHHCCCc-EEEcCC
Confidence             22222 0123789999999999999999999999963 444433

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.95  E-value=2.9e-05  Score=70.40  Aligned_cols=75  Identities=21%  Similarity=0.259  Sum_probs=59.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +||+|+|+ |++|+.+++.+.++|+++|+++.+...+                +                          
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~d----------------l--------------------------   38 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDP----------------L--------------------------   38 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCC----------------T--------------------------
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCC----------------H--------------------------
Confidence            48999999 9999999999998989999999875111                0                          


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                        +.+.  ..++|+|+|+|+.....+.+..++++|+..|+-+
T Consensus        39 --~~~~--~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigT   76 (245)
T 1p9l_A           39 --SLLT--DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGT   76 (245)
T ss_dssp             --HHHH--HTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECC
T ss_pred             --HHHh--ccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcC
Confidence              0000  0257999999999999999999999999766644

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.94  E-value=1.6e-05  Score=75.22  Aligned_cols=94  Identities=22%  Similarity=0.293  Sum_probs=57.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC--------CCcEEEEeeCCCCCh-hh--hhhhcccccccCcccCceeeecCCcceEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQR--------DDVELVAVNDPFIST-DY--MTYMFKYDSVHGQWKHNELKVKDEKTLLF   74 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~--------p~~elv~i~~~~~~~-~~--~a~ll~~ds~~g~~~~~~v~~~~~~~l~i   74 (341)
                      |+||||+|+|.+|+.+++.+.++        ++++|++|.++.... +.  ....+......+.+               
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~---------------   66 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGML---------------   66 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSC---------------
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccc---------------
Confidence            48999999999999999999988        899999999873211 00  00000000000000               


Q ss_pred             CCEEEEEEecCCCCCCCccCCCccEEEecCCCccC----HHHHHHHHhCCCc
Q 019445           75 GEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTD----KDKAAAHLKGGAK  122 (341)
Q Consensus        75 ~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s----~~~~~~~l~~G~k  122 (341)
                             +...|.+++ ....++|+|++|||+...    .+.+..++++|..
T Consensus        67 -------~~~~d~~~l-l~~~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkh  110 (327)
T 3do5_A           67 -------RDDAKAIEV-VRSADYDVLIEASVTRVDGGEGVNYIREALKRGKH  110 (327)
T ss_dssp             -------SBCCCHHHH-HHHSCCSEEEECCCCC----CHHHHHHHHHTTTCE
T ss_pred             -------cCCCCHHHH-hcCCCCCEEEECCCCcccchhHHHHHHHHHHCCCe
Confidence                   000011111 012368999999998765    7888999999984

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.93  E-value=6.1e-06  Score=81.96  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=67.7

Q ss_pred             CCCCceeEEEEcc----CHHHHHHHHHHHcC-CCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEEC
Q 019445            2 AGDKKIKIGINGF----GRIGRLVARVALQR-DDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFG   75 (341)
Q Consensus         2 ~~~~~irV~I~G~----G~iG~~llr~l~~~-p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~   75 (341)
                      ..|.++||||+|+    |.+|+..++.|.++ |.++|++|.|+..+. +.++.      .+|- +               
T Consensus        35 ~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~------~~g~-~---------------   92 (479)
T 2nvw_A           35 PSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIE------QLQL-K---------------   92 (479)
T ss_dssp             GGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHH------HTTC-T---------------
T ss_pred             CCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHH------HcCC-C---------------
Confidence            3455699999999    99999999999998 899999999873211 11111      1110 0               


Q ss_pred             CEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCC-----cEEEecCC
Q 019445           76 EKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVVISAP  129 (341)
Q Consensus        76 g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~-----k~V~lSa~  129 (341)
                      +  ...+.  +.+++ ....++|+|+.|||.....+.+.+++++|.     |.|.+--|
T Consensus        93 ~--~~~~~--d~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP  146 (479)
T 2nvw_A           93 H--ATGFD--SLESF-AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWA  146 (479)
T ss_dssp             T--CEEES--CHHHH-HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESS
T ss_pred             c--ceeeC--CHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCC
Confidence            0  01111  22222 012378999999999999999999999993     55666544

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.88  E-value=1.1e-05  Score=72.24  Aligned_cols=135  Identities=20%  Similarity=0.227  Sum_probs=79.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      +||||+|+|.+|+.+++.|. +++++++++.++....+                          .         .+.  +
T Consensus         1 m~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~~--------------------------~---------~~~--~   42 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEHE--------------------------K---------MVR--G   42 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCCT--------------------------T---------EES--S
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcchh--------------------------h---------hcC--C
Confidence            38999999999999999988 57799999988621000                          0         000  1


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccC-CCCcEEeCCCCccceecch
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYK-PELDIVSNASCTTNCLAPL  165 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~-~~~~iIsnp~C~tt~Lapl  165 (341)
                      ++++-  ..++|+||+|||.....+.+..++++|..+++.+....+.+.+.-.+- +..+ .+..++-.+++...  ...
T Consensus        43 ~~~l~--~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~-~~a~~~g~~~~i~~~~~g~--~~~  117 (236)
T 2dc1_A           43 IDEFL--QREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVR-EVCRKTGRRVYIASGAIGG--LDA  117 (236)
T ss_dssp             HHHHT--TSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHH-HHHHHHCCCEEECCTTCSC--HHH
T ss_pred             HHHHh--cCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHH-HHHHhcCCeEEecCccccC--hHH
Confidence            22210  037899999999999999999999999865554422111111000110 0011 12344445554433  233


Q ss_pred             hHHHhhhcceeEEEEEEEeec
Q 019445          166 AKVIHDKFGIVEGLMTTVHSI  186 (341)
Q Consensus       166 lk~L~~~fgi~~~~ittv~a~  186 (341)
                      ++....  |+++..+++.+..
T Consensus       118 ~~~~~~--~~~~~~~~~~~~~  136 (236)
T 2dc1_A          118 IFSASE--LIEEIVLTTRKNW  136 (236)
T ss_dssp             HHHTGG--GEEEEEEEEEEEG
T ss_pred             HHHhhc--cccEEEEEEEcCh
Confidence            444332  7777777776654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.87  E-value=3.3e-05  Score=72.36  Aligned_cols=89  Identities=19%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             ceeEEEEccCHHHH-HHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~-~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||+|+|.+|+ .+++.|.++|.++++ |.|+.  .+....+   ...+|. +          .         .+..
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d~~--~~~~~~~---a~~~g~-~----------~---------~~~~   55 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRN--PKVLGTL---ATRYRV-S----------A---------TCTD   55 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSC--HHHHHHH---HHHTTC-C----------C---------CCSS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCCceEE-EEeCC--HHHHHHH---HHHcCC-C----------c---------cccC
Confidence            58999999999998 499999988899999 98862  2211111   011110 0          0         0000


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEE
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV  124 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V  124 (341)
                       ..+.+   ..++|+|+.|||.....+.+.+++++|..++
T Consensus        56 -~~~~l---~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~   91 (323)
T 1xea_A           56 -YRDVL---QYGVDAVMIHAATDVHSTLAAFFLHLGIPTF   91 (323)
T ss_dssp             -TTGGG---GGCCSEEEECSCGGGHHHHHHHHHHTTCCEE
T ss_pred             -HHHHh---hcCCCEEEEECCchhHHHHHHHHHHCCCeEE
Confidence             11222   2479999999999999999999999997533

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.87  E-value=2.1e-05  Score=74.01  Aligned_cols=95  Identities=14%  Similarity=0.136  Sum_probs=60.6

Q ss_pred             CCceeEEEEccCHHHH-HHHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            4 DKKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~-~llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      |+++||||+|+|.+|. .+++.|. ++.++|++|.|+..+. +.++.      .+|.-                    ..
T Consensus         2 M~~~rvgiiG~G~~~~~~~~~~l~-~~~~~lvav~d~~~~~~~~~a~------~~~~~--------------------~~   54 (336)
T 2p2s_A            2 MKKIRFAAIGLAHNHIYDMCQQLI-DAGAELAGVFESDSDNRAKFTS------LFPSV--------------------PF   54 (336)
T ss_dssp             --CCEEEEECCSSTHHHHHHHHHH-HTTCEEEEEECSCTTSCHHHHH------HSTTC--------------------CB
T ss_pred             CCccEEEEECCChHHHHHhhhhhc-CCCcEEEEEeCCCHHHHHHHHH------hcCCC--------------------cc
Confidence            4568999999999996 5777774 5789999999973322 22111      11100                    00


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.  +.+++ ....++|+|+.|||.....+.+.+++++|.. |.+--|
T Consensus        55 ~~--~~~~l-l~~~~~D~V~i~tp~~~h~~~~~~al~aGkh-Vl~EKP   98 (336)
T 2p2s_A           55 AA--SAEQL-ITDASIDLIACAVIPCDRAELALRTLDAGKD-FFTAKP   98 (336)
T ss_dssp             CS--CHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTCE-EEECSS
T ss_pred             cC--CHHHH-hhCCCCCEEEEeCChhhHHHHHHHHHHCCCc-EEEeCC
Confidence            10  11111 0123789999999999999999999999964 444433

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.86  E-value=1.4e-05  Score=75.54  Aligned_cols=100  Identities=19%  Similarity=0.167  Sum_probs=59.2

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC-------CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCE
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD-------DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p-------~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      +++||||+|+|.+|+.+++.|.+++       +++|++|.++......  ..  ++.  ..|. ..  ...+ .+.    
T Consensus         5 ~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~--~~--~~~--~~~~-~~--~~~~-~~~----   70 (331)
T 3c8m_A            5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYN--ER--IDI--GKVI-SY--KEKG-SLD----   70 (331)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEEC--TT--CCH--HHHH-HH--HHTT-CGG----
T ss_pred             cEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhh--cc--cCh--HHHh-hh--hccC-Ccc----
Confidence            4599999999999999999998876       6999999987321100  00  000  0000 00  0000 000    


Q ss_pred             EEEEEe-cCCCCCCCccCCCccEEEecCCCc----cCHHHHHHHHhCCCc
Q 019445           78 PVAVFG-FRNPEEIPWAKTGAEYVVESTGVF----TDKDKAAAHLKGGAK  122 (341)
Q Consensus        78 ~i~v~~-~~~~~~~~w~~~~~DvV~~at~~~----~s~~~~~~~l~~G~k  122 (341)
                        .++. ..+++++-  +.++|+|++|||+.    ...+.+.+++++|..
T Consensus        71 --~~~~~~~d~~~ll--~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkh  116 (331)
T 3c8m_A           71 --SLEYESISASEAL--ARDFDIVVDATPASADGKKELAFYKETFENGKD  116 (331)
T ss_dssp             --GCCSEECCHHHHH--HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCE
T ss_pred             --cccCCCCCHHHHh--CCCCCEEEECCCCCCccchHHHHHHHHHHCCCe
Confidence              0000 00222221  13789999999996    567789999999974

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.84  E-value=5.3e-06  Score=81.39  Aligned_cols=97  Identities=16%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             ceeEEEEcc----CHHHHHHHHHHHcC-CCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            6 KIKIGINGF----GRIGRLVARVALQR-DDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         6 ~irV~I~G~----G~iG~~llr~l~~~-p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      ++||||+|+    |++|+..++.|.++ |.++|++|.|+..+. +.++      ..+|.-                +  +
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a------~~~g~~----------------~--~   75 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATI------QRLKLS----------------N--A   75 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHH------HHTTCT----------------T--C
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHH------HHcCCC----------------c--c
Confidence            489999999    99999999999999 899999999873221 1111      111100                0  0


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCC-----cEEEecCC
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVVISAP  129 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~-----k~V~lSa~  129 (341)
                      ..+.  +.+++- ...++|+|+.|||.....+.+.+++++|.     |.|.+--|
T Consensus        76 ~~~~--~~~~ll-~~~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP  127 (438)
T 3btv_A           76 TAFP--TLESFA-SSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWA  127 (438)
T ss_dssp             EEES--SHHHHH-HCSSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESS
T ss_pred             eeeC--CHHHHh-cCCCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCc
Confidence            1121  222221 12378999999999999999999999993     55665544

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.84  E-value=8.6e-06  Score=77.77  Aligned_cols=95  Identities=14%  Similarity=0.177  Sum_probs=60.5

Q ss_pred             CceeEEEEccCHHHH-HHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~G~iG~-~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .++||||+|+|.+|. .+++.+. +|+++|++|.|+.  .+....+   ...+|..                    ..+.
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~-~~~~~lvav~d~~--~~~a~~~---a~~~~~~--------------------~~~~   78 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLL-RAGARLAGFHEKD--DALAAEF---SAVYADA--------------------RRIA   78 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHH-HTTCEEEEEECSC--HHHHHHH---HHHSSSC--------------------CEES
T ss_pred             cCcEEEEECcCHHHHHHHHHHhh-cCCcEEEEEEcCC--HHHHHHH---HHHcCCC--------------------cccC
Confidence            468999999999996 4566655 5889999999973  2211110   1111100                    0111


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        79 --~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGk-hVl~EKP  120 (361)
T 3u3x_A           79 --TAEEI-LEDENIGLIVSAAVSSERAELAIRAMQHGK-DVLVDKP  120 (361)
T ss_dssp             --CHHHH-HTCTTCCEEEECCCHHHHHHHHHHHHHTTC-EEEEESC
T ss_pred             --CHHHH-hcCCCCCEEEEeCChHHHHHHHHHHHHCCC-eEEEeCC
Confidence              22221 112368999999999999999999999996 4555444

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.84  E-value=2e-05  Score=76.79  Aligned_cols=96  Identities=27%  Similarity=0.292  Sum_probs=63.4

Q ss_pred             CCceeEEEEccCH---HHHHHHHHHHcCCCcEEEE-eeCCCCCh-hhhhhhcccc--cccCcccCceeeecCCcceEECC
Q 019445            4 DKKIKIGINGFGR---IGRLVARVALQRDDVELVA-VNDPFIST-DYMTYMFKYD--SVHGQWKHNELKVKDEKTLLFGE   76 (341)
Q Consensus         4 ~~~irV~I~G~G~---iG~~llr~l~~~p~~elv~-i~~~~~~~-~~~a~ll~~d--s~~g~~~~~~v~~~~~~~l~i~g   76 (341)
                      |.++||||+|+|.   +|+..++.+...++++|++ |.|+..+. +..+..+...  ..|.                   
T Consensus        35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~-------------------   95 (417)
T 3v5n_A           35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYS-------------------   95 (417)
T ss_dssp             CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCS-------------------
T ss_pred             CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccC-------------------
Confidence            4568999999998   9999999998888899997 88762221 2222111111  1111                   


Q ss_pred             EEEEEEecCCCCCCCccC-----CCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           77 KPVAVFGFRNPEEIPWAK-----TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        77 ~~i~v~~~~~~~~~~w~~-----~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                               +.+++ ...     .++|+|+.|||.....+.+.+++++|.. |.+--|
T Consensus        96 ---------~~~~l-l~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkh-Vl~EKP  142 (417)
T 3v5n_A           96 ---------DFKEM-AIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIH-VICDKP  142 (417)
T ss_dssp             ---------CHHHH-HHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCE-EEEESS
T ss_pred             ---------CHHHH-HhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCe-EEEECC
Confidence                     11111 001     2689999999999999999999999964 555444

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.81  E-value=3.1e-05  Score=72.42  Aligned_cols=94  Identities=20%  Similarity=0.280  Sum_probs=63.5

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||+|+ |++|+..++.+.+. ++++++|.|+..+...      ....++.                    ...+. 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~~------~~~~~~~--------------------~~~~~-   54 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVGL------VDSFFPE--------------------AEFFT-   54 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGG------GGGTCTT--------------------CEEES-
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHHH------HHhhCCC--------------------CceeC-
Confidence            589999999 89999999999887 4899999997332211      1111110                    11111 


Q ss_pred             CCCCCCC-----c--cCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIP-----W--AKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~-----w--~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++.     |  ...++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        55 -~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~aGk-hVl~EKP  104 (312)
T 3o9z_A           55 -EPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRLGA-NALSEKP  104 (312)
T ss_dssp             -CHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             -CHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHHCCC-eEEEECC
Confidence             111110     0  13479999999999999999999999996 4555433

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.80  E-value=2.8e-05  Score=76.23  Aligned_cols=109  Identities=17%  Similarity=0.282  Sum_probs=64.6

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccC-cccCceeeecCC-cceE---ECCEEE
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG-QWKHNELKVKDE-KTLL---FGEKPV   79 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g-~~~~~~v~~~~~-~~l~---i~g~~i   79 (341)
                      .++||||+|+|++|+.+++.+.+.|+++|++|.|...+.  .....+  ..|| .+.   +...+. ..+.   -.+ ..
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~er--a~~~a~--~~yG~~~~---~~~~~~~~~i~~a~~~g-~~   93 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPN--TFKAIR--TAYGDEEN---AREATTESAMTRAIEAG-KI   93 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHH--HHHHHH--HHHSSSTT---EEECSSHHHHHHHHHTT-CE
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHH--HHHHHH--HhcCCccc---cccccchhhhhhhhccC-Cc
Confidence            469999999999999999999999999999999973322  111110  0012 011   000000 0000   000 01


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCc-cCHHHHHHHHhCCCcEE
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGAKKV  124 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~-~s~~~~~~~l~~G~k~V  124 (341)
                      .++.  |.+++ ....++|+|++|||.. ...+.+.+++++|..++
T Consensus        94 ~v~~--D~eeL-L~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv  136 (446)
T 3upl_A           94 AVTD--DNDLI-LSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLV  136 (446)
T ss_dssp             EEES--CHHHH-HTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             eEEC--CHHHH-hcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEE
Confidence            2222  33322 1134799999999874 56789999999998544

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.79  E-value=1.6e-05  Score=76.53  Aligned_cols=94  Identities=22%  Similarity=0.327  Sum_probs=64.4

Q ss_pred             ceeEEEEccC-HHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFG-RIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G-~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ++||||+|+| .+|+..++.|.++|+++|++|.|+.  .+....+   ...+|                     +..+. 
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~--~~~~~~~---a~~~g---------------------~~~~~-   54 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPN--EDVRERF---GKEYG---------------------IPVFA-   54 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSC--HHHHHHH---HHHHT---------------------CCEES-
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCC--HHHHHHH---HHHcC---------------------CCeEC-
Confidence            5899999999 9999999999999999999999872  2211110   01110                     01111 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        55 -~~~el-l~~~~vD~V~i~tp~~~H~~~~~~al~aGk-~Vl~EKP   96 (387)
T 3moi_A           55 -TLAEM-MQHVQMDAVYIASPHQFHCEHVVQASEQGL-HIIVEKP   96 (387)
T ss_dssp             -SHHHH-HHHSCCSEEEECSCGGGHHHHHHHHHHTTC-EEEECSC
T ss_pred             -CHHHH-HcCCCCCEEEEcCCcHHHHHHHHHHHHCCC-ceeeeCC
Confidence             22222 112368999999999999999999999995 4555444

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.77  E-value=2.2e-05  Score=75.90  Aligned_cols=99  Identities=22%  Similarity=0.189  Sum_probs=63.7

Q ss_pred             CCceeEEEEccCH---HHHHHHHHHHcCCCcEEEE-eeCCCCCh-hhhhhhcccc--cccCcccCceeeecCCcceEECC
Q 019445            4 DKKIKIGINGFGR---IGRLVARVALQRDDVELVA-VNDPFIST-DYMTYMFKYD--SVHGQWKHNELKVKDEKTLLFGE   76 (341)
Q Consensus         4 ~~~irV~I~G~G~---iG~~llr~l~~~p~~elv~-i~~~~~~~-~~~a~ll~~d--s~~g~~~~~~v~~~~~~~l~i~g   76 (341)
                      |.++||||+|+|.   +|+..++.+...++++|++ |.|+..+. +..+..+...  ..|..+.          .+    
T Consensus        10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~----------~l----   75 (398)
T 3dty_A           10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYL----------SM----   75 (398)
T ss_dssp             CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHH----------HH----
T ss_pred             cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHH----------HH----
Confidence            4569999999999   9999999999888899998 77762221 2222111111  1111111          00    


Q ss_pred             EEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        77 ~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                           ..  +....   ..++|+|+.|||.....+.+.+++++|. .|.+-
T Consensus        76 -----l~--~~~~~---~~~vD~V~i~tp~~~H~~~~~~al~aGk-hVl~E  115 (398)
T 3dty_A           76 -----FE--QEARR---ADGIQAVSIATPNGTHYSITKAALEAGL-HVVCE  115 (398)
T ss_dssp             -----HH--HHTTC---TTCCSEEEEESCGGGHHHHHHHHHHTTC-EEEEC
T ss_pred             -----Hh--ccccc---CCCCCEEEECCCcHHHHHHHHHHHHCCC-eEEEe
Confidence                 00  00000   1268999999999999999999999996 35443

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.75  E-value=4.7e-05  Score=71.41  Aligned_cols=94  Identities=23%  Similarity=0.200  Sum_probs=63.7

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||+|+ |++|+..++.+.+. .++++++.|+..+...      .+..++.                    ...+. 
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~~------~~~~~~~--------------------~~~~~-   54 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSVGI------IDSISPQ--------------------SEFFT-   54 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCGG------GGGTCTT--------------------CEEES-
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHHHH------HHhhCCC--------------------CcEEC-
Confidence            589999999 89999999999887 5899999987332211      1111110                    11111 


Q ss_pred             CCCCCCC-----c---cCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           85 RNPEEIP-----W---AKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        85 ~~~~~~~-----w---~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                       +.+++.     |   ...++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        55 -~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~aGk-hVl~EKP  105 (318)
T 3oa2_A           55 -EFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGC-DVICEKP  105 (318)
T ss_dssp             -SHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHHTTC-EEEECSS
T ss_pred             -CHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHHCCC-eEEEECC
Confidence             111110     0   13479999999999999999999999996 4555444

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=97.68  E-value=1.8e-05  Score=74.60  Aligned_cols=96  Identities=13%  Similarity=0.079  Sum_probs=62.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCC--hhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS--TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~--~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |+||||+|+|.+|+..++.+  +|+++|++|.|+...  .+..+...   ..+|                ++   ...+.
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~---~~~~----------------~~---~~~~~   57 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAI---SEMN----------------IK---PKKYN   57 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHH---HTTT----------------CC---CEECS
T ss_pred             ceEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHH---HHcC----------------CC---CcccC
Confidence            58999999988888888887  889999999987321  12221111   0011                00   01121


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.+++ ....++|+|+.|||.....+.+.+++++|.. |.+--|
T Consensus        58 --~~~~l-l~~~~vD~V~I~tp~~~H~~~~~~al~aGkh-Vl~EKP   99 (337)
T 3ip3_A           58 --NWWEM-LEKEKPDILVINTVFSLNGKILLEALERKIH-AFVEKP   99 (337)
T ss_dssp             --SHHHH-HHHHCCSEEEECSSHHHHHHHHHHHHHTTCE-EEECSS
T ss_pred             --CHHHH-hcCCCCCEEEEeCCcchHHHHHHHHHHCCCc-EEEeCC
Confidence              22222 1123689999999999999999999999964 554433

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.61  E-value=1.3e-05  Score=76.53  Aligned_cols=95  Identities=22%  Similarity=0.199  Sum_probs=60.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +|||.|+|+|++|+.+++.|.++.++.++.++.     +.+..+      .. +. .        .+.+        ...
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~~~~v~~~~~~~-----~~~~~~------~~-~~-~--------~~~~--------d~~   66 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKDEFDVYIGDVNN-----ENLEKV------KE-FA-T--------PLKV--------DAS   66 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTTSEEEEEESCH-----HHHHHH------TT-TS-E--------EEEC--------CTT
T ss_pred             ccEEEEECCCHHHHHHHHHHhcCCCeEEEEcCH-----HHHHHH------hc-cC-C--------cEEE--------ecC
Confidence            479999999999999999998877665444332     111111      00 00 0        1111        001


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      |++.+.=-..++|+|+.|+|.+.....++.++++|+..||+|-.
T Consensus        67 d~~~l~~~~~~~DvVi~~~p~~~~~~v~~~~~~~g~~yvD~s~~  110 (365)
T 3abi_A           67 NFDKLVEVMKEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFM  110 (365)
T ss_dssp             CHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTCEEEECCCC
T ss_pred             CHHHHHHHHhCCCEEEEecCCcccchHHHHHHhcCcceEeeecc
Confidence            11111000247899999999999889999999999999998754

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.57  E-value=8.9e-05  Score=69.40  Aligned_cols=91  Identities=18%  Similarity=0.152  Sum_probs=59.5

Q ss_pred             eeEEEEccCHHHHHH-HHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGFGRIGRLV-ARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~G~iG~~l-lr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +||||+|+|.+|+.+ ++.|.+ +.+++++|.|+.  .+....+   ...+|...                    .+.  
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~--~~~~~~~---~~~~g~~~--------------------~~~--   52 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTS--AERGAAY---ATENGIGK--------------------SVT--   52 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSC--HHHHHHH---HHHTTCSC--------------------CBS--
T ss_pred             CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCC--HHHHHHH---HHHcCCCc--------------------ccC--
Confidence            489999999999998 888888 889999999872  2211111   01111000                    000  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +.+++ ....++|+|+.|||.....+.+..++++|.. |++-
T Consensus        53 ~~~~~-l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~-v~~e   92 (332)
T 2glx_A           53 SVEEL-VGDPDVDAVYVSTTNELHREQTLAAIRAGKH-VLCE   92 (332)
T ss_dssp             CHHHH-HTCTTCCEEEECSCGGGHHHHHHHHHHTTCE-EEEC
T ss_pred             CHHHH-hcCCCCCEEEEeCChhHhHHHHHHHHHCCCe-EEEe
Confidence            11111 0113689999999999999999999999964 4443

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.48  E-value=0.00024  Score=68.19  Aligned_cols=91  Identities=19%  Similarity=0.243  Sum_probs=60.7

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD-DVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      .++||||+|+| .|+..++.+.+.| .+||++|.|+..+. +.++.      .||                     ++.+
T Consensus         6 ~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~------~~g---------------------v~~~   57 (372)
T 4gmf_A            6 PKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAH------AFG---------------------IPLY   57 (372)
T ss_dssp             -CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHH------HTT---------------------CCEE
T ss_pred             CCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHH------HhC---------------------CCEE
Confidence            36999999999 5999999998876 59999999973322 22221      111                     1122


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccC----HHHHHHHHhCCCcEEEecCC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTD----KDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s----~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .  +.+++   ..++|+|+-|||....    .+.+.+++++|.. |.+--|
T Consensus        58 ~--~~~~l---~~~~D~v~i~~p~~~h~~~~~~~a~~al~aGkh-Vl~EKP  102 (372)
T 4gmf_A           58 T--SPEQI---TGMPDIACIVVRSTVAGGAGTQLARHFLARGVH-VIQEHP  102 (372)
T ss_dssp             S--SGGGC---CSCCSEEEECCC--CTTSHHHHHHHHHHHTTCE-EEEESC
T ss_pred             C--CHHHH---hcCCCEEEEECCCcccchhHHHHHHHHHHcCCc-EEEecC
Confidence            2  34444   2378999999998877    7889999999974 444333

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.43  E-value=9.3e-05  Score=70.83  Aligned_cols=92  Identities=11%  Similarity=0.098  Sum_probs=59.0

Q ss_pred             CceeEEEEc-cCHHHHH-HH----HHHHcCCCcEEE---------EeeCCCCCh-hhhhhhcccccccCcccCceeeecC
Q 019445            5 KKIKIGING-FGRIGRL-VA----RVALQRDDVELV---------AVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKD   68 (341)
Q Consensus         5 ~~irV~I~G-~G~iG~~-ll----r~l~~~p~~elv---------~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~   68 (341)
                      .++||||+| +|++|+. .+    +.+.+.+.++++         +|.++..+. +.++.      .+|.-         
T Consensus         5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~------~~~~~---------   69 (383)
T 3oqb_A            5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAK------RFNIA---------   69 (383)
T ss_dssp             EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHH------HTTCC---------
T ss_pred             ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHH------HhCCC---------
Confidence            468999999 6999997 77    888777766544         677762221 11111      11100         


Q ss_pred             CcceEECCEEEEEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           69 EKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        69 ~~~l~i~g~~i~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                                 .++.  +.+++ ....++|+|+.|||.....+.+.+++++|.. |.+
T Consensus        70 -----------~~~~--~~~~l-l~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~-V~~  112 (383)
T 3oqb_A           70 -----------RWTT--DLDAA-LADKNDTMFFDAATTQARPGLLTQAINAGKH-VYC  112 (383)
T ss_dssp             -----------CEES--CHHHH-HHCSSCCEEEECSCSSSSHHHHHHHHTTTCE-EEE
T ss_pred             -----------cccC--CHHHH-hcCCCCCEEEECCCchHHHHHHHHHHHCCCe-EEE
Confidence                       0111  22221 0123689999999999999999999999964 444

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.42  E-value=0.00017  Score=63.85  Aligned_cols=94  Identities=18%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             ceeEEEEccCHHHHHHHHHH-HcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVA-LQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l-~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ..||+|+|+|.+|+.+++.+ .++ .++++++.|.  +++.          .|+              .++|..+  ...
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~--dp~k----------~g~--------------~i~gv~V--~~~  130 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDV--DPEK----------VGR--------------PVRGGVI--EHV  130 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEES--CTTT----------TTC--------------EETTEEE--EEG
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeC--CHHH----------Hhh--------------hhcCCee--ecH
Confidence            47999999999999999963 334 7999999885  2110          111              1223222  221


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~  130 (341)
                      .+.+++- .. ++|.|+.|+|+....+.+..++++|++.+.--.|.
T Consensus       131 ~dl~ell-~~-~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P~  174 (211)
T 2dt5_A          131 DLLPQRV-PG-RIEIALLTVPREAAQKAADLLVAAGIKGILNFAPV  174 (211)
T ss_dssp             GGHHHHS-TT-TCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             HhHHHHH-Hc-CCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCcc
Confidence            1232221 23 79999999999988889999999999877655554

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.41  E-value=0.00021  Score=64.87  Aligned_cols=80  Identities=24%  Similarity=0.309  Sum_probs=59.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      .+||+|+|+|.||+.++|.   + ++|++++.+. ..                   +        .+   |  +....  
T Consensus        12 ~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~~-k~-------------------g--------el---g--v~a~~--   52 (253)
T 1j5p_A           12 HMTVLIIGMGNIGKKLVEL---G-NFEKIYAYDR-IS-------------------K--------DI---P--GVVRL--   52 (253)
T ss_dssp             CCEEEEECCSHHHHHHHHH---S-CCSEEEEECS-SC-------------------C--------CC---S--SSEEC--
T ss_pred             cceEEEECcCHHHHHHHhc---C-CcEEEEEEec-cc-------------------c--------cc---C--ceeeC--
Confidence            3799999999999999998   5 7999998761 00                   1        11   1  11111  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      |.+++.   .++|+|++|.++..-.+++.++|++|+.+|..|
T Consensus        53 d~d~ll---a~pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S   91 (253)
T 1j5p_A           53 DEFQVP---SDVSTVVECASPEAVKEYSLQILKNPVNYIIIS   91 (253)
T ss_dssp             SSCCCC---TTCCEEEECSCHHHHHHHHHHHTTSSSEEEECC
T ss_pred             CHHHHh---hCCCEEEECCCHHHHHHHHHHHHHCCCCEEEcC
Confidence            455553   378999999999877788999999999877766

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=97.34  E-value=0.00099  Score=59.32  Aligned_cols=71  Identities=23%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +|-+|+|+ |++|+.+.+++ +.+++||++.-+..                     .        .           .  
T Consensus        13 ~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~---------------------~--------~-----------~--   49 (228)
T 1vm6_A           13 MKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVN---------------------G--------V-----------E--   49 (228)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETT---------------------E--------E-----------E--
T ss_pred             ceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCC---------------------C--------c-----------c--
Confidence            68999999 99999998875 56679998886540                     0        0           0  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +.       .++||++|.|-.....+.++.+++.|.+.|+-|
T Consensus        50 ~l-------~~~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGT   84 (228)
T 1vm6_A           50 EL-------DSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGT   84 (228)
T ss_dssp             EC-------SCCSEEEECSCGGGHHHHHHHHHHHTCEEEECC
T ss_pred             cc-------cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeC
Confidence            11       157999999988899999999999999877655

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.32  E-value=0.00029  Score=62.50  Aligned_cols=95  Identities=14%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             ceeEEEEccCHHHHHHHHH-HHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARV-ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~-l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ..||+|+|+|.+|+.+++. ...++.++++++.|.  +++.          .|+              .++|.++  ...
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~--dp~k----------~g~--------------~i~gv~V--~~~  136 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDI--NESK----------IGT--------------EVGGVPV--YNL  136 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEES--CTTT----------TTC--------------EETTEEE--EEG
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeC--CHHH----------HHh--------------HhcCCee--ech
Confidence            4689999999999999994 445667999999885  2210          111              1223222  221


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK  131 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~  131 (341)
                      .+.+++-  ... |+|+.|+|.....+.+..++++|++.+.--+|..
T Consensus       137 ~dl~eli--~~~-D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~~  180 (215)
T 2vt3_A          137 DDLEQHV--KDE-SVAILTVPAVAAQSITDRLVALGIKGILNFTPAR  180 (215)
T ss_dssp             GGHHHHC--SSC-CEEEECSCHHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             hhHHHHH--HhC-CEEEEecCchhHHHHHHHHHHcCCCEEEEcCcee
Confidence            1222221  123 9999999998888999999999998777666643

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.32  E-value=8.9e-05  Score=71.94  Aligned_cols=146  Identities=14%  Similarity=0.124  Sum_probs=79.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +||+|+|+|++|+.+++.|.+++++ ..+.+.++..+. +.++..+.  ...+           . .+..    + ...-
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~--~~~~-----------~-~~~~----~-~~D~   62 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIK--AKGY-----------G-EIDI----T-TVDA   62 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHH--HTTC-----------C-CCEE----E-ECCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhh--hhcC-----------C-ceEE----E-EecC
Confidence            5899999999999999999999875 344555552211 22211110  0000           0 0000    0 0000


Q ss_pred             CCCCCCC--ccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CCCeeeeccC---ccccC-CCCcEEeCCCC
Q 019445           85 RNPEEIP--WAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVN---EKEYK-PELDIVSNASC  157 (341)
Q Consensus        85 ~~~~~~~--w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~~~~V~Gvn---~~~~~-~~~~iIsnp~C  157 (341)
                      .+++.+.  ....++|+||.|+|.+.....+...+++|+..+|++.... +...+.|...   .+..+ .+..++.++||
T Consensus        63 ~d~~~l~~~l~~~~~DvVin~ag~~~~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~  142 (405)
T 4ina_A           63 DSIEELVALINEVKPQIVLNIALPYQDLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGF  142 (405)
T ss_dssp             TCHHHHHHHHHHHCCSEEEECSCGGGHHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBT
T ss_pred             CCHHHHHHHHHhhCCCEEEECCCcccChHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCC
Confidence            0111110  0001389999999998888888889999999888643221 1112223221   11111 14678999999


Q ss_pred             ccceecchhHHHhh
Q 019445          158 TTNCLAPLAKVIHD  171 (341)
Q Consensus       158 ~tt~Lapllk~L~~  171 (341)
                      .+.....++..+.+
T Consensus       143 ~PG~~~l~a~~~~~  156 (405)
T 4ina_A          143 DPGVTNVFCAYAQK  156 (405)
T ss_dssp             TTBHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHH
Confidence            88774333444333

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=97.10  E-value=0.00098  Score=63.58  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC---CcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD---DVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p---~~elv~i~~~   39 (341)
                      .++||||+|+|.+|+.+++.|.+++   ++++++|.+.
T Consensus         3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~   40 (358)
T 1ebf_A            3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA   40 (358)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred             ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            4689999999999999999999876   6999999885

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=97.03  E-value=0.00027  Score=68.02  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=30.6

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEee
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDD-VELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~   37 (341)
                      |++  |+||+|+|+ |.||+.+++.+.+||+ ++++++.
T Consensus         1 m~~--m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~   37 (388)
T 1r0k_A            1 MSQ--PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALT   37 (388)
T ss_dssp             -CC--CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred             CCC--ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEE
Confidence            555  379999999 9999999999999997 9999983

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.99  E-value=0.00049  Score=60.84  Aligned_cols=97  Identities=16%  Similarity=0.279  Sum_probs=64.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHH-cCCCcEEEEeeCCCCChhhhhhhcccccccCc-ccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVAL-QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQ-WKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~-~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~-~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +.||+|+|+|..|+.+++.+. ++..++++++-|.  +++.         ..|+ .              ++|  ++++.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~--dp~~---------kiG~~~--------------i~G--vpV~~  136 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDL--DSND---------LVGKTT--------------EDG--IPVYG  136 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEEC--TTST---------TTTCBC--------------TTC--CBEEE
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeC--Cchh---------ccCcee--------------ECC--eEEeC
Confidence            479999999999999998753 3457999999875  2110         1121 1              112  12222


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~  130 (341)
                      ..+.+++- ...++|+++.|+|.....+.+..+.++|+|-+.=-+|.
T Consensus       137 ~~dL~~~v-~~~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFap~  182 (212)
T 3keo_A          137 ISTINDHL-IDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPV  182 (212)
T ss_dssp             GGGHHHHC--CCSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECSSS
T ss_pred             HHHHHHHH-HHcCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCCc
Confidence            11222110 12479999999999988889999999999988755554

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.90  E-value=0.0033  Score=51.56  Aligned_cols=84  Identities=19%  Similarity=0.289  Sum_probs=59.9

Q ss_pred             ceeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      ..+|||+|+    |.+|+.+++.|.+.. +++..+|-. .  +         .                   +.|  +++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G-~~V~~vnp~-~--~---------~-------------------i~G--~~~   59 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPN-Y--D---------E-------------------IEG--LKC   59 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT-C--S---------E-------------------ETT--EEC
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCC-CEEEEeCCC-C--C---------e-------------------ECC--eee
Confidence            578999999    999999999998875 677666532 0  0         1                   112  122


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                      +.  ++++++   ..+|+|+.|+|.....+.+.+++++|++.+++..
T Consensus        60 ~~--s~~el~---~~vDlvii~vp~~~v~~v~~~~~~~g~~~i~~~~  101 (138)
T 1y81_A           60 YR--SVRELP---KDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQP  101 (138)
T ss_dssp             BS--SGGGSC---TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             cC--CHHHhC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            21  344443   3689999999987777888888889999887764

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.82  E-value=0.0016  Score=60.23  Aligned_cols=88  Identities=23%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ++||+|+|+ |++|+.+++.+.+++ +++++..++...++         .                   +.|  ++++. 
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g-~~~V~~V~p~~~g~---------~-------------------~~G--~~vy~-   54 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYG-TKMVGGVTPGKGGT---------T-------------------HLG--LPVFN-   54 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECTTCTTC---------E-------------------ETT--EEEES-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCcccc---------e-------------------eCC--eeccC-
Confidence            579999999 999999999998874 78776655511100         0                   111  22332 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE-ec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV-IS  127 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~-lS  127 (341)
                       +.++++- ..++|+++.|+|.....+.+.+++++|++.++ ++
T Consensus        55 -sl~el~~-~~~~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi~t   96 (288)
T 2nu8_A           55 -TVREAVA-ATGATASVIYVPAPFCKDSILEAIDAGIKLIITIT   96 (288)
T ss_dssp             -SHHHHHH-HHCCCEEEECCCGGGHHHHHHHHHHTTCSEEEECC
T ss_pred             -CHHHHhh-cCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEEC
Confidence             2222210 12689999999999999999999999999744 44

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.81  E-value=0.004  Score=58.16  Aligned_cols=35  Identities=17%  Similarity=0.100  Sum_probs=26.5

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      ++++||+|+|+|.+|+.+++.|.+.... +|+. .|+
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~-~dr   66 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYG-YDI   66 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEE-ECS
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEE-EEC
Confidence            3457999999999999999999876522 5544 454

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.65  E-value=0.0046  Score=51.02  Aligned_cols=84  Identities=20%  Similarity=0.162  Sum_probs=60.4

Q ss_pred             ceeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      +.+|+|+|+    |++|..+++.|.++. +++..++-. .           ++                   +.|  +++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G-~~v~~Vnp~-~-----------~~-------------------i~G--~~~   67 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPK-Y-----------EE-------------------VLG--RKC   67 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT-C-----------SE-------------------ETT--EEC
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCC-CEEEEECCC-C-----------Ce-------------------ECC--eec
Confidence            468999999    799999999998876 677777532 0           01                   112  122


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                      +.  ++++++   ..+|+|+.|+|.....+.+.++.++|++.+++..
T Consensus        68 y~--sl~~l~---~~vDlvvi~vp~~~~~~vv~~~~~~gi~~i~~~~  109 (144)
T 2d59_A           68 YP--SVLDIP---DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQY  109 (144)
T ss_dssp             BS--SGGGCS---SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEECT
T ss_pred             cC--CHHHcC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEECC
Confidence            21  334443   3689999999998888888889999999887763

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.65  E-value=0.00073  Score=61.77  Aligned_cols=32  Identities=16%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |+||||+|+|.+|..+++.|.++  ++++.+.++
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~--~~v~~v~~~   33 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR--YEIGYILSR   33 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC------CCCEECS
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc--CcEEEEEeC
Confidence            36899999999999999988766  566556555

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.56  E-value=0.0035  Score=54.54  Aligned_cols=35  Identities=34%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |+.|  +||.|.|+ |++|+.+++.|.++. .+++++..
T Consensus         1 M~~m--~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r   36 (227)
T 3dhn_A            1 MEKV--KKIVLIGASGFVGSALLNEALNRG-FEVTAVVR   36 (227)
T ss_dssp             --CC--CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECS
T ss_pred             CCCC--CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEc
Confidence            6553  58999999 999999999999986 67777643

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.46  E-value=0.0041  Score=50.04  Aligned_cols=84  Identities=18%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             ceeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      +.+|||+|+    ++.|..+++.|.++. +++.+||-.            ++..                   .|.  +.
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~g-~~V~pVnP~------------~~~i-------------------~G~--~~   49 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSHG-HEFIPVGRK------------KGEV-------------------LGK--TI   49 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHT-CCEEEESSS------------CSEE-------------------TTE--EC
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHCC-CeEEEECCC------------CCcC-------------------CCe--ec
Confidence            458999999    679999999999886 588898743            1121                   121  11


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.  +.++++   . +|+|+.++|.....+.++++.+.|+|.|+++.-
T Consensus        50 y~--sl~dlp---~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~~G   91 (122)
T 3ff4_A           50 IN--ERPVIE---G-VDTVTLYINPQNQLSEYNYILSLKPKRVIFNPG   91 (122)
T ss_dssp             BC--SCCCCT---T-CCEEEECSCHHHHGGGHHHHHHHCCSEEEECTT
T ss_pred             cC--ChHHCC---C-CCEEEEEeCHHHHHHHHHHHHhcCCCEEEECCC
Confidence            21  455664   4 899999999998888899999999999888743

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.43  E-value=0.0076  Score=49.75  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             ceeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      +.+|||+|+    |.+|..+++.|.+.. +++..+|-. ..++         .                   +.|  +++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G-~~v~~vnp~-~~g~---------~-------------------i~G--~~~   60 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQG-YHVIPVSPK-VAGK---------T-------------------LLG--QQG   60 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHT-CCEEEECSS-STTS---------E-------------------ETT--EEC
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCC-CEEEEeCCc-cccc---------c-------------------cCC--eec
Confidence            468999999    889999999998776 576666532 1000         0                   112  122


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                      +.  ++++++   ..+|+|+.|+|.....+.+..++++|++.+++..
T Consensus        61 ~~--sl~el~---~~~Dlvii~vp~~~v~~v~~~~~~~g~~~i~i~~  102 (145)
T 2duw_A           61 YA--TLADVP---EKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQL  102 (145)
T ss_dssp             CS--STTTCS---SCCSEEECCSCSTHHHHHHHHHHHHTCCEEECCT
T ss_pred             cC--CHHHcC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcC
Confidence            22  455553   3789999999988778888888889998888753

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.43  E-value=0.0014  Score=57.89  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=28.0

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +|+||+|+|+|.+|..+++.|.+.. .+++.+.++
T Consensus        22 ~mmkI~IIG~G~mG~~la~~l~~~g-~~V~~v~~r   55 (220)
T 4huj_A           22 SMTTYAIIGAGAIGSALAERFTAAQ-IPAIIANSR   55 (220)
T ss_dssp             GSCCEEEEECHHHHHHHHHHHHHTT-CCEEEECTT
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEECC
Confidence            4579999999999999999998775 577665665

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.30  E-value=0.0069  Score=54.55  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=27.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||+|+|+|.+|+.+++.|.+.. ++++.+.++
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g-~~~v~~~~~   42 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKG-FRIVQVYSR   42 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHT-CCEEEEECS
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCC-CeEEEEEeC
Confidence            469999999999999999988764 566677665

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.25  E-value=0.0065  Score=55.48  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=27.6

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |+.| |+||+|+|+ |.+|+.+++.|.++. .+++ +.++
T Consensus         7 ~~~m-mm~I~iIG~tG~mG~~la~~l~~~g-~~V~-~~~r   43 (286)
T 3c24_A            7 NDVG-PKTVAILGAGGKMGARITRKIHDSA-HHLA-AIEI   43 (286)
T ss_dssp             CSCC-CCEEEEETTTSHHHHHHHHHHHHSS-SEEE-EECC
T ss_pred             cccc-CCEEEEECCCCHHHHHHHHHHHhCC-CEEE-EEEC
Confidence            4443 469999999 999999999998875 5765 4444

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.23  E-value=0.0071  Score=55.20  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=26.4

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRD-DVELVAVNDP   39 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~   39 (341)
                      |+++||+|+|+|.+|..+++.|.++. ..++.. .++
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~-~d~   39 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVG-YNR   39 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEE-ECS
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEE-EcC
Confidence            34579999999999999999988653 356544 444

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.17  E-value=0.029  Score=50.40  Aligned_cols=33  Identities=12%  Similarity=0.174  Sum_probs=27.7

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||+||.|.|+|++|+.+++.|.++. .+++++..
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~~g-~~V~~~~r   36 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAPQG-WRIIGTSR   36 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGGGT-CEEEEEES
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHCC-CEEEEEEc
Confidence            4579999999999999999999875 67777754

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=96.15  E-value=0.012  Score=55.89  Aligned_cols=110  Identities=14%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcce--EECCEEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTL--LFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l--~i~g~~i~v~   82 (341)
                      +.||+|+|+ |.||...++.+.+|+.++++++... .+.+.++...+  ...+++    +-+.+....  ..  + ....
T Consensus         3 ~k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~-~n~~~l~~q~~--~f~p~~----v~v~~~~~~~~~l--~-~~~~   72 (376)
T 3a06_A            3 ERTLVILGATGSIGTQTLDVLKKVKGIRLIGISFH-SNLELAFKIVK--EFNVKN----VAITGDVEFEDSS--I-NVWK   72 (376)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEES-SCHHHHHHHHH--HHTCCE----EEECSSCCCCCSS--S-EEEE
T ss_pred             cceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEcc-CCHHHHHHHHH--HcCCCE----EEEccHHHHHHHH--H-HHcc
Confidence            378999999 9999999999999978999999543 33333322211  001111    000000000  00  0 0000


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .+....++- ...++|+|+.|++.+...+-.-.++++|. .|.+.
T Consensus        73 G~~~l~el~-~~~~~D~Vv~AivG~aGL~ptlaAi~aGK-~vaLA  115 (376)
T 3a06_A           73 GSHSIEEML-EALKPDITMVAVSGFSGLRAVLASLEHSK-RVCLA  115 (376)
T ss_dssp             STTHHHHHH-HHHCCSEEEECCCSTTHHHHHHHHHHHCS-EEEEC
T ss_pred             CHHHHHHHh-cCCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEe
Confidence            000000110 01368999999999998888888899995 45553

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.12  E-value=0.012  Score=51.79  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=28.1

Q ss_pred             CCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         4 ~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |+|++|.|.|+ |.+|+.+++.|+++...+++.+.
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~   55 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFA   55 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEE
Confidence            45678999999 99999999999988756776664

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.04  E-value=0.0072  Score=49.60  Aligned_cols=88  Identities=11%  Similarity=0.019  Sum_probs=60.8

Q ss_pred             ceeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      +.+|+|+|+    |..|..+++.|.++. +++..+|-. ..         .+.                   +.|  +++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G-~~v~~vnp~-~~---------~~~-------------------i~G--~~~   60 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPR-FQ---------GEE-------------------LFG--EEA   60 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGG-GT---------TSE-------------------ETT--EEC
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCC-CEEEEeCCC-cc---------cCc-------------------CCC--EEe
Confidence            358999999    799999999998876 677666532 00         011                   112  122


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~  130 (341)
                      +.  +.++++   ..+|+++.|+|.....+.+.++.+.|+|.+++.+..
T Consensus        61 ~~--sl~el~---~~vDlavi~vp~~~~~~v~~~~~~~gi~~i~~~~g~  104 (140)
T 1iuk_A           61 VA--SLLDLK---EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGI  104 (140)
T ss_dssp             BS--SGGGCC---SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTC
T ss_pred             cC--CHHHCC---CCCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            21  334443   378999999999877788888889999988887543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.98  E-value=0.0067  Score=55.75  Aligned_cols=37  Identities=27%  Similarity=0.236  Sum_probs=26.7

Q ss_pred             CCCCC-ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            1 MAGDK-KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         1 ~~~~~-~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |+.+. |.+|.|.|+ |.+|+.+++.|+++. .++.++..
T Consensus         5 m~~~~m~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R   43 (318)
T 2r6j_A            5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTR   43 (318)
T ss_dssp             ----CCCCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEEC
T ss_pred             ccccCCCCeEEEECCCchHHHHHHHHHHHCC-CcEEEEEC
Confidence            44432 358999999 999999999999876 56666653

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=95.95  E-value=0.0075  Score=55.67  Aligned_cols=88  Identities=18%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ..||+|+|+ |+.|+.+++.+.++ .+++++..++...++                          .  +.|  ++++. 
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~--------------------------~--i~G--~~vy~-   54 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGM--------------------------E--VLG--VPVYD-   54 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTC--------------------------E--ETT--EEEES-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCc--------------------------e--ECC--EEeeC-
Confidence            479999999 99999999998887 477764444411100                          0  112  23332 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE-EEec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK-VVIS  127 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~-V~lS  127 (341)
                       +.++++- ..++|+++.++|.....+.+.+++++|++. |+++
T Consensus        55 -sl~el~~-~~~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t   96 (288)
T 1oi7_A           55 -TVKEAVA-HHEVDASIIFVPAPAAADAALEAAHAGIPLIVLIT   96 (288)
T ss_dssp             -SHHHHHH-HSCCSEEEECCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred             -CHHHHhh-cCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEEC
Confidence             2222210 126899999999999999999999999994 5555

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.95  E-value=0.01  Score=54.13  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=27.4

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |+.  |++|.|.|+ |.+|+.+++.|+++. .+++++..
T Consensus         1 M~~--~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R   36 (313)
T 1qyd_A            1 MDK--KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFR   36 (313)
T ss_dssp             -CC--CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECC
T ss_pred             CCC--CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEEC
Confidence            654  358999999 999999999999876 57766643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.95  E-value=0.0071  Score=48.41  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=25.1

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |..+++.+|.|+|+|.+|+.+++.|.+.. .+++.+.
T Consensus         1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~g-~~v~~~d   36 (144)
T 2hmt_A            1 MGRIKNKQFAVIGLGRFGGSIVKELHRMG-HEVLAVD   36 (144)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTT-CCCEEEE
T ss_pred             CCCCcCCcEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            54444568999999999999999998765 4555553

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.83  E-value=0.018  Score=47.47  Aligned_cols=30  Identities=37%  Similarity=0.499  Sum_probs=25.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|.|+|+|++|+.+++.|.... .+++.+.
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g-~~V~vid   49 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSG-HSVVVVD   49 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            68999999999999999998775 5776664

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.78  E-value=0.015  Score=54.35  Aligned_cols=39  Identities=23%  Similarity=0.191  Sum_probs=26.9

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |..|+++||+|+|+|.+|..++..|..++.+.-+.+.|.
T Consensus         1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di   39 (317)
T 3d0o_A            1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDL   39 (317)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            656667899999999999999988887653333344454

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=95.65  E-value=0.027  Score=45.37  Aligned_cols=92  Identities=17%  Similarity=0.137  Sum_probs=57.2

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      .+.|+.|+|+|..|+.+++.+.+++.++++++.|.  +..          ..|.              .+.|  ++++..
T Consensus         3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~--~~~----------~~g~--------------~i~g--~pV~g~   54 (141)
T 3nkl_A            3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDD--DRK----------KHKT--------------TMQG--ITIYRP   54 (141)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECS--CGG----------GTTC--------------EETT--EEEECG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEEC--Ccc----------cCCC--------------EecC--eEEECH
Confidence            35789999999999999999998888999999875  111          0110              0122  223320


Q ss_pred             CCCCCCCccCCCccEEEecCCCccC---HHHHHHHHhCCCcEEE
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTD---KDKAAAHLKGGAKKVV  125 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s---~~~~~~~l~~G~k~V~  125 (341)
                      .+..++ ....++|.|+.|.|....   .+.+..+.+.|+++..
T Consensus        55 ~~l~~~-~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~   97 (141)
T 3nkl_A           55 KYLERL-IKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLT   97 (141)
T ss_dssp             GGHHHH-HHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHHH-HHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            011110 011368999999997544   4555666778886544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.60  E-value=0.05  Score=46.94  Aligned_cols=30  Identities=30%  Similarity=0.373  Sum_probs=26.2

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||.|.|+ |.+|+.+++.|.++. .+++++..
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R   32 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGAR   32 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSS-CEEEEEES
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEEC
Confidence            7999999 999999999999886 67777754

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.58  E-value=0.015  Score=52.51  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=26.3

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||.|.|+ |.+|+.+++.|.+.+..+++++..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R   33 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVR   33 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEES
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEEC
Confidence            7999999 999999999998875567777754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.50  E-value=0.014  Score=53.07  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=26.5

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |+.  |++|.|.|+ |.+|+.+++.|++++ .+++++.
T Consensus         1 M~~--~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~   35 (308)
T 1qyc_A            1 MGS--RSRILLIGATGYIGRHVAKASLDLG-HPTFLLV   35 (308)
T ss_dssp             -CC--CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCC--CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEE
Confidence            654  358999999 999999999999876 5666654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.38  E-value=0.02  Score=52.73  Aligned_cols=32  Identities=28%  Similarity=0.464  Sum_probs=25.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||+|+|+|++|..+.+.|.+.. .++... ++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G-~~V~~~-dr   38 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAG-LSTWGA-DL   38 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CeEEEE-EC
Confidence            469999999999999999998875 565544 44

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.0099  Score=58.61  Aligned_cols=97  Identities=11%  Similarity=0.112  Sum_probs=56.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +.||.|+|+|.+|+.+++.|.+++.++++.+ ++  +.+....+..  . .+ ..          .       + ...-.
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~-~R--~~~ka~~la~--~-~~-~~----------~-------~-~~D~~   77 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVA-CR--TLANAQALAK--P-SG-SK----------A-------I-SLDVT   77 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTTEEEEEE-ES--SHHHHHHHHG--G-GT-CE----------E-------E-ECCTT
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCCCeEEEE-EC--CHHHHHHHHH--h-cC-Cc----------E-------E-EEecC
Confidence            4689999999999999999999866776544 44  1211111110  0 00 00          0       0 00000


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +.+.+.-...++|+|+.|+|.+.........+++|...++++
T Consensus        78 d~~~l~~~l~~~DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A           78 DDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             CHHHHHHHHHTSSEEEECSCGGGHHHHHHHHHHHTCEEEECS
T ss_pred             CHHHHHHHHcCCCEEEECCchhhhHHHHHHHHhcCCEEEEee
Confidence            111110001378999999998876666677788888666654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.23  E-value=0.016  Score=54.19  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=24.7

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      |+++||+|+|+|.+|..+.+.|.+.. .++..+
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~~g-~~V~~~   33 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLALKG-QSVLAW   33 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            34579999999999999999988765 565544

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.19  E-value=0.032  Score=47.24  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=26.4

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ++|.|.|+ |++|+.+++.|.++. .+++.+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r   35 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVR   35 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEe
Confidence            58999999 999999999999876 67777653

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=95.14  E-value=0.03  Score=51.83  Aligned_cols=89  Identities=19%  Similarity=0.218  Sum_probs=59.3

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +.||+|+|+ |+.|+.+++.+.++. +++++..++...++         .                   +.|  ++++. 
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g-~~~v~~VnP~~~g~---------~-------------------i~G--~~vy~-   60 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYG-TKVVAGVTPGKGGS---------E-------------------VHG--VPVYD-   60 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECTTCTTC---------E-------------------ETT--EEEES-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCC-CcEEEEeCCCCCCc---------e-------------------ECC--EeeeC-
Confidence            468999999 999999999998874 77654333411100         0                   112  23332 


Q ss_pred             CCCCCCCccCCC-ccEEEecCCCccCHHHHHHHHhCCCc-EEEecC
Q 019445           85 RNPEEIPWAKTG-AEYVVESTGVFTDKDKAAAHLKGGAK-KVVISA  128 (341)
Q Consensus        85 ~~~~~~~w~~~~-~DvV~~at~~~~s~~~~~~~l~~G~k-~V~lSa  128 (341)
                       +.++++- ..+ +|+++.++|.....+.+.+++++|++ .|++|.
T Consensus        61 -sl~el~~-~~~~~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~  104 (297)
T 2yv2_A           61 -SVKEALA-EHPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITE  104 (297)
T ss_dssp             -SHHHHHH-HCTTCCEEEECCCGGGHHHHHHHHHHTTCSEEEECCC
T ss_pred             -CHHHHhh-cCCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECC
Confidence             2223320 013 89999999999999999999999999 555564

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=95.12  E-value=0.022  Score=52.68  Aligned_cols=89  Identities=24%  Similarity=0.236  Sum_probs=59.3

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +.|++|+|+ |+.|+.+++.+.++. +++++-.++...++         .                   +.|  ++++. 
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~~g-~~~V~~VnP~~~g~---------~-------------------i~G--~~vy~-   60 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLECG-TKIVGGVTPGKGGQ---------N-------------------VHG--VPVFD-   60 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHHTT-CCEEEEECTTCTTC---------E-------------------ETT--EEEES-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCC-CeEEEEeCCCCCCc---------e-------------------ECC--EeeeC-
Confidence            368999999 999999999998874 66554333411100         0                   112  23332 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc-EEEecC
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK-KVVISA  128 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k-~V~lSa  128 (341)
                       +.++++- ..++|+++.++|.....+.+.+++++|++ .|+++.
T Consensus        61 -sl~el~~-~~~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~  103 (294)
T 2yv1_A           61 -TVKEAVK-ETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITE  103 (294)
T ss_dssp             -SHHHHHH-HHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred             -CHHHHhh-cCCCCEEEEccCHHHHHHHHHHHHHCCCCEEEEECC
Confidence             2233320 11689999999999999999999999999 455554

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.11  E-value=0.015  Score=54.04  Aligned_cols=33  Identities=27%  Similarity=0.457  Sum_probs=25.0

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      .++||||+|+|++|..+.+.|.++. . ++ .+.++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G-~~~V-~~~dr   56 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAG-AIDM-AAYDA   56 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHS-CCEE-EEECS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCC-CCeE-EEEcC
Confidence            3579999999999999999998765 4 44 44454

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=95.09  E-value=0.0035  Score=51.21  Aligned_cols=31  Identities=23%  Similarity=0.143  Sum_probs=26.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||+|+|+|.+|+.+++.|...+ ++ +.+.++
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g-~~-v~v~~r   52 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQ-YK-VTVAGR   52 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTT-CE-EEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CE-EEEEcC
Confidence            58999999999999999888754 78 666665

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.08  E-value=0.055  Score=46.32  Aligned_cols=30  Identities=40%  Similarity=0.519  Sum_probs=26.2

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||.|.|+ |.+|+.+++.|.++. .+++++..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R   32 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRG-HEVTAIVR   32 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             eEEEEcCCchhHHHHHHHHHhCC-CEEEEEEc
Confidence            7999999 999999999999886 67777754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.07  E-value=0.019  Score=49.78  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=25.7

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHH-cCCCcEEEEee
Q 019445            5 KKIKIGINGF-GRIGRLVARVAL-QRDDVELVAVN   37 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~-~~p~~elv~i~   37 (341)
                      ||.+|.|.|+ |.+|+.+++.|. +.. .+++.+.
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g-~~V~~~~   37 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTD-MHITLYG   37 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCC-CEEEEEE
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCC-ceEEEEe
Confidence            4445999999 999999999998 554 6777664

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.92  E-value=0.022  Score=51.33  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=26.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |+||.|.|+|++|+.+++.|.++. .+++++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g-~~V~~~~r   34 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQG-HEVTGLRR   34 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence            458999999999999999999875 57777753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=94.89  E-value=0.048  Score=49.28  Aligned_cols=32  Identities=19%  Similarity=0.200  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC-CcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRD-DVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i~~~   39 (341)
                      +||+|+|+|.+|..+++.|.+.. ..+++. .++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~-~d~   34 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYG-YDI   34 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEE-ECS
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEE-EeC
Confidence            48999999999999999998764 236544 444

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.81  E-value=0.023  Score=52.88  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=27.1

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||.|.|+ |++|+.+++.|++++ .++.++...
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~   43 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAH-RPTYILARP   43 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECC
Confidence            468999999 999999999999886 577776543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.78  E-value=0.018  Score=53.62  Aligned_cols=32  Identities=25%  Similarity=0.232  Sum_probs=25.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||||+|+|++|..+.+.|.+.. .++... ++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G-~~V~~~-dr   62 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAG-YALQVW-NR   62 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CCEEEEECccHHHHHHHHHHHhCC-CeEEEE-cC
Confidence            469999999999999999998875 565544 44

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.73  E-value=0.027  Score=51.11  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=27.3

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +++|.|.|+ |.+|+.+++.|.+++..+++++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R   38 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTR   38 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEES
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEc
Confidence            358999999 999999999998875467777753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.70  E-value=0.089  Score=49.22  Aligned_cols=34  Identities=35%  Similarity=0.357  Sum_probs=27.2

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +++||+|+|+|.+|..++.+|.....++ +.+.|.
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~-V~L~Di   46 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGD-VYMFDI   46 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEEC
Confidence            4469999999999999999888776447 556665

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.68  E-value=0.02  Score=52.13  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=24.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |+||+|+|+|.+|+.+++.|.+.. .++...+
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~~   33 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAG-HQLHVTT   33 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTT-CEEEECC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCC-CEEEEEc
Confidence            459999999999999999998765 5765443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.55  E-value=0.04  Score=50.28  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=25.6

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCC-c-EEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDD-V-ELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~-~-elv~i~~~   39 (341)
                      +++||+|+|+|.+|..+++.|.++.. . ++ .+.++
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V-~v~dr   37 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRI-CVTNR   37 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGE-EEECS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeE-EEEeC
Confidence            34689999999999999999987641 1 43 45555

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=94.49  E-value=0.066  Score=47.87  Aligned_cols=30  Identities=30%  Similarity=0.532  Sum_probs=24.4

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ||+|+|+|.+|..+.+.|.+.. +++.. .++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g-~~V~~-~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRG-VEVVT-SLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTT-CEEEE-CCT
T ss_pred             eEEEEechHHHHHHHHHHHHCC-CeEEE-eCC
Confidence            8999999999999999998765 56655 343

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.33  E-value=0.044  Score=51.98  Aligned_cols=24  Identities=33%  Similarity=0.380  Sum_probs=21.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      ++||+|+|+|.+|..+...|.+..
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G   52 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKG   52 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTT
T ss_pred             CCeEEEECccHHHHHHHHHHHHCC
Confidence            469999999999999999998764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=94.27  E-value=0.34  Score=42.10  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=27.2

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +.++|.|.|+ |.+|+.+++.|+++. .+++.+..
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R   53 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVR   53 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEEC
Confidence            3468999999 999999999999876 57777653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.21  E-value=0.033  Score=44.80  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=26.2

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |..+.|.+|.|+|+|++|+.+++.|.++. .+++.+.
T Consensus         1 m~~~~~~~v~I~G~G~iG~~la~~L~~~g-~~V~~id   36 (141)
T 3llv_A            1 MTENGRYEYIVIGSEAAGVGLVRELTAAG-KKVLAVD   36 (141)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEE
Confidence            44444568999999999999999998875 5666664

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.08  E-value=0.06  Score=50.08  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=28.3

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      |..++++||+|+|+|.+|..++..|...+-+ ||+. .|.
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l-~Di   39 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVL-IDA   39 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEE-ECS
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEE-EeC
Confidence            6666668999999999999999888765533 4444 454

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.07  E-value=0.04  Score=50.19  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=25.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +||+|+|+|++|..+.+.|.++. .+++ +.++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G-~~V~-~~dr   32 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAG-CSVT-IWNR   32 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC-CeEE-EEcC
Confidence            48999999999999999998876 5665 4454

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.07  E-value=0.081  Score=49.01  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=24.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++||+|+|+|.+|..+...|.+.. .++..+.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g-~~V~~~~   32 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTG-HCVSVVS   32 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCC-CeEEEEe
Confidence            369999999999999999988764 4665554

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.05  E-value=0.19  Score=46.71  Aligned_cols=33  Identities=33%  Similarity=0.385  Sum_probs=25.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      ++||+|+|+|++|..++-.|...+.+ ||+ +.|.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~-L~Di   40 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELV-LIDV   40 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEE-EECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence            47999999999999999888877633 444 3354

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.04  E-value=0.056  Score=53.20  Aligned_cols=100  Identities=10%  Similarity=0.122  Sum_probs=59.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc---EEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV---ELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~---elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +.||.|+|||-||+.++++|.+|+++   +++-+ |.......+...+..     ++.  .+        .++...+   
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~va-D~~~~~~~~~~~~g~-----~~~--~~--------~Vdadnv---   73 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTII-AAEGTKVDVAQQYGV-----SFK--LQ--------QITPQNY---   73 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEE-ESSCCSCCHHHHHTC-----EEE--EC--------CCCTTTH---
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEe-ccchhhhhHHhhcCC-----cee--EE--------eccchhH---
Confidence            36899999999999999999999876   45544 432221111110000     000  00        0000000   


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                       +...+.+   ..+.|+|+.+++...+...+..++++|+-.++.+.
T Consensus        74 -~~~l~aL---l~~~DvVIN~s~~~~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           74 -LEVIGST---LEENDFLIDVSIGISSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             -HHHTGGG---CCTTCEEEECCSSSCHHHHHHHHHHHTCEEEESSC
T ss_pred             -HHHHHHH---hcCCCEEEECCccccCHHHHHHHHHcCCCEEECCC
Confidence             0001111   11349999999999999999999999998888765

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=94.02  E-value=0.087  Score=48.39  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=26.5

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |||.|.|+ |++|+.+++.|.++. .+++++..
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   45 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHR   45 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEec
Confidence            58999999 999999999999875 57777653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.00  E-value=0.037  Score=50.67  Aligned_cols=32  Identities=28%  Similarity=0.268  Sum_probs=26.5

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |++|.|.|+ |.+|+.+++.|+++. .+++++.-
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R   36 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYAR   36 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEEC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEEC
Confidence            458999999 999999999999875 56666653

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=93.96  E-value=0.038  Score=51.73  Aligned_cols=38  Identities=26%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |..|+|+||.|.|+ |++|+.+++.|++++..+|+++..
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   57 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDM   57 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEES
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeC
Confidence            45566789999999 999999999999875578877754

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=93.95  E-value=0.058  Score=50.68  Aligned_cols=32  Identities=31%  Similarity=0.311  Sum_probs=26.4

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +++|.|.|+ |.+|+.+++.|.++. .+++++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R   37 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVH   37 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEC
Confidence            468999999 999999999998765 57776653

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=93.91  E-value=0.06  Score=50.44  Aligned_cols=30  Identities=30%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.|.... +++.+.+
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G-~~V~~~d  167 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALG-MHVIGVN  167 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCC-CEEEEEC
Confidence            58999999999999999998764 7877764

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.83  E-value=0.14  Score=47.12  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=24.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ..|||++|.|++|..+++.|.++. ++++. .|+
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G-~~V~v-~dr   36 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAG-YELVV-WNR   36 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTT-CEEEE-C--
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCC-CeEEE-EeC
Confidence            458999999999999999999876 56544 344

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=93.81  E-value=0.23  Score=48.63  Aligned_cols=103  Identities=16%  Similarity=0.239  Sum_probs=65.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhccccccc-CcccCceeeecCCcceEECCE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      .||+|-|+|.+|..+++.|.+.. ..+++|.|.+        .+.+.+..|+.+-... |... .   ..+  .+  .+ 
T Consensus       253 ~~vaVqG~GnVG~~~a~~L~~~G-akvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~-~---~~~--~~--~~-  322 (470)
T 2bma_A          253 QTAVVSGSGNVALYCVQKLLHLN-VKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIK-E---YLN--HS--ST-  322 (470)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHTT-CEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGG-G---GGG--TC--SS-
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHH-H---HHh--hc--CC-
Confidence            68999999999999999998875 8999998852        2333444444432221 2221 0   000  00  01 


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEecC-CCccCHHHHHHHHhCCCcEEE
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~at-~~~~s~~~~~~~l~~G~k~V~  125 (341)
                       ....   +++++ | ..++||.+-|. +...+.+.++.+++.+||.|+
T Consensus       323 -a~~v---~~~~~-~-~~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~  365 (470)
T 2bma_A          323 -AKYF---PNEKP-W-GVPCTLAFPCATQNDVDLDQAKLLQKNGCILVG  365 (470)
T ss_dssp             -CEEC---SSCCT-T-SSCCSEEEECSSTTCBCSHHHHHHHHTTCCEEE
T ss_pred             -cEEe---cCcCe-e-ecCccEEEeccccCcCCHHHHHHHHhcCcEEEE
Confidence             1111   22333 7 46899999976 456678899998888998665

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=93.81  E-value=0.092  Score=49.01  Aligned_cols=36  Identities=36%  Similarity=0.427  Sum_probs=27.8

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |+.  ++||+|+|+|.+|..+..+|...+.++ +.+.|.
T Consensus         1 m~~--~~kI~VIGaG~vG~~ia~~la~~g~~~-v~L~Di   36 (322)
T 1t2d_A            1 MAP--KAKIVLVGSGMIGGVMATLIVQKNLGD-VVLFDI   36 (322)
T ss_dssp             -CC--CCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECS
T ss_pred             CCC--CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence            554  359999999999999999998876557 566665

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.78  E-value=0.17  Score=49.97  Aligned_cols=32  Identities=22%  Similarity=0.305  Sum_probs=26.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~   37 (341)
                      ++||+|+|+|++|..+...|.++|.. +++.+.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D   50 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQ   50 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEE
Confidence            46999999999999999999988445 776653

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=93.77  E-value=0.44  Score=43.80  Aligned_cols=34  Identities=21%  Similarity=0.324  Sum_probs=27.2

Q ss_pred             CCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            4 DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         4 ~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +.+++|.|.|+ |++|+.+++.|.+.. .+++++..
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   59 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDN   59 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence            34578999999 999999999999875 57777653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.72  E-value=0.051  Score=49.91  Aligned_cols=30  Identities=30%  Similarity=0.428  Sum_probs=23.6

Q ss_pred             ceeEEEEc-cCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGING-FGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G-~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +.||+|+| +|.+|..+.+.|.+.. .++..+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G-~~V~~~   51 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASG-YPISIL   51 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTT-CCEEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCC-CeEEEE
Confidence            35899999 8999999999998764 344433

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.71  E-value=0.033  Score=50.57  Aligned_cols=30  Identities=30%  Similarity=0.298  Sum_probs=25.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++|.|.|+ |.+|+.+++.|+++. .+++++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   33 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKAG-NPTYALV   33 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHHT-CCEEEEE
T ss_pred             cEEEEECCCchHHHHHHHHHHhCC-CcEEEEE
Confidence            58999999 999999999998865 5666654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=93.66  E-value=0.098  Score=48.37  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=27.4

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ++||-|.|+ |++|+.+++.|+++. .+++++..
T Consensus        25 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   57 (351)
T 3ruf_A           25 PKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDN   57 (351)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence            479999999 999999999999876 67777754

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=93.65  E-value=0.042  Score=53.78  Aligned_cols=96  Identities=7%  Similarity=0.029  Sum_probs=51.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      +.+|.|+|+|.+|+.+++.|.+.. .+++ +.++  +.+....+.   ..++...          .       + .....
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G-~~V~-v~~R--~~~~a~~la---~~~~~~~----------~-------~-~~Dv~   57 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSG-IKVT-VACR--TLESAKKLS---AGVQHST----------P-------I-SLDVN   57 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTT-CEEE-EEES--SHHHHHHTT---TTCTTEE----------E-------E-ECCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCc-CEEE-EEEC--CHHHHHHHH---HhcCCce----------E-------E-EeecC
Confidence            468999999999999999999765 6754 4444  121111110   0011000          0       0 00000


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                      +++.+.-...++|+|+.|+|.+...+.....++.|...++.
T Consensus        58 d~~~l~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           58 DDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             CHHHHHHHHTTSSEEEECCC--CHHHHHHHHHHHTCEEEES
T ss_pred             CHHHHHHHHcCCcEEEECCccccchHHHHHHHhCCCeEEEe
Confidence            11111000137899999999876666666677777755544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.56  E-value=0.2  Score=43.35  Aligned_cols=28  Identities=21%  Similarity=0.286  Sum_probs=22.4

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELV   34 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv   34 (341)
                      ++||+|+|+|.+|..+.+.|.+.. .++.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g-~~V~   46 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAG-HEVT   46 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT-CEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEE
Confidence            468999999999999999987764 3443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=93.54  E-value=0.077  Score=48.64  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=25.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|+|+|+|.+|+.+++.+.... +++...+
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~d  185 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALG-AKVKVGA  185 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCC-CEEEEEE
Confidence            58999999999999999998775 5765554

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=93.37  E-value=0.18  Score=46.46  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=24.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |||+|+|+|.||..+.-+|..++.+.=+.+.|.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di   33 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            489999999999999888877665533344454

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.25  E-value=0.04  Score=47.98  Aligned_cols=30  Identities=30%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |||.|+|+|++|+.+++.|.+.. .+++.+.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g-~~v~vid   30 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRK-YGVVIIN   30 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            37999999999999999998764 5676665

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.19  E-value=0.1  Score=47.03  Aligned_cols=30  Identities=37%  Similarity=0.498  Sum_probs=24.5

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ||+|+|+|.+|..+++.|.+.. .+++.+ ++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g-~~V~~~-~~   31 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRG-HYLIGV-SR   31 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCC-CEEEEE-EC
Confidence            8999999999999999998765 465554 44

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=93.03  E-value=0.091  Score=49.07  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=20.9

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQR   28 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~   28 (341)
                      |+++||+|+|+|.+|..+.+.|.+.
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~   30 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGN   30 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhc
Confidence            3457999999999999999988764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.02  E-value=0.28  Score=45.60  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=24.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      |||+|+|+|.+|..++..|..++-+ +| .+.|.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el-~l~D~   33 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEV-VMVDI   33 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEE-EEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEE-EEEeC
Confidence            3899999999999999988877644 44 44454

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.96  E-value=0.36  Score=44.90  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=25.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||+|+|+|.+|..++-.|...+.+.-+.+.|.
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di   38 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV   38 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            4699999999999999888887664433344454

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=92.88  E-value=0.33  Score=43.49  Aligned_cols=29  Identities=24%  Similarity=0.303  Sum_probs=23.9

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ||+|+|+|.+|..+.+.|.+.. .++..++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g-~~V~~~~   30 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQG-HEVQGWL   30 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             eEEEECcCHHHHHHHHHHHhCC-CCEEEEE
Confidence            8999999999999999998765 4665553

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=92.87  E-value=0.35  Score=41.93  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=26.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~-elv~i~   37 (341)
                      ++|-|.|+ |.+|+.+++.|.++..+ +++.+.
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~   51 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIG   51 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEE
Confidence            58999999 99999999999988743 666664

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=92.74  E-value=0.38  Score=45.09  Aligned_cols=33  Identities=30%  Similarity=0.276  Sum_probs=25.4

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      ..||+|+|+|.+|..++..+...+-+ |+ .+.|.
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev-~L~Di   54 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEV-ALVDV   54 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEE-EEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeE-EEEEC
Confidence            36999999999999999988877643 44 44454

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.73  E-value=0.32  Score=44.74  Aligned_cols=30  Identities=33%  Similarity=0.389  Sum_probs=24.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++||+|+|+|.+|..+...|. .. .++..+.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g-~~V~~~~   31 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LY-HDVTVVT   31 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT-SEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cC-CceEEEE
Confidence            469999999999999999888 43 5665554

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=92.71  E-value=0.5  Score=43.48  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=24.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      +||+|+|+|.+|..++..|...+.+ +++ +.|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~-L~D~   33 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELV-LVDR   33 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence            3899999999999999988877533 444 4454

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.66  E-value=0.046  Score=51.34  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +||+|+|+|.+|+.+++.|.... ++++ +.++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G-~~V~-~~~~   47 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSG-VDVT-VGLR   47 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT-CCEE-EECC
T ss_pred             CEEEEECchHHHHHHHHHHHHCc-CEEE-EEEC
Confidence            58999999999999999998765 5654 3443

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.58  E-value=0.32  Score=44.74  Aligned_cols=32  Identities=34%  Similarity=0.467  Sum_probs=24.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCC-cEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDD-VELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~-~elv~i~~~   39 (341)
                      +||+|+|+|.+|..++..|.+..- -+++ +.|.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~-l~d~   34 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYV-FIDA   34 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEcC
Confidence            489999999999999998877641 2444 4344

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=92.42  E-value=0.12  Score=48.27  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=25.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.|.... +++.+.+
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~d  170 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFG-MKVLGVS  170 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             ceEEEEEECHHHHHHHHHHHhCC-CEEEEEc
Confidence            58999999999999999998775 7776664

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.37  E-value=0.099  Score=48.02  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=25.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|+|+|+|.+|+.+++.+.... +++...+
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G-~~V~~~d  187 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALG-ANVKVGA  187 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEEcccHHHHHHHHHHHHCC-CEEEEEE
Confidence            58999999999999999998775 5766554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.33  E-value=0.47  Score=43.50  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i   36 (341)
                      ++||+|+|+|.+|..+...|.....+ +++.+
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~   38 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLE   38 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEE
Confidence            46999999999999999988876533 55444

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=92.22  E-value=0.29  Score=46.00  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |++|.|.|+ |++|+.+++.|+++. .+++++..
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   61 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEG-HYVIASDW   61 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCC-CeEEEEEC
Confidence            468999999 999999999998875 57777653

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=92.10  E-value=0.19  Score=46.51  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=24.0

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +++||+|+|+|.+|..+...|.+.. .++..+
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G-~~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAG-HEVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCC-CeEEEE
Confidence            3579999999999999999998764 355555

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=92.04  E-value=0.17  Score=45.18  Aligned_cols=31  Identities=26%  Similarity=0.472  Sum_probs=25.7

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcC-CCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQR-DDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~-p~~elv~i~~   38 (341)
                      ||.|.|+ |.+|+.+++.|.++ +..+++++..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r   33 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVR   33 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEES
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEc
Confidence            5889999 99999999999986 3477777753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.00  E-value=0.16  Score=40.03  Aligned_cols=31  Identities=26%  Similarity=0.497  Sum_probs=25.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .++|+|+|+|++|+.+++.|.+.. .+++.+.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g-~~v~~~d   34 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKG-HDIVLID   34 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CeEEEEE
Confidence            358999999999999999998765 6766664

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=91.99  E-value=0.096  Score=46.67  Aligned_cols=31  Identities=13%  Similarity=0.182  Sum_probs=23.5

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ||+|+|+|.+|..+++.|.+....++ .+.++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v-~~~~r   32 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRI-YIANR   32 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEE-EEECS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeE-EEECC
Confidence            89999999999999998876541344 44454

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=91.93  E-value=0.49  Score=46.12  Aligned_cols=102  Identities=15%  Similarity=0.315  Sum_probs=62.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhcccc-cccCcccCceeeecCCcceEECCE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~d-s~~g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      .||+|=|+|.+|..+++.|.+.. ..++++.|..        .+.+.+..+.... +..|+.. .-. .+      . | 
T Consensus       236 k~vaVQG~GnVG~~aa~~L~e~G-akvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~-~~~-~~------~-g-  304 (450)
T 4fcc_A          236 MRVSVSGSGNVAQYAIEKAMEFG-ARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVA-DYA-KE------F-G-  304 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHH-HHH-HH------H-T-
T ss_pred             CEEEEeCCChHHHHHHHHHHhcC-CeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccc-ccc-cc------C-C-
Confidence            68999999999999999999875 7899987652        1223333322211 1111110 000 00      0 1 


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEec-CCCccCHHHHHHHHhCCCcEEE
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVES-TGVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~a-t~~~~s~~~~~~~l~~G~k~V~  125 (341)
                       ....   +++++ |. .++||.+=| ++...+.+.++.+...|+|.|.
T Consensus       305 -~~~~---~~~~i-~~-~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~Ia  347 (450)
T 4fcc_A          305 -LVYL---EGQQP-WS-VPVDIALPCATQNELDVDAAHQLIANGVKAVA  347 (450)
T ss_dssp             -CEEE---ETCCG-GG-SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEE
T ss_pred             -cEEe---cCccc-cc-CCccEEeeccccccccHHHHHHHHhcCceEEe
Confidence             1111   23333 64 689999987 5566788999998888998664

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=91.89  E-value=0.34  Score=45.69  Aligned_cols=25  Identities=20%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRD   29 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p   29 (341)
                      ..+||+|+|| |.||..|+-+|.+.+
T Consensus        23 ~~vKVaViGAaG~IG~~la~~la~~~   48 (345)
T 4h7p_A           23 SAVKVAVTGAAGQIGYALVPLIARGA   48 (345)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECcCcHHHHHHHHHHHhcc
Confidence            4589999999 999999988777654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=91.87  E-value=0.13  Score=48.62  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC
Q 019445            6 KIKIGINGFGRIGRLVARVALQR   28 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~   28 (341)
                      |+||+|+|+|.+|..+.+.|.+.
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~   43 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTN   43 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc
Confidence            46999999999999999988653

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=91.71  E-value=0.23  Score=45.99  Aligned_cols=87  Identities=24%  Similarity=0.186  Sum_probs=58.1

Q ss_pred             ceeEEEE-cc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGIN-GF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~-G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +.+++|+ |+ |..|+.+++.+.++. +++++..++...++                          .  +.|  ++++.
T Consensus        13 ~~siaVV~Gasg~~G~~~~~~l~~~G-~~~v~~VnP~~~g~--------------------------~--i~G--~~vy~   61 (305)
T 2fp4_A           13 KNTKVICQGFTGKQGTFHSQQALEYG-TNLVGGTTPGKGGK--------------------------T--HLG--LPVFN   61 (305)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEECTTCTTC--------------------------E--ETT--EEEES
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHCC-CcEEEEeCCCcCcc--------------------------e--ECC--eeeec
Confidence            3568888 99 999999999988875 67664433411100                          0  112  23332


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                        +.++++- ..++|+++.++|.....+.+.+++++|+|.+++
T Consensus        62 --sl~el~~-~~~vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~  101 (305)
T 2fp4_A           62 --TVKEAKE-QTGATASVIYVPPPFAAAAINEAIDAEVPLVVC  101 (305)
T ss_dssp             --SHHHHHH-HHCCCEEEECCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             --hHHHhhh-cCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence              2233320 126899999999999999999999999998553

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.44  E-value=0.19  Score=40.46  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=27.1

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ++.+|.|+|+|++|+.+++.|.++. .+++.+..
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g-~~v~vid~   38 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASD-IPLVVIET   38 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CCEEEEEC
Confidence            4568999999999999999998765 57777753

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=91.40  E-value=0.48  Score=44.20  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=25.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||+|+|+|.+|..++-.|...+.+.-+.+.|.
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di   42 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            4799999999999999888887664433344454

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=91.37  E-value=0.58  Score=45.70  Aligned_cols=86  Identities=21%  Similarity=0.191  Sum_probs=61.1

Q ss_pred             ceeEEEEccC----HHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGFG----RIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~G----~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      ..+|+|+|++    +.|..+++.|.+++.-.+..||-.            ++..                   .|  +++
T Consensus         8 p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~------------~~~i-------------------~G--~~~   54 (457)
T 2csu_A            8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK------------EEEV-------------------QG--VKA   54 (457)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS------------CSEE-------------------TT--EEC
T ss_pred             CCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCC------------CCeE-------------------CC--Eec
Confidence            5689999994    789999999988754677777632            0111                   12  223


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE-ecCC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV-ISAP  129 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~-lSa~  129 (341)
                      +.  +.++++   ..+|+++.++|.....+.+.++.++|+|.++ ++.-
T Consensus        55 y~--sl~~lp---~~~Dlavi~vp~~~~~~~v~e~~~~Gi~~vv~~s~G   98 (457)
T 2csu_A           55 YK--SVKDIP---DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAG   98 (457)
T ss_dssp             BS--STTSCS---SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred             cC--CHHHcC---CCCCEEEEecCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence            32  344453   3689999999999999999999999999655 5543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=91.35  E-value=0.11  Score=47.92  Aligned_cols=31  Identities=16%  Similarity=0.278  Sum_probs=23.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++||+|+|+|.+|..+...|.+.. .++..+.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g-~~V~~~~   32 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSG-EDVHFLL   32 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTS-CCEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC-CeEEEEE
Confidence            369999999999999999888754 3554443

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=91.32  E-value=0.22  Score=44.46  Aligned_cols=31  Identities=26%  Similarity=0.546  Sum_probs=26.0

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcC-CCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQR-DDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~-p~~elv~i~~   38 (341)
                      +|.|.|+ |++|+.+++.|.++ +..+++++..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r   34 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVR   34 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEES
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEc
Confidence            6899999 99999999999887 4477777753

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.32  E-value=0.72  Score=42.46  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=23.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCC-CcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRD-DVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p-~~elv~i   36 (341)
                      +||+|+|+|++|..++..|...+ ..+++.+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~   31 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLL   31 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEE
Confidence            38999999999999999888753 3455444

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=91.30  E-value=0.42  Score=46.59  Aligned_cols=103  Identities=13%  Similarity=0.253  Sum_probs=61.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------CChhhhhhhccccccc-CcccCceeeecCCcceEECCE
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------ISTDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGEK   77 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~i~g~   77 (341)
                      .||+|-|+|.+|..+++.|.+.. ..+++|.|.+        .|.+.+..+..+.... ++.. .-+   .  .  ..+ 
T Consensus       240 ~~VaVQG~GnVG~~aa~~L~e~G-akvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~-~~~---~--~--~~~-  309 (456)
T 3r3j_A          240 KKCLVSGSGNVAQYLVEKLIEKG-AIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLK-EYL---K--Y--SKT-  309 (456)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHT-CCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGG-GGG---G--T--CSS-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchh-hhh---h--c--CCC-
Confidence            68999999999999999998764 6788888752        1223332222121111 1111 000   0  0  001 


Q ss_pred             EEEEEecCCCCCCCccCCCccEEEec-CCCccCHHHHHHHHhCCCcEEE
Q 019445           78 PVAVFGFRNPEEIPWAKTGAEYVVES-TGVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        78 ~i~v~~~~~~~~~~w~~~~~DvV~~a-t~~~~s~~~~~~~l~~G~k~V~  125 (341)
                       ....   +++++ |. .++|+.+-| ++...+.+.++.+++.+||.|.
T Consensus       310 -a~~v---~~~~i-~~-~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~  352 (456)
T 3r3j_A          310 -AKYF---ENQKP-WN-IPCDIAFPCATQNEINENDADLFIQNKCKMIV  352 (456)
T ss_dssp             -CEEE---CSCCG-GG-SCCSEEEECSCTTCBCHHHHHHHHHHTCCEEE
T ss_pred             -ceEe---CCccc-cc-cCccEEEeCCCccchhhHHHHHHHhcCCeEEE
Confidence             0111   23343 64 589999987 5667788999988877888665

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.20  E-value=0.68  Score=42.83  Aligned_cols=32  Identities=41%  Similarity=0.559  Sum_probs=23.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      +||+|+|+|.+|..++..|...... +++. .|.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l-~D~   33 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVL-IDV   33 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEE-ECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEE-EeC
Confidence            3899999999999999988765422 4444 444

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=91.17  E-value=1.1  Score=40.68  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=26.5

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .++|-|.|+ |+||+.+++.|+++. .+++.+..
T Consensus        11 ~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r   43 (342)
T 1y1p_A           11 GSLVLVTGANGFVASHVVEQLLEHG-YKVRGTAR   43 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeC
Confidence            368999999 999999999999875 57766643

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=91.11  E-value=0.2  Score=48.62  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=29.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF   40 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~   40 (341)
                      .||+|.|+|.+|+.+++.|.+.. ..+++|.|.+
T Consensus       213 ~~vaVqG~GnVG~~~a~~L~~~G-akvVavsD~~  245 (421)
T 2yfq_A          213 AKIAVQGFGNVGTFTVKNIERQG-GKVCAIAEWD  245 (421)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT-CCEEECCBCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEEecC
Confidence            68999999999999999998875 8999999874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.06  E-value=0.18  Score=45.79  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=24.3

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +|+||+|+|+|.+|..+.+.|.+.. .++..+
T Consensus         2 ~~m~i~iiG~G~~G~~~a~~l~~~g-~~V~~~   32 (316)
T 2ew2_A            2 NAMKIAIAGAGAMGSRLGIMLHQGG-NDVTLI   32 (316)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCC-CcEEEE
Confidence            3469999999999999999998765 465554

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=91.05  E-value=0.24  Score=43.80  Aligned_cols=29  Identities=21%  Similarity=0.175  Sum_probs=24.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|-|+|+|.+|...++.|++.. .+++-|
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~G-A~VtVv   60 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEG-AAITVV   60 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGC-CCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            68999999999999999999875 455444

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=91.01  E-value=0.36  Score=49.12  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=28.2

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ++++|-|.|+ |++|+.+++.|.+++..+++++..
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r  348 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI  348 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEES
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEc
Confidence            4578999999 999999999999874468777753

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.97  E-value=1.2  Score=40.48  Aligned_cols=30  Identities=17%  Similarity=0.165  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .|+.|+|+|-+|+.+++.|.+.. .+|.-+|
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G-~~v~V~n  148 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQG-LQVSVLN  148 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            48999999999999999999877 6665554

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=90.96  E-value=1.1  Score=42.79  Aligned_cols=33  Identities=9%  Similarity=0.027  Sum_probs=27.0

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .+++|-|.|+ |.||+.+++.|.+.+ .+|+++.-
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~R  101 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIR  101 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEEE
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEEC
Confidence            3578999999 999999999997664 67777654

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=90.81  E-value=0.54  Score=45.85  Aligned_cols=102  Identities=16%  Similarity=0.297  Sum_probs=63.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCC--------C-Chhhhhhhccccccc-CcccCceeeecCCcceEECC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPF--------I-STDYMTYMFKYDSVH-GQWKHNELKVKDEKTLLFGE   76 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~--------~-~~~~~a~ll~~ds~~-g~~~~~~v~~~~~~~l~i~g   76 (341)
                      .+|+|-|+|-+|..+++.|.+.. ..+++|.|.+        . +.+.+..++.+-... +.+. .   ..+  .+  +.
T Consensus       231 ~~v~VqG~GnVG~~~a~~L~~~G-akvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~-~---y~~--~~--~a  301 (449)
T 1bgv_A          231 KTVALAGFGNVAWGAAKKLAELG-AKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQ-D---YAD--KF--GV  301 (449)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHT-CEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTH-H---HHH--HH--TC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChh-h---ccc--cc--CC
Confidence            68999999999999999998774 8999998852        1 222333444332221 2222 0   000  00  11


Q ss_pred             EEEEEEecCCCCCCCccCCCccEEEecC-CCccCHHHHHHHHhCCCcEEE
Q 019445           77 KPVAVFGFRNPEEIPWAKTGAEYVVEST-GVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        77 ~~i~v~~~~~~~~~~w~~~~~DvV~~at-~~~~s~~~~~~~l~~G~k~V~  125 (341)
                      +.+      +++++ |. .++|+.+-|. +...+.+.++.+...|||.|.
T Consensus       302 ~~i------~~~e~-~~-~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~  343 (449)
T 1bgv_A          302 QFF------PGEKP-WG-QKVDIIMPCATQNDVDLEQAKKIVANNVKYYI  343 (449)
T ss_dssp             EEE------ETCCG-GG-SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEE
T ss_pred             EEe------Cchhh-hc-CCcceeeccccccccchhhHHHHHhcCCeEEE
Confidence            111      12333 74 6899999876 466788999998888998665

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.53  E-value=0.22  Score=40.60  Aligned_cols=33  Identities=12%  Similarity=0.095  Sum_probs=26.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ...+|.|+|+|++|+.+++.|.+.. .+++.|..
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g-~~V~vid~   34 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRG-QNVTVISN   34 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEEC
Confidence            3458999999999999999998764 56666643

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.50  E-value=0.34  Score=44.13  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC
Q 019445            6 KIKIGINGFGRIGRLVARVALQR   28 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~   28 (341)
                      ++||+|+|+|.+|..+...|.+.
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~   24 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQS   24 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC
Confidence            36999999999999999888754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=90.46  E-value=0.35  Score=45.00  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=26.0

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcC-CCcEEEEee
Q 019445            6 KIKIGINGF-GRIGRLVARVALQR-DDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~-p~~elv~i~   37 (341)
                      .++|-|.|+ |.+|+.+++.|+++ ...+|+.+.
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~   54 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS   54 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEE
Confidence            368999999 99999999999887 433776664

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.42  E-value=0.25  Score=46.16  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=25.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      ++||+|+|+|.+|..++..|...+.+ +|+.+ |.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~-D~   38 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVI-DV   38 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEE-CS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEE-ec
Confidence            47999999999999999998877644 55444 54

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.27  E-value=0.38  Score=44.84  Aligned_cols=34  Identities=32%  Similarity=0.420  Sum_probs=25.8

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .++||+|+|+|.+|..++..|..++-.+|+-+ |.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~-Di   37 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLF-DI   37 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEE-CS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEE-eC
Confidence            34699999999999999998887763265444 44

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=90.26  E-value=0.19  Score=48.18  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHc
Q 019445            6 KIKIGINGFGRIGRLVARVALQ   27 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~   27 (341)
                      +.||+|+|+|..|-.|..+|.+
T Consensus        34 p~KI~ViGaGsWGTALA~~la~   55 (391)
T 4fgw_A           34 PFKVTVIGSGNWGTTIAKVVAE   55 (391)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHH
Confidence            5799999999999999999875

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=90.18  E-value=0.21  Score=45.32  Aligned_cols=32  Identities=28%  Similarity=0.566  Sum_probs=25.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||+|+|+|.+|+.+++.|.++. .++ .+.++
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~g-~~V-~~~~~   36 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKAG-YSL-VVSDR   36 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTT-CEE-EEECS
T ss_pred             cceEEEECchHHHHHHHHHHHhCC-CEE-EEEeC
Confidence            469999999999999999998875 565 44454

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.13  E-value=0.42  Score=44.46  Aligned_cols=86  Identities=15%  Similarity=0.323  Sum_probs=51.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      -+|.|+|+|-+|...++++.... .+++++... ....  ..+.+    .|.            .     .   ++  .+
T Consensus       178 ~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~-~~~~--~~~~~----lGa------------~-----~---v~--~~  227 (348)
T 3two_A          178 TKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARN-EHKK--QDALS----MGV------------K-----H---FY--TD  227 (348)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEEECSS-STTH--HHHHH----TTC------------S-----E---EE--SS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCC-HHHH--HHHHh----cCC------------C-----e---ec--CC
Confidence            37999999999999999887765 587776533 2211  11111    110            0     0   11  12


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~  125 (341)
                      ++.+   ..++|+||+|++...+.+.+-..++.|-+.+.
T Consensus       228 ~~~~---~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~  263 (348)
T 3two_A          228 PKQC---KEELDFIISTIPTHYDLKDYLKLLTYNGDLAL  263 (348)
T ss_dssp             GGGC---CSCEEEEEECCCSCCCHHHHHTTEEEEEEEEE
T ss_pred             HHHH---hcCCCEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            3322   23899999999988676666666655554444

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.13  E-value=0.27  Score=43.70  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=25.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |+||+|+|+|.+|+.+++.|.+.+ .+ +.+.++
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g-~~-v~~~~~   34 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTP-HE-LIISGS   34 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSS-CE-EEEECS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCC-Ce-EEEECC
Confidence            359999999999999999998876 34 456565

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=90.01  E-value=0.24  Score=42.06  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=27.1

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEee
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDV-ELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~-elv~i~   37 (341)
                      |.. |+++|.|.|+ |.+|+.+++.|.+++.+ +++.+.
T Consensus         1 M~~-~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~   38 (215)
T 2a35_A            1 MHS-TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA   38 (215)
T ss_dssp             ----CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCB
T ss_pred             CCC-CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEe
Confidence            543 3468999999 99999999999998753 666654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=89.99  E-value=0.19  Score=49.69  Aligned_cols=29  Identities=21%  Similarity=0.347  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|+|+|+|.||+.+++.+.... ++++.+
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~G-a~Viv~  303 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQG-ARVSVT  303 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998775 566544

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=89.86  E-value=0.35  Score=45.12  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=25.6

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .++||+|+|+|.+|..++..|..++..+|+- .|.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L-~Di   39 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVL-FDI   39 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEE-ECS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEE-EeC
Confidence            4579999999999999998888765226544 344

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=89.65  E-value=0.27  Score=45.16  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=27.1

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeC
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRD-DVELVAVND   38 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~   38 (341)
                      |+.|  ++|-|.|+ |++|+.+++.|.++. ..+++.+..
T Consensus         1 Ms~m--~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r   38 (348)
T 1oc2_A            1 MSQF--KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   38 (348)
T ss_dssp             --CC--SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CCcC--cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            6653  48999999 999999999998762 467777643

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=89.63  E-value=0.22  Score=48.83  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=25.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC-CcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD-DVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv~i   36 (341)
                      |+||+|+|+|++|..+.+.|.++. ..+++.+
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~   36 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVV   36 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEE
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEE
Confidence            359999999999999999988762 4676655

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=89.61  E-value=0.26  Score=44.60  Aligned_cols=33  Identities=33%  Similarity=0.403  Sum_probs=27.1

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +++||.|.|+ |++|+.+++.|.++. .+++++..
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   39 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASG-EEVTVLDD   39 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEec
Confidence            4579999999 999999999999886 57766643

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=89.55  E-value=0.21  Score=44.36  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=21.9

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      |+++||+|+|+|.+|..+.+.|.+..
T Consensus         2 m~~m~i~iiG~G~mG~~~a~~l~~~g   27 (262)
T 2rcy_A            2 MENIKLGFMGLGQMGSALAHGIANAN   27 (262)
T ss_dssp             CSSSCEEEECCSHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCC
Confidence            34569999999999999999987654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=89.48  E-value=0.22  Score=45.56  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=25.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||+|+|+|++|..+.+.|.++. .++... ++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G-~~V~~~-dr   46 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWP-GGVTVY-DI   46 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTST-TCEEEE-CS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCC-CeEEEE-eC
Confidence            469999999999999999998875 565444 44

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.44  E-value=0.81  Score=42.02  Aligned_cols=29  Identities=28%  Similarity=0.344  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .||||+|+|.+|..+++.+. .. ++++..+
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG-~~V~v~d   41 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SK-HEVVLQD   41 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TT-SEEEEEC
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cC-CEEEEEE
Confidence            68999999999999999999 64 6765553

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=89.44  E-value=0.27  Score=45.24  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=28.0

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRD-DVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~   38 (341)
                      +++||-|.|+ |++|+.+++.|+++. .++++++..
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~   58 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDA   58 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEec
Confidence            4579999999 999999999998763 578877764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=89.37  E-value=0.29  Score=44.40  Aligned_cols=35  Identities=34%  Similarity=0.487  Sum_probs=25.5

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |++  ++||+|+|+|.+|+.+++.|.+.. .++. +.++
T Consensus         1 M~~--~~~i~iiG~G~~G~~~a~~l~~~g-~~V~-~~~~   35 (301)
T 3cky_A            1 MEK--SIKIGFIGLGAMGKPMAINLLKEG-VTVY-AFDL   35 (301)
T ss_dssp             -----CCEEEEECCCTTHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CCC--CCEEEEECccHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            554  359999999999999999998765 5655 4444

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=89.36  E-value=0.26  Score=44.07  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=27.3

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |++||-|.|+ |++|+.+++.|.++. .+++++..
T Consensus         4 M~m~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   37 (287)
T 3sc6_A            4 MKERVIITGANGQLGKQLQEELNPEE-YDIYPFDK   37 (287)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHSCTTT-EEEEEECT
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHhCC-CEEEEecc
Confidence            4469999999 999999999999885 67777753

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=89.29  E-value=1.5  Score=40.47  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +||+|+|+|.+|..++-.|..++-+.-+.+.|.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di   33 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDL   33 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            389999999999999888877653333344454

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=88.87  E-value=0.39  Score=44.12  Aligned_cols=33  Identities=15%  Similarity=0.399  Sum_probs=26.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .|+||||+|+|++|..+.+.|.+.. .++... ++
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G-~~V~~~-dr   52 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNG-FKVTVW-NR   52 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCC-CeEEEE-eC
Confidence            3579999999999999999998875 465544 44

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=88.75  E-value=0.42  Score=43.33  Aligned_cols=32  Identities=19%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +.||+|+|+|.+|..+++.+.++. ++++.. |.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G-~~V~l~-d~   35 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHG-FAVTAY-DI   35 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CeEEEE-eC
Confidence            469999999999999999998875 565544 54

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=88.73  E-value=0.4  Score=44.25  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=27.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||+|+|+|++|..++..|...+.++ +.+.|.
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~~g~~~-v~L~Di   34 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAAKELGD-IVLLDI   34 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCe-EEEEeC
Confidence            369999999999999999888877567 566665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=88.60  E-value=0.49  Score=49.06  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=24.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +.||||+|+|.+|..+...+.+.. ++++..
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG-~~V~l~  341 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSN-YPVILK  341 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTT-CCEEEE
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCC-CEEEEE
Confidence            358999999999999999998875 555444

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=88.58  E-value=0.4  Score=43.47  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=27.0

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ++||.|.|+ |++|+.+++.|.++. .+++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   34 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTR   34 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeC
Confidence            368999999 999999999999886 57777653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=88.45  E-value=0.5  Score=43.69  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ++||||+|+|++|..+++.|.++...++...
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~   54 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAY   54 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEE
Confidence            4699999999999999999988752455444

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=88.29  E-value=0.39  Score=45.40  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=26.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||||+|+|++|..+++.|.++. .+++.. ++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G-~~V~v~-dr   53 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGG-HECVVY-DL   53 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CCEEEEECchHHHHHHHHHHHhCC-CEEEEE-eC
Confidence            479999999999999999999886 565544 44

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=88.28  E-value=0.47  Score=45.10  Aligned_cols=112  Identities=18%  Similarity=0.140  Sum_probs=62.0

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |.||.|.|. |-||...+..+.+||+ |+++++.......+.++...+  ...+++.    -+.+.......+  +.+..
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~--~f~p~~v----~v~d~~~~~~~~--~~v~~   92 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRA--QTGVTNI----AVADEHAAQRVG--DIPYH   92 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHH--HHCCCCE----EESCHHHHHHHC--CCSEE
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHH--HcCCCEE----EEcCHHHhhhcC--CEEEe
Confidence            578999999 9999999999999986 999999872134333332211  1112221    010000000000  01111


Q ss_pred             cCC-CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           84 FRN-PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        84 ~~~-~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      ..+ ..++- ...++|+|+-+.--+....-.-+++++|. ++-|.
T Consensus        93 G~~~l~~~a-~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK-~iaLA  135 (398)
T 2y1e_A           93 GSDAATRLV-EQTEADVVLNALVGALGLRPTLAALKTGA-RLALA  135 (398)
T ss_dssp             STTHHHHHH-HHSCCSEEEECCCSGGGHHHHHHHHHHTC-EEEEC
T ss_pred             cHHHHHHHh-cCCCCCEEEEeCcCHHHHHHHHHHHHCCC-ceEEc
Confidence            000 00010 01368999999888777776677888995 45554

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=88.12  E-value=0.38  Score=44.13  Aligned_cols=32  Identities=19%  Similarity=0.481  Sum_probs=25.6

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||||+|+|.+|..+++.|.+.. +++... ++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G-~~V~~~-dr   40 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQG-KRVAIW-NR   40 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTT-CCEEEE-CS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEEEE-eC
Confidence            468999999999999999998875 455444 54

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=88.10  E-value=0.76  Score=43.00  Aligned_cols=33  Identities=36%  Similarity=0.429  Sum_probs=25.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      .+||+|+|+|.+|..++..|+..+.+ || .+.|.
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el-~L~Di   52 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMKDLADEL-ALVDV   52 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEE-EEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceE-EEEeC
Confidence            47999999999999888888776643 44 44454

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=88.09  E-value=0.49  Score=45.16  Aligned_cols=113  Identities=16%  Similarity=0.165  Sum_probs=63.2

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC---cceE--E--CC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTLL--F--GE   76 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~---~~l~--i--~g   76 (341)
                      |.+|.|.|. |-||...+..+.+||+ |+++++... ...+.++...+  ...+++.    -+.+.   ..|.  .  .+
T Consensus         9 ~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag-~nv~~L~~q~~--~f~p~~v----~v~d~~~~~~L~~~l~~~~   81 (406)
T 1q0q_A            9 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG-KNVTRMVEQCL--EFSPRYA----VMDDEASAKLLKTMLQQQG   81 (406)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES-SCHHHHHHHHH--HHCCSEE----EESSHHHHHHHHHHHHHTT
T ss_pred             ceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcC-CCHHHHHHHHH--HhCCCEE----EEcCHHHHHHHHHHhhcCC
Confidence            569999999 9999999999999986 999999874 34333332211  1112211    01000   0000  0  01


Q ss_pred             EEEEEEecC-CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           77 KPVAVFGFR-NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        77 ~~i~v~~~~-~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      ..+.++... ...++- ...++|+|+-+.--+....-.-+++++|. ++-|.
T Consensus        82 ~~~~v~~G~~~l~~~a-~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK-~iaLA  131 (406)
T 1q0q_A           82 SRTEVLSGQQAACDMA-ALEDVDQVMAAIVGAAGLLPTLAAIRAGK-TILLA  131 (406)
T ss_dssp             CCCEEEESHHHHHHHH-TCTTCCEEEECCSSGGGHHHHHHHHHTTC-EEEEC
T ss_pred             CCcEEEeCHHHHHHHh-cCCCCCEEEEccccHhHHHHHHHHHHCCC-eEEEe
Confidence            111222110 001110 01368999999888777776777889995 45554

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=88.02  E-value=1.7  Score=40.18  Aligned_cols=89  Identities=18%  Similarity=0.060  Sum_probs=53.2

Q ss_pred             ceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      +.||.++|.|-+|.. ++++|.++. .++ .+.|..........|          .      +.       |  +.++..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G-~~V-~~~D~~~~~~~~~~L----------~------~~-------g--i~v~~g   56 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAG-FEV-SGCDAKMYPPMSTQL----------E------AL-------G--IDVYEG   56 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTT-CEE-EEEESSCCTTHHHHH----------H------HT-------T--CEEEES
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCC-CEE-EEEcCCCCcHHHHHH----------H------hC-------C--CEEECC
Confidence            468999999999996 888888876 454 455542211111111          0      00       1  122222


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcE
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK  123 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~  123 (341)
                      .+++.+.+  .++|+|+-+.+...+.....++.++|.++
T Consensus        57 ~~~~~l~~--~~~d~vV~Spgi~~~~p~~~~a~~~gi~v   93 (326)
T 3eag_A           57 FDAAQLDE--FKADVYVIGNVAKRGMDVVEAILNLGLPY   93 (326)
T ss_dssp             CCGGGGGS--CCCSEEEECTTCCTTCHHHHHHHHTTCCE
T ss_pred             CCHHHcCC--CCCCEEEECCCcCCCCHHHHHHHHcCCcE
Confidence            24444310  26899999988777767777788899853

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=87.87  E-value=0.36  Score=47.44  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=26.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcC-CCcEEEEee
Q 019445            5 KKIKIGINGFGRIGRLVARVALQR-DDVELVAVN   37 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~-p~~elv~i~   37 (341)
                      +|+||+|+|+|++|..+...|.++ +..+++.+.
T Consensus         8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D   41 (481)
T 2o3j_A            8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVD   41 (481)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEE
Confidence            457999999999999999988875 246776663

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=87.72  E-value=1.1  Score=41.91  Aligned_cols=97  Identities=15%  Similarity=0.245  Sum_probs=60.8

Q ss_pred             ceeEEEEcc-CHHHHHHHHH--HHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCE--EEE
Q 019445            6 KIKIGINGF-GRIGRLVARV--ALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEK--PVA   80 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~--l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~--~i~   80 (341)
                      ..||-|.|+ |+.++.++..  +.++++.++|+..++...+.              .  .        ++.++..  .++
T Consensus        10 ~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~--------------~--~--------~v~~G~~~~Gvp   65 (334)
T 3mwd_B           10 HTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDH--------------K--Q--------KFYWGHKEILIP   65 (334)
T ss_dssp             TCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSE--------------E--E--------EEEETTEEEEEE
T ss_pred             CCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCc--------------c--c--------eEeccCccCCce
Confidence            379999999 9988888776  55678889999988733210              0  0        1111111  245


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHh-CCCcEEEe-cC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLK-GGAKKVVI-SA  128 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~-~G~k~V~l-Sa  128 (341)
                      ++.  +.++++=...++|+++.++|.....+.+.+.+. +|+|.+++ |.
T Consensus        66 vy~--sv~ea~~~~p~~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~  113 (334)
T 3mwd_B           66 VFK--NMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAE  113 (334)
T ss_dssp             EES--SHHHHHHHCTTCCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCS
T ss_pred             eeC--CHHHHhhcCCCCcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence            553  222221000158999999998777666666676 89986665 64

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=87.52  E-value=0.53  Score=44.35  Aligned_cols=30  Identities=37%  Similarity=0.510  Sum_probs=25.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d  203 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFG-LAIHYHN  203 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CEEEEEEeChhHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998775 7776653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=87.48  E-value=0.43  Score=41.37  Aligned_cols=30  Identities=27%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ++||+|+|+|.+|+.+++.|.++. .++..+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g-~~V~~~   57 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSG-FKVVVG   57 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCC-CEEEEE
Confidence            468999999999999999998765 455544

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=87.43  E-value=0.46  Score=44.11  Aligned_cols=30  Identities=27%  Similarity=0.327  Sum_probs=25.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.|.... +++.+.+
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G-~~V~~~d  169 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWG-FPLRCWS  169 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTT-CCEEEEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEEEc
Confidence            58999999999999999998775 6776664

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=87.40  E-value=0.49  Score=43.51  Aligned_cols=32  Identities=41%  Similarity=0.560  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      |||+|+|+|.+|..++..|..++.+ +| .+.|.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v-~L~D~   33 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEI-ALVDI   33 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEE-EEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeE-EEEEC
Confidence            3899999999999999988877644 44 44454

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=87.18  E-value=0.66  Score=40.13  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=28.1

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRD-DVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~   38 (341)
                      ++++|-|.|+ |.+|+.+++.|.+++ ..+++.+..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r   38 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   38 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            3468999999 999999999999885 577777643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=87.16  E-value=0.5  Score=44.07  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=26.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +||+|+|+|.+|..++..|.....++ +.+.|.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~-V~L~D~   41 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELAD-VVLYDV   41 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCE-EEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEEC
Confidence            69999999999999999998765446 455565

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=87.08  E-value=0.43  Score=42.17  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=21.4

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      ++||+|+|+|.+|..+++.|.+..
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g   25 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKN   25 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT
T ss_pred             CCeEEEECccHHHHHHHHHHHhCC
Confidence            368999999999999999998765

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=86.99  E-value=0.56  Score=42.21  Aligned_cols=30  Identities=23%  Similarity=0.379  Sum_probs=26.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |||-|-|+ |+||+.|++.|.++. .+++++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G-~~V~~l~   31 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARG-HEVTLVS   31 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEE
Confidence            48999999 999999999998875 5777775

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=86.92  E-value=0.55  Score=43.97  Aligned_cols=29  Identities=24%  Similarity=0.195  Sum_probs=23.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +||+|+|+|.+|..+.+.|.+.. .++..+
T Consensus        16 ~kI~iIG~G~mG~~la~~L~~~G-~~V~~~   44 (366)
T 1evy_A           16 NKAVVFGSGAFGTALAMVLSKKC-REVCVW   44 (366)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTTE-EEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            39999999999999999998764 455444

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=86.83  E-value=0.5  Score=42.97  Aligned_cols=27  Identities=30%  Similarity=0.482  Sum_probs=20.9

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQR   28 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~   28 (341)
                      |..+ ++||+|+|+|.+|..+.+.|.+.
T Consensus         4 m~~~-~m~I~iiG~G~mG~~~a~~L~~~   30 (317)
T 2qyt_A            4 MNQQ-PIKIAVFGLGGVGGYYGAMLALR   30 (317)
T ss_dssp             ---C-CEEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCC-CCEEEEECcCHHHHHHHHHHHhC
Confidence            5554 36999999999999999988765

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=86.76  E-value=0.52  Score=45.94  Aligned_cols=29  Identities=17%  Similarity=0.370  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +||+|+|+|++|..+...|.++. .+++.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G-~~V~~~   31 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELG-ANVRCI   31 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcC-CEEEEE
Confidence            59999999999999999998875 566655

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=86.61  E-value=0.65  Score=39.62  Aligned_cols=30  Identities=37%  Similarity=0.484  Sum_probs=25.9

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||.|.|+ |.+|+.+++.|+++. .+++++..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g-~~V~~~~R   32 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRG-HEVLAVVR   32 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEe
Confidence            7999999 999999999999886 67777753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=86.60  E-value=0.47  Score=45.47  Aligned_cols=30  Identities=27%  Similarity=0.492  Sum_probs=24.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~   37 (341)
                      .+|+|+|+|.+|+.+++.|.... + +++.++
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G-~~~V~v~~  198 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRG-VRAVLVAN  198 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC-CSEEEEEC
T ss_pred             CEEEEEChHHHHHHHHHHHHHCC-CCEEEEEe
Confidence            58999999999999999998765 5 555554

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=86.44  E-value=0.59  Score=42.78  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||+|+|+|.+|+.+++.|.+.. .++. +.++
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g-~~V~-~~~~   61 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMG-HTVT-VWNR   61 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCC-CEEE-EEeC
Confidence            368999999999999999998765 4554 4444

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=86.19  E-value=0.65  Score=42.96  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=25.6

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCc------EEEEe
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDV------ELVAV   36 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~------elv~i   36 (341)
                      ++||.|.|+ |++|..+++.|.+.+.+      +++.+
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~   41 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLL   41 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEE
Confidence            469999999 99999999999887643      66665

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=86.18  E-value=0.69  Score=43.44  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G-~~V~~~  200 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFG-MSVRYW  200 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998765 676554

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=86.16  E-value=0.74  Score=41.94  Aligned_cols=32  Identities=28%  Similarity=0.315  Sum_probs=25.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +.||+|+|+|.+|..++..|.++. .+++.+ |.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G-~~V~~~-d~   46 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATG-HTVVLV-DQ   46 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CeEEEE-EC
Confidence            368999999999999999998775 566544 44

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=86.10  E-value=0.51  Score=43.64  Aligned_cols=26  Identities=15%  Similarity=0.235  Sum_probs=21.2

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      |+++||+|+|+|.+|..+++.|.+..
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G   45 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAG   45 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCC
Confidence            34569999999999999999987754

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=86.02  E-value=1.7  Score=41.97  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||+|-|+|-+|+.+++.|.+.. ..+++|.|.
T Consensus       219 k~vaVqG~GnVG~~~a~~L~~~G-akVVavsD~  250 (419)
T 3aoe_E          219 ARVVVQGLGQVGAAVALHAERLG-MRVVAVATS  250 (419)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEEET
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEEcC
Confidence            68999999999999999998875 899999886

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=85.85  E-value=0.64  Score=43.85  Aligned_cols=30  Identities=30%  Similarity=0.537  Sum_probs=25.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~d  190 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFG-MNVLVWG  190 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEEeECHHHHHHHHHHHhCC-CEEEEEC
Confidence            58999999999999999998775 7776653

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=85.81  E-value=0.64  Score=43.37  Aligned_cols=30  Identities=27%  Similarity=0.585  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~d  176 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMG-ATVIGED  176 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 7766553

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=85.80  E-value=0.62  Score=42.95  Aligned_cols=30  Identities=20%  Similarity=0.402  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~d  154 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALG-AQVRGFS  154 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 6765543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=85.76  E-value=0.19  Score=46.77  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=27.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQ-RDDVELVAVNDPF   40 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~~   40 (341)
                      ..+++|+|+|.+|+..++.|.. +| ++-+.|.++.
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~-~~~V~v~~r~  155 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFA-LEAILVHDPY  155 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSC-CCEEEEECTT
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCC-CcEEEEECCc
Confidence            3689999999999999999876 45 6666777774

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=85.72  E-value=0.76  Score=42.66  Aligned_cols=30  Identities=33%  Similarity=0.572  Sum_probs=25.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~d  176 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFD-MDIDYFD  176 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 7776664

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=85.55  E-value=0.72  Score=42.93  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||++|-|.|+ |.||+.+++.|+++. .+|+++..
T Consensus        23 M~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   56 (375)
T 1t2a_A           23 MRNVALITGITGQDGSYLAEFLLEKG-YEVHGIVR   56 (375)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             cCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEEC
Confidence            3468999999 999999999999875 67777653

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=85.50  E-value=0.61  Score=43.55  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G-~~V~~~d  175 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWG-ATLQYHE  175 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSC-CEEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999987765 7766553

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=85.43  E-value=0.69  Score=43.65  Aligned_cols=30  Identities=30%  Similarity=0.411  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|+||+.+++.|.... +++.+.+
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G-~~V~~~d  194 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFG-CNLLYHD  194 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGC-CEEEEEC
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCC-CEEEEeC
Confidence            58999999999999999998764 7765553

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=85.42  E-value=0.63  Score=41.59  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=23.0

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDD   30 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~   30 (341)
                      +++||-|.|+ |++|+.+++.|.++..
T Consensus         5 ~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            5 QSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            4579999999 9999999999998763

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=85.42  E-value=0.79  Score=42.90  Aligned_cols=30  Identities=33%  Similarity=0.505  Sum_probs=25.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G-~~V~~~d  195 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFG-MKTIGYD  195 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 7776654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=85.41  E-value=0.69  Score=43.50  Aligned_cols=30  Identities=27%  Similarity=0.540  Sum_probs=25.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G-~~V~~~d  178 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMG-AKVIAYD  178 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CeEEEEecCHHHHHHHHHHhhCC-CEEEEEC
Confidence            58999999999999999998764 7776664

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=85.38  E-value=0.69  Score=43.20  Aligned_cols=30  Identities=20%  Similarity=0.438  Sum_probs=25.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~d  175 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFG-AKVIAYD  175 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 7766553

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=85.37  E-value=0.79  Score=43.11  Aligned_cols=30  Identities=30%  Similarity=0.444  Sum_probs=25.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.|.... +++.+.+
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G-~~V~~~d  198 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFG-FNVLFYD  198 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998775 7776543

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=85.37  E-value=0.77  Score=41.52  Aligned_cols=32  Identities=25%  Similarity=0.319  Sum_probs=26.0

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +++||.|.|+ |++|+.+++.|.++. .+++.+.
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~~   34 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLR   34 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCT-TEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEe
Confidence            3468999999 999999999999875 5665553

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=85.27  E-value=0.82  Score=40.40  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=25.0

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ..+||||+|+|.+|..+++.|.++. .++...
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G-~~V~~~   48 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLG-HEVTIG   48 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            3579999999999999999998875 465544

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=85.21  E-value=0.82  Score=42.94  Aligned_cols=30  Identities=30%  Similarity=0.431  Sum_probs=25.0

Q ss_pred             eeEEEEccCHHHHHHHHHHH-cCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVAL-QRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~-~~p~~elv~i~   37 (341)
                      .+|||+|+|+||+.+++.+. ... +++.+..
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G-~~V~~~d  194 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLG-MKLVYYD  194 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcC-CEEEEEC
Confidence            58999999999999999998 765 6766543

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=85.19  E-value=0.57  Score=42.03  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=24.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +||+|+|+|.+|..+++.|.+ . .++. +.++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g-~~V~-~~~~   31 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-R-FPTL-VWNR   31 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-T-SCEE-EECS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-C-CeEE-EEeC
Confidence            489999999999999999987 4 6654 4444

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=85.18  E-value=0.59  Score=42.88  Aligned_cols=30  Identities=37%  Similarity=0.581  Sum_probs=25.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.|.... +++.+.+
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~d  152 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFG-MRVIAYT  152 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT-CEEEEEC
T ss_pred             chheeeccCchhHHHHHHHHhhC-cEEEEEe
Confidence            58999999999999999998764 6776663

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=85.08  E-value=0.73  Score=43.11  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|+||+++++.+.... +++.+.
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg-~~v~~~  170 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFG-MKVLCY  170 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             cEEEEECcchHHHHHHHhhcccC-ceeeec
Confidence            58999999999999999998765 777655

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=85.04  E-value=0.69  Score=43.07  Aligned_cols=30  Identities=33%  Similarity=0.476  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++|||+|+|+||+.+++.+.... +++.+..
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d  185 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFG-VQRFLYT  185 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGT-CCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 5665554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=85.00  E-value=0.82  Score=44.37  Aligned_cols=29  Identities=34%  Similarity=0.424  Sum_probs=24.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ++||+|+|+|++|..++..|.+  ..+++.+
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~--G~~V~~~   64 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ--NHEVVAL   64 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT--TSEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHc--CCeEEEE
Confidence            4699999999999999998886  4677665

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=84.95  E-value=0.78  Score=43.54  Aligned_cols=30  Identities=30%  Similarity=0.532  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG-~~V~~~d  206 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFR-ARIRVFD  206 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSC-CEEEEEC
T ss_pred             CEEEEecCCcccHHHHHhhhhCC-CEEEEEC
Confidence            58999999999999999987664 7776553

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=84.93  E-value=3.6  Score=39.79  Aligned_cols=87  Identities=17%  Similarity=0.172  Sum_probs=51.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCC--hhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFIS--TDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~--~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      ..||.|+|.|.+|..++|+|.++. .++ .+.|....  ......          +.      +.       |  +.+..
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G-~~V-~~~D~~~~~~~~~~~~----------L~------~~-------g--i~~~~   61 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLG-AIV-TVNDGKPFDENPTAQS----------LL------EE-------G--IKVVC   61 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTT-CEE-EEEESSCGGGCHHHHH----------HH------HT-------T--CEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCC-CEE-EEEeCCcccCChHHHH----------HH------hC-------C--CEEEE
Confidence            368999999999999999999886 454 34444111  011100          10      00       1  12222


Q ss_pred             cCCCCCCCccCCC-ccEEEecCCCccCHHHHHHHHhCCCc
Q 019445           84 FRNPEEIPWAKTG-AEYVVESTGVFTDKDKAAAHLKGGAK  122 (341)
Q Consensus        84 ~~~~~~~~w~~~~-~DvV~~at~~~~s~~~~~~~l~~G~k  122 (341)
                      ..+++++   ..+ +|+|+-+.+...+.....++.++|.+
T Consensus        62 g~~~~~~---~~~~~d~vv~spgi~~~~p~~~~a~~~gi~   98 (451)
T 3lk7_A           62 GSHPLEL---LDEDFCYMIKNPGIPYNNPMVKKALEKQIP   98 (451)
T ss_dssp             SCCCGGG---GGSCEEEEEECTTSCTTSHHHHHHHHTTCC
T ss_pred             CCChHHh---hcCCCCEEEECCcCCCCChhHHHHHHCCCc
Confidence            2233322   124 89999998876666666677777775

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=84.77  E-value=1  Score=41.70  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=27.1

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcC-CCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQR-DDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~-p~~elv~i~~   38 (341)
                      +++|-|.|+ |+||+.+++.|+++ ...+|+++..
T Consensus        10 ~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A           10 NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            479999999 99999999999883 2478777753

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=84.75  E-value=0.79  Score=42.36  Aligned_cols=30  Identities=37%  Similarity=0.618  Sum_probs=25.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~d  174 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAFG-MRVVYHA  174 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEEEECHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 6765543

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=84.74  E-value=0.88  Score=43.99  Aligned_cols=32  Identities=31%  Similarity=0.578  Sum_probs=28.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~~   39 (341)
                      .+|+|+|+|.||+.+++.|.. .. +++++++|+
T Consensus       213 ktvgI~G~G~VG~~vA~~l~~~~G-~kVv~~sD~  245 (419)
T 1gtm_A          213 KTIAIQGYGNAGYYLAKIMSEDFG-MKVVAVSDS  245 (419)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CEEEEEECS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhcC-CEEEEEeCC
Confidence            689999999999999999988 64 899999876

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=84.56  E-value=0.7  Score=42.83  Aligned_cols=30  Identities=17%  Similarity=0.209  Sum_probs=23.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ++||+|+|+|.+|..+...|.+.. .++..+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g-~~V~~~   32 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAG-EAINVL   32 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTT-CCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCC-CEEEEE
Confidence            358999999999999999988764 344444

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=84.51  E-value=0.91  Score=43.13  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |+||+|+|+|.+|..+...|......++..+.
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            36999999999999999998764335665553

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=84.50  E-value=0.82  Score=42.65  Aligned_cols=30  Identities=33%  Similarity=0.548  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++|||+|+|+||+.+++.+.... +++.+.+
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G-~~V~~~d  180 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFN-MRILYYS  180 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCC-CEEEEEC
Confidence            58999999999999999998765 6765553

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=84.48  E-value=1.6  Score=40.16  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=18.7

Q ss_pred             eEEEEccCHHHHHHHHHHHcCC
Q 019445            8 KIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p   29 (341)
                      ||+|+|+|.+|..++-.+...+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~   22 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRG   22 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHT
T ss_pred             CEEEECcCHHHHHHHHHHHhCC
Confidence            6999999999998888776554

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=84.34  E-value=1  Score=41.76  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=25.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      +.||+|+|+|.+|..++..|...+ + +++ +.|.
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g-~~~v~-l~D~   40 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKE-LADVV-LVDI   40 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CCEEE-EECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CCeEE-EEec
Confidence            469999999999999999888775 4 554 4454

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=84.33  E-value=0.77  Score=42.93  Aligned_cols=29  Identities=38%  Similarity=0.494  Sum_probs=24.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||+.+++.+.... +++...
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G-~~V~~~  193 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFD-CPISYF  193 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTT-CCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998765 565544

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=84.29  E-value=0.86  Score=42.02  Aligned_cols=30  Identities=40%  Similarity=0.640  Sum_probs=25.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+..
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~d  172 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALG-MNILLYD  172 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             ceEEEEccCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 7776553

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=84.29  E-value=0.88  Score=41.92  Aligned_cols=36  Identities=28%  Similarity=0.358  Sum_probs=27.3

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |.+  ++||+|+|+|.+|..++..|......+ +.+.|.
T Consensus         1 M~~--~~kI~VIGaG~~G~~ia~~la~~g~~~-V~l~D~   36 (317)
T 2ewd_A            1 MIE--RRKIAVIGSGQIGGNIAYIVGKDNLAD-VVLFDI   36 (317)
T ss_dssp             CCC--CCEEEEECCSHHHHHHHHHHHHHTCCE-EEEECS
T ss_pred             CCC--CCEEEEECCCHHHHHHHHHHHhCCCce-EEEEeC
Confidence            554  359999999999999999988765336 455555

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=84.24  E-value=0.83  Score=42.62  Aligned_cols=29  Identities=38%  Similarity=0.544  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G-~~V~~~  175 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFG-VKLYYW  175 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGT-CEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEE
Confidence            68999999999999999998765 676554

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=84.20  E-value=1.1  Score=42.26  Aligned_cols=36  Identities=19%  Similarity=0.264  Sum_probs=28.0

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |.+|++.+|.|+|+|.+|..++..|.++. ++++-+.
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~G-~~v~v~E   56 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNG-IDVSVYE   56 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTTT-CEEEEEE
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEe
Confidence            55555679999999999999999998875 6766664

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=84.17  E-value=0.87  Score=42.09  Aligned_cols=30  Identities=40%  Similarity=0.619  Sum_probs=25.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G-~~V~~~d  172 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMG-MKVLAYD  172 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 7776553

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=84.12  E-value=0.77  Score=41.81  Aligned_cols=31  Identities=29%  Similarity=0.500  Sum_probs=25.9

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRD-DVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~   37 (341)
                      +||-|.|+ |+||+.+++.|.++. ..+++.+.
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~   36 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINID   36 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence            47999999 999999999998764 46777764

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=84.07  E-value=0.86  Score=42.53  Aligned_cols=30  Identities=17%  Similarity=0.410  Sum_probs=25.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G-~~V~~~d  176 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFG-AKVITYD  176 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEEC
Confidence            58999999999999999998765 7776554

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=83.96  E-value=0.88  Score=43.43  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||+.+++.|.... +++.+.
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G-~~V~~~  148 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALG-IRTLLC  148 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998765 776655

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=83.91  E-value=0.8  Score=42.29  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=25.9

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .++|.|.|+ |.+|+.+++.|.+....+++++..
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r   79 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDN   79 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            368999999 999999999998875456666643

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=83.85  E-value=0.38  Score=42.77  Aligned_cols=32  Identities=13%  Similarity=0.092  Sum_probs=26.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ++||+|+|+|.+|..+.+.|.+.. .+++.++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G-~~V~~~~~   37 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVG-HYVTVLHA   37 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTT-CEEEECSS
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCC-CEEEEecC
Confidence            469999999999999999998875 57666543

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=83.64  E-value=1.1  Score=42.90  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCC-cEEEEee
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDD-VELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~-~elv~i~   37 (341)
                      |..++..+|+|+|+|..|..+++.|.++.. .+++-+.
T Consensus         1 M~~~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E   38 (447)
T 2gv8_A            1 MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFE   38 (447)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEEC
T ss_pred             CCCCCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEe
Confidence            655566899999999999999999998752 1666554

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=83.63  E-value=1  Score=41.75  Aligned_cols=34  Identities=15%  Similarity=0.193  Sum_probs=26.7

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCc------EEEEeeCC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDV------ELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~------elv~i~~~   39 (341)
                      +++||+|+|+ |.+|..++..|...+.+      ||+.+ |.
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~-Di   44 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLL-EI   44 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEE-CC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEE-cC
Confidence            3579999999 99999999998877643      66654 54

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=83.60  E-value=1.6  Score=40.94  Aligned_cols=30  Identities=23%  Similarity=0.290  Sum_probs=23.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~   37 (341)
                      -+|.|+|+|-+|...++++.... . +++++.
T Consensus       184 ~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~  214 (370)
T 4ej6_A          184 STVAILGGGVIGLLTVQLARLAG-ATTVILST  214 (370)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence            37999999999999999887765 5 565553

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=83.57  E-value=2.7  Score=39.80  Aligned_cols=31  Identities=16%  Similarity=0.171  Sum_probs=24.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      -+|.|+|+|-+|...++++....--+++++.
T Consensus       215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  245 (404)
T 3ip1_A          215 DNVVILGGGPIGLAAVAILKHAGASKVILSE  245 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            3799999999999999988776522666664

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=83.45  E-value=0.86  Score=38.43  Aligned_cols=31  Identities=19%  Similarity=0.216  Sum_probs=25.4

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +..|+|+|+|..|..++..|.++. ++++-+-
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G-~~V~v~E   32 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAG-HQVHLFD   32 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT-CCEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC-CCEEEEE
Confidence            478999999999999999998875 5655553

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=83.45  E-value=1.3  Score=37.77  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=24.2

Q ss_pred             eEEEEc-cCHHHHHHHHHHHcCCCcEEEEee
Q 019445            8 KIGING-FGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         8 rV~I~G-~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ||+|+| +|++|+.+++.|.++. .++..++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~   31 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLG-HEIVVGS   31 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTT-CEEEEEE
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            799999 6999999999998875 5766553

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=83.18  E-value=1.1  Score=42.13  Aligned_cols=31  Identities=23%  Similarity=0.463  Sum_probs=25.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      -+|.|.|+|.+|..+++++.... .+++++..
T Consensus       189 ~~VlV~GaG~vG~~~~q~a~~~G-a~Vi~~~~  219 (366)
T 1yqd_A          189 KHIGIVGLGGLGHVAVKFAKAFG-SKVTVIST  219 (366)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence            37999999999999999887765 57766653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=83.18  E-value=0.71  Score=42.78  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      -+|.|+|+|-+|...++++......+++++..
T Consensus       173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~  204 (345)
T 3jv7_A          173 STAVVIGVGGLGHVGIQILRAVSAARVIAVDL  204 (345)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            37999999999999998887664467777643

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=83.15  E-value=0.99  Score=43.04  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||+.+++.|.... +++.+.
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G-~~V~~~  145 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLG-WKVLVC  145 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998764 676554

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=82.93  E-value=0.95  Score=43.95  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=30.0

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHc---CCC-cEEEEeeCC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQ---RDD-VELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~---~p~-~elv~i~~~   39 (341)
                      .|.||.|.|. |-||...+..+.+   ||+ |+++++...
T Consensus        76 ~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg  115 (488)
T 3au8_A           76 KPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVN  115 (488)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEES
T ss_pred             cceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcC
Confidence            3568999999 9999999999998   554 999999874

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=82.90  E-value=1.2  Score=40.60  Aligned_cols=31  Identities=29%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +++|-|.|+ |.||+.+++.|+++. .+++.+.
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~   36 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHG-YDVVIAD   36 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEe
Confidence            468999999 999999999999885 5666664

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=82.87  E-value=0.86  Score=37.98  Aligned_cols=30  Identities=23%  Similarity=0.253  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcC-CCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQR-DDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~-p~~elv~i~   37 (341)
                      .+|.|+|+|++|+.+++.|.++ . .+++.+.
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid   70 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYG-KISLGIE   70 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHC-SCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhccC-CeEEEEE
Confidence            5899999999999999999765 4 5666664

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=82.66  E-value=0.89  Score=44.53  Aligned_cols=32  Identities=16%  Similarity=0.327  Sum_probs=25.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ++||||+|+|.+|..+++.|.++. +++. +.++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G-~~V~-v~dr   36 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRG-YTVA-IYNR   36 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCC-CEEE-EEcC
Confidence            468999999999999999998875 4654 4444

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=82.66  E-value=0.62  Score=42.09  Aligned_cols=31  Identities=16%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +||+|+|+|++|..+.+.|.++. .++... ++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G-~~V~~~-dr   32 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAG-FDVTVW-NR   32 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHT-CCEEEE-CS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCC-CeEEEE-cC
Confidence            48999999999999999998764 455444 44

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=82.34  E-value=0.97  Score=44.40  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=25.1

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      |.+.||||+|+|.+|..+++.|.++. ++|...
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G-~~V~v~   44 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRG-YTVSIF   44 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTT-CCEEEE
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCC-CeEEEE
Confidence            44678999999999999999999875 565444

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=82.32  E-value=1.1  Score=43.06  Aligned_cols=29  Identities=28%  Similarity=0.403  Sum_probs=24.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .++||+|+|.||+.+++.+.... +++.+.
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G-~~V~~~  174 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLG-MYVYFY  174 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEeECHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998765 776554

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=82.31  E-value=1.1  Score=42.97  Aligned_cols=30  Identities=33%  Similarity=0.404  Sum_probs=25.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.+
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G-~~V~~~d  221 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFD-VHLHYTD  221 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGT-CEEEEEC
T ss_pred             CEEEEEeECHHHHHHHHHHHhCC-CEEEEEc
Confidence            58999999999999999998765 7776553

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=82.25  E-value=0.85  Score=42.94  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=25.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|.|+|+|.+|+.+++.+.... .+++.++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~G-a~V~v~d  197 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLG-AQVQIFD  197 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEEe
Confidence            58999999999999999998876 4665554

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=82.03  E-value=0.94  Score=44.62  Aligned_cols=33  Identities=12%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .|+||||+|+|.+|..+++.|.++. ++++.. ++
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G-~~V~v~-dr   35 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHG-FVVCAF-NR   35 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTT-CCEEEE-CS
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCC-CEEEEE-eC
Confidence            3468999999999999999998876 565544 44

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=81.97  E-value=1.4  Score=39.73  Aligned_cols=30  Identities=23%  Similarity=0.333  Sum_probs=25.9

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ++|-|.|+ |.+|+.+++.|.++. .+++++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~   33 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNN-WHAVGCG   33 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCC-CeEEEEc
Confidence            58999999 999999999999876 6777664

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=81.57  E-value=0.95  Score=42.09  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=26.7

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |||.|.|+ |++|+.+++.|.+++.++++.+.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d   32 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVH   32 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEC
Confidence            37999999 99999999999988766777663

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=81.46  E-value=1.3  Score=41.17  Aligned_cols=31  Identities=19%  Similarity=0.243  Sum_probs=26.4

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .+|-|.|+ |+||+.+++.|.++. .+|+++..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r   60 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIR   60 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEec
Confidence            58999999 999999999999876 57777653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=81.38  E-value=2.1  Score=41.61  Aligned_cols=93  Identities=17%  Similarity=0.078  Sum_probs=55.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      .+|-|+|+|.+|...++.|.+.. .+++.+. +.... .+..+.   .             .+ .+..      +..+.+
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~g-a~V~vi~-~~~~~-~~~~l~---~-------------~~-~i~~------~~~~~~   66 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAG-ARLTVNA-LTFIP-QFTVWA---N-------------EG-MLTL------VEGPFD   66 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-BEEEEEE-SSCCH-HHHHHH---T-------------TT-SCEE------EESSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCc-CEEEEEc-CCCCH-HHHHHH---h-------------cC-CEEE------EECCCC
Confidence            68999999999999999999876 5555443 31222 111110   0             00 1110      111112


Q ss_pred             CCCCCccCCCccEEEecCCCc-cCHHHHHHHHhCCCcEEEecCC
Q 019445           87 PEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~-~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      ++.+    .++|+||-||+.. .....+..+.+.|+.+-+++.+
T Consensus        67 ~~~l----~~~~lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~  106 (457)
T 1pjq_A           67 ETLL----DSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVDAP  106 (457)
T ss_dssp             GGGG----TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEETTCT
T ss_pred             cccc----CCccEEEEcCCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence            2222    3789999999977 4666677777788865555543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=81.34  E-value=2.3  Score=39.59  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHH-HHHH-HcCCCcE-EEEeeCC
Q 019445            7 IKIGINGFGRIGRLV-ARVA-LQRDDVE-LVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~l-lr~l-~~~p~~e-lv~i~~~   39 (341)
                      -+|.|+|+|-+|... ++++ .... .+ ++++...
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~G-a~~Vi~~~~~  208 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKG-YENLYCLGRR  208 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTC-CCEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcC-CcEEEEEeCC
Confidence            489999999999999 8887 5554 55 7776543

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=81.34  E-value=1.4  Score=39.99  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=26.2

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +||.|.|+ |++|+.+++.|.++. .+++++..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   33 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDN   33 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeC
Confidence            48999999 999999999999875 57777643

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=81.24  E-value=3.4  Score=40.32  Aligned_cols=32  Identities=9%  Similarity=0.034  Sum_probs=26.3

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +++|-|.|+ |++|+.+++.|.+.. .+|+++.-
T Consensus       150 ~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~R  182 (508)
T 4f6l_B          150 LGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIR  182 (508)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEEE
T ss_pred             CCeEEEECCccchHHHHHHHHHhcC-CEEEEEEC
Confidence            478999999 999999999996553 67777754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=81.19  E-value=1.2  Score=43.60  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=26.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +.|||-|+|+|++|+.+++.|..+. .+++.|.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~-~~v~vId   33 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGEN-NDITIVD   33 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTT-EEEEEEE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCC-CCEEEEE
Confidence            4579999999999999999998764 5777664

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=81.04  E-value=1.1  Score=40.92  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=25.7

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .+++|-|.|+ |++|+.+++.|+++. .+++++..
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r   51 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDL   51 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeC
Confidence            3578999999 999999999999876 57766643

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=80.82  E-value=1.5  Score=39.85  Aligned_cols=31  Identities=26%  Similarity=0.388  Sum_probs=26.4

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      ||-|.|+ |++|+.+++.|.+++..+++++..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   33 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence            7999999 999999999999875567777753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=80.36  E-value=1.4  Score=40.53  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=26.9

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +++|-|.|+ |++|+.+++.|.++. .+++++..
T Consensus        27 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   59 (352)
T 1sb8_A           27 PKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDN   59 (352)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeC
Confidence            468999999 999999999999875 57777653

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=80.26  E-value=1.3  Score=41.08  Aligned_cols=29  Identities=24%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCc-EEEEee
Q 019445            8 KIGINGFGRIGRLVARVALQRDDV-ELVAVN   37 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~-elv~i~   37 (341)
                      +|.|+|+|-+|..+++++.... . +++++.
T Consensus       167 ~VlV~GaG~vG~~~~q~a~~~G-a~~Vi~~~  196 (343)
T 2dq4_A          167 SVLITGAGPIGLMAAMVVRASG-AGPILVSD  196 (343)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHcC-CCEEEEEC
Confidence            6999999999999999887665 5 666664

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=80.24  E-value=1.7  Score=40.73  Aligned_cols=96  Identities=16%  Similarity=0.223  Sum_probs=52.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      -+|.|+|+ |-+|...++++......+++++...   .+....+.+    .|.            ...++... ....  
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~---~~~~~~~~~----lGa------------d~vi~~~~-~~~~--  230 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASR---PETQEWVKS----LGA------------HHVIDHSK-PLAA--  230 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSS---HHHHHHHHH----TTC------------SEEECTTS-CHHH--
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCC---HHHHHHHHH----cCC------------CEEEeCCC-CHHH--
Confidence            47999996 9999999988765334677777542   222221111    110            00111000 0000  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                      ...++  ...++|+||+|+|.....+.+.++++.|-+.+.+
T Consensus       231 ~v~~~--~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          231 EVAAL--GLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHHTT--CSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHh--cCCCceEEEECCCchhhHHHHHHHhcCCCEEEEE
Confidence            00111  1247999999999765556666677776655544

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=80.17  E-value=1.5  Score=42.41  Aligned_cols=29  Identities=28%  Similarity=0.441  Sum_probs=24.7

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|.||+.+++.+.... +++.+.
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~y  185 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLG-MTVRYY  185 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCC-CEEEEE
Confidence            58999999999999999998775 776554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=80.12  E-value=1.2  Score=42.00  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcE-EEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVE-LVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~e-lv~i~   37 (341)
                      .+|||+|+|.||+.+++.|.... ++ +.+.+
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G-~~~V~~~d  195 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFN-PKELLYYD  195 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGC-CSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CcEEEEEC
Confidence            58999999999999999998764 65 65543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=80.01  E-value=1.6  Score=39.82  Aligned_cols=33  Identities=30%  Similarity=0.560  Sum_probs=27.0

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .|++|.|.|+ |++|+.+++.|.++. .+++++..
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r   53 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERG-DKVVGIDN   53 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEEC
Confidence            3468999999 999999999999876 67777743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1u8fo2	164	d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate de	3e-94
d3cmco2	163	d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate de	5e-91
d1rm4a2	163	d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate de	2e-89
d1obfo2	162	d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate de	1e-82
d2g82a2	162	d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate de	3e-80
d1k3ta2	169	d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate de	2e-76
d1u8fo1	169	c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosp	4e-69
d1dssg1	169	c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosp	2e-67
d1rm4a1	172	c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosp	3e-65
d1gado1	166	c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosp	6e-62
d1hdgo1	169	c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosp	7e-61
d3cmco1	171	c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosp	1e-60
d2b4ro1	166	c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosp	4e-60
d1k3ta1	190	c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosp	3e-58
d1cf2o1	171	c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosp	2e-53
d2g82a1	168	c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosp	4e-51
d1obfo1	173	c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosp	1e-49
d2czca2	172	c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosp	7e-49
d1b7go1	178	c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosp	3e-43
d1cf2o2	165	d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate de	3e-39
d1b7go2	162	d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate de	6e-38
d2czca1	162	d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate de	2e-07
d1f06a1	170	c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid de	4e-07
d1ydwa1	184	c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductas	7e-06
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	1e-05
d1nvmb1	157	c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge	7e-05
d1lc0a1	172	c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {	1e-04
d1zh8a1	181	c.2.1.3 (A:4-131,A:276-328) Hypothetical protein T	2e-04
d2g17a1	179	c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamy	2e-04
d1tlta1	164	c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM	5e-04
d1vkna1	176	c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamy	5e-04
d1h6da1	221	c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxid	6e-04

>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score =  275 bits (705), Expect = 3e-94
 Identities = 126/164 (76%), Positives = 140/164 (85%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           CTTNCLAPLAKVIHD FGIVEGLMTTVH+ITATQKTVDGPS K WR GR A  NIIP+ST
Sbjct: 1   CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPAST 60

Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
           GAAKAVGKV+P LNGKLTGM+FRVPT +VSVVDLT RLEK A Y++IK  +K+ SEG LK
Sbjct: 61  GAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLK 120

Query: 277 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 320
           GILGYTE  VVS+DF  D+ SS FDA AGIAL+ +FVKL+SWYD
Sbjct: 121 GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164

>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 163

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score =  267 bits (683), Expect = 5e-91
 Identities = 96/164 (58%), Positives = 120/164 (73%), Gaps = 1/164 (0%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           CTTNCLAP AKV+H++FGIV G+MTTVHS T  Q+ +D P  KD R  RAA+ +IIP++T
Sbjct: 1   CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLP-HKDLRRARAAAESIIPTTT 59

Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
           GAAKAV  VLP L GKL GM+ RVPT +VSVVDL   LEKE T EE+  A+K  +EG+LK
Sbjct: 60  GAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELK 119

Query: 277 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 320
           GIL Y+EE +VS D+ G + SS  DA + + +    VK+VSWYD
Sbjct: 120 GILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163

>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 163

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  263 bits (673), Expect = 2e-89
 Identities = 81/164 (49%), Positives = 109/164 (66%), Gaps = 1/164 (0%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           CTTNCLAP  KV+  KFGI++G MTT HS T  Q+ +D    +D R  RAA  NI+P+ST
Sbjct: 1   CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAACLNIVPTST 59

Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
           GAAKAV  VLP L GKL G++ RVPT +VSVVDL V++ K+   EE+  A +E ++ +LK
Sbjct: 60  GAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELK 119

Query: 277 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 320
           GIL   +E +VS DF     SS  D+   + +  + VK+++WYD
Sbjct: 120 GILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163

>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

 Score =  245 bits (628), Expect = 1e-82
 Identities = 82/164 (50%), Positives = 108/164 (65%), Gaps = 2/164 (1%)

Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
           SCTTNCLAPL K ++DK G+ +GLMTTVH+ T  Q   D    +D R  R+A+ ++IP+ 
Sbjct: 1   SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTD-VYHEDLRRARSATMSMIPTK 59

Query: 216 TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 275
           TGAA AVG VLP L+GKL G + RVPT++VS+VDL+   ++  T EE+   +K  SEG+L
Sbjct: 60  TGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGEL 119

Query: 276 KGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWY 319
           KGIL Y  E +VS D+  D  SS  DA     +S   VK+ SWY
Sbjct: 120 KGILDYNTEPLVSVDYNHDPASSTVDASL-TKVSGRLVKVSSWY 162

>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

 Score =  239 bits (611), Expect = 3e-80
 Identities = 87/164 (53%), Positives = 112/164 (68%), Gaps = 2/164 (1%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           CTTN LAP+ KV+ + FG+ + LMTTVHS T  Q+ +D P  KD R  RAA+ NIIP++T
Sbjct: 1   CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLP-HKDLRRARAAAINIIPTTT 59

Query: 217 GAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLK 276
           GAAKA   VLP+L G+  GM+ RVPT   S+ D+T  L++E T EE+  A+K  +EG LK
Sbjct: 60  GAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLK 119

Query: 277 GILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYD 320
           GIL YTE+++V  D V D  SSI DAK   AL  N VK+ +WYD
Sbjct: 120 GILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYD 162

>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 169

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  230 bits (587), Expect = 2e-76
 Identities = 104/169 (61%), Positives = 131/169 (77%), Gaps = 5/169 (2%)

Query: 156 SCTTNCLAPLAKV-IHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPS 214
           SCTTNCLAP+  V + + FG+  GLMTT+HS TATQKTVDG S+KDWRGGRAA+ NIIPS
Sbjct: 1   SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPS 60

Query: 215 STGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
           +TGAAKAVG V+P+  GKLTGMSFRVPT DVSVVDLT    ++ + +EI  A+K  S+  
Sbjct: 61  TTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTY 120

Query: 275 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIAL----SKNFVKLVSWY 319
           +KGILGYT+E++VS DF+ D+RSSI+D+KA +       + F K+VSWY
Sbjct: 121 MKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWY 169

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

 Score =  211 bits (539), Expect = 4e-69
 Identities = 85/164 (51%), Positives = 113/164 (68%), Gaps = 2/164 (1%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NGFGRIGRLV R A     V++VA+NDPFI  +YM YMF+YDS HG++    +K
Sbjct: 1   KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHG-TVK 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
             +   L+    P+ +F  R+P +I W   GAEYVVESTGVFT  +KA AHL+GGAK+V+
Sbjct: 60  A-ENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 118

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVI 169
           ISAPS DAPMFV+GVN ++Y   L I+SNAS        +  ++
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

 Score =  207 bits (528), Expect = 2e-67
 Identities = 93/168 (55%), Positives = 117/168 (69%), Gaps = 3/168 (1%)

Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           KIGINGFGRIGRLV R AL+    ++VAVNDPFI+ +YM YMFKYDS HG +K  E+K  
Sbjct: 2   KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFKG-EVKA- 58

Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127
           ++  L+   K + VF    PE IPW+K GAEY+VESTGVFT  +KA+AH KGGAKKV+IS
Sbjct: 59  EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIIS 118

Query: 128 APSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
           APS DAPMFV GVN ++Y  ++ +VSNAS        +  +I     +
Sbjct: 119 APSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQKV 166

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  201 bits (513), Expect = 3e-65
 Identities = 67/173 (38%), Positives = 98/173 (56%), Gaps = 8/173 (4%)

Query: 7   IKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNEL 64
           +K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G +  +  
Sbjct: 1   LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADV- 58

Query: 65  KVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
           K   +  +    K + V   RNP  +PW   G + V+E TGVF D+D A  HL+ GAKKV
Sbjct: 59  KTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKV 118

Query: 125 VISAPSK-DAPMFVVGVNEKEYKPELDIVSNASCT---TNCLAPLAKVIHDKF 173
           +I+AP K D P +VVGVNE+ Y     I+SNAS     +  +  LA ++ +K+
Sbjct: 119 LITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

 Score =  193 bits (491), Expect = 6e-62
 Identities = 76/165 (46%), Positives = 103/165 (62%), Gaps = 5/165 (3%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           IK+GINGFGRIGR+V R A +R D+E+VA+ND  +  DYM YM KYDS HG++    ++V
Sbjct: 2   IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEV 59

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
           KD   L+   K + V   R+P  + W + G + V E+TG+F   + A  H+  GAKKVV+
Sbjct: 60  KDGH-LIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118

Query: 127 SAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIH 170
           + PSKD  PMFV G N  +Y  + DIVSNAS  T     +  +I 
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQ-DIVSNASNETGYSNKVLDLIA 162

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

 Score =  190 bits (484), Expect = 7e-61
 Identities = 68/172 (39%), Positives = 104/172 (60%), Gaps = 8/172 (4%)

Query: 8   KIGINGFGRIGRLVARVALQRD--DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           ++ INGFGRIGRLV R+  +R   D+E+VA+ND    T  + ++ KYDSVH ++     K
Sbjct: 2   RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND-LTDTKTLAHLLKYDSVHKKFPG---K 57

Query: 66  VK-DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV 124
           V+  E +L+   K + VF   +P ++PW   G ++V+ESTGVF +++KA  HL+ GAKKV
Sbjct: 58  VEYTENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKV 117

Query: 125 VISAPSKDAPM-FVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
           +I+AP+K   +  V+G NE + KPE  I+S AS        +   +     +
Sbjct: 118 IITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLELLLKM 169

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

 Score =  189 bits (482), Expect = 1e-60
 Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 7/175 (4%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R AL+  D+E+VAVND     + + ++ KYDSVHG+        
Sbjct: 2   VKVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAE--VS 58

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            +   L+   K + V   R+PE + W + G + VVESTG FT ++ AA HL+ GAKKV+I
Sbjct: 59  VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118

Query: 127 SAPS-KDAPMFVVGVNEKEYKPELD-IVSNASCTTNCLAPLAKVIHDKFGIVEGL 179
           SAP+  +    V+GVN+ +Y P+   ++SNAS  T     +  +    +   +GL
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA--YIASKGL 171

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  188 bits (479), Expect = 4e-60
 Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 6/169 (3%)

Query: 8   KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVK 67
           K+GINGFGRIGRLV R A  R D+E+VA+NDPF+  +++ Y+ KYDSVHGQ+        
Sbjct: 2   KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE--VTH 59

Query: 68  DEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS 127
            +  LL GEK V+VF  ++P +IPW K   + V ESTGVF  K+ A++HLKGGAKKV++S
Sbjct: 60  ADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMS 119

Query: 128 APS-KDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGI 175
           AP   D P++V+G+N  +Y  +  IVSNAS          +V+     I
Sbjct: 120 APPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAVHI 165

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} Length = 190

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  184 bits (469), Expect = 3e-58
 Identities = 71/183 (38%), Positives = 102/183 (55%), Gaps = 13/183 (7%)

Query: 6   KIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
            IK+GINGFGRIGR+V +   +      ++++VAV D     +Y  Y  +YD+VHG++K+
Sbjct: 2   PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61

Query: 62  NELKVKDEKT-------LLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAA 114
                K   +       ++ G + + V   RNP ++PW K G EYV+ESTG+FT K  A 
Sbjct: 62  EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121

Query: 115 AHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKP-ELDIVSNASCTTNCLAPLAKVIHDK 172
            HL+GGA+KVVISAP+   A   V+GVN  EY P E  +VSNA         +  ++   
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM 181

Query: 173 FGI 175
              
Sbjct: 182 ASK 184

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

 Score =  171 bits (435), Expect = 2e-53
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 16/183 (8%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
             + ING+G +G+ VA    Q+DD++++ V+             K               
Sbjct: 2   KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT-RPDFEARMALKKGYDLY-------VA 53

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             E+  LF +  + V G      +      A+ V++ T           + + G K +  
Sbjct: 54  IPERVKLFEKAGIEVAG-----TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108

Query: 127 SAPSKDAP--MFVVGVNEKEY-KPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMTTV 183
                +     F    N +E    +   V       + +  + ++  DK+  +      +
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKYKSINKTNKAM 168

Query: 184 HSI 186
           + +
Sbjct: 169 NIL 171

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

 Score =  165 bits (419), Expect = 4e-51
 Identities = 72/171 (42%), Positives = 104/171 (60%), Gaps = 9/171 (5%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           +K+GINGFGRIGR V R+   R  VE+  +ND       + ++ KYDS++ ++       
Sbjct: 1   MKVGINGFGRIGRQVFRILHSR-GVEVALIND-LTDNKTLAHLLKYDSIYHRFPGE--VA 56

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
            D++ L    K +     ++P+EIPWA+ G   V+ESTGVFTD DKA AHL+GGAKKV+I
Sbjct: 57  YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116

Query: 127 SAPSKDAPM-FVVGVNEKEYKPELD-IVSNASCT---TNCLAPLAKVIHDK 172
           +AP+K   +  V+GVN + Y P    I+SNAS      N +A L +++  K
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} Length = 173

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

 Score =  162 bits (410), Expect = 1e-49
 Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 22/187 (11%)

Query: 7   IKIGINGFGRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           I++ ING+GRIGR + R   +     D+E+VA+ND         ++ +YD+ HG++    
Sbjct: 2   IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND-LGDPKTNAHLTRYDTAHGKFPGT- 59

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
           + V     ++ G+K + V   RNP ++PW     + V+E TG FT K+KA AH+KGGAKK
Sbjct: 60  VSVNGSYMVVNGDK-IRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKK 118

Query: 124 VVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
           V+ISAP         V GVN    K    ++SNA               +++G    ++ 
Sbjct: 119 VIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEWGFSNRMLD 164

Query: 182 TVHSITA 188
           T  ++ +
Sbjct: 165 TTVALMS 171

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  159 bits (404), Expect = 7e-49
 Identities = 33/179 (18%), Positives = 61/179 (34%), Gaps = 16/179 (8%)

Query: 6   KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           K+K+G+NG+G IG+ VA    ++DD+EL+ +       D+  Y  K   +       E  
Sbjct: 2   KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITK--TKPDFEAYRAKELGIPVYAASEEFI 59

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            + EK            GF     +       + +V++T           + K G K + 
Sbjct: 60  PRFEKE-----------GFEVAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIF 108

Query: 126 ISAPSKDA--PMFVVGVNEKEY-KPELDIVSNASCTTNCLAPLAKVIHDKFGIVEGLMT 181
                 D     FV   N +         V       + +  + ++      I +   +
Sbjct: 109 QGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWDSIKKTNKS 167

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  145 bits (367), Expect = 3e-43
 Identities = 29/191 (15%), Positives = 67/191 (35%), Gaps = 32/191 (16%)

Query: 7   IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKV 66
           + + +NG+G IG+ VA   +++ D++LV V     + +      +   ++         V
Sbjct: 2   VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIY---------V 52

Query: 67  KDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI 126
             +    F E  + V        +      ++ VV++T           +L+   +  + 
Sbjct: 53  PQQSIKKFEESGIPV-----AGTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIF 106

Query: 127 SAPSKDA---PMFVVGVNEKEY--KPELDIVSNASCTTNCLAPL------------AKVI 169
               K       F    N  E   K  + +VS +      +  +             ++ 
Sbjct: 107 QGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRIT 166

Query: 170 HDKFGIVEGLM 180
           ++  GI++G +
Sbjct: 167 NESLGILKGYL 177

>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} Length = 165

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

 Score =  134 bits (339), Expect = 3e-39
 Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 15/150 (10%)

Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
           SC T  L    K +HD FGI +     V                  +  +     IIP+ 
Sbjct: 1   SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGA-----------DPAQVSKGPINAIIPNP 49

Query: 216 TGAAKAVGK-VLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
                  G  V   L+  +  M+  VPT  +   ++ V +E+  T ++I +  ++     
Sbjct: 50  PKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVI 109

Query: 275 LKGI---LGYTEEDVVSTDFVGDSRSSIFD 301
           L      L  T E +     +G SR+ +F+
Sbjct: 110 LISAEDGLTSTAEIMEYAKELGRSRNDLFE 139

>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  131 bits (330), Expect = 6e-38
 Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 21/177 (11%)

Query: 157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST 216
           C T  L      ++    + +   T V      +         + + G   S    P++ 
Sbjct: 1   CNTTALLRTICTVNKVSKVEKVRATIVRRAADQK---------EVKKGPINSLVPDPATV 51

Query: 217 GAA--KAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGK 274
            +   K V  V+  L   +  M+   PT  + +  + + L+ +   ++I + ++      
Sbjct: 52  PSHHAKDVNSVIRNL--DIATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIV 109

Query: 275 LKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFV--KLVSWYDNEWGYSSRV 329
           L       E      +   D +    D      + +  +    +   D+E      V
Sbjct: 110 LISSKYDAEATAELVEVARDLKRDRND------IPEVMIFSDSIYVKDDEVMLMYAV 160

>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 162

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 23/149 (15%), Positives = 48/149 (32%), Gaps = 16/149 (10%)

Query: 156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSS 215
           SC T  L      I +    V             ++  D          R     I P+ 
Sbjct: 1   SCNTTGLVRTLSAIREYADYVY--------AVMIRRAAD-----PNDTKRGPINAIKPTV 47

Query: 216 TGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKL 275
              +     V   +   +  M+F VPT  + V  + V L+K  T +++ +  +  +   L
Sbjct: 48  EVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLL 107

Query: 276 KGI---LGYTEEDVVSTDFVGDSRSSIFD 301
                    T + +     +    +++++
Sbjct: 108 FEKEKGFDSTAQIIEFARDLHREWNNLYE 136

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 5  KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKH 61
            I++ I G+G +GR V ++  ++ D++LV +     + D  T +F    V      
Sbjct: 2  TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADD 58

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 9/57 (15%), Positives = 18/57 (31%)

Query: 6  KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
          +I+IG+ G   I R V+R      +  +  V    +                +   +
Sbjct: 1  QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGS 57

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 12/131 (9%)

Query: 4   DKKIKIGINGF-GRIGRLVARVALQRDDVELVAVND----PFISTDYMTYMFKYD-SVHG 57
           D  I++ I G  GR+GR + + AL  + V+L A  +      + +D           V  
Sbjct: 2   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61

Query: 58  QWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHL 117
           Q   + +K   +  + F               + + +   + +V  T  F +  K A   
Sbjct: 62  QSSLDAVKDDFDVFIDFTRPEGT------LNHLAFCRQHGKGMVIGTTGFDEAGKQAIRD 115

Query: 118 KGGAKKVVISA 128
                 +V +A
Sbjct: 116 AAADIAIVFAA 126

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

 Score = 40.4 bits (94), Expect = 7e-05
 Identities = 27/171 (15%), Positives = 50/171 (29%), Gaps = 30/171 (17%)

Query: 5   KKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNE 63
           +K+K+ I G G IG  L+ +V      +E+ A+    I               G      
Sbjct: 3   QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG--IDAASDGLARAQR--MGVTTTYA 58

Query: 64  LKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKK 123
                 K   F +             +                  ++        G   +
Sbjct: 59  GVEGLIKLPEFADIDFVFDATSASAHV-----------------QNEALLRQAKPG--IR 99

Query: 124 VVISAPSKDAPMFVVGVNEKE--YKPELDIVSNASCTT----NCLAPLAKV 168
           ++   P+   P  V  VN +E   K  +++V+ A          LA   ++
Sbjct: 100 LIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLDIMTSAALATAERM 150

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 6/39 (15%), Positives = 12/39 (30%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP 39
          +    K  + + G GR G +  R          + +   
Sbjct: 2  ITNSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF 40

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 5  KKIKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
          +KI++GI G G   R +   AL+      E+ AV     S          +         
Sbjct: 2  RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEE 61

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 17/175 (9%), Positives = 41/175 (23%), Gaps = 6/175 (3%)

Query: 7   IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           +   I G  G  G  +     +   + + A+     S D    +              L+
Sbjct: 2   LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQ 61

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
              +      +  V      +      A    +       +               K   
Sbjct: 62  PMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYE--KYYG 119

Query: 126 ISAPSKDAPMFVVGVNEKEYKPELD---IVSNASCTTNCLAPLAKVIHDKFGIVE 177
            +    +     V    +    +L+   +++         A   +  + +FG  E
Sbjct: 120 FTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGFAE 174

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 1/58 (1%)

Query: 6  KIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHN 62
          K++IG+ G G I +      L    D  L     P  +                    
Sbjct: 1  KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL 58

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 21/174 (12%), Positives = 48/174 (27%), Gaps = 13/174 (7%)

Query: 7   IKIGING-FGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELK 65
           I+ GI G  G  G  + R+     + ++  ++    +   +  +F           N + 
Sbjct: 2   IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPS------TLENSIL 55

Query: 66  VKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV 125
            + +   +     V              +      +   G     D    + +       
Sbjct: 56  SEFDPEKVSKNCDVLFTALPAGASYDLVRELKGVKIIDLGADFRFDDPGVYRE----WYG 111

Query: 126 ISAPSKDAPMFVVGVNE--KEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVE 177
                 +    V G+ E  +E      +V N            + ++  FG+ E
Sbjct: 112 KELSGYENIKRVYGLPELHREEIKNAQVVGNPGLVKGASGQAVQNMNIMFGLDE 165

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 1/63 (1%)

Query: 1  MAGDKKIKIGINGFGRIGRLVARVALQR-DDVELVAVNDPFISTDYMTYMFKYDSVHGQW 59
          M  D++    I G G+                 + A+         +            +
Sbjct: 28 MPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY 87

Query: 60 KHN 62
           ++
Sbjct: 88 DYS 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d3cmco2	163	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1u8fo2	164	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1rm4a2	163	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2g82a2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1k3ta2	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1obfo2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	100.0
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.97
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.91
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	99.9
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	99.9
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	99.89
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.89
d1cf2o2	165	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.86
d1b7go2	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.83
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	99.72
d2hjsa2	190	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	99.69
d1mb4a2	222	Aspartate beta-semialdehyde dehydrogenase {Vibrio	99.69
d1t4ba2	221	Aspartate beta-semialdehyde dehydrogenase {Escheri	99.67
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	99.67
d2gz1a2	202	Aspartate beta-semialdehyde dehydrogenase {Strepto	99.58
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	99.55
d2g17a2	155	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.54
d2cvoa2	165	Putative semialdehyde dehydrogenase {Rice (Oryza s	99.48
d2czca1	162	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.44
d1vkna2	163	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	99.43
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.9
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	98.54
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.36
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.34
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.3
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.23
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.22
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	98.15
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.11
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.79
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.69
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	97.41
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	97.38
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.04
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.84
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	96.58
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.39
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.24
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.16
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.15
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.13
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.05
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.02
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.01
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.88
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.88
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.79
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.67
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.56
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.42
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.33
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.11
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.68
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	94.61
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.59
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.58
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.52
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	94.46
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.43
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.1
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.08
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.95
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.9
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.9
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.77
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	93.52
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.38
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.11
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	93.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	93.0
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.76
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.63
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	92.49
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.35
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	92.33
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.27
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.97
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.91
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	91.73
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.69
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	91.68
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.67
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.35
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	91.28
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	91.19
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	91.18
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.01
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.64
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	90.63
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.55
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	90.53
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	90.38
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	90.13
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	89.65
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	89.37
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	89.28
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	88.9
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.87
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	88.61
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.58
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.06
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	88.01
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	87.77
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	87.75
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	87.67
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.61
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.3
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	87.04
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.78
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	86.62
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	86.47
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	86.4
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	86.24
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.81
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.68
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.66
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.06
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	84.76
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	84.65
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	84.33
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	84.24
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.01
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	83.61
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	83.58
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	83.0
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	82.94
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.65
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	82.65
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	82.53
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.31
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	82.23
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	82.22
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	81.99
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	81.23
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	81.13
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	80.91
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	80.84
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	80.58
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.37
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.24
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	80.1

>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=100.00  E-value=3.1e-56  Score=377.30  Aligned_cols=163  Identities=59%  Similarity=0.917  Sum_probs=161.2

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEE
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  236 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~  236 (341)
                      ||||||||++|+||++|||++|+|||+|+||++|+++|+++ +++|+||++++||||++||+++++.+++|||+||+.++
T Consensus         1 CTTNclaP~~kvl~~~fgI~~g~mTTvHa~T~~Q~l~D~~~-~d~Rr~Raa~~niIPtsTgAakav~~vlP~L~gkl~g~   79 (163)
T d3cmco2           1 CTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPH-KDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGM   79 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBTTTCCEEEECSHHHHHHHHCGGGTTTEEEE
T ss_pred             ChhHHHHHHHHHHHhhcCeeEEEEEeeccccCcccCCCCCC-cchhccchHhhCCCCccccHHHHHHHhhHHhCCCcceE
Confidence            99999999999999999999999999999999999999997 69999999999999999999999999999999999999


Q ss_pred             EEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEE
Q 019445          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV  316 (341)
Q Consensus       237 ~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~  316 (341)
                      ++|||+++|+++|+++++++++++|||+++|++++++++++|++|+++|+||+||+|++||+|||+.+|.+++++++|++
T Consensus        80 a~RVPt~~vS~vDlt~~l~k~~t~e~in~~~k~as~~~lkgil~~t~~plVSsDf~g~~~SsI~D~~~t~v~~~~~vKv~  159 (163)
T d3cmco2          80 AMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVV  159 (163)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTEEEEE
T ss_pred             EEecCCCcceeEEEEEEecCcCCHHHHHHHHHHHhcCCccCcceeeecccchhhccCCCccEEEEcccCEEECCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q 019445          317 SWYD  320 (341)
Q Consensus       317 ~wyd  320 (341)
                      +|||
T Consensus       160 aWYD  163 (163)
T d3cmco2         160 SWYD  163 (163)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9998

>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=100.00  E-value=7e-56  Score=374.61  Aligned_cols=164  Identities=77%  Similarity=1.161  Sum_probs=162.1

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEE
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  236 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~  236 (341)
                      ||||||||++|+|+++|||+.|+|||+|+||++|.++|+++++++|+||++++||||++||+++++.+++|||+||+.++
T Consensus         1 CTTNclaP~~kvl~~~fgI~~g~mTTiHayT~~Q~l~D~~~~~~~Rr~Raa~~niIPttTgAakAv~~vlP~L~gkl~g~   80 (164)
T d1u8fo2           1 CTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGM   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSBSSSCCCTTCGGGGSBTTTCCEEEECCTTTTHHHHSGGGTTSEEEE
T ss_pred             ChhHHHHHHHHHHHhhcCeeEEEEEeeecccCccccccccccCccccCCCCcCcceeccccHHHHHHHhChhhcCCccce
Confidence            99999999999999999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             EEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEE
Q 019445          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV  316 (341)
Q Consensus       237 ~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~  316 (341)
                      ++|||+++|+++|++++++++++.|||+++|++++++++++|++|+++|+||+||+|++||||||+.+|.+++++++|++
T Consensus        81 a~RVPt~~vS~vDlt~~l~k~~t~eevn~~l~~aa~~~lk~Il~~~~eplVSsDf~g~~~S~IvD~~~T~v~~~~~vKv~  160 (164)
T d1u8fo2          81 AFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLI  160 (164)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEETTTCEEEETTEEEEE
T ss_pred             EEecCCCCcceeeEEEEEcCcCCHHHHHHHHHHHhcCCccCcccccccceeecccCCCCccEEEEccCCEEECCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q 019445          317 SWYD  320 (341)
Q Consensus       317 ~wyd  320 (341)
                      +|||
T Consensus       161 aWYD  164 (164)
T d1u8fo2         161 SWYD  164 (164)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            9998

>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=4.5e-55  Score=370.97  Aligned_cols=163  Identities=50%  Similarity=0.823  Sum_probs=161.0

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEE
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  236 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~  236 (341)
                      ||||||||++|+||++|||++|+|||+|+||++|.++|+++ +++|+||++++||||++||+++++.+++|||+||+.++
T Consensus         1 CTTN~laP~~kvl~~~fgI~~g~mtTvHa~T~~Q~l~D~~~-~d~rr~Raa~~niIPt~Tga~kai~~vlP~L~gki~g~   79 (163)
T d1rm4a2           1 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGI   79 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCEEEEEEEEEEECCTTSCSSSCCC-SSTTTTSCTTTCCEEECCCHHHHHHHHCGGGTTTEEEE
T ss_pred             ChhHhHHHHHHHHHHhCCeeEEEEEEeccccCCcCcccCCC-CcccccchhhcccCcCcccHHHHHHHhChhhcCCcceE
Confidence            99999999999999999999999999999999999999976 79999999999999999999999999999999999999


Q ss_pred             EEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEE
Q 019445          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV  316 (341)
Q Consensus       237 ~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~  316 (341)
                      ++|||+++|+++|++++++++++.|||+++|++++++++++|++|+++|+||+||+|++||+|||+.+|.+++++++|++
T Consensus        80 a~RVPt~nvS~vDl~~~l~k~~t~eein~~~~~as~~~~~~il~~~~eplVSsDf~g~~~SsI~D~~~t~v~~~~lvKi~  159 (163)
T d1rm4a2          80 ALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVI  159 (163)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHTTTTTTTEEEECSCCCGGGGTTCCSSEEEEGGGCEEETTTEEEEE
T ss_pred             EEecCCCCceeEEEEEeccCCCCHHHHHHHHHHHhhCcccCccccccCccccccccCCCCcEEEEcccCEEECCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeC
Q 019445          317 SWYD  320 (341)
Q Consensus       317 ~wyd  320 (341)
                      +|||
T Consensus       160 ~WYD  163 (163)
T d1rm4a2         160 AWYD  163 (163)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            9998

>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=1.2e-53  Score=362.29  Aligned_cols=162  Identities=54%  Similarity=0.825  Sum_probs=159.0

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeEE
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM  236 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~~  236 (341)
                      ||||||||++|+|+++|||++|.|||+|+||++|+++|+++ +++|++|++++||||++||+++++.+++|||+||+.++
T Consensus         1 CTTNclaP~~kil~~~fgI~~g~~tTiH~~t~~Q~l~D~~~-~d~rr~Rsa~~niIPt~Tgaakai~~vlP~L~gki~g~   79 (162)
T d2g82a2           1 CTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPH-KDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGM   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSBSSSCCC-SSTTTTSBGGGCCEEECCCHHHHHHHHCGGGTTSEEEE
T ss_pred             ChhHhHHHHHHHHHhhcCeeEEEEEeeccccCccccCCCCC-CCccccchhhcccCcccCccchhhchhhHhhCCCceeE
Confidence            99999999999999999999999999999999999999987 69999999999999999999999999999999999999


Q ss_pred             EEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEEE
Q 019445          237 SFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLV  316 (341)
Q Consensus       237 ~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~~  316 (341)
                      ++|||+++|+++|++++++++++.|||+++|++++++++++|++|+|+|+||+||+|++||+|||+.+|.++ |+++|++
T Consensus        80 a~RVPt~nvS~vDl~~~l~k~~s~eeIn~~lk~aa~~~~~~il~~~~eplVS~Df~g~~~S~I~D~~~T~v~-g~~vKi~  158 (162)
T d2g82a2          80 ALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKAL-GNMVKVF  158 (162)
T ss_dssp             EEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCEEE-TTEEEEE
T ss_pred             EEeecccccceEEEEEEecCcCCHHHHHHHHHHHccCCCcCeeeEecccceehhcCCCCCceEEEhhHceEe-CCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988 5799999


Q ss_pred             EEeC
Q 019445          317 SWYD  320 (341)
Q Consensus       317 ~wyd  320 (341)
                      +|||
T Consensus       159 ~WYD  162 (162)
T d2g82a2         159 AWYD  162 (162)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9998

>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=9.9e-54  Score=365.79  Aligned_cols=164  Identities=63%  Similarity=1.030  Sum_probs=160.1

Q ss_pred             CCccceecchhHHH-hhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCcee
Q 019445          156 SCTTNCLAPLAKVI-HDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLT  234 (341)
Q Consensus       156 ~C~tt~Lapllk~L-~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~  234 (341)
                      |||||||||++|+| |++|||++++|||+|+||++|+++|+++++++|+||++++||||++||+++++.+++|||+||+.
T Consensus         1 SCTTNclaP~~kvL~~~~fgI~~g~mtTvHa~T~~Q~~lD~~~~~d~Rr~Raa~~nIIPtsTgAakav~~vlP~L~gKi~   80 (169)
T d1k3ta2           1 SCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLT   80 (169)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCSEEEEEEEEECCTTSBSSSCCCSSCTGGGSBGGGCCEEEECSHHHHHHHHSGGGTTTEE
T ss_pred             CcHHHHHHHHHHHhhccccceeEEEEEEeccccCCCcccccccCCCCcCccccccccccccchHHHHHHHhccccCCCcc
Confidence            79999999999996 89999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             EEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceec----C
Q 019445          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALS----K  310 (341)
Q Consensus       235 ~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~----~  310 (341)
                      ++++|||+++|+++|++++++++++.|||+++|++++++++++|++|+++|+||+||+|++||+|||+.+|.+++    +
T Consensus        81 g~a~RVPt~nvS~vDLt~~l~k~~t~eein~~~~~as~~~~kgil~~t~eplVS~Df~g~~~SsI~D~~~t~v~~~~~~~  160 (169)
T d1k3ta2          81 GMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKER  160 (169)
T ss_dssp             EEEEEESCSSCEEEEEEEECSSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEHHHHHHSSCTTCS
T ss_pred             ceeecccccccceeeeeeeccccchhhHHHHHHHHHhhCCCCCceeEecCcEEeeccCCCCcceEEEcccceecccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998765    8


Q ss_pred             CeEEEEEEe
Q 019445          311 NFVKLVSWY  319 (341)
Q Consensus       311 ~~~k~~~wy  319 (341)
                      +++|+++||
T Consensus       161 ~lvKv~aWY  169 (169)
T d1k3ta2         161 RFFKIVSWY  169 (169)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEEeC
Confidence            999999999

>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=100.00  E-value=1.3e-52  Score=356.57  Aligned_cols=162  Identities=51%  Similarity=0.803  Sum_probs=158.3

Q ss_pred             CCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChhHHHHHHhhhhcCceeE
Q 019445          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTG  235 (341)
Q Consensus       156 ~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~~~~~~~lpel~~~l~~  235 (341)
                      |||||||||++|+||++|||++++|||+|++|++|.++|+++ +++|+||++.+||||++||+++++.+++|||+||+.+
T Consensus         1 SCTTN~laP~~kvl~~~fgI~~g~mtTvHa~t~~Q~l~D~~~-~d~r~~Raa~~niIP~sTgAakav~~viP~L~gki~g   79 (162)
T d1obfo2           1 SCTTNCLAPLVKPLNDKLGLQDGLMTTVHAYTNNQVLTDVYH-EDLRRARSATMSMIPTKTGAAAAVGDVLPELDGKLNG   79 (162)
T ss_dssp             CHHHHHHHHHHHHHHHHTCEEEEEEEEEEECCTTSCSSCCCC-SSTTTTSCTTTCCEEEECCHHHHHHHHCGGGTTSEEE
T ss_pred             CcHHHHHHHHHHHHHhhcCeeEEEEEEeeccccccccccccc-ccccccccccceeeeecCCchhhHhHhChhhCCCCCc
Confidence            799999999999999999999999999999999999999986 6999999999999999999999999999999999999


Q ss_pred             EEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCCCcceecCCeEEE
Q 019445          236 MSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAKAGIALSKNFVKL  315 (341)
Q Consensus       236 ~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~~~~~~~~~~k~  315 (341)
                      +++|||+++++++|++++++++++.|||+++|++++++++++|++|+|+|+||+||+|++||+|||+.+|. ++|+++|+
T Consensus        80 ~a~RVPt~~vS~vDLt~~l~k~~t~eein~~l~~aa~~~~~~il~~t~eplVSsDf~g~~~S~I~D~~~t~-v~g~~vKi  158 (162)
T d1obfo2          80 YAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTK-VSGRLVKV  158 (162)
T ss_dssp             EEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHHHHHTTTTTTEEEECSCCCGGGGTTCCCSEEEEGGGCE-EETTEEEE
T ss_pred             eEEeccccCcceeeEEEEecCCCCHHHHHHHHHHHhhCcccCcccccCCccCCccccCCCceeEEcHHHce-ECCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986 57899999


Q ss_pred             EEEe
Q 019445          316 VSWY  319 (341)
Q Consensus       316 ~~wy  319 (341)
                      ++||
T Consensus       159 ~~WY  162 (162)
T d1obfo2         159 SSWY  162 (162)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9999

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=100.00  E-value=1.3e-48  Score=334.85  Aligned_cols=167  Identities=56%  Similarity=0.909  Sum_probs=160.5

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      ||||||||||||.++|++++++ +++++||++..+.++++|||+|||+||+|+ .+++.+++ .|.++|+.+.++++.+|
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~-~~ivaINd~~~~~~~~~yLlkyDS~hG~~~-~~i~~~~~-~l~ing~~I~~~~~~~p   78 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMG-AQVVAVNDPFIALEYMVYMFKYDSTHGMFK-GEVKAEDG-ALVVDGKKITVFNEMKP   78 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHCCTTTCCCS-SCEEEETT-EEEETTEEEEEECCSSG
T ss_pred             eEEEECCcHHHHHHHHHHHhCC-CcEEEECCCCcCHHHHHHHHhcccccCCcC-CeEEEeCC-EEEECCEEEEEEecCCh
Confidence            7999999999999999999886 899999998789999999999999999999 99998887 99999999999999999


Q ss_pred             CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecchhH
Q 019445           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPLAK  167 (341)
Q Consensus        88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lapllk  167 (341)
                      ++++|+..++|+|+||||.|.+.+.+..|+++|+|+|++|||+.|.|++|||+|+++|++++++|||+|||||||||++|
T Consensus        79 ~~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~iV~GVN~~~~~~~~~IIS~aSCTtn~laP~~k  158 (169)
T d1dssg1          79 ENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVID  158 (169)
T ss_dssp             GGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSSCBCCTTTSGGGCCTTCCEEECCCTTHHHHHHHHH
T ss_pred             HHCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccccceeeecccccccCCCCCEEEChhHHHHHHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999999998778999999999999999999


Q ss_pred             HHhhhcceeE
Q 019445          168 VIHDKFGIVE  177 (341)
Q Consensus       168 ~L~~~fgi~~  177 (341)
                      +|+++|||++
T Consensus       159 ~l~~~fgIe~  168 (169)
T d1dssg1         159 LIKHMQKVDS  168 (169)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHhcCccc
Confidence            9999999975

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=100.00  E-value=9.3e-48  Score=330.08  Aligned_cols=168  Identities=44%  Similarity=0.728  Sum_probs=159.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      +||||||||||||.++|+++++|++++++||++ .+.++++|||+|||+||+|+ .+++.+++ .|.++|+.+.++++++
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd~-~d~~~~ayll~yDS~hG~~~-~~v~~~~~-~l~i~g~~i~i~~~~~   78 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL-TDANTLAHLLKYDSVHGRLD-AEVSVNGN-NLVVNGKEIIVKAERD   78 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEECCSS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC-CCHHHHhhhhcccccCCccc-ccccccCC-CEEeCCcceeeEecCC
Confidence            799999999999999999999999999999998 69999999999999999999 99998887 9999999999999999


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-CCcEEeCCCCccceecc
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCTTNCLAP  164 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt~Lap  164 (341)
                      |++++|+..++|+|+||||.|.+++.+..|+++|+|+|++|||+.| ++++|||+|+++|++ ++++|||+|||||||+|
T Consensus        79 p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d~~~t~V~GvN~~~~~~~~~~iIS~aSCTtn~laP  158 (171)
T d3cmco1          79 PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHR  158 (171)
T ss_dssp             GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCTTHHHHHH
T ss_pred             HHHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecccccccceeeeccchheecCCCCeEEEehhHHHhHHHH
Confidence            9999999999999999999999999999999999999999999887 669999999999985 57999999999999999


Q ss_pred             hhHHHhhhcceeEEE
Q 019445          165 LAKVIHDKFGIVEGL  179 (341)
Q Consensus       165 llk~L~~~fgi~~~~  179 (341)
                      ++|+|  +|||++|+
T Consensus       159 v~kvl--~fgi~~G~  171 (171)
T d3cmco1         159 VVDLA--AYIASKGL  171 (171)
T ss_dssp             HHHHH--HHHHHTCC
T ss_pred             HHHHH--HhhHhhCC
Confidence            99999  49998763

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.5e-47  Score=325.06  Aligned_cols=162  Identities=47%  Similarity=0.803  Sum_probs=154.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++||||||||||||.++|+++++|++++++|||. .+.++++|||+|||+||+|+ +++..+++ .|.++|+.+++++++
T Consensus         1 tikigINGFGRIGR~v~R~~~~~~~i~ivaINd~-~~~~~~ayLl~yDSvhG~~~-~~v~~~~~-~l~ing~~I~i~~~~   77 (166)
T d1gado1           1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL-LDADYMAYMLKYDSTHGRFD-GTVEVKDG-HLIVNGKKIRVTAER   77 (166)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CeEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC-CCHHHHhhhheecCCCCCcC-CeEEEeCC-EEEECCEEEEEEeCC
Confidence            3799999999999999999999999999999997 79999999999999999999 99998887 999999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap  164 (341)
                      +|++++|+..++|+|+||||.|.+++.++.|+++|+|+|++|||+.| +|++|||+|+++|+ .+++|||+|||||||+|
T Consensus        78 ~p~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d~~~~iV~GvN~~~~~-~~~iiS~aSCTTnclaP  156 (166)
T d1gado1          78 DPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYA-GQDIVSNASNETGYSNK  156 (166)
T ss_dssp             SGGGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCC-SCSEEECCCTTHHHHHH
T ss_pred             ChHHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccccccCCEEEeCccccccC-CCCEEEeccHHHhHHHH
Confidence            99999999899999999999999999999999999999999999987 99999999999998 47899999999999999


Q ss_pred             hhHHHhh
Q 019445          165 LAKVIHD  171 (341)
Q Consensus       165 llk~L~~  171 (341)
                      ++|+|+.
T Consensus       157 v~kvl~~  163 (166)
T d1gado1         157 VLDLIAH  163 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999853

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=100.00  E-value=2.8e-46  Score=320.22  Aligned_cols=164  Identities=52%  Similarity=0.938  Sum_probs=157.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||||||||||.++|+++++|++++++||++..+.++++|||+|||+||+|+ .+++.+++ .|.++|+.+.+++++
T Consensus         1 kikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~~~~I~~~~~~   78 (169)
T d1u8fo1           1 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFH-GTVKAENG-KLVINGNPITIFQER   78 (169)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEETTEEEEEECCS
T ss_pred             CcEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcC-CeEEEECC-EEEECCEEEEEEECC
Confidence            5899999999999999999999999999999998688999999999999999999 99998887 999999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCCCCcEEeCCCCccceecch
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPELDIVSNASCTTNCLAPL  165 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lapl  165 (341)
                      +|++++|+..++|+|+||||.|.+++.+..|+++|+|+|++|||+.|.|++|||+|+++|+++.++|||+||||||++|+
T Consensus        79 ~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~d~~tiV~GvN~~~~~~~~~iIS~aSCTtn~~aPv  158 (169)
T d1u8fo1          79 DPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASNEFGYSNRV  158 (169)
T ss_dssp             SGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSSSCBCCTTTTGGGCCTTCSEEECCCTTHHHHHHH
T ss_pred             ChhhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccccccceEEeecCHHHcCCCCCEEECccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998789999999999999999


Q ss_pred             hHHHhh
Q 019445          166 AKVIHD  171 (341)
Q Consensus       166 lk~L~~  171 (341)
                      +++|..
T Consensus       159 ~~vl~~  164 (169)
T d1u8fo1         159 VDLMAH  164 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999853

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=9.9e-46  Score=316.64  Aligned_cols=163  Identities=52%  Similarity=0.853  Sum_probs=156.0

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      ||||||||||||.++|+++++|++++++||++..+.++++|||+|||+||+|+ .++...++ .|.++|+.+.++++++|
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVTHADG-FLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCS-SCEEEETT-EEEESSCEEEEECCSSG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccce-eeeccCCc-eEEecCcEEEEEeCCCh
Confidence            89999999999999999999999999999998789999999999999999999 89988887 89999999999999999


Q ss_pred             CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceecchh
Q 019445           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAPLA  166 (341)
Q Consensus        88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lapll  166 (341)
                      ++++|+..++|+|+||||.|.+++.++.|+++|+|+|++|||+.| +|++|||+|++.|++++++|||+||   ||+|++
T Consensus        80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~tiV~GVN~~~~~~~~~IIS~AS~---~~ap~~  156 (166)
T d2b4ro1          80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSN  156 (166)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSSSCCBCCTTTTGGGCCTTCCEEECCCT---THHHHH
T ss_pred             HHccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecccccccceeeeecchhhcCCCCCEEEChhH---HHHHHH
Confidence            999999999999999999999999999999999999999999885 8999999999999987899999998   468999


Q ss_pred             HHHhhhcce
Q 019445          167 KVIHDKFGI  175 (341)
Q Consensus       167 k~L~~~fgi  175 (341)
                      |+||++|||
T Consensus       157 kvl~~~fgI  165 (166)
T d2b4ro1         157 RVLDLAVHI  165 (166)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHcCc
Confidence            999999998

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=4.4e-45  Score=314.10  Aligned_cols=166  Identities=39%  Similarity=0.675  Sum_probs=152.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            7 IKIGINGFGRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |||||||||||||.++|+++++  +++++|+||++ .+.++++|||+|||+||+|+ .++...++..+.+||+.+.++++
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~-~~~~~~ayLlkyDSvhG~~~-~~i~~~~~~~~~ing~~I~~~~~   78 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT-GGVKQASHLLKYDSILGTFD-ADVKTAGDSAISVDGKVIKVVSD   78 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT-TCHHHHHHHHHCCTTTCSCS-SCEEECTTSEEEETTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC-CCHHHHHHHHhcCccccccc-ceeEecCCcceEECCEEEEEecC
Confidence            6999999999999999998864  45999999998 68999999999999999999 88877655256789999999999


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccce--
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNC--  161 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~--  161 (341)
                      ++|++++|++.++|+|+||||.|.+++.+..|+++|+|+|++|||+.| +|++|||+|++.|++++++|||+||||+|  
T Consensus        79 ~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k~~~~tiV~GVN~~~~~~~~~iIS~aSCTtn~~~  158 (172)
T d1rm4a1          79 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQ  158 (172)
T ss_dssp             SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCBSSCCBCCTTTTGGGCCTTCSEEECCCTTHHHHH
T ss_pred             CChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeecccccceeeEEeecchhhcCCCCCEEEcccchhccHh
Confidence            999999999889999999999999999999999999999999999874 89999999999998788999999999655  


Q ss_pred             -ecchhHHHhhhcc
Q 019445          162 -LAPLAKVIHDKFG  174 (341)
Q Consensus       162 -Lapllk~L~~~fg  174 (341)
                       |+|+++.||++|.
T Consensus       159 ~l~pv~~vi~~~f~  172 (172)
T d1rm4a1         159 RVVDLADIVANKWQ  172 (172)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HhHHHHHHHHhhcC
Confidence             9999999999884

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2e-45  Score=321.28  Aligned_cols=171  Identities=42%  Similarity=0.729  Sum_probs=153.7

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcC----CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC-------cceEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQR----DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE-------KTLLF   74 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~----p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~-------~~l~i   74 (341)
                      ++||||||||||||.++|+++++    +++++++||++..+.++++|||+|||+||+|. ++++.+++       +.+.+
T Consensus         2 ~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~-~~v~~~~~~~~~~~~~~~i~   80 (190)
T d1k3ta1           2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFK-YEVTTTKSSPSVAKDDTLVV   80 (190)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECS-SCEEEECSSTTCSSCCEEEE
T ss_pred             CeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCC-ceEEEccCccccccccceEE
Confidence            58999999999999999988754    57999999999889999999999999999999 88876432       24666


Q ss_pred             CCEEE-EEEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-CCcE
Q 019445           75 GEKPV-AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDI  151 (341)
Q Consensus        75 ~g~~i-~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~~~i  151 (341)
                      +|+.+ .+.++++|++++|+..++|+|+||||.|.+++.++.|+++|+|+|++|||..+ +|++|||+|++.|++ +++|
T Consensus        81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~~tiV~GVN~~~y~~~~~~I  160 (190)
T d1k3ta1          81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHV  160 (190)
T ss_dssp             TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSSCEECCTTTTGGGCCTTTCSE
T ss_pred             cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCCcccCCeEEeccCHhhcCCccCcE
Confidence            77655 45568899999999999999999999999999999999999999999999874 899999999999986 5789


Q ss_pred             EeCCCCccceecchhHHHhhhcceeE
Q 019445          152 VSNASCTTNCLAPLAKVIHDKFGIVE  177 (341)
Q Consensus       152 Isnp~C~tt~Lapllk~L~~~fgi~~  177 (341)
                      ||++|||||||+|++|+|++.||+++
T Consensus       161 IS~ASCTtn~lapv~kvi~~~f~~~~  186 (190)
T d1k3ta1         161 VSNADNEWGYSHRVVDLVRHMASKDR  186 (190)
T ss_dssp             EECCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEchhHhhhHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999875

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.4e-44  Score=309.46  Aligned_cols=164  Identities=39%  Similarity=0.699  Sum_probs=154.9

Q ss_pred             eEEEEccCHHHHHHHHHHHc--CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            8 KIGINGFGRIGRLVARVALQ--RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~--~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ||||||||||||.++|.+++  +|++|+|+|||. .+.++++|||+|||+||+|+ .+++.+++ .|.++|+.+.+++++
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~-~~~e~~ayLlkyDS~hG~~~-~~v~~~~~-~l~ing~~I~~~~~~   78 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL-TDTKTLAHLLKYDSVHKKFP-GKVEYTEN-SLIVDGKEIKVFAEP   78 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS-SCHHHHHHHHHCCTTTCCCS-SCEEECSS-EEEETTEEEEEECCS
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccC-ccHHHHHHHHhccccccccC-ceEEEECC-EEEECCEEEEEEeCC
Confidence            89999999999999999875  678999999998 79999999999999999999 89998877 999999999999999


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCCCCcEEeCCCCccceecc
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKPELDIVSNASCTTNCLAP  164 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~~~~iIsnp~C~tt~Lap  164 (341)
                      +|++++|++.++|+|+||||.|.+++.+.+|+++|+|+|++|||+.| ++++|||+|+++|++++++|||+|||++|++|
T Consensus        79 ~p~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~kd~~~tiV~GvN~~~~~~~~~iiS~aScttn~~a~  158 (169)
T d1hdgo1          79 DPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNR  158 (169)
T ss_dssp             SGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTCCEEECCCTTHHHHHH
T ss_pred             ChhhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecccCCCcceeEEecchhhcCCcCcEEEchhHhhhHHHH
Confidence            99999999889999999999999999999999999999999999986 78999999999999888999999999999999


Q ss_pred             hhHHHhhhcc
Q 019445          165 LAKVIHDKFG  174 (341)
Q Consensus       165 llk~L~~~fg  174 (341)
                      ++++|+..+.
T Consensus       159 v~~vi~~l~k  168 (169)
T d1hdgo1         159 VVDTLELLLK  168 (169)
T ss_dssp             HHHHHHHGGG
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=100.00  E-value=1.2e-44  Score=310.65  Aligned_cols=162  Identities=45%  Similarity=0.744  Sum_probs=153.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      |||||||||||||.++|+|.+. ++++++|||. .+.++++|||+|||+||+|+ .++...++ .|.++|+.+.++++++
T Consensus         1 ikigINGfGRIGR~~~R~l~~~-~i~iv~INd~-~~~~~~ayLl~yDS~hG~~~-~~v~~~~~-~l~i~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSR-GVEVALINDL-TDNKTLAHLLKYDSIYHRFP-GEVAYDDQ-YLYVDGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECS-SCHHHHHHHHHCCTTTCSCS-SCEEECSS-EEEETTEEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcC-CCEEEEECCC-cchhhhhheeecccccCccc-cccccccc-eeEecceeEEEEecCC
Confidence            5899999999999999998875 5999999998 78999999999999999999 89988877 8999999999999999


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-CCeeeeccCccccCC-CCcEEeCCCCc---cce
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEKEYKP-ELDIVSNASCT---TNC  161 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-~~~~V~Gvn~~~~~~-~~~iIsnp~C~---tt~  161 (341)
                      |++++|...++|+|+||||.|.+++.++.|+++|+|+|++|||+.| ++++|||+|+++|++ +++||||+|||   |||
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~kd~~~~iV~GvN~~~y~~~~~~IIS~ASCT~~~tN~  156 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANR  156 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTTGGGCCTTTCCEEECCCTTHHHHHH
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhccccceeeeccccccccceeEeeccHHHccCCCCcEEEeccccCccHHH
Confidence            9999999999999999999999999999999999999999999875 789999999999986 47999999999   899


Q ss_pred             ecchhHHHhhh
Q 019445          162 LAPLAKVIHDK  172 (341)
Q Consensus       162 Lapllk~L~~~  172 (341)
                      |||++|.||++
T Consensus       157 laPv~k~i~~k  167 (168)
T d2g82a1         157 VADLVELVLRK  167 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999999875

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=100.00  E-value=7.1e-44  Score=307.03  Aligned_cols=166  Identities=36%  Similarity=0.636  Sum_probs=156.4

Q ss_pred             ceeEEEEccCHHHHHHHHHHHc---CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~---~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      ++||||||||||||.++|++++   ++++|+++||++ .+.++++|||+|||+||+|+ ..+..+++ .+.++|+.+.++
T Consensus         1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~-~~~~~~ayLlkyDS~hG~~~-~~v~~~~~-~l~i~g~~i~i~   77 (173)
T d1obfo1           1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL-GDPKTNAHLTRYDTAHGKFP-GTVSVNGS-YMVVNGDKIRVD   77 (173)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS-SCHHHHHHHHHEETTTEECS-SCEEEETT-EEEETTEEEEEE
T ss_pred             CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC-CChHHHHHhhcccccCCCcC-ceEEeccc-eEEECCEEEEEE
Confidence            3799999999999999999875   568999999998 78999999999999999999 99988887 899999999999


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCCCCcEEeCCCCccc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKPELDIVSNASCTTN  160 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~~~~iIsnp~C~tt  160 (341)
                      ++++|++++|+..++|+|+||||.|.+++.+.+|+++|+|+|+||||+.+  +|++|||+|++.|+++++||||++    
T Consensus        78 ~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~~~~d~tiV~GVN~~~~~~~~~IISnAs----  153 (173)
T d1obfo1          78 ANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGGADVDATVVYGVNHGTLKSTDTVISNAD----  153 (173)
T ss_dssp             CCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCCTTSSEECCTTTSGGGCCTTCCEEECCC----
T ss_pred             ecCCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCCCCCcceEEEecchhhcCCCCCEEECCc----
Confidence            99999999999999999999999999999999999999999999999874  799999999999998889999986    


Q ss_pred             eecchhHHHhhhcceeEEEEEEEeeccC
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTTVHSITA  188 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~ittv~a~s~  188 (341)
                                ++|||+.++|||+|++|.
T Consensus       154 ----------~~fgI~~g~mtTih~~ts  171 (173)
T d1obfo1         154 ----------NEWGFSNRMLDTTVALMS  171 (173)
T ss_dssp             ----------TTHHHHHHHHHHHHHHHH
T ss_pred             ----------cccCceeeEEEeeheeee
Confidence                      899999999999999975

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=6.4e-37  Score=265.11  Aligned_cols=160  Identities=16%  Similarity=0.222  Sum_probs=126.3

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |+||||||||||||.++|++.++|++|+|+|||...+.....++..+++.|+.+. ......+. .+.++          
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~v~----------   68 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQ-SIKKFEES-GIPVA----------   68 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGG-GHHHHHTT-TCCCC----------
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCc-cceecccc-ceecC----------
Confidence            5899999999999999999999999999999998444444433444556666665 43333333 23222          


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC---CCeeeeccCcccc-CCC-CcEEeCCCCccc
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD---APMFVVGVNEKEY-KPE-LDIVSNASCTTN  160 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d---~~~~V~Gvn~~~~-~~~-~~iIsnp~C~tt  160 (341)
                        ..++|...++|+|+||||.|.+++.++.|+++|+ ++++|+|..+   +.+||||+|++++ .++ .++|||+|||||
T Consensus        69 --g~~~~~~~~vDiViecTG~f~~~e~a~~hl~~G~-KvIi~~~~~~~~~~~t~V~GvN~~~~~~~~~~~vVSnAscttn  145 (178)
T d1b7go1          69 --GTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQR-NAIFQGGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPE  145 (178)
T ss_dssp             --CCHHHHHHHCSEEEECCSTTHHHHHHHHHHHTTC-EEEECTTSCGGGSSCEECHHHHHHHHTTCSEEEECCTTTHHHH
T ss_pred             --CchhhhhhcCCEEEECCCCcCCHHHHHHHHHcCC-EEEEECCCCccccCCeEEeCcchHHhcCCCCCEEEeCCccccc
Confidence              2355666689999999999999999999999995 5778888653   4589999999885 333 479999999999


Q ss_pred             eecch------------hHHHhhhcceeEEEE
Q 019445          161 CLAPL------------AKVIHDKFGIVEGLM  180 (341)
Q Consensus       161 ~Lapl------------lk~L~~~fgi~~~~i  180 (341)
                      ||+|+            +|+|+|+|||++|+|
T Consensus       146 ~lap~~~~~~~~~~~~~~kv~~~~~gi~~g~~  177 (178)
T d1b7go1         146 NIDAIRASMKLMSAEDSMRITNESLGILKGYL  177 (178)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHTTCCCSBC
T ss_pred             ccHHHHHHHHhhccccceeeeccccceeeeee
Confidence            99999            999999999998875

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=100.00  E-value=1.1e-35  Score=255.92  Aligned_cols=160  Identities=14%  Similarity=0.142  Sum_probs=118.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc-cccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD-SVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d-s~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||||||||||.++|++.++|++++++||+.. ......++++++ +.++.+.......++. .+.+++.       
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~v~g~-------   71 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTR-PDFEARMALKKGYDLYVAIPERVKLFEKA-GIEVAGT-------   71 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESS-CSHHHHHHHHTTCCEEESSGGGHHHHHHT-TCCCCEE-------
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCC-cHHHHHHHHhcCCceEecccccceeeccc-CcccCCC-------
Confidence            47999999999999999999999999999999973 334445666665 3333332011111111 2222221       


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCC-CCcEEeCCCCccce
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTTNC  161 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~-~~~iIsnp~C~tt~  161 (341)
                           ..|-..++|+|+||||.|.+.+.++.|+++|+|+|+.+++..|  ..++|||+|++++.+ ++.+|||+||||||
T Consensus        72 -----~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~~~~~~~~~v~GvN~~~~~~~~~~ivS~aSCTTNc  146 (171)
T d1cf2o1          72 -----VDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDA  146 (171)
T ss_dssp             -----HHHHHHTCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCHHHHSCEECHHHHHHHHTTCSEEEECTHHHHHHH
T ss_pred             -----hhHhhcCCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCCccCCCceeEeccChhhhcCCCCcEEEECCchHHh
Confidence                 2232358999999999999999999999999876655555444  457999999888754 56799999999999


Q ss_pred             ecchhHHHhhhcceeEEE
Q 019445          162 LAPLAKVIHDKFGIVEGL  179 (341)
Q Consensus       162 Lapllk~L~~~fgi~~~~  179 (341)
                      |||++|+|+++||+..++
T Consensus       147 lapv~kvl~~~fGiv~~l  164 (171)
T d1cf2o1         147 VRAILEMEEDKYKSINKT  164 (171)
T ss_dssp             HHHHTTSCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCchhHH
Confidence            999999999999986544

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=1.4e-34  Score=249.27  Aligned_cols=162  Identities=16%  Similarity=0.139  Sum_probs=121.7

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccc--cccCcccCceeeecCCcceEECCEEEEEE
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYD--SVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~d--s~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |++||||||||||||.++|++.++|++|+|+|||. .+.....++++++  +.++.+. ......+. .+.         
T Consensus         1 M~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~-~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~---------   68 (172)
T d2czca2           1 MKVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKT-KPDFEAYRAKELGIPVYAASEE-FIPRFEKE-GFE---------   68 (172)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEES-SCSHHHHHHHHTTCCEEESSGG-GHHHHHHH-TCC---------
T ss_pred             CcEEEEEECCCHHHHHHHHHHHhCCCceEEEEecC-CChHHHHHhhhcCceeeccccc-ceeeeccc-Ccc---------
Confidence            36899999999999999999999999999999997 3334445666654  3222222 11000000 011         


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC--CCeeeeccCccccCC-CCcEEeCCCCcc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD--APMFVVGVNEKEYKP-ELDIVSNASCTT  159 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d--~~~~V~Gvn~~~~~~-~~~iIsnp~C~t  159 (341)
                         ....++|...++|+|+||||.|.+++.++.|+++|+|+|++|+|..|  ++++|||+|++++.. +...|++.||||
T Consensus        69 ---~~~~~~~~~~~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~~~~~~t~v~GvNh~~~~~~~~~~v~scsctT  145 (172)
T d2czca2          69 ---VAGTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENI  145 (172)
T ss_dssp             ---CSCBHHHHHTTCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGGGSSEEECHHHHGGGGTTCSEEEECTHHHHH
T ss_pred             ---ccchhhhhhccCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCcccCCCeeEecccchhhcCCCceEEEecCchH
Confidence               12234454468999999999999999999999999999999998775  589999999988753 233466667799


Q ss_pred             ceecchhHHHhhhcceeEEEEE
Q 019445          160 NCLAPLAKVIHDKFGIVEGLMT  181 (341)
Q Consensus       160 t~Lapllk~L~~~fgi~~~~it  181 (341)
                      |||+|++|+|+++|||+++.+|
T Consensus       146 n~lap~~kvld~~~gIe~~~~~  167 (172)
T d2czca2         146 DAIRAMFELADKWDSIKKTNKS  167 (172)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcCeeEeeeE
Confidence            9999999999999999986543

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=7.2e-26  Score=194.80  Aligned_cols=142  Identities=15%  Similarity=0.207  Sum_probs=108.6

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      |+||||+|+ ||+|+|++|+|.+||++||+.+.+.+..++.+      ++.++.+. .             ...   ..+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i------~~~~p~~~-~-------------~~~---~~~   57 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKL------EEIFPSTL-E-------------NSI---LSE   57 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBH------HHHCGGGC-C-------------CCB---CBC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcc------cccCchhh-c-------------ccc---ccc
Confidence            479999999 99999999999999999999998875555433      23333332 1             000   111


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC-CC-----------------CeeeeccC---cc
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DA-----------------PMFVVGVN---EK  143 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~-d~-----------------~~~V~Gvn---~~  143 (341)
                      .+++++   ..++|+||+|+|++.+++.+++.  +|+++||+|+++| +.                 -.++||++   ++
T Consensus        58 ~~~~~~---~~~~dvvf~a~p~~~s~~~~~~~--~~~~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~~~~YGlpE~~r~  132 (176)
T d1vkna1          58 FDPEKV---SKNCDVLFTALPAGASYDLVREL--KGVKIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHRE  132 (176)
T ss_dssp             CCHHHH---HHHCSEEEECCSTTHHHHHHTTC--CSCEEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHH
T ss_pred             cCHhHh---ccccceEEEccccHHHHHHHHhh--ccceEEecCccccccchhhHHHhhccccccccccceeecCcHHhHH
Confidence            133222   13789999999999999988763  7899999999987 11                 13789986   67


Q ss_pred             ccCCCCcEEeCCCCccceecchhHHHhhhccee
Q 019445          144 EYKPELDIVSNASCTTNCLAPLAKVIHDKFGIV  176 (341)
Q Consensus       144 ~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~  176 (341)
                      +++ ++++||||||++|++...|++|++.|||.
T Consensus       133 ~i~-~~~~IanPgC~~t~~~laL~PL~~~~gi~  164 (176)
T d1vkna1         133 EIK-NAQVVGNPGLVKGASGQAVQNMNIMFGLD  164 (176)
T ss_dssp             HHT-TCSEEECCCTTTTTHHHHHHHHHHHTTCC
T ss_pred             HHh-cCCEEEccCcHHHHHHHHHhhHHHhcCCc
Confidence            887 78999999999999888899999999873

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.90  E-value=7.5e-25  Score=184.86  Aligned_cols=144  Identities=16%  Similarity=0.195  Sum_probs=111.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcC--CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            7 IKIGINGF-GRIGRLVARVALQR--DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~--p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      .||||+|+ ||+|+||+|+|.+|  |.+++..+.+.+..++                          .+.......... 
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~--------------------------~~~~~~~~~~~~-   54 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK--------------------------SLKFKDQDITIE-   54 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTC--------------------------EEEETTEEEEEE-
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccc--------------------------cccccCCccccc-
Confidence            58999999 99999999999999  6678877766522221                          111222222222 


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC---CCCeeeeccCccccCCCCcEEeCCCCccc
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK---DAPMFVVGVNEKEYKPELDIVSNASCTTN  160 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~---d~~~~V~Gvn~~~~~~~~~iIsnp~C~tt  160 (341)
                        +..+.+  ..++|++|+|+|++.+.+++++.+++|+++||+|++++   +.|..+|++|++.++...++||||||+|+
T Consensus        55 --~~~~~~--~~~~d~~f~~~~~~~s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAnPgC~tt  130 (154)
T d2gz1a1          55 --ETTETA--FEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNAAWN  130 (154)
T ss_dssp             --ECCTTT--TTTCSEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCTHHH
T ss_pred             --ccchhh--hhhhhhhhhccCccchhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhcCcCceEECCCCHHH
Confidence              122223  34899999999999999999999999999999999997   37888999999888755689999999999


Q ss_pred             eecchhHHHhhhcceeEEEEEE
Q 019445          161 CLAPLAKVIHDKFGIVEGLMTT  182 (341)
Q Consensus       161 ~Lapllk~L~~~fgi~~~~itt  182 (341)
                      +|.+ ++||++++.|+....+|
T Consensus       131 ~i~~-l~PL~~~~lik~~~~~~  151 (154)
T d2gz1a1         131 SVQI-AETLHERGLVRPTAELK  151 (154)
T ss_dssp             HHHH-HHHHHHTTCCSCCSSCC
T ss_pred             HHHH-HHHHHHhcCCCccceee
Confidence            9877 68999998887654444

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=1.2e-24  Score=181.61  Aligned_cols=135  Identities=13%  Similarity=0.149  Sum_probs=106.6

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHH--cCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVARVAL--QRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~--~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +|||||+|+ ||+|+|++|+|.  +||.+||..+.+....++                          .+...+....+.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk--------------------------~i~~~~~~~~~~   55 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ--------------------------RMGFAESSLRVG   55 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC--------------------------EEEETTEEEECE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc--------------------------ceeeccccchhc
Confidence            579999999 999999999996  689999999987633332                          122222323222


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCC--CCCeeeeccCccccCC--CCcEEeCCCCc
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEKEYKP--ELDIVSNASCT  158 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~--d~~~~V~Gvn~~~~~~--~~~iIsnp~C~  158 (341)
                         +++..+|  .++|++|+|+|+..++++++++.++|++++|+|++++  +.+..++++|++.+..  +.++|||||||
T Consensus        56 ---~~~~~~~--~~~d~vf~a~p~~~s~~~~~~~~~~g~~VID~Ss~fR~~~~~~~vpevn~~~l~~~~~~~iIANPgC~  130 (144)
T d2hjsa1          56 ---DVDSFDF--SSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEPSVAPPVMVSVNAERLASQAAPFLLSSPAAL  130 (144)
T ss_dssp             ---EGGGCCG--GGCSEEEECSCHHHHHHHHHHHHHTTCEEEETTCTTTTTTSCBCCHHHHGGGGGGSCSSCEEECCCHH
T ss_pred             ---cchhhhh--ccceEEEecCCcchhhhhccccccCCceEEeechhhcccccccccccccHHHHHhccCCCEEccCcHH
Confidence               2333444  3899999999999999999999999999999999987  3666788999888753  57899999999


Q ss_pred             cceecchhHHHhh
Q 019445          159 TNCLAPLAKVIHD  171 (341)
Q Consensus       159 tt~Lapllk~L~~  171 (341)
                      |+++...|+++|+
T Consensus       131 t~~~ll~L~~~h~  143 (144)
T d2hjsa1         131 NAVLLGELLIKHY  143 (144)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhhcc
Confidence            9998888888875

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.89  E-value=6e-25  Score=190.63  Aligned_cols=146  Identities=14%  Similarity=0.154  Sum_probs=107.4

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +++||||+|+ ||+|+||+|+|.+||++||+.+.+.+..++...      ..++.+. .     .  .       ...+.
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~------~~~~~~~-~-----~--~-------~~~~~   62 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFG------SVFPHLI-T-----Q--D-------LPNLV   62 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHH------HHCGGGT-T-----S--C-------CCCCB
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccc------ccccccc-c-----c--c-------cccch
Confidence            5799999999 999999999999999999999988755554332      2222222 0     0  0       00011


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-------------------CCeeeeccC---
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-------------------APMFVVGVN---  141 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-------------------~~~~V~Gvn---  141 (341)
                        ...+..|  .++|+||+|+|++.+++.++.+.+. .++|+++++++.                   .+.++||++   
T Consensus        63 --~~~~~~~--~~~Dvvf~alp~~~s~~~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vyglpE~~  137 (183)
T d2cvoa1          63 --AVKDADF--SNVDAVFCCLPHGTTQEIIKGLPQE-LKIVDLSADFRLRDINEYAEWYGHSHRAPELQQEAVYGLTEVL  137 (183)
T ss_dssp             --CGGGCCG--GGCSEEEECCSSSHHHHHHHTSCSS-CEEEECSSTTTCSCHHHHHHHHSSCCSCHHHHTTCEECCHHHH
T ss_pred             --hhhhhhh--cccceeeeccccchHHHHHHHHHhc-CcccccchhhhccccchheeeccccccchhhhccccccCchHH
Confidence              1111223  4899999999999999999876554 567888877541                   246889986   


Q ss_pred             ccccCCCCcEEeCCCCccceecchhHHHhhhcceeE
Q 019445          142 EKEYKPELDIVSNASCTTNCLAPLAKVIHDKFGIVE  177 (341)
Q Consensus       142 ~~~~~~~~~iIsnp~C~tt~Lapllk~L~~~fgi~~  177 (341)
                      +++++ ++++|||||||||++...|+||+..+|+.+
T Consensus       138 r~~i~-~a~~IANPgC~~t~~~laL~PL~~~~gli~  172 (183)
T d2cvoa1         138 RNEIR-NARLVANPGLVKGASGQAVQNLNLMMGLPE  172 (183)
T ss_dssp             HHHHH-HCSEEECCCTTTTTHHHHHHHHHHHHTSCT
T ss_pred             HHHHh-hCCEeeCCCcHHHHHHHhhhhHHHhcCCCc
Confidence            67776 689999999999999999999988888754

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.89  E-value=1.6e-24  Score=187.26  Aligned_cols=138  Identities=14%  Similarity=0.156  Sum_probs=99.8

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCC---ChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFI---STDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~---~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      |+||||+|+ ||+|+||+|+|.+||+||+..+.+.+.   .++.      +...++.+. +..      .+     ....
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~------~~~~~~~~~-~~~------~~-----~~~~   62 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKL------ISDLHPQLK-GIV------DL-----PLQP   62 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCB------HHHHCGGGT-TTC------CC-----BEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccccccc------ccccccccc-ccc------cc-----cccc
Confidence            589999999 999999999999999999999975421   2222      223333332 100      00     1111


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCC-------------------CCeeeeccC-
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-------------------APMFVVGVN-  141 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d-------------------~~~~V~Gvn-  141 (341)
                      .     ++..+...++|+||+|+|++.+.+.++++.+.|++++|+|++++-                   ...+|||++ 
T Consensus        63 ~-----~~~~~~~~~~dvvf~alp~~~s~~~~~~~~~~~~~vIDlSadfRl~~~~~~~~~y~~~~~~~~~~~~~vYglpE  137 (179)
T d2g17a1          63 M-----SDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAE  137 (179)
T ss_dssp             E-----SCGGGTCTTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSTTSSSCHHHHHHHHCSCCSCHHHHHHCEECCGG
T ss_pred             c-----hhhhhhhcccceeeccccchhHHHHhhhhhhcCceeecccccccccccccccccccccccccccccccccCchh
Confidence            1     111122358999999999999999999999999999999999871                   135789986 


Q ss_pred             --ccccCCCCcEEeCCCCccceecchhH
Q 019445          142 --EKEYKPELDIVSNASCTTNCLAPLAK  167 (341)
Q Consensus       142 --~~~~~~~~~iIsnp~C~tt~Lapllk  167 (341)
                        +++++ ++++|||||||+|++...++
T Consensus       138 ~~r~~i~-~~~~IAnPGCyaTa~~laL~  164 (179)
T d2g17a1         138 WNVDKLN-TANLIAVPGLLKGAAAQAVQ  164 (179)
T ss_dssp             GCHHHHT-TCSEEECCCTTTTTHHHHHH
T ss_pred             hhHHHHh-cCCEEEcCCchHHHHHHHHH
Confidence              56777 68999999999999555444

>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=99.86  E-value=5.3e-23  Score=175.08  Aligned_cols=151  Identities=19%  Similarity=0.256  Sum_probs=111.8

Q ss_pred             CCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChh-HHHHHHhhhhcCcee
Q 019445          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA-KAVGKVLPALNGKLT  234 (341)
Q Consensus       156 ~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~-~~~~~~lpel~~~l~  234 (341)
                      ||+|++|+|+||+||++|||+++.++|+|++++.+           +.+|.++.|++|+.++.. +....+.+.|..+++
T Consensus         1 SCtT~~l~~~lkpL~~~fgI~~~~vtT~qa~s~~~-----------~~~~~~~~niip~~~~~~~~~~~e~~kil~~~i~   69 (165)
T d1cf2o2           1 SCNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPA-----------QVSKGPINAIIPNPPKLPSHHGPDVKTVLDINID   69 (165)
T ss_dssp             CHHHHHHHHHHHHHHHHHCEEEEEEEEEEESSCTT-----------CTTCCCSSCCEESSSSSSCTHHHHHHTTSCCCEE
T ss_pred             CChHHHHHHHHHHHHHHcCceEEEEEEEECCcCCc-----------cccccccccccCCCcHHHHHHHHHhhhhcCCcEE
Confidence            79999999999999999999999999999988643           346788999999987753 333345566667899


Q ss_pred             EEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhcCcccccccCCCcceeecccCCCcceeEEeCC--CcceecCCe
Q 019445          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESEGKLKGILGYTEEDVVSTDFVGDSRSSIFDAK--AGIALSKNF  312 (341)
Q Consensus       235 ~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~--~~~~~~~~~  312 (341)
                      ++|+|||+++||+.+++++++++++.+|++++|+++++-.   ++.        .+....+.+.+++..  .+ .+.+++
T Consensus        70 ~tavRVPv~~~H~~~v~v~~~~~~t~eev~~~l~~~~~v~---l~~--------~~~~~~~~~~~~~~~~dvG-R~R~Dl  137 (165)
T d1cf2o2          70 TMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFEDTPRVI---LIS--------AEDGLTSTAEIMEYAKELG-RSRNDL  137 (165)
T ss_dssp             EEEEEESCCSCEEEEEEEEESSCCCHHHHHHHHHHSTTEE---EEC--------TTTTCCSHHHHHHHHHHHT-CGGGCC
T ss_pred             EEEEecCccceEEEEEEEEECCcCCHHHHHHHHHHCCCCc---ccc--------CccCCCCCcchhhhcccCC-CccCcc
Confidence            9999999999999999999999999999999999976422   221        111111122222211  11 122446


Q ss_pred             EEEEEEeCCCcchhhhH
Q 019445          313 VKLVSWYDNEWGYSSRV  329 (341)
Q Consensus       313 ~k~~~wydne~gy~~r~  329 (341)
                      .++..|||+-|-+.+++
T Consensus       138 ~e~~vw~ds~~v~gd~l  154 (165)
T d1cf2o2         138 FEIPVWRESITVVDNEI  154 (165)
T ss_dssp             CSEEEEGGGCEEETTEE
T ss_pred             HhheeeccceEEECCEE
Confidence            78899999887666653

>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.83  E-value=7.6e-22  Score=167.29  Aligned_cols=105  Identities=16%  Similarity=0.229  Sum_probs=90.7

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccCChh--HHHHHHhhhhcCcee
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAA--KAVGKVLPALNGKLT  234 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~g~~--~~~~~~lpel~~~l~  234 (341)
                      |+|+||+|+||+||++|||+++.++|+|++|+.+.         .++++....+.+|...+..  +.+..++|+|  +++
T Consensus         1 CsT~~l~~~lkpL~~~fgi~rv~vtt~qa~s~~g~---------~~~~~~~~~~~~p~~~~~~~~~~v~~~~p~l--~i~   69 (162)
T d1b7go2           1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKE---------VKKGPINSLVPDPATVPSHHAKDVNSVIRNL--DIA   69 (162)
T ss_dssp             HHHHHHHHHHHHHHTTSCEEEEEEEEEEESSCTTC---------CSCCCSSCCEESSSSSSCTHHHHHHTTSTTC--EEE
T ss_pred             CcHHHHHHHHHHHHHHhCEEEEEEEEEeeccCCcc---------ccccccccccccccccccccceeeeccCCCc--eEE
Confidence            99999999999999999999999999999997643         3445555555566665653  5678899999  599


Q ss_pred             EEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          235 GMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       235 ~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                      ++|+|||+++||+.+++++++++++.+||+++|+++++
T Consensus        70 ~tavRVPv~~~h~~~~~~~~~~~~~~eev~~~l~~~~~  107 (162)
T d1b7go2          70 TMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPR  107 (162)
T ss_dssp             EEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTCTT
T ss_pred             EEEEEcCCCcceEEEEEEEECCcCCHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999998765

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=99.72  E-value=1.1e-19  Score=151.16  Aligned_cols=126  Identities=14%  Similarity=0.133  Sum_probs=89.9

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHc---CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF-GRIGRLVARVALQ---RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~---~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      |||||+|+ ||+|+|++|+|++   ||.+++..+.+....++..           .+.               ++...+.
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~-----------~~~---------------~~~~~~~   54 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP-----------NFG---------------KDAGMLH   54 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC-----------CSS---------------SCCCBCE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc-----------ccC---------------Ccceeee
Confidence            48999999 9999999998874   5678988887653332210           011               0111111


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc--EEEecCCCC---CCCeeeeccCccccCC-----CCcE-
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAPSK---DAPMFVVGVNEKEYKP-----ELDI-  151 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k--~V~lSa~~~---d~~~~V~Gvn~~~~~~-----~~~i-  151 (341)
                      ...+.  ..|  .++|+||+|+|++.+++++++++++|.+  +||+|++++   |.|..++++|++.++.     .... 
T Consensus        55 ~~~~~--~~~--~~~DvvF~alp~~~s~~~~~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~k~~~  130 (147)
T d1mb4a1          55 DAFDI--ESL--KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFV  130 (147)
T ss_dssp             ETTCH--HHH--TTCSEEEECSCHHHHHHHHHHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccch--hhh--ccccEEEEecCchHHHHHhHHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCCccee
Confidence            11121  222  4899999999999999999999999987  888999987   4889999999887652     1234 


Q ss_pred             --EeCCCCcccee
Q 019445          152 --VSNASCTTNCL  162 (341)
Q Consensus       152 --Isnp~C~tt~L  162 (341)
                        ++||+|+|-+|
T Consensus       131 ~~~~~p~~~~~~~  143 (147)
T d1mb4a1         131 GGAAEPLRRTLRI  143 (147)
T ss_dssp             ECTHHHHHHHHHH
T ss_pred             eeccCcCHhHhHH
Confidence              49999998774

>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.69  E-value=1.5e-17  Score=143.38  Aligned_cols=116  Identities=9%  Similarity=0.200  Sum_probs=97.0

Q ss_pred             Cccce-ecchhHHHhhhcceeEEEEEEEeeccCcce------------eeeCCCCCCcccccccccccccccC-----Ch
Q 019445          157 CTTNC-LAPLAKVIHDKFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSST-----GA  218 (341)
Q Consensus       157 C~tt~-Lapllk~L~~~fgi~~~~ittv~a~s~~~~------------~~d~~s~~~~~~gr~~~~niiP~~~-----g~  218 (341)
                      |++.+ |+++|++||+.|+|++..++|+||+||.++            ++++...+..-+++.+++|+||+..     |.
T Consensus         1 Cs~~~qL~~aL~PL~~~~~i~rv~vsTyQavSGaG~~gv~eL~~Qt~~ll~~~~~~~~~fp~~iafNviP~ig~~~~~g~   80 (190)
T d2hjsa2           1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGH   80 (190)
T ss_dssp             CHHHHHHHHHHHHHTTTCCEEEEEEEEEECGGGGCHHHHHHHHHHHHHHHTTCCCCCSSSSSCCTTCCBSSSSCBCTTSC
T ss_pred             ChhHHHHHHHHHHHHHhhCceEEEEEEEechhhcCHHHHHHHHHHHHHHhccccccccccchhhcccccccccccccccc
Confidence            88865 999999999999999999999999999753            3455544456678999999999883     55


Q ss_pred             hHHHHHHhhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          219 AKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       219 ~~~~~~~lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                      .+|+.|+.-|.++       .++.+|+|||+++||...++++++++++.++++++|+++..
T Consensus        81 t~EE~K~~~Et~KIL~~~~l~vs~TcvRVPV~~gHs~sv~ve~~~~i~~~e~~~~l~~~~g  141 (190)
T d2hjsa2          81 SAIERRIFAEVQALLGERIGPLNVTCIQAPVFFGDSLSVTLQCAEPVDLAAVTRVLDATKG  141 (190)
T ss_dssp             BHHHHHHHHHHHHHTGGGBCCEEEEEEECSCSSCEEEEEEEEESSCCCHHHHHHHHHHSTT
T ss_pred             chhhhhhhhhhhhhccCccccceeeeEEeehhhcchhheeeeeecCccHHHHHHHHHhCCC
Confidence            6666666555442       47899999999999999999999999999999999998754

>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=99.69  E-value=7.5e-18  Score=148.73  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=95.2

Q ss_pred             CCccceecchhHHHhhhcceeEEEEEEEeeccCccee-------------------------------------eeCCCC
Q 019445          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-------------------------------------VDGPSM  198 (341)
Q Consensus       156 ~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~-------------------------------------~d~~s~  198 (341)
                      +|+|..|++.|++||++|||++..++||||+||++.-                                     +.+...
T Consensus         1 NCsT~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~gv~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (222)
T d1mb4a2           1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANPASSILDIDKKVAETMRSGSF   80 (222)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHSTTS
T ss_pred             CcHHHHHHHHHHHHHHHhCeeEEEEeehhhhhhhcHHHHHHHHHHHHhhhccchhhhcCcchhhccchhhhhhhcccCCC
Confidence            6999999999999999999999999999999997520                                     111111


Q ss_pred             CCccccccccccccccc-----CChhHHHHHHhhhhcC---------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHH
Q 019445          199 KDWRGGRAASFNIIPSS-----TGAAKAVGKVLPALNG---------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIK  264 (341)
Q Consensus       199 ~~~~~gr~~~~niiP~~-----~g~~~~~~~~lpel~~---------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~  264 (341)
                      ....+++.+++|+||+.     .|.++|+.|+.-|.++         ++++||+|||+++||...++++++++++.+|++
T Consensus        81 ~~~~f~~~iAfNviP~i~~~~~~G~t~EE~K~~~EtrKIL~~~d~~i~VsaTCVRVPV~~gHsesV~ve~~~~is~~e~~  160 (222)
T d1mb4a2          81 PTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKILGLQDSPVPIDGTCVRIGAMRCHSQALTIKLKQNIPLDEIE  160 (222)
T ss_dssp             SCTTTSSCCTBSEESCCSCBCSSSCBHHHHHHHHHHHHHHTCTTSCCCEECCCCEESBSSEEEEEEEEEESSCCCHHHHH
T ss_pred             ccccccccchhcccccccccccCCcccchHHHHHHHHHHhcCCCcccchhHHHHhhhhhhheeeeEEEEeeecccHHHHH
Confidence            23457889999999988     3666776666555332         368899999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 019445          265 NAIKEESE  272 (341)
Q Consensus       265 ~~~~~a~~  272 (341)
                      ++|+++..
T Consensus       161 ~~L~~~~~  168 (222)
T d1mb4a2         161 EMIATHND  168 (222)
T ss_dssp             HHHHTSCS
T ss_pred             HHHhcccc
Confidence            99988653

>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.8e-17  Score=146.22  Aligned_cols=116  Identities=14%  Similarity=0.144  Sum_probs=93.8

Q ss_pred             CCccceecchhHHHhhhcceeEEEEEEEeeccCccee-e--------------------------e----------CCCC
Q 019445          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT-V--------------------------D----------GPSM  198 (341)
Q Consensus       156 ~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~-~--------------------------d----------~~s~  198 (341)
                      +|+|..|+..||+||++|||++..++||||+||++.- +                          |          +...
T Consensus         1 NCst~~l~~aL~pL~~~~~i~rv~vsTYQAvSGaG~~~v~EL~~Q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (221)
T d1t4ba2           1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGEL   80 (221)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEEEEEEEEBCGGGTCHHHHHHHHHHHHHHHHHTHHHHTCTTCCHHHHHHHHHHHHHHTCS
T ss_pred             CcHHHHHHHHHHHHHHHhCceEEEEEhhhhhhhhcHHHHHHHHHHHHhhhccccccccCchhhccchhhhhhhhcccccC
Confidence            6999999999999999999999999999999997520 0                          0          0111


Q ss_pred             CCcccccccccccccccC-----ChhHHHHHHhhhhcC--------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHH
Q 019445          199 KDWRGGRAASFNIIPSST-----GAAKAVGKVLPALNG--------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKN  265 (341)
Q Consensus       199 ~~~~~gr~~~~niiP~~~-----g~~~~~~~~lpel~~--------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~  265 (341)
                      ....+++.+++|+||+..     |.++|+.|+.-|.++        ++++||+|||+++||...++++++++++.+|+++
T Consensus        81 ~~~~f~~~iAfNvIP~ig~~~e~G~t~EE~K~~~EtrKIL~~~~~i~VsaTcVRVPV~~gHsesv~ve~~~~i~~~ev~~  160 (221)
T d1t4ba2          81 PVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQAFTIKLKKDVSIPTVEE  160 (221)
T ss_dssp             CCTTTSSCCTTCEESCCSCBCTTSCBHHHHHHHHHHHHHHTCSSCCCEEEECCEESCSSEEEEEEEEEESSCCCHHHHHH
T ss_pred             CccccccccccccccCCccccccceechhHHHHHHHHhhhccccccceeeEEeeeehhccchheeeeehhhccchHHHHH
Confidence            234578899999999883     556666555544332        3789999999999999999999999999999999


Q ss_pred             HHHHhh
Q 019445          266 AIKEES  271 (341)
Q Consensus       266 ~~~~a~  271 (341)
                      ++.++.
T Consensus       161 ~L~~~~  166 (221)
T d1t4ba2         161 LLAAHN  166 (221)
T ss_dssp             HHHHHC
T ss_pred             HHhhcc
Confidence            998864

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=99.67  E-value=8.5e-18  Score=141.45  Aligned_cols=144  Identities=17%  Similarity=0.153  Sum_probs=96.0

Q ss_pred             CCCCCceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEE
Q 019445            1 MAGDKKIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV   79 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i   79 (341)
                      |.+  ++||||+|+|.+|++ ++++|.++|.+||+++.+++.......+    ...+|..            ...++  +
T Consensus         1 M~k--kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~----a~~~~i~------------~~~~~--~   60 (157)
T d1nvmb1           1 MNQ--KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLAR----AQRMGVT------------TTYAG--V   60 (157)
T ss_dssp             CCS--CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHH----HHHTTCC------------EESSH--H
T ss_pred             CCC--CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhh----hhhcCCc------------ccccc--e
Confidence            544  689999999999996 5688888999999999986433221111    0111100            00000  0


Q ss_pred             EEEecCCCCCCCccCCCccEEEecCCCccCHH--HHHHHHhCCCcEEEecCCCCCCCeeeeccCccccCC--CCcEEeCC
Q 019445           80 AVFGFRNPEEIPWAKTGAEYVVESTGVFTDKD--KAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP--ELDIVSNA  155 (341)
Q Consensus        80 ~v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~--~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~~--~~~iIsnp  155 (341)
                      .-+    .+..+  ..++|+||+|||++.+.+  ++.+++++|+.++|.|. ..+.|++|+++|.+++..  +.++|+||
T Consensus        61 d~l----~~~~~--~~~iDiVf~ATpag~h~~~~~~~~aa~~G~~VID~s~-a~~vplvVPevN~~~~~~~~n~nlitc~  133 (157)
T d1nvmb1          61 EGL----IKLPE--FADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTP-AAIGPYCVPVVNLEEHLGKLNVNMVTYA  133 (157)
T ss_dssp             HHH----HHSGG--GGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECST-TCSSCBCCHHHHTTTTTTCSEEECCCTC
T ss_pred             eee----eeccc--ccccCEEEEcCCchhHHHhHHHHHHHHcCCEEEEccc-cccceEEccCcCHHHHhcCCCCCeEecC
Confidence            000    01112  247999999999876654  66777899997777774 356999999999877763  24799999


Q ss_pred             CCccceecchhHHHhh
Q 019445          156 SCTTNCLAPLAKVIHD  171 (341)
Q Consensus       156 ~C~tt~Lapllk~L~~  171 (341)
                      ||+|..++-.++++++
T Consensus       134 ~~~tip~~~al~~~~~  149 (157)
T d1nvmb1         134 GNLDIMTSAALATAER  149 (157)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHH
Confidence            9988776666666665

>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.58  E-value=5.8e-16  Score=135.06  Aligned_cols=116  Identities=15%  Similarity=0.222  Sum_probs=92.8

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCccee------------eeCC-----------CCCCccccccccccccc
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKT------------VDGP-----------SMKDWRGGRAASFNIIP  213 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~------------~d~~-----------s~~~~~~gr~~~~niiP  213 (341)
                      |+|+.|+..|++||++|||++..++|+||+||++.-            +++.           +-.....++.+++|++|
T Consensus         1 Cst~~l~~aL~pL~~~~gi~~v~vsTyQAvSGaG~~gv~eL~~q~~~~l~~~~~~~~~~~~~~p~~~~~~~~~iafN~iP   80 (202)
T d2gz1a2           1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALP   80 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEEEBCGGGGCHHHHHHHHHHHHHHHHHCCCGGGCCCSSSSCTTSSCCCCCTTCCBC
T ss_pred             CcHHHHHHHHHHHHHhcCceEEEEEehHhHHhhhHHHHHHHHHHHHHHhcccccccccchhcccccccccceehhhhhhh
Confidence            999999999999999999999999999999997531            1100           00122355789999999


Q ss_pred             cc-----CChhHHHHHHhhhhcC-------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          214 SS-----TGAAKAVGKVLPALNG-------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       214 ~~-----~g~~~~~~~~lpel~~-------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                      +.     .|..+++.|+.-|.++       .++++|+|||+++||...++++++++++.+++++++.++..
T Consensus        81 ~i~~~~~~g~t~EE~k~~~E~~kIl~~~~~~vsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~g  151 (202)
T d2gz1a2          81 QIDVFTDNDYTYEEMKMTKETKKIMEDDSIAVSATCVRIPVLSAHSESVYIETKEVAPIEEVKAAIAAFPG  151 (202)
T ss_dssp             CCSCBCTTSSBHHHHHHHHHHHHHTTCTTSEEEEECCBCSCSSCEEEEEEEECSSCCCHHHHHHHHHTSTT
T ss_pred             cccchhcccchhhhhHHhhhhcceecccccCcccceEEEEEeecceEEEEEeeehhccHHHHHHHHhcCCC
Confidence            87     3556666666555432       47889999999999999999999999999999999998764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.5e-16  Score=130.61  Aligned_cols=110  Identities=12%  Similarity=0.152  Sum_probs=77.5

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcC---CCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF-GRIGRLVARVALQR---DDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~---p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      +||||+|+ |++|++++++|++|   |..+++++.+....++..           .+.               +..+.+.
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~-----------~~~---------------~~~~~~~   55 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAP-----------SFG---------------GTTGTLQ   55 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCC-----------GGG---------------TCCCBCE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccc-----------ccc---------------CCceeee
Confidence            59999999 99999999877665   567888776652222210           111               0001111


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCc--EEEecCCCC---CCCeeeeccCccccC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAK--KVVISAPSK---DAPMFVVGVNEKEYK  146 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k--~V~lSa~~~---d~~~~V~Gvn~~~~~  146 (341)
                      .  ..+..+|  .++|+||+|+|+..++++++++.++|++  +++.|++++   |+|+++|+||++.++
T Consensus        56 ~--~~~~~~~--~~~DivF~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~  120 (146)
T d1t4ba1          56 D--AFDLEAL--KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT  120 (146)
T ss_dssp             E--TTCHHHH--HTCSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH
T ss_pred             c--ccchhhh--hcCcEEEEecCchHHHHhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHH
Confidence            1  1121223  3899999999999999999999999987  666777766   589999999987774

>d2g17a2 d.81.1.1 (A:154-308) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.54  E-value=4.5e-15  Score=123.91  Aligned_cols=143  Identities=14%  Similarity=0.065  Sum_probs=92.9

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccc-------ccccccccCChhHHHHHHhhhh
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAA-------SFNIIPSSTGAAKAVGKVLPAL  229 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~-------~~niiP~~~g~~~~~~~~lpel  229 (341)
                      ||+|+....|.||-++--|+..          ...++|++|| .+++||+.       ..|+.||..+.    |||+||+
T Consensus         1 CyaTa~~l~L~PL~~~gli~~~----------~~i~i~a~SG-~SGaG~~~~~~~~~~~~~~~~Y~~~~----HrH~pEI   65 (155)
T d2g17a2           1 CYPTAAQLSLKPLIDGGLLDLT----------QWPVINATSG-VSGAGRKAAISNSFCEVSLQPYGVFT----HRHQPEI   65 (155)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCTT----------SCCEEEEEEC-GGGGCSCCCSTTSGGGCSEEECSTTT----CTHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCCCCC----------CceEEEeeec-cccccccchhhhccccceeeeccccc----cccHHHH
Confidence            8999944444554333122211          1123344443 44444432       34677888763    8899998


Q ss_pred             cC----ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCCCcceeEEeCCC
Q 019445          230 NG----KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVGDSRSSIFDAKA  304 (341)
Q Consensus       230 ~~----~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~~~~s~~~d~~~  304 (341)
                      ++    ++.++++.+|++||++++++++++++++.+|++++|+++|+ +||++|+.-. -|- .-+.+|.- .|.+  . 
T Consensus        66 ~q~l~~~i~F~Phl~p~~RGIl~Ti~~~l~~~~s~~~i~~~~~~~Y~~e~FV~v~~~~-~p~-~~~v~gtN-~~~i--~-  139 (155)
T d2g17a2          66 AVHLGAEVIFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQKAYGDKPLVRLYDKG-VPA-LKNVVGLP-FCDI--G-  139 (155)
T ss_dssp             HHHHTSCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSSS-CCC-GGGTTTSC-CEEE--E-
T ss_pred             HHHhCcCceeeecccccccccccccccccchhhhhHHHHHHHHHHHhhhhheEECCCC-CCc-HhhcCCCC-cEEE--E-
Confidence            76    46899999999999999999999999999999999999998 6999987421 121 12223332 3322  1 


Q ss_pred             cceecCCeEEEEEEeCC
Q 019445          305 GIALSKNFVKLVSWYDN  321 (341)
Q Consensus       305 ~~~~~~~~~k~~~wydn  321 (341)
                       ...+++.+-+++=.||
T Consensus       140 -~~~~~~~lvi~saiDN  155 (155)
T d2g17a2         140 -FAVQGEHLIVVATEDN  155 (155)
T ss_dssp             -EEEETTEEEEEEEECT
T ss_pred             -EEEeCCEEEEEEEccC
Confidence             2235566778888887

>d2cvoa2 d.81.1.1 (A:219-383) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.48  E-value=2.4e-14  Score=120.80  Aligned_cols=145  Identities=13%  Similarity=0.079  Sum_probs=95.5

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccc---------ccccccccCChhHHHHHHhh
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAA---------SFNIIPSSTGAAKAVGKVLP  227 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~---------~~niiP~~~g~~~~~~~~lp  227 (341)
                      ||+|+....|.||-++--|..           ++.++|+.|| .+++||++         ..|+.||..+.    |||+|
T Consensus         1 CyaT~~il~l~PL~~~gli~~-----------~~i~i~a~SG-~SGaGk~~~~~~~~~~~~~n~~~Y~~~~----HrH~p   64 (165)
T d2cvoa2           1 CYPTSIQLPLVPLIKAKLIKV-----------SNIIIDAKSG-VSGAGRGAKEANLYTEIAEGIHAYGIKG----HRHVP   64 (165)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCS-----------SSCEEEEEEE-GGGGCSCCCGGGBHHHHTTCCEECSCSC----CTHHH
T ss_pred             CchHHHHHHHHHHHHcCCCCC-----------CCeEEEEecc-ccccccccchhhhhhhhhhceeccchhc----cccCc
Confidence            899994444444443311211           2334455554 55666664         34677777653    77788


Q ss_pred             hhcC----------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCCCcc
Q 019445          228 ALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVGDSR  296 (341)
Q Consensus       228 el~~----------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~~~~  296 (341)
                      |+++          ++.++++.+|+.||++++++++++++++.++++++|+++|+ +||++|+...+-|-. .+.+|.-+
T Consensus        65 Ei~q~l~~~~~~~~~~~F~P~l~p~~RGil~ti~~~~~~~~~~~~i~~~~~~~Y~~~~FV~V~~~~~~p~~-~~v~gTN~  143 (165)
T d2cvoa2          65 EIEQGLSEAAESKVTISFTPNLICMKRGMQSTMFVEMAPGVTANDLYQHLKSTYEGEEFVKLLNGSSVPHT-RHVVGSNY  143 (165)
T ss_dssp             HHHHHHHHHHTSCCCCEEEEEEESSSSCEEEEEEEEBCTTCCHHHHHHHHHHHHTTCTTEEECSTTCCCCG-GGTTTSSC
T ss_pred             HHHHHhhhccCCCccEEEEeeeccccceeEEecccccccccchHHHHHHHHHHhhhcceEEEecCCCCCCh-hHccCCCc
Confidence            8765          34789999999999999999999999999999999999999 699999875544432 23444332


Q ss_pred             eeEEeCCCcceecCCeEEEEEEeCC
Q 019445          297 SSIFDAKAGIALSKNFVKLVSWYDN  321 (341)
Q Consensus       297 s~~~d~~~~~~~~~~~~k~~~wydn  321 (341)
                       |-+-..  .--.++.+-+++=+||
T Consensus       144 -~~I~v~--~~~~~~~~vi~s~iDN  165 (165)
T d2cvoa2         144 -CFMNVF--EDRIPGRAIIISVIDN  165 (165)
T ss_dssp             -EEEEEE--ECSSTTEEEEEEEECT
T ss_pred             -EEEEEE--EeCCCCEEEEEEEecC
Confidence             211110  0012356778888888

>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=7e-14  Score=117.35  Aligned_cols=102  Identities=23%  Similarity=0.273  Sum_probs=83.9

Q ss_pred             CCccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCcccccccccccccccC--ChhHHHHHHhhhhcCce
Q 019445          156 SCTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSST--GAAKAVGKVLPALNGKL  233 (341)
Q Consensus       156 ~C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~~~niiP~~~--g~~~~~~~~lpel~~~l  233 (341)
                      ||+|++|+++|++|++.||+.+..+..-   .+     |     .....|.+..|++|+..  |...+..+.+|+++  +
T Consensus         1 SC~T~~l~~~L~pL~~~~~~~rvv~vr~---a~-----d-----p~~~~~~i~~nviP~~~~~~~~~~d~~~v~~i~--v   65 (162)
T d2czca1           1 SCNTTGLVRTLSAIREYADYVYAVMIRR---AA-----D-----PNDTKRGPINAIKPTVEVPSHHGPDVQTVIPIN--I   65 (162)
T ss_dssp             CHHHHHHHHHHHHHGGGEEEEEEEEEEE---SS-----C-----TTCCSCCCSSCCEECCSSSCTHHHHHTTTSCCC--E
T ss_pred             CChHHHHHHHHHHHHHHhCceEEEEECc---cc-----C-----cccccCCcccccccCCCCCCccchhhcccCCeE--E
Confidence            7999999999999999999988765421   11     2     12234678899999863  55666677778775  9


Q ss_pred             eEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc
Q 019445          234 TGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE  272 (341)
Q Consensus       234 ~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~  272 (341)
                      +.+|+|||+++||...++++++++++.+|++++|+++++
T Consensus        66 ~~t~vRVPv~~gH~~~v~ve~~~~~~~~ev~~~l~~~pg  104 (162)
T d2czca1          66 ETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTR  104 (162)
T ss_dssp             EEEEEEESCSSCEEEEEEEEESSCCCHHHHHHHHHTSTT
T ss_pred             EEEEEEeeeeeeeEEEEEEEECCCCCHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999998764

>d1vkna2 d.81.1.1 (A:145-307) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: GAPDH-like
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=3.6e-14  Score=119.46  Aligned_cols=143  Identities=16%  Similarity=0.122  Sum_probs=91.5

Q ss_pred             CccceecchhHHHhhhcceeEEEEEEEeeccCcceeeeCCCCCCccccccc---------ccccccccCChhHHHHHHhh
Q 019445          157 CTTNCLAPLAKVIHDKFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAA---------SFNIIPSSTGAAKAVGKVLP  227 (341)
Q Consensus       157 C~tt~Lapllk~L~~~fgi~~~~ittv~a~s~~~~~~d~~s~~~~~~gr~~---------~~niiP~~~g~~~~~~~~lp  227 (341)
                      ||+|+....|.||-++--|+...+ ++          |++|| .+++||++         ..|+.||..+.    |||+|
T Consensus         1 CyaT~~~l~l~PLv~~gli~~~~i-~i----------~a~SG-~SGaGk~~~~~~~~~~~~~~~~~Y~~~~----HrH~p   64 (163)
T d1vkna2           1 CYPTSVILALAPALKHNLVDPETI-LV----------DAKSG-VSGAGRKEKVDYLFSEVNESLRPYNVAK----HRHVP   64 (163)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCCSEE-EE----------EEEEE-GGGGCSCCSGGGBHHHHTTCCEECSCSC----CTHHH
T ss_pred             CchHHHHHHHHHHHHcCCCCCCce-EE----------Eeecc-cccccccccccccccccccccccchhhh----ccccH
Confidence            899994444555544423332222 23          44443 44455553         44677887653    88888


Q ss_pred             hhcC----------ceeEEEEEeeeeeEeeEEEEEEeCCCCCHHHHHHHHHHhhc-CcccccccCCCcceeecccCCCcc
Q 019445          228 ALNG----------KLTGMSFRVPTVDVSVVDLTVRLEKEATYEEIKNAIKEESE-GKLKGILGYTEEDVVSTDFVGDSR  296 (341)
Q Consensus       228 el~~----------~l~~~~~rVP~~~g~~~~l~v~l~~~~~~~ei~~~~~~a~~-~~~~~il~~~~~~~vs~d~~~~~~  296 (341)
                      |+++          ++.++++.+|++||++++++++++  .+.++++++|+++|+ +||++|+...+-|-. -+.+|.-+
T Consensus        65 Ei~q~l~~~~~~~~~~~F~Phl~p~~RGil~ti~~~~~--~s~~~i~~~~~~~Y~~~~fV~V~~~~~~p~~-~~V~gTN~  141 (163)
T d1vkna2          65 EMEQELGKISGKKVNVVFTPHLVPMTRGILSTIYVKTD--KSLEEIHEAYLEFYKNEPFVHVLPMGIYPST-KWCYGSNH  141 (163)
T ss_dssp             HHHHHHHHHHTSCCEEEEEEEEESSSSCEEEEEEEECS--SCHHHHHHHHHHHHTTCTTEEECCTTCCCCG-GGGTTSSC
T ss_pred             HHHHHHHhhcCCcccEEEEEeeccccceeeeeeeeccc--ccchHHHHHHHHHHhhcCcEEEccccCCCCH-hHccCCCc
Confidence            8875          367899999999999999999875  478999999999999 699999865433321 22344322


Q ss_pred             eeEEeCCCcceecCCeEEEEEEeCC
Q 019445          297 SSIFDAKAGIALSKNFVKLVSWYDN  321 (341)
Q Consensus       297 s~~~d~~~~~~~~~~~~k~~~wydn  321 (341)
                       |-+..  ..--+++.+-+++=.||
T Consensus       142 -~~I~v--~~~~~~~~~vi~saiDN  163 (163)
T d1vkna2         142 -VFIGM--QMEERTNTLILMSAIDN  163 (163)
T ss_dssp             -EEEEE--EEETTTTEEEEEEEECT
T ss_pred             -EEEEE--EEcCCCCEEEEEEEecC
Confidence             21110  00013456778888887

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.90  E-value=1.9e-09  Score=90.49  Aligned_cols=86  Identities=21%  Similarity=0.288  Sum_probs=63.4

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      |.++||||+|+|++|+.+++.+.++|++|+++|.++.....         ..   .           .       .....
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~---------~~---~-----------~-------~~~~~   50 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD---------TK---T-----------P-------VFDVA   50 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS---------SS---S-----------C-------EEEGG
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc---------cc---c-----------c-------cccch
Confidence            35689999999999999999999999999999998722110         00   0           0       00111


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEE
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV  124 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V  124 (341)
                        +.+..   ..++|+|+.|||+....+.+.+++++|..+|
T Consensus        51 --~~~~~---~~~~D~Vvi~tp~~~h~~~a~~aL~aG~~vv   86 (170)
T d1f06a1          51 --DVDKH---ADDVDVLFLCMGSATDIPEQAPKFAQFACTV   86 (170)
T ss_dssp             --GGGGT---TTTCSEEEECSCTTTHHHHHHHHHTTTSEEE
T ss_pred             --hhhhh---ccccceEEEeCCCcccHHHHHHHHHCCCcEE
Confidence              11111   2479999999999999999999999998544

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=5.1e-08  Score=81.10  Aligned_cols=98  Identities=22%  Similarity=0.267  Sum_probs=66.7

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ++||+|+|+ ||+|+++++++.+.++++|++..++... ...    ..|  .|.+. +.    .       ...+.+.. 
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~-~~~----g~d--~~~~~-~~----~-------~~~~~~~~-   63 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS-SLL----GSD--AGELA-GA----G-------KTGVTVQS-   63 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC-TTC----SCC--TTCSS-SS----S-------CCSCCEES-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccc-hhc----cch--hhhhh-cc----c-------cCCceeec-
Confidence            589999999 9999999999999999999988775211 110    001  11111 00    0       01122222 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                       +++.+   ...+||++|.|....+.+.++.+.+.|.+.|+-|
T Consensus        64 -~~~~~---~~~~DViIDFs~p~~~~~~~~~a~~~~~~~ViGT  102 (162)
T d1diha1          64 -SLDAV---KDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGT  102 (162)
T ss_dssp             -CSTTT---TTSCSEEEECSCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             -cHHHH---hcccceEEEeccHHHHHHHHHHHHhccceeEEec
Confidence             34433   3578999999999999999999999998777654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.34  E-value=2e-07  Score=78.49  Aligned_cols=98  Identities=14%  Similarity=0.207  Sum_probs=65.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      ++||||+|+|++|+..++.+...|+++|++|.|..  .+....+   ...++...        .         ..++.  
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~--~~~~~~~---~~~~~~~~--------~---------~~~~~--   56 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRS--LEKAKAF---ATANNYPE--------S---------TKIHG--   56 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS--HHHHHHH---HHHTTCCT--------T---------CEEES--
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCC--ccccccc---hhcccccc--------c---------eeecC--
Confidence            48999999999999999999999999999999872  2211111   11111100        0         11121  


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.+++ .+..++|+|+.|||.....+.+..++++|.. |.+--|
T Consensus        57 ~~~~l-l~~~~iD~v~I~tp~~~h~~~~~~~l~~g~~-v~~EKP   98 (184)
T d1ydwa1          57 SYESL-LEDPEIDALYVPLPTSLHVEWAIKAAEKGKH-ILLEKP   98 (184)
T ss_dssp             SHHHH-HHCTTCCEEEECCCGGGHHHHHHHHHTTTCE-EEECSS
T ss_pred             cHHHh-hhccccceeeecccchhhcchhhhhhhccce-eecccc
Confidence            22221 0124789999999999999999999999964 555443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.30  E-value=5.5e-07  Score=75.63  Aligned_cols=97  Identities=23%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             CCceeEEEEccCHHHHH-HHHHHHcCCC-cEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEE
Q 019445            4 DKKIKIGINGFGRIGRL-VARVALQRDD-VELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAV   81 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~-llr~l~~~p~-~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v   81 (341)
                      |.++||||+|+|++|+. .++++.+.++ ++|++|.|+.  .+....   +...++.                    ..+
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~--~~~~~~---~~~~~~~--------------------~~~   55 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT--RSHAEE---FAKMVGN--------------------PAV   55 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS--HHHHHH---HHHHHSS--------------------CEE
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEecc--Hhhhhh---hhccccc--------------------cce
Confidence            35789999999999987 5888888765 7999999872  221111   0111110                    011


Q ss_pred             EecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           82 FGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        82 ~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      +.  +.+++ .+..++|+|+.|||.....+.+..++++|. .|.+--|
T Consensus        56 ~~--~~~el-l~~~~id~v~I~tp~~~h~~~~~~al~~gk-~V~~EKP   99 (181)
T d1zh8a1          56 FD--SYEEL-LESGLVDAVDLTLPVELNLPFIEKALRKGV-HVICEKP   99 (181)
T ss_dssp             ES--CHHHH-HHSSCCSEEEECCCGGGHHHHHHHHHHTTC-EEEEESS
T ss_pred             ee--eeecc-ccccccceeeccccccccccccccccccch-hhhcCCC
Confidence            11  22221 113478999999999999999999999995 4555433

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.23  E-value=7e-07  Score=77.56  Aligned_cols=101  Identities=13%  Similarity=0.122  Sum_probs=65.8

Q ss_pred             CCCCceeEEEEccCHHHH-HHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            2 AGDKKIKIGINGFGRIGR-LVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         2 ~~~~~irV~I~G~G~iG~-~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      .+..++||||+|+|.+|+ .+++.+..++.++|++|.|+  +.+.....   -..++- +               ...+.
T Consensus        29 ~~~~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~--~~~~a~~~---~~~~~i-~---------------~~~~~   87 (221)
T d1h6da1          29 PEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSG--NAEKAKIV---AAEYGV-D---------------PRKIY   87 (221)
T ss_dssp             CCCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECS--CHHHHHHH---HHHTTC-C---------------GGGEE
T ss_pred             CCCCCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecC--CHHHHHHH---HHhhcc-c---------------ccccc
Confidence            344579999999999997 47788888999999999987  33221111   111110 0               00111


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .+.  |.+++ .+..++|+|+.|||+....+.+.+++++|. .|.+-
T Consensus        88 ~~~--d~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~~gk-~v~~E  130 (221)
T d1h6da1          88 DYS--NFDKI-AKDPKIDAVYIILPNSLHAEFAIRAFKAGK-HVMCE  130 (221)
T ss_dssp             CSS--SGGGG-GGCTTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEC
T ss_pred             ccC--chhhh-cccccceeeeeccchhhhhhHHHHhhhcch-hhhcC
Confidence            111  22222 123478999999999999999999999996 44443

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=1.2e-06  Score=72.25  Aligned_cols=91  Identities=18%  Similarity=0.213  Sum_probs=63.5

Q ss_pred             ceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCCh-hhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFIST-DYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         6 ~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~-~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      ++||||+|+|.+|+. .++++..+|++++++|.|+..+. +..+.      .++.                     ..+.
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~------~~~~---------------------~~~~   53 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICE------SWRI---------------------PYAD   53 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHH------HHTC---------------------CBCS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhh------cccc---------------------cccc
Confidence            579999999999986 68899999999999999874332 22111      1100                     0010


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                        +.+++   ..++|+|+.|||+....+.+..++++|. .|.+--|
T Consensus        54 --~~~~l---~~~~D~V~I~tp~~~h~~~~~~al~~gk-~V~~EKP   93 (164)
T d1tlta1          54 --SLSSL---AASCDAVFVHSSTASHFDVVSTLLNAGV-HVCVDKP   93 (164)
T ss_dssp             --SHHHH---HTTCSEEEECSCTTHHHHHHHHHHHTTC-EEEEESS
T ss_pred             --cchhh---hhhcccccccccchhccccccccccccc-eeecccc
Confidence              11111   1368999999999999999999999995 4655443

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=5.3e-06  Score=66.45  Aligned_cols=74  Identities=23%  Similarity=0.263  Sum_probs=59.2

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      ||+|+|+ |++|+++++.+.+.+++++++..|...+.                  .        .+             .
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~------------------~--------~~-------------~   41 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL------------------S--------LL-------------T   41 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT------------------H--------HH-------------H
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch------------------h--------hh-------------c
Confidence            7999998 99999999999999999999887651000                  0        00             0


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                             ..++|+|+|.|......+.++.+++.|++.|+-|
T Consensus        42 -------~~~~DvvIDFS~p~~~~~~~~~~~~~~~~~ViGT   75 (135)
T d1yl7a1          42 -------DGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGT   75 (135)
T ss_dssp             -------TTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECC
T ss_pred             -------cccCCEEEEcccHHHHHHHHHHHHhcCCCEEEec
Confidence                   1367999999999999999999999999877644

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.11  E-value=3.4e-06  Score=69.56  Aligned_cols=91  Identities=19%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             ceeEEEEccCHHHHH-HHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            6 KIKIGINGFGRIGRL-VARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         6 ~irV~I~G~G~iG~~-llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      ++||||+|+|.+|+. .++++.++++++++ +.+.  +.+....   +.+.++...                    ++. 
T Consensus         1 tirvgiiG~G~~~~~~~~~~l~~~~~~~~~-~~d~--~~~~~~~---~~~~~~~~~--------------------~~~-   53 (167)
T d1xeaa1           1 SLKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTR--NPKVLGT---LATRYRVSA--------------------TCT-   53 (167)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECS--CHHHHHH---HHHHTTCCC--------------------CCS-
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhCCCcEEE-EEEC--CHHHHHH---HHHhccccc--------------------ccc-
Confidence            379999999999975 78889899999987 5554  2221111   111111000                    011 


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                       +.+++ . +.++|+|+-|||.....+.+.+++++|.. |.+-
T Consensus        54 -~~~~l-l-~~~iD~V~I~tp~~~H~~~~~~al~~gk~-V~~E   92 (167)
T d1xeaa1          54 -DYRDV-L-QYGVDAVMIHAATDVHSTLAAFFLHLGIP-TFVD   92 (167)
T ss_dssp             -STTGG-G-GGCCSEEEECSCGGGHHHHHHHHHHTTCC-EEEE
T ss_pred             -cHHHh-c-ccccceecccccccccccccccccccccc-cccC
Confidence             22332 1 24789999999999999999999999975 4443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=2.9e-06  Score=70.39  Aligned_cols=94  Identities=15%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             CCCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            3 GDKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         3 ~~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      .+.++||||+|+|++|+..++.+.+.+..+++.+.+.. +.+.          ...+.          ....       .
T Consensus         4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~-~~~~----------~~~~~----------~~~~-------~   55 (172)
T d1lc0a1           4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFV-SRRE----------LGSLD----------EVRQ-------I   55 (172)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEE-CSSC----------CCEET----------TEEB-------C
T ss_pred             CCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEecc-chHH----------HHHhh----------ccCc-------C
Confidence            34579999999999999999999887655555554431 1100          00000          0000       0


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                         +.+++ ....++|+|+.|||.....+.+.+++++|. .|.+--|
T Consensus        56 ---~~~e~-l~~~~iD~V~I~tp~~~H~~~~~~al~~gk-~V~~EKP   97 (172)
T d1lc0a1          56 ---SLEDA-LRSQEIDVAYICSESSSHEDYIRQFLQAGK-HVLVEYP   97 (172)
T ss_dssp             ---CHHHH-HHCSSEEEEEECSCGGGHHHHHHHHHHTTC-EEEEESC
T ss_pred             ---CHHHH-HhCCCcchhhhcccccccccccccccccch-hhhcCCC
Confidence               11111 123478999999999999999999999995 4555443

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.69  E-value=4.1e-05  Score=60.51  Aligned_cols=91  Identities=24%  Similarity=0.292  Sum_probs=63.1

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      |||||+|+ |++|+.+.+++.+++ .++++..+.                      .        .       ..     
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~-~~l~~~id~----------------------~--------~-------~~-----   37 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKG-HELVLKVDV----------------------N--------G-------VE-----   37 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEET----------------------T--------E-------EE-----
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCC-CeEEEEECC----------------------C--------c-------HH-----
Confidence            48999999 999999999887654 676655332                      0        0       00     


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCCCCCCeeeeccCccccC------CCCcEEeCCCC
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYK------PELDIVSNASC  157 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~~d~~~~V~Gvn~~~~~------~~~~iIsnp~C  157 (341)
                      +       ..++|+|+|.|......+.++.+++.|.+.|+-|          .|+++++++      +...++-.|++
T Consensus        38 ~-------~~~~DVvIDFS~p~~~~~~l~~~~~~~~p~ViGT----------TG~~~~~~~~i~~~ak~~pv~~a~N~   98 (128)
T d1vm6a3          38 E-------LDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGT----------TALKEEHLQMLRELSKEVPVVQAYSR   98 (128)
T ss_dssp             E-------CSCCSEEEECSCGGGHHHHHHHHHHHTCEEEECC----------CSCCHHHHHHHHHHTTTSEEEECSCT
T ss_pred             H-------hccCCEEEEecCHHHHHHHHHHHHhcCCCEEEEc----------CCCCHHHHHHHHHHHhhCCEEeeecc
Confidence            0       1257999999999999999999999998766544          366644332      23456655554

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.41  E-value=8.7e-05  Score=58.30  Aligned_cols=91  Identities=16%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEec
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGF   84 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~   84 (341)
                      .+.||.|+|||.+|+.|++.+..++.+++++.-|.  +.+          ..|+              .++|.+  ++..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDd--d~~----------k~G~--------------~I~Gi~--V~~~   53 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDV--DPE----------KVGR--------------PVRGGV--IEHV   53 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEES--CTT----------TTTC--------------EETTEE--EEEG
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeC--chH----------hcCC--------------EECCEE--EecH
Confidence            35799999999999999998877888999999875  111          1111              234433  3322


Q ss_pred             CCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE
Q 019445           85 RNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        85 ~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~  125 (341)
                      .+.+++.  ...+++++.|.|.....+.+..+.+.|.|.+.
T Consensus        54 ~~l~~~~--~~~i~iai~~i~~~~~~~I~d~l~~~gIk~I~   92 (126)
T d2dt5a2          54 DLLPQRV--PGRIEIALLTVPREAAQKAADLLVAAGIKGIL   92 (126)
T ss_dssp             GGHHHHS--TTTCCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHH--hhcccEEEEeCCHHHHHHHHHHHHHcCCCEEe
Confidence            2222221  24689999999988888888888889988553

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.38  E-value=5.4e-05  Score=65.78  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=62.7

Q ss_pred             ceeEEEEccC----HHHHHHHHHHHc-CCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            6 KIKIGINGFG----RIGRLVARVALQ-RDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         6 ~irV~I~G~G----~iG~~llr~l~~-~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      ++||||+|+|    ++++..+..+.+ .|+++|++|.|+  +.+......   ..++.-.                  ..
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~--~~~~~~~~~---~~~~~~~------------------~~   72 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNP--TLKSSLQTI---EQLQLKH------------------AT   72 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECS--CHHHHHHHH---HHTTCTT------------------CE
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcC--CHHHHHHHH---Hhccccc------------------ce
Confidence            5899999995    477777777765 578999999987  222111110   1111000                  01


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCC-----cEEEecCC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGA-----KKVVISAP  129 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~-----k~V~lSa~  129 (341)
                      .+.  +.+++ +...++|+|+.|||.....+.+..++++|.     |.|.+--|
T Consensus        73 ~~~--~~~~l-~~~~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKP  123 (237)
T d2nvwa1          73 GFD--SLESF-AQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWA  123 (237)
T ss_dssp             EES--CHHHH-HHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESS
T ss_pred             eec--chhhc-ccccccceeeccCCCcchhhHHHHHHHhcccccCCceEEEecc
Confidence            111  22222 113478999999999999999999999985     55666544

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0005  Score=57.61  Aligned_cols=33  Identities=27%  Similarity=0.265  Sum_probs=28.2

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .|.||.|.|+ |++|+.+++.|++.. .+++++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R   35 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVR   35 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEc
Confidence            5679999999 999999999888876 68888863

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.84  E-value=0.00092  Score=54.07  Aligned_cols=31  Identities=35%  Similarity=0.508  Sum_probs=25.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |||||+|+|++|..+++.|.+.. .+++.. |+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g-~~V~~~-d~   31 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRG-HYLIGV-SR   31 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE-CS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCC-CEEEEE-EC
Confidence            48999999999999999998765 576654 55

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.0031  Score=51.40  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC---CcEEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD---DVELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p---~~elv~i~~~   39 (341)
                      .+++|+|+|+|-+|+.++++|.++.   ++.++++.+.
T Consensus         3 k~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s   40 (168)
T d1ebfa1           3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEA   40 (168)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECS
T ss_pred             CEEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEe
Confidence            4689999999999999999998754   3577777664

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.39  E-value=0.0068  Score=47.18  Aligned_cols=88  Identities=20%  Similarity=0.173  Sum_probs=63.6

Q ss_pred             CceeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEE
Q 019445            5 KKIKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVA   80 (341)
Q Consensus         5 ~~irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~   80 (341)
                      +..+|+|+|+    |..|..++|.|.++..-+|.+||-.            +++.                   .|  ++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~------------~~~i-------------------~G--~~   53 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK------------EEEV-------------------QG--VK   53 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS------------CSEE-------------------TT--EE
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC------------cccc-------------------CC--eE
Confidence            3568999998    8999999999987655688888743            1111                   12  12


Q ss_pred             EEecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEE-ecCCC
Q 019445           81 VFGFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVV-ISAPS  130 (341)
Q Consensus        81 v~~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~-lSa~~  130 (341)
                      .+.  +.++++   ..+|+|+.++|.....+..+++.+.|+|.++ +|+-+
T Consensus        54 ~y~--sl~dlp---~~vDlvvi~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf   99 (129)
T d2csua1          54 AYK--SVKDIP---DEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGF   99 (129)
T ss_dssp             CBS--STTSCS---SCCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSS
T ss_pred             eec--chhhcC---CCCceEEEecChHHhHHHHHHHHHcCCCEEEEecccc
Confidence            222  456664   3799999999999999999999999999655 55433

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.24  E-value=0.0097  Score=47.28  Aligned_cols=33  Identities=30%  Similarity=0.296  Sum_probs=25.5

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      ++||+|+|+|++|..+.-.|..++-. ||+-+ |.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~-D~   38 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIV-DV   38 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEE-CS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEe-ec
Confidence            46999999999999999888876643 55444 54

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.16  E-value=0.0083  Score=45.78  Aligned_cols=81  Identities=21%  Similarity=0.370  Sum_probs=60.3

Q ss_pred             eEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEe
Q 019445            8 KIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFG   83 (341)
Q Consensus         8 rV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~   83 (341)
                      +|||+|+    |+.|..+++.|.++. ++|.+||-.            +++..                   |  ++.+.
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pVnP~------------~~~i~-------------------G--~~~y~   48 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPN------------YDEIE-------------------G--LKCYR   48 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT------------CSEET-------------------T--EECBS
T ss_pred             EEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEEccc------------ccccc-------------------C--ccccc
Confidence            7999997    789999999999987 689888732            11211                   2  12222


Q ss_pred             cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           84 FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        84 ~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                        +.++++   ..+|+++.++|.....+..+++.+.|.|.+.+-
T Consensus        49 --sl~~lp---~~~D~vvi~vp~~~~~~~l~~~~~~g~k~v~~~   87 (116)
T d1y81a1          49 --SVRELP---KDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQ   87 (116)
T ss_dssp             --SGGGSC---TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             --cchhcc---ccceEEEEEeCHHHHHHHHHHHHhcCCceEEec
Confidence              334443   468999999999999999999999999987764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.15  E-value=0.014  Score=45.83  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      |||+|+|+|.+|..+...|..++-+ || .+.|.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el-~L~Di   33 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLAREL-VLLDV   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEE-EEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceE-EEecc
Confidence            4899999999999999888877644 44 45564

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.01  Score=50.13  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEeeC
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQRDDV-ELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~~p~~-elv~i~~   38 (341)
                      ++.+|-|.|+ |++|+.+++.|.+++.+ ++.+++-
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R   48 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGR   48 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEec
Confidence            4468999999 99999999999988765 7777764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.05  E-value=0.004  Score=49.55  Aligned_cols=31  Identities=29%  Similarity=0.569  Sum_probs=26.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |||||+|+|.+|+.+++.|.++. +++...+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g-~~v~~~~~   31 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRG-VEVVTSLE   31 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEECCT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCC-CeEEEEcC
Confidence            48999999999999999999885 67766554

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.02  E-value=0.0077  Score=47.67  Aligned_cols=32  Identities=38%  Similarity=0.536  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      |||+|+|+|.+|..+.-.|...+-+ ||+ +.|.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elv-L~Di   33 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIA-LVDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEE-EECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEE-EEec
Confidence            4899999999999999888776644 454 4454

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.01  E-value=0.01  Score=47.14  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             CCCCCceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            1 MAGDKKIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         1 ~~~~~~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      |+.....||+|+|+|.+|..++-.|...+-+ ||+ +.|.
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~-L~Di   39 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIV-LIDA   39 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEE-EEee
Confidence            5555567999999999999999888776644 454 5554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0062  Score=44.33  Aligned_cols=88  Identities=18%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFR   85 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~   85 (341)
                      -.||+|+|+|.+|+.++|.|.++. .++... |.....+... .         +. .     .. .+        .+.+ 
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g-~~v~~~-D~~~~~~~~~-~---------~~-~-----~~-~~--------~~~~-   56 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARG-VTPRVM-DTRMTPPGLD-K---------LP-E-----AV-ER--------HTGS-   56 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTT-CCCEEE-ESSSSCTTGG-G---------SC-T-----TS-CE--------EESB-
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCC-CEEEEe-eCCcCchhHH-H---------Hh-h-----cc-ce--------eecc-
Confidence            458999999999999999999885 444333 4312211110 0         00 0     00 11        1111 


Q ss_pred             CCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEE
Q 019445           86 NPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKV  124 (341)
Q Consensus        86 ~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V  124 (341)
                       .....|  .++|.|+-+.|...+.+....+.++|+++|
T Consensus        57 -~~~~~~--~~~d~vi~SPGi~~~~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          57 -LNDEWL--MAADLIVASPGIALAHPSLSAAADAGIEIV   92 (93)
T ss_dssp             -CCHHHH--HHCSEEEECTTSCTTSHHHHHHHHTTCEEE
T ss_pred             -cchhhh--ccCCEEEECCCCCCCCHHHHHHHHcCCCeE
Confidence             111122  378999999998888888899999998643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.88  E-value=0.0057  Score=49.22  Aligned_cols=32  Identities=19%  Similarity=0.155  Sum_probs=25.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcC-CCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQR-DDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~-p~~elv~i~~~   39 (341)
                      .||+|+|+|.+|..+++.|.+. +..+|.++ |+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~-D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGY-DI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEE-CS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEE-EC
Confidence            4799999999999999999765 45676665 44

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.79  E-value=0.028  Score=44.45  Aligned_cols=30  Identities=30%  Similarity=0.475  Sum_probs=24.3

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEe
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDV-ELVAV   36 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~-elv~i   36 (341)
                      |||+|+|+ |.+|..++.+|..++-+ ||+-+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~   32 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLI   32 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccc
Confidence            48999998 99999999999888744 55443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.01  Score=47.09  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |||+|+|+|.+|..+...|.+.. .++..+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G-~~V~~~~   30 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQG-HEVQGWL   30 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCC-CceEEEE
Confidence            48999999999999999998764 4665554

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.56  E-value=0.015  Score=45.78  Aligned_cols=82  Identities=22%  Similarity=0.237  Sum_probs=61.2

Q ss_pred             eeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      .+|||+|+    |+.|..+++.|.++. +++.+||-.            +++                   +.|.  +++
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~------------~~~-------------------i~G~--~~~   65 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPK------------YEE-------------------VLGR--KCY   65 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTT------------CSE-------------------ETTE--ECB
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCc------------ccc-------------------cCCC--ccc
Confidence            47999998    789999999999886 689899743            111                   1122  222


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .  +.++++   ..+|+|+.++|.....+.++++++.|+|.+.+.
T Consensus        66 ~--sl~dlp---~~iD~v~i~vp~~~~~~~~~e~~~~g~k~v~~~  105 (139)
T d2d59a1          66 P--SVLDIP---DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQ  105 (139)
T ss_dssp             S--SGGGCS---SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             c--cccccC---ccceEEEEEeCHHHHHHHHHHHHHhCCCEEEEe
Confidence            2  344443   368999999999999999999999999988764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.42  E-value=0.0047  Score=49.16  Aligned_cols=32  Identities=13%  Similarity=0.202  Sum_probs=24.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ||||++|+|.+|..+++-|.++...++ .+.++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i-~v~~r   32 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRI-YIANR   32 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEE-EEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcE-EEEeC
Confidence            489999999999999997766543455 45565

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.33  E-value=0.01  Score=49.13  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=21.8

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRD   29 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p   29 (341)
                      .|.||+|+|+|..|..+...|.+..
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g   30 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKC   30 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTE
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcC
Confidence            4568999999999999999998764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.11  E-value=0.037  Score=43.93  Aligned_cols=24  Identities=17%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRD   29 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p   29 (341)
                      ++||+|+|| |.+|..++-+|...+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcc
Confidence            579999999 999999998888765

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.00  E-value=0.056  Score=43.34  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=26.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      ..||+|+|+|.+|..++-.|..++-+ ||+ +.|.
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~Elv-LiD~   53 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELA-LVDV   53 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEE-EEEe
Confidence            36999999999999999999888754 454 4454

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.68  E-value=0.051  Score=42.46  Aligned_cols=32  Identities=41%  Similarity=0.590  Sum_probs=23.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      |||+|+|+|.+|..+.-.|..++-+ ||+ +.|.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~-L~Di   33 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMV-LIDV   33 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEE-EEec
Confidence            4899999999999988877766543 554 4454

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=94.61  E-value=0.0061  Score=48.23  Aligned_cols=29  Identities=17%  Similarity=0.258  Sum_probs=20.5

Q ss_pred             EEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            9 IGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         9 V~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ||++|+|++|+.+++.|.+.  .++..|.++
T Consensus         2 IgfIG~G~mg~~l~~~L~~~--~~~~~v~~R   30 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDR--YEIGYILSR   30 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC------CCCEECS
T ss_pred             EEEEeCcHHHHHHHHHHHhC--CCEEEEEeC
Confidence            69999999999999988654  344456665

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.59  E-value=0.083  Score=41.31  Aligned_cols=32  Identities=34%  Similarity=0.369  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      .||+|+|+|.+|..+.-.|..++-+ ||+ +.|.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~-L~D~   34 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELV-LIDV   34 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEE-EECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEE-EEec
Confidence            4899999999999999888887654 444 4453

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.58  E-value=0.038  Score=43.62  Aligned_cols=32  Identities=34%  Similarity=0.498  Sum_probs=24.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      .||+|+|+|++|..++-.|..++-. ||+ +.|.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elv-L~Di   34 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYV-FIDA   34 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEE-EEec
Confidence            4899999999999998877765533 555 4454

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.52  E-value=0.03  Score=43.95  Aligned_cols=29  Identities=31%  Similarity=0.422  Sum_probs=23.6

Q ss_pred             ceeEEEEc-cCHHHHHHHHHHHcCCCcEEEE
Q 019445            6 KIKIGING-FGRIGRLVARVALQRDDVELVA   35 (341)
Q Consensus         6 ~irV~I~G-~G~iG~~llr~l~~~p~~elv~   35 (341)
                      +.||+|+| .|.+|+.+.+.|.+.. +++..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~   38 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASG-YPISI   38 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTT-CCEEE
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcC-CCcEe
Confidence            46999999 6999999999998775 45433

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=94.46  E-value=0.059  Score=42.33  Aligned_cols=32  Identities=25%  Similarity=0.296  Sum_probs=24.8

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ||+|+|+ |.+|..+.-.|...+-+.-..+.|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            8999996 9999999998888775533345553

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.43  E-value=0.028  Score=45.58  Aligned_cols=100  Identities=17%  Similarity=0.124  Sum_probs=53.7

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      +|.|+|+|.+|...++++....--+++ +.+.+......+.  ++    |.-  ..+...+. .+.   +.+  .   +.
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi-~~d~~~~r~~~a~--~l----Ga~--~~i~~~~~-~~~---~~v--~---~~   91 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRII-GVGSRPICVEAAK--FY----GAT--DILNYKNG-HIE---DQV--M---KL   91 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEE-EECCCHHHHHHHH--HH----TCS--EEECGGGS-CHH---HHH--H---HH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccc-cccchhhhHHHHH--hh----Ccc--ccccccch-hHH---HHH--H---HH
Confidence            699999999999999888765422344 4444121122221  11    100  00100000 000   000  0   00


Q ss_pred             CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .    +..++|+||+|+|...+.+.+-..++.|-+.+.+..+
T Consensus        92 t----~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          92 T----NGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             T----TTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             h----hccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeec
Confidence            0    0137999999999888778777777777766665543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.10  E-value=0.031  Score=45.30  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=27.4

Q ss_pred             CccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           96 GAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        96 ~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      ++|+||+|+|...+.+.+-.+++.|-+.+.+..+
T Consensus       100 g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2         100 GADFILEATGDSRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             CEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             CceEEeecCCchhHHHHHHHHhcCCCEEEEEeec
Confidence            6999999999988888888888888776666543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.08  E-value=0.028  Score=44.15  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .||+|+|+|++|..++-+|..++-.|++-+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~   31 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLL   31 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEE
Confidence            489999999999999988887765576665

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.00  E-value=0.021  Score=45.37  Aligned_cols=95  Identities=9%  Similarity=0.021  Sum_probs=55.0

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      .||.|+|+|++|+.+++.|.++. .+|+-++......+.++      +.   +. .              ..+ .....+
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g-~~V~v~dr~~~~a~~l~------~~---~~-~--------------~~~-~~~~~~   56 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSG-IKVTVACRTLESAKKLS------AG---VQ-H--------------STP-ISLDVN   56 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTT-CEEEEEESCHHHHHHHH------TT---CT-T--------------EEE-EECCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEEECChHHHHHHH------hc---cc-c--------------ccc-cccccc
Confidence            58999999999999999999886 57665543311112211      11   11 0              000 000000


Q ss_pred             C-CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           87 P-EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        87 ~-~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      . ....=.....|+++.++|.......+..+.+.++..++++
T Consensus        57 ~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          57 DDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             CHHHHHHHHTTSSEEEECSCGGGHHHHHHHHHHHTCEEECSS
T ss_pred             chhhhHhhhhccceeEeeccchhhhHHHHHHHhhccceeecc
Confidence            0 0000001356889999998887777777788888666554

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.95  E-value=0.065  Score=42.92  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=27.1

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      .+.||+|+|+|.+|..++-.|...+-+ ||+ +.|.
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elv-L~D~   52 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELA-LVDA   52 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEE-EECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence            446899999999999999999988765 454 4454

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.03  Score=44.62  Aligned_cols=112  Identities=15%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhc-ccccccCcccCceeeecCCc-------ceEEC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMF-KYDSVHGQWKHNELKVKDEK-------TLLFG   75 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll-~~ds~~g~~~~~~v~~~~~~-------~l~i~   75 (341)
                      |.||+|.|. |-||...+..+.+|| +|+++++... ...+.+.... +|.   +++-    -..+..       .+.-.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~-~N~~~L~~q~~~f~---pk~v----~i~d~~~~~~l~~~l~~~   72 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG-KNVTRMVEQCLEFS---PRYA----VMDDEASAKLLKTMLQQQ   72 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES-SCHHHHHHHHHHHC---CSEE----EESSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec-CcHHHHHHHHHHHh---hccc----ccccHHHHHHHHHHhhhh
Confidence            368999999 999999999999997 5999999765 3333222211 111   1111    010000       00001


Q ss_pred             CEEEEEEe-cCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           76 EKPVAVFG-FRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        76 g~~i~v~~-~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +..+.++. +.+..++- ...++|+|+.+..-+...+..-.+++.|. ++-|.
T Consensus        73 ~~~~~~~~g~~~l~~~~-~~~~~D~vi~AI~G~aGL~~t~~aik~gk-~iaLA  123 (151)
T d1q0qa2          73 GSRTEVLSGQQAACDMA-ALEDVDQVMAAIVGAAGLLPTLAAIRAGK-TILLA  123 (151)
T ss_dssp             TCCCEEEESHHHHHHHH-TCTTCCEEEECCSSGGGHHHHHHHHHTTC-EEEEC
T ss_pred             ccccccccChHHHHHHh-cCCCCCEEEEecCcccHHHHHHHHHhcCC-eEEEE
Confidence            11122221 10111100 01378999999999888888888899986 35453

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.90  E-value=0.037  Score=45.02  Aligned_cols=91  Identities=12%  Similarity=0.065  Sum_probs=48.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      |||+|+|+|..|..++..|.+.. .++. +-.+..+.+....+ .-...++.+. .        .  +....+..  ..+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g-~~V~-l~~r~~~~~~~~~i-~~~~~~~~~~-~--------~--~~~~~i~~--~~~   64 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNG-NEVR-IWGTEFDTEILKSI-SAGREHPRLG-V--------K--LNGVEIFW--PEQ   64 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHC-CEEE-EECCGGGHHHHHHH-HTTCCBTTTT-B--------C--CCSEEEEC--GGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEE-EEEecccHHHHHHH-hhhhhhhhhc-c--------h--hccccccc--ccc
Confidence            48999999999999999998653 2333 32221232222211 1111222222 1        0  11122211  112


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHH
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAH  116 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~  116 (341)
                      .++   ...++|+|+.|+|...-++.+.++
T Consensus        65 ~~~---~~~~ad~Ii~avps~~~~~~~~~l   91 (180)
T d1txga2          65 LEK---CLENAEVVLLGVSTDGVLPVMSRI   91 (180)
T ss_dssp             HHH---HHTTCSEEEECSCGGGHHHHHHHH
T ss_pred             HHH---HHhccchhhcccchhhhHHHHHhh
Confidence            222   124789999999987776666654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.77  E-value=0.022  Score=45.80  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=24.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .||+|+|+|.+|..+...|.++. .++..+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G-~~V~~~   30 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKG-QSVLAW   30 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECccHHHHHHHHHHHHCC-CEEEEE
Confidence            48999999999999999999876 455444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=93.52  E-value=0.037  Score=44.27  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=26.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ..||.|+|+|.+|+.+++.|..+. .+-+.|..+
T Consensus        24 ~~~ilviGaG~~g~~v~~~L~~~g-~~~i~v~nR   56 (159)
T d1gpja2          24 DKTVLVVGAGEMGKTVAKSLVDRG-VRAVLVANR   56 (159)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHC-CSEEEEECS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            468999999999999999999875 543455554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.38  E-value=0.036  Score=42.53  Aligned_cols=30  Identities=27%  Similarity=0.525  Sum_probs=25.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |||-|+|+|++|+.+++.|.++. .+++.|-
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g-~~v~vid   30 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKG-HDIVLID   30 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CCcceec
Confidence            48999999999999999998775 6777774

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.088  Score=41.97  Aligned_cols=97  Identities=22%  Similarity=0.246  Sum_probs=55.8

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      +|.|.|+|.+|...+.++.....-.++.+ +.......++.  +    +|.            ...+      ...+.++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~-d~~~~rl~~a~--~----~Ga------------~~~~------~~~~~~~   83 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVT-DLSATRLSKAK--E----IGA------------DLVL------QISKESP   83 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEE-ESCHHHHHHHH--H----TTC------------SEEE------ECSSCCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEec-cCCHHHHHHHH--H----hCC------------cccc------ccccccc
Confidence            79999999999999988877653345554 43111111111  1    110            0000      0000011


Q ss_pred             CCC------CccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCCC
Q 019445           88 EEI------PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS  130 (341)
Q Consensus        88 ~~~------~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~~  130 (341)
                      .+.      .+ ..++|+||+|+|...+.+.+-.+++.|-+.+.+..+.
T Consensus        84 ~~~~~~~~~~~-g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          84 QEIARKVEGQL-GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HHHHHHHHHHH-TSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             ccccccccccC-CCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence            000      01 1378999999999888888888888887766665443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.11  E-value=0.092  Score=41.19  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=24.5

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ||+|+|+ |.+|..++-+|...+-+.-..+.|.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi   34 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI   34 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEec
Confidence            8999998 9999999999988875433333354

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=93.00  E-value=0.04  Score=43.78  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCC---cce--EECCEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRD-DVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDE---KTL--LFGEKP   78 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~---~~l--~i~g~~   78 (341)
                      +.||+|.|+ |-||...+..+.+|| +|+|+++... ...+.+....+  ...+++.    -..+.   ..+  ...+..
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~-~N~~~L~~q~~--ef~Pk~v----~i~d~~~~~~l~~~~~~~~   74 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN-RNVKDLADAAK--RTNAKRA----VIADPSLYNDLKEALAGSS   74 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES-SCHHHHHHHHH--HTTCSEE----EESCGGGHHHHHHHTTTCS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC-CCHHHHHHHHH--hhccccc----eeccHHHHHHHHHHhhhcc
Confidence            479999999 999999999999997 4999999765 33333322211  1111111    00000   000  001111


Q ss_pred             EEEEecCC-CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           79 VAVFGFRN-PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        79 i~v~~~~~-~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      +.++...+ ..++  ...++|+|+.|...+...+..-.+++.|. .+-|.
T Consensus        75 ~~v~~g~~~l~~~--~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk-~iaLA  121 (150)
T d1r0ka2          75 VEAAAGADALVEA--AMMGADWTMAAIIGCAGLKATLAAIRKGK-TVALA  121 (150)
T ss_dssp             SEEEESHHHHHHH--HTSCCSEEEECCCSGGGHHHHHHHHHTTS-EEEEC
T ss_pred             cccccCccchhee--cccccceeeeecCchhHHHHHHHHHhcCC-EEEEe
Confidence            22222111 0111  12368999999998888888888899985 45554

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.00  E-value=0.077  Score=39.51  Aligned_cols=90  Identities=14%  Similarity=0.055  Sum_probs=51.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      .||.|+|+|.+|..-+|.|++.. .+++.+... ...+.. .+.   .             .+ .+..      .....+
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~g-a~v~v~~~~-~~~~~~-~~~---~-------------~~-~i~~------~~~~~~   66 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAG-ARLTVNALT-FIPQFT-VWA---N-------------EG-MLTL------VEGPFD   66 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-BEEEEEESS-CCHHHH-HHH---T-------------TT-SCEE------EESSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CeEEEEecc-CChHHH-HHH---h-------------cC-Ccee------eccCCC
Confidence            68999999999999999999885 565555332 222211 110   0             00 1111      011112


Q ss_pred             CCCCCccCCCccEEEecCCCc-cCHHHHHHHHhCCCcEEEe
Q 019445           87 PEEIPWAKTGAEYVVESTGVF-TDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~-~s~~~~~~~l~~G~k~V~l  126 (341)
                      ++.+    .++++|+-||+.. .+.+....+.+.|+.+-+.
T Consensus        67 ~~dl----~~~~lv~~at~d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          67 ETLL----DSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             GGGG----TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEET
T ss_pred             HHHh----CCCcEEeecCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            2222    4789999998764 4455556666778754443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.76  E-value=0.024  Score=45.78  Aligned_cols=99  Identities=18%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      -+|.|+|+|.+|...+.++.... .+.+.+.+.  +.+.+....+    +|.-  ..+...+. .         ...  .
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~--~~~k~~~a~~----~Ga~--~~i~~~~~-~---------~~~--~   88 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDI--VESRLELAKQ----LGAT--HVINSKTQ-D---------PVA--A   88 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHT-CSEEEEEES--CHHHHHHHHH----HTCS--EEEETTTS-C---------HHH--H
T ss_pred             CEEEEeCCCHHHhhhhhcccccc-cceeeeecc--HHHHHHHHHH----cCCe--EEEeCCCc-C---------HHH--H
Confidence            37999999999999998887665 344455554  1111111111    1100  00000000 0         000  0


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                      ..++  ...++|+||+|+|...+.+.+.+.++.|-+.+.+..
T Consensus        89 i~~~--t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          89 IKEI--TDGGVNFALESTGSPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HHHH--TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHH--cCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEee
Confidence            0000  013689999999998877777777766666555543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.63  E-value=0.082  Score=42.66  Aligned_cols=96  Identities=11%  Similarity=0.055  Sum_probs=53.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      -+|.|+|+|-+|...+.++.... ...+.+.+.+.....++..+.-+.+                  ++.      .+.+
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~~~------------------i~~------~~~~   84 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGATDC------------------LNP------RELD   84 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSEE------------------ECG------GGCS
T ss_pred             CEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCCcc------------------cCC------ccch
Confidence            37999999999999998887765 4444555552222333322211111                  100      0000


Q ss_pred             CC--C-C-CccCCCccEEEecCCCccCHHHHHHHHhCC-CcEEEec
Q 019445           87 PE--E-I-PWAKTGAEYVVESTGVFTDKDKAAAHLKGG-AKKVVIS  127 (341)
Q Consensus        87 ~~--~-~-~w~~~~~DvV~~at~~~~s~~~~~~~l~~G-~k~V~lS  127 (341)
                      ..  . . .-...++|+||||+|...+.+.+-..++.| =+.+++.
T Consensus        85 ~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          85 KPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECC
T ss_pred             hhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecC
Confidence            00  0 0 001248999999999988877777776665 3444443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.26  Score=38.47  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             eeEEEEcc-CHHHHHHHHHHH-cCCCcEEEEeeCC
Q 019445            7 IKIGINGF-GRIGRLVARVAL-QRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~-~~p~~elv~i~~~   39 (341)
                      |||+|+|+ |.+|..+.-+|. +.+...-..+.|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~   35 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecc
Confidence            48999997 999998876654 5554432344454

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.06  Score=42.90  Aligned_cols=94  Identities=17%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRN   86 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~   86 (341)
                      -+|.|+|+|-+|...++++.... .+.+.+.+. .....++.-+.-|                  ..++        ..+
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~G-a~~i~~~~~-~~~~~~a~~lGad------------------~~i~--------~~~   83 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMG-AHVVAFTTS-EAKREAAKALGAD------------------EVVN--------SRN   83 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESS-GGGHHHHHHHTCS------------------EEEE--------TTC
T ss_pred             CEEEEeccchHHHHHHHHhhccc-ccchhhccc-hhHHHHHhccCCc------------------EEEE--------Cch
Confidence            37999999999999998887664 666665543 2221111111111                  0010        001


Q ss_pred             CCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           87 PEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        87 ~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                      .........++|++|+|++...+.+.+-..++.|-+.+.+..
T Consensus        84 ~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          84 ADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             HHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCC
T ss_pred             hhHHHHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEecc
Confidence            111111124799999999988887777666666655555543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.33  E-value=0.11  Score=41.15  Aligned_cols=33  Identities=33%  Similarity=0.431  Sum_probs=25.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +.||+|+|+|.+|..+.-+|..++=-||+ +.|.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~-L~Di   35 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVV-LFDI   35 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEE-EECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEE-EEec
Confidence            35999999999999998888777644654 5564

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.27  E-value=0.2  Score=39.46  Aligned_cols=98  Identities=12%  Similarity=0.067  Sum_probs=55.0

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      +|.|.|+|.+|...++++.... .+++++...   .+.+....+    .|...          .+..+..      ..+.
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~---~~r~~~a~~----~ga~~----------~~~~~~~------~~~~   84 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYG-AFVVCTARS---PRRLEVAKN----CGADV----------TLVVDPA------KEEE   84 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEEESC---HHHHHHHHH----TTCSE----------EEECCTT------TSCH
T ss_pred             EEEEEcccccchhhHhhHhhhc-ccccccchH---HHHHHHHHH----cCCcE----------EEecccc------cccc
Confidence            7999999999999998887776 687776432   221111111    11000          0000000      0000


Q ss_pred             CC----C-CccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecCC
Q 019445           88 EE----I-PWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAP  129 (341)
Q Consensus        88 ~~----~-~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa~  129 (341)
                      .+    + .....++|+||+|+|...+.+.+-+.++.|-+.+.+..+
T Consensus        85 ~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          85 SSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             chhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecC
Confidence            00    0 000136899999999887778777777777766665543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.97  E-value=0.07  Score=44.05  Aligned_cols=30  Identities=30%  Similarity=0.444  Sum_probs=25.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|+||+++++.+..-. +++.+..
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg-~~v~~~d   79 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFG-FNVLFYD   79 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             ceEEEeccccccccceeeeeccc-cceeecc
Confidence            58999999999999999998774 7776553

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.91  E-value=0.065  Score=44.40  Aligned_cols=29  Identities=21%  Similarity=0.428  Sum_probs=24.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|+||+++++.+..-. +++.+.
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg-~~v~~~   74 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFG-AKVIAY   74 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             eeeeeeecccccccccccccccc-eeeecc
Confidence            58999999999999999998765 777655

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.73  E-value=0.072  Score=44.12  Aligned_cols=29  Identities=17%  Similarity=0.399  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|+||+++++.+..-. +++.+.
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg-~~V~~~   72 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFG-AKVITY   72 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CeEEEecccccchhHHHhHhhhc-cccccc
Confidence            68999999999999999998765 777655

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.084  Score=43.35  Aligned_cols=34  Identities=24%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             CCceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            4 DKKIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         4 ~~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      ||..||||+|+|.+|+.++.+++.+. ++++ +.|.
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G-~~V~-l~D~   35 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATG-HTVV-LVDQ   35 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECS
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCC-CcEE-EEEC
Confidence            45569999999999999999888876 6654 4454

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=91.68  E-value=0.097  Score=40.59  Aligned_cols=85  Identities=12%  Similarity=0.046  Sum_probs=58.9

Q ss_pred             eeEEEEcc----CHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEE
Q 019445            7 IKIGINGF----GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVF   82 (341)
Q Consensus         7 irV~I~G~----G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~   82 (341)
                      .+|||+|+    ++.|..+++.|.++. +.+..++-. ..         .+.                   +.|.  +.+
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g-~~~~~v~~~-~~---------~~~-------------------i~g~--~~~   61 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPR-FQ---------GEE-------------------LFGE--EAV   61 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGG-GT---------TSE-------------------ETTE--ECB
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCC-CCceEEEec-cc---------cce-------------------eece--ecc
Confidence            47999998    889999999999886 566666532 00         011                   1121  122


Q ss_pred             ecCCCCCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           83 GFRNPEEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        83 ~~~~~~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                      .  ++.+++   ..+|+|+.++|.....+..+++.+.|+|.+.+..
T Consensus        62 ~--~l~~i~---~~iD~v~v~~p~~~v~~~v~~~~~~g~k~i~~q~  102 (136)
T d1iuka_          62 A--SLLDLK---EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQS  102 (136)
T ss_dssp             S--SGGGCC---SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEECT
T ss_pred             c--chhhcc---CCCceEEEeccHHHHHHHHHHHHhhCCCeEEEec
Confidence            1  334443   3689999999998888888888999999887753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.67  E-value=0.44  Score=40.81  Aligned_cols=102  Identities=17%  Similarity=0.246  Sum_probs=59.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCC-----Chhhhhhhcccc-----cccCcccCceeeecCCcceEECC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFI-----STDYMTYMFKYD-----SVHGQWKHNELKVKDEKTLLFGE   76 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~-----~~~~~a~ll~~d-----s~~g~~~~~~v~~~~~~~l~i~g   76 (341)
                      .||+|=|||.+|+.++|.|.+.. ..+++|.|...     ++=+...++++-     ...++.. . .  .+  .  .+.
T Consensus        37 ~~v~IQGfGnVG~~~a~~L~e~G-akvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~-~-~--~~--~--~~~  107 (255)
T d1bgva1          37 KTVALAGFGNVAWGAAKKLAELG-AKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQ-D-Y--AD--K--FGV  107 (255)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHHT-CEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTH-H-H--HH--H--HTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchh-h-h--hh--h--cCc
Confidence            69999999999999999999876 89999987511     110011111110     0001110 0 0  00  0  011


Q ss_pred             EEEEEEecCCCCCCCccCCCccEEEecCC-CccCHHHHHHHHhCCCcEEE
Q 019445           77 KPVAVFGFRNPEEIPWAKTGAEYVVESTG-VFTDKDKAAAHLKGGAKKVV  125 (341)
Q Consensus        77 ~~i~v~~~~~~~~~~w~~~~~DvV~~at~-~~~s~~~~~~~l~~G~k~V~  125 (341)
                      +   .+   +++++ |. .++|+.|-|.- ...+.+.+..+...|||.|+
T Consensus       108 ~---~~---~~~~~-~~-~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~  149 (255)
T d1bgva1         108 Q---FF---PGEKP-WG-QKVDIIMPCATQNDVDLEQAKKIVANNVKYYI  149 (255)
T ss_dssp             E---EE---ETCCG-GG-SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEE
T ss_pred             e---ee---chhhc-cc-ccccEEeeccccccccHHHHHhhhhcCceEEe
Confidence            1   11   23333 63 68999998755 45678888888888998665

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.35  E-value=0.42  Score=38.49  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.2

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHc
Q 019445            6 KIKIGINGF-GRIGRLVARVALQ   27 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~   27 (341)
                      .+||.|+|| |.||..++-.|.+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~   46 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLAS   46 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHc
Confidence            579999999 9999999877764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.28  E-value=0.077  Score=42.12  Aligned_cols=31  Identities=29%  Similarity=0.345  Sum_probs=25.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .|||++|.|++|..+++.|.++. +++ .+.|+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g-~~v-~~~d~   32 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAG-YLL-NVFDL   32 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEE-EEECS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCC-CeE-EEEEC
Confidence            58999999999999999998875 565 44454

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.19  E-value=0.079  Score=41.98  Aligned_cols=31  Identities=32%  Similarity=0.619  Sum_probs=25.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |||||+|.|.+|..+++.|.++. +++. +.|+
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G-~~V~-~~d~   31 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAG-YSLV-VSDR   31 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEE-EECS
T ss_pred             CEEEEEehhHHHHHHHHHHHHCC-CeEE-EEeC
Confidence            48999999999999999998875 5654 4555

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=91.18  E-value=0.09  Score=41.68  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=25.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +.||+|+|+|++|..+.-+|...+-.|++ +.|.
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~-L~D~   39 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVV-LYDV   39 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEE-EECS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEE-EEEe
Confidence            47999999999999988877776645766 4454

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.01  E-value=0.26  Score=38.64  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             CceeEEEEcc-CHHHHHHHHHHHc
Q 019445            5 KKIKIGINGF-GRIGRLVARVALQ   27 (341)
Q Consensus         5 ~~irV~I~G~-G~iG~~llr~l~~   27 (341)
                      .++||+|+|| |.+|..++-.|.+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~   25 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGN   25 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHH
Confidence            3689999998 9999998877764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.64  E-value=0.091  Score=43.29  Aligned_cols=29  Identities=31%  Similarity=0.551  Sum_probs=23.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      |||+|+|+||+|..++-.+++.. .+++++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g-~~V~g~   29 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARG-HEVIGV   29 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCC-CcEEEE
Confidence            48999999999999988888764 676655

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.63  E-value=0.12  Score=42.02  Aligned_cols=30  Identities=37%  Similarity=0.564  Sum_probs=25.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .++||+|+|+||+++.+.+..-. +++.+..
T Consensus        45 k~vgiiG~G~IG~~va~~~~~fg-~~v~~~d   74 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAFG-AYVVAYD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             eeeeeccccchhHHHHHHhhhcc-ceEEeec
Confidence            58999999999999999998765 6776553

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.55  E-value=0.11  Score=42.60  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=26.3

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCc-EEEEee
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDV-ELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~-elv~i~   37 (341)
                      +.||.|.|+ |++|+.+++.|.++++. ++..+.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~   35 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPA   35 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCB
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEe
Confidence            469999999 99999999999988864 554443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=90.53  E-value=0.28  Score=38.22  Aligned_cols=32  Identities=34%  Similarity=0.414  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCc-EEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDV-ELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~-elv~i~~~   39 (341)
                      -||+|+|+|.+|..++-.|...+-+ ||+-+ |.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~-D~   34 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLE-DI   34 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEE-CS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEE-Ee
Confidence            4899999999999998877776644 56544 53

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.38  E-value=0.11  Score=42.32  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=24.5

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|+||+++.+++.... +++.+.
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g-~~v~~~   71 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALG-AQVRGF   71 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTT-CEEEEE
T ss_pred             ceEEEeccccccccceeeeeccc-cccccc
Confidence            58999999999999999998765 666555

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.13  E-value=0.13  Score=43.48  Aligned_cols=31  Identities=29%  Similarity=0.535  Sum_probs=26.9

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |||-|.|+ |++|+.|++.|.++. .+++++.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g-~~Vi~~~r   33 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKN-VEVIPTDV   33 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSS-EEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC-CEEEEeec
Confidence            57999999 999999999998875 78888753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.65  E-value=0.12  Score=41.50  Aligned_cols=31  Identities=23%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |||||+|.|.+|..++|.|.++. +++ .+.|+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G-~~V-~~~dr   32 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKG-FKV-AVFNR   32 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCE-EEECS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCC-CeE-EEEEC
Confidence            48999999999999999999875 565 45555

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=89.37  E-value=0.11  Score=39.48  Aligned_cols=29  Identities=24%  Similarity=0.480  Sum_probs=24.0

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |+.|+|+|++|+.+++.|.++. .+++.|-
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g-~~vvvid   30 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMG-HEVLAVD   30 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCC-CeEEEec
Confidence            6899999999999999998765 4555663

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=89.28  E-value=0.18  Score=41.26  Aligned_cols=29  Identities=34%  Similarity=0.566  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|||+|+|+||+++++.+.... +++.+.
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg-~~v~~~   76 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFD-MDIDYF   76 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             cceEEeecccchHHHHHHHHhhc-cccccc
Confidence            68999999999999999998765 676554

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.18  Score=41.10  Aligned_cols=30  Identities=27%  Similarity=0.414  Sum_probs=24.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|+||+++++.+.... +++.+..
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg-~~v~~~d   74 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESLG-MYVYFYD   74 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             eEEEEeecccchhhhhhhccccc-ceEeecc
Confidence            58999999999999999987764 7765553

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.87  E-value=0.19  Score=44.39  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=27.4

Q ss_pred             CCCCCceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            1 MAGDKKIKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         1 ~~~~~~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |++ + |||-|.|+ |++|+.+++.|.+.. .+++.+.
T Consensus        12 ~~~-n-MKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d   46 (363)
T d2c5aa1          12 PSE-N-LKISITGAGGFIASHIARRLKHEG-HYVIASD   46 (363)
T ss_dssp             TTS-C-CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCC-C-CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEe
Confidence            554 3 58999999 999999999999875 4776663

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=88.61  E-value=0.18  Score=44.22  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=27.4

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |||-|.|+ |+||+.+++.|+++++.+|.++..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~   33 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            38999999 999999999998877778888743

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.58  E-value=0.21  Score=40.59  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=22.1

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      |||+|+|.||+|..++-.+ .+ ..+++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~-g~~V~g~   28 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SL-QNEVTIV   28 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TT-TSEEEEE
T ss_pred             CEEEEECCChhHHHHHHHH-HC-CCcEEEE
Confidence            4899999999999887544 55 4787766

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.06  E-value=0.93  Score=35.63  Aligned_cols=100  Identities=15%  Similarity=0.145  Sum_probs=53.5

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCCCCChhhhhhhcccccccCcccCceeeecCCcceEECCEEEEEEecCCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNP   87 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~~~~~~~~a~ll~~ds~~g~~~~~~v~~~~~~~l~i~g~~i~v~~~~~~   87 (341)
                      +|.|.|+|-+|...+.++.....-+++++... .....++..+..+.        .+...+.      ...+  ...  .
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~-~~k~~~a~~~Ga~~--------~i~~~~~------~~~~--~~~--~   91 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN-KDKFAKAKEVGATE--------CVNPQDY------KKPI--QEV--L   91 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSC-GGGHHHHHHTTCSE--------EECGGGC------SSCH--HHH--H
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCc-HHHHHHHHHhCCee--------EEecCCc------hhHH--HHH--H
Confidence            69999998899998888887764566555432 22222222111110        0000000      0000  000  0


Q ss_pred             CCCCccCCCccEEEecCCCccCHHHHHHHHhCCCcEEEecC
Q 019445           88 EEIPWAKTGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISA  128 (341)
Q Consensus        88 ~~~~w~~~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lSa  128 (341)
                      ...  ...++|++|+|++...+.+.+-..+..|..++++..
T Consensus        92 ~~~--~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          92 TEM--SNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             HHH--TTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECS
T ss_pred             HHH--hcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEec
Confidence            000  013799999999998887777777777655555443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.01  E-value=0.27  Score=38.52  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=23.3

Q ss_pred             eeEEEEc-cCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGING-FGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G-~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      |||+|+| +|.+|+.+.+.|.++. .+++..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G-~~V~l~   30 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLG-HEIVVG   30 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTT-CEEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCC-CEEEEE
Confidence            4899995 5999999999999886 555544

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.77  E-value=0.23  Score=40.16  Aligned_cols=32  Identities=16%  Similarity=0.206  Sum_probs=26.1

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEee
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRD-DVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~   37 (341)
                      |.||-|.|+ |.+|+.+++.|+++. .+.++.+.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~   36 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   36 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEc
Confidence            469999999 999999999998764 46666654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=87.75  E-value=0.23  Score=40.41  Aligned_cols=30  Identities=33%  Similarity=0.404  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|||+|+|+||+++++.|.... +++.+..
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg-~~v~~~d   74 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFD-VHLHYTD   74 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGT-CEEEEEC
T ss_pred             cceeeccccccchhhhhhhhccC-ceEEEEe
Confidence            68999999999999999998754 5655553

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.67  E-value=0.29  Score=38.22  Aligned_cols=31  Identities=29%  Similarity=0.522  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      |||||+|+|.+|..+++-|.+.+ .++. +.++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~-~~i~-v~~r   31 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTP-HELI-ISGS   31 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEE-EECS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCC-CeEE-EEcC
Confidence            48999999999999999998876 3543 4444

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.61  E-value=0.17  Score=43.09  Aligned_cols=32  Identities=19%  Similarity=0.222  Sum_probs=27.5

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |.||-|.|+ |++|+.+++.|.++. .+++++..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R   35 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFR   35 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEC
Confidence            568999999 999999999999886 67777754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.30  E-value=0.27  Score=39.59  Aligned_cols=32  Identities=19%  Similarity=0.160  Sum_probs=26.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHc-CCCcEEEEeeC
Q 019445            7 IKIGINGFGRIGRLVARVALQ-RDDVELVAVND   38 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~-~p~~elv~i~~   38 (341)
                      |||.|+|+|++|-++++.|.+ .++.+++-+..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~   33 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEK   33 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEES
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            489999999999999998876 46778776653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=87.04  E-value=0.3  Score=39.47  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=26.8

Q ss_pred             CceeEEEEccCHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            5 KKIKIGINGFGRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         5 ~~irV~I~G~G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      .+.||+|+|+|..|.+.++.|..+. .+++-+..
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G-~~Vtl~E~   74 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARG-HQVTLFDA   74 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT-CEEEEEES
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhc-cceEEEec
Confidence            3579999999999999999998886 56655543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.78  E-value=0.27  Score=38.85  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=25.0

Q ss_pred             CCccEEEecCCCccCHHHHHHHHhCCCcEEEec
Q 019445           95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVIS  127 (341)
Q Consensus        95 ~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~lS  127 (341)
                      .++|+||+|+|...+.+.+...++.|-..+.+.
T Consensus        97 ~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          97 GGVDYSFECIGNVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCcEeeecCCCHHHHHHHHHhhcCCceeEEEE
Confidence            479999999998877777777777666555443

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.73  E-value=0.19  Score=42.34  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=27.2

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      |.||-|.|+ |++|+.+++.|.+.. .++.++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R   35 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVR   35 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEEC
Confidence            479999999 999999999998875 57777753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.62  E-value=0.49  Score=35.19  Aligned_cols=31  Identities=26%  Similarity=0.267  Sum_probs=25.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ..||.|+|+|++|-|++..|.+.. .++.-+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g-~~Vtlv~   52 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLG-IDSYIFA   52 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTT-CEEEEEC
T ss_pred             CCEEEEECCchHHHHHHHHHHhcc-ccceeee
Confidence            468999999999999999998764 5555554

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.47  E-value=0.4  Score=35.39  Aligned_cols=31  Identities=13%  Similarity=0.111  Sum_probs=25.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +.||.|+|+|++|-|++..+.+.. .++.-+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G-~~Vtlve   52 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFG-TKVTILE   52 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCeEEEECCCccceeeeeeecccc-cEEEEEE
Confidence            468999999999999999998875 5555453

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=86.40  E-value=0.26  Score=38.23  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=26.2

Q ss_pred             eeEEEEccCHHHHHHHHHHHcC-CCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQR-DDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~-p~~elv~i~   37 (341)
                      .||.|+|+|++|.+++..|.++ ++++|+-|.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie   34 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIE   34 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEE
Confidence            4899999999999999988764 568887774

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.24  E-value=1.6  Score=37.83  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=29.3

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .+|+|=|||.+|..+++.|.+.. ..|++|.|.
T Consensus        37 ktvaIqGfGnVG~~~A~~L~e~G-akvv~vsD~   68 (293)
T d1hwxa1          37 KTFAVQGFGNVGLHSMRYLHRFG-AKCVAVGES   68 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEEET
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEEcc
Confidence            58999999999999999999886 899999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.81  E-value=0.48  Score=35.23  Aligned_cols=31  Identities=26%  Similarity=0.332  Sum_probs=25.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +.|+.|+|+|+||.|++..+.+.. .++.-+.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G-~~Vtiv~   52 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLG-AEVTVLE   52 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CCeEEEECCChHHHHHHHHHHHcC-CceEEEE
Confidence            468999999999999999998764 4555554

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.32  Score=41.80  Aligned_cols=28  Identities=43%  Similarity=0.598  Sum_probs=24.4

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEE
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVEL   33 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~el   33 (341)
                      +.||-|.|+ |++|+.|++.|+++++..+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi   30 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVEL   30 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEE
Confidence            469999999 9999999999999876544

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.66  E-value=0.4  Score=35.94  Aligned_cols=31  Identities=23%  Similarity=0.226  Sum_probs=25.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +.|+.|+|+|+||.|++..|.+.. .++.-+.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG-~~Vtii~   53 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLG-SKVTVVE   53 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHhhC-cceeEEE
Confidence            469999999999999999998765 5554443

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.35  Score=42.32  Aligned_cols=30  Identities=20%  Similarity=0.378  Sum_probs=26.0

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      |||-|.|+ |++|+.|++.|++.. .+++.+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g-~~V~~~d   31 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEE
Confidence            47999999 999999999999886 6777764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=84.76  E-value=0.25  Score=40.08  Aligned_cols=31  Identities=16%  Similarity=0.271  Sum_probs=24.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||||+|+|.+|+.++..++++. ++++ +.|.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G-~~V~-l~D~   35 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKG-TPIL-MKDI   35 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC-CeEE-EEEC
Confidence            47999999999999998888875 5554 4454

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.65  E-value=1.8  Score=36.41  Aligned_cols=33  Identities=30%  Similarity=0.544  Sum_probs=28.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||+|-|||.+|..++|.|.+.-...++++.|.
T Consensus        33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCcceeecccc
Confidence            689999999999999999876545889999886

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=84.33  E-value=0.34  Score=42.51  Aligned_cols=32  Identities=31%  Similarity=0.311  Sum_probs=27.6

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRDDVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~   38 (341)
                      +.+|.|.|+ |++|+.+++.|+++. .+++++.-
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R   35 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVH   35 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCC-CeEEEEEC
Confidence            468999999 999999999999886 67777764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.24  E-value=0.38  Score=36.10  Aligned_cols=29  Identities=17%  Similarity=0.033  Sum_probs=23.9

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCC-CcEEE
Q 019445            6 KIKIGINGFGRIGRLVARVALQRD-DVELV   34 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p-~~elv   34 (341)
                      +-|+.|+|+|+||-|++..+.+.. ++.|+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii   49 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVM   49 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEE
Confidence            458999999999999999998764 35554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.01  E-value=0.12  Score=40.94  Aligned_cols=30  Identities=17%  Similarity=0.410  Sum_probs=23.7

Q ss_pred             eEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            8 KIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         8 rV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +|.|+|+ |-+|...++++..+...+++.+.
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~   60 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVD   60 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             EEEEEeccccceeeeeecccccccccccccc
Confidence            7999998 99999999988877644554443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.61  E-value=0.4  Score=37.13  Aligned_cols=27  Identities=30%  Similarity=0.276  Sum_probs=21.9

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      ||.|+|+|++|-|+++.|.+.  .++.-+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~~--~~Vtvv   28 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQT--YEVTVI   28 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT--SEEEEE
T ss_pred             eEEEECCcHHHHHHHHHHHcC--CCEEEE
Confidence            899999999999999998653  455444

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=83.58  E-value=0.4  Score=38.16  Aligned_cols=31  Identities=10%  Similarity=0.128  Sum_probs=25.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      -+|||+|.|.+|..+++.|.++. +++. +.|+
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G-~~V~-v~dr   33 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHG-FVVC-AFNR   33 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCEE-EECS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCC-CeEE-EEcC
Confidence            47999999999999999999875 5654 4454

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.00  E-value=0.3  Score=38.64  Aligned_cols=32  Identities=13%  Similarity=0.189  Sum_probs=23.7

Q ss_pred             CCccEEEecCCCccCHHHHHHHHhCCCcEEEe
Q 019445           95 TGAEYVVESTGVFTDKDKAAAHLKGGAKKVVI  126 (341)
Q Consensus        95 ~~~DvV~~at~~~~s~~~~~~~l~~G~k~V~l  126 (341)
                      .++|+||+|+|...+.+.+-..++.|-+.+.+
T Consensus        99 ~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2          99 RGVNVAMDFVGSQATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             CCEEEEEESSCCHHHHHHGGGGEEEEEEEEEC
T ss_pred             CCceEEEEecCcchHHHHHHHHHhCCCEEEEE
Confidence            37999999999877777666666666655544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=82.94  E-value=0.36  Score=38.50  Aligned_cols=31  Identities=13%  Similarity=0.205  Sum_probs=23.2

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      +|.|.|+|-+|...+.++..+..-+++.+ |.
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~-d~   60 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGV-GT   60 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEE-CS
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeecc-CC
Confidence            69999999999999988876653344444 44

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.65  E-value=0.69  Score=40.25  Aligned_cols=33  Identities=24%  Similarity=0.277  Sum_probs=25.0

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCC-cEEEEeeC
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDD-VELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~-~elv~i~~   38 (341)
                      |.||+|+|+|..|...++.|++... .+++.+..
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk   37 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFER   37 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEEC
Confidence            4689999999999999888876542 46655543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.65  E-value=0.64  Score=34.72  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=23.9

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .||.|+|+|++|.|++..|.+.. .++.-|
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g-~~Vtli   59 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAG-KKVTVI   59 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEECChHHHHHHHHHhhccc-eEEEEE
Confidence            58999999999999999998774 555444

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.53  E-value=0.65  Score=34.76  Aligned_cols=31  Identities=16%  Similarity=-0.007  Sum_probs=24.8

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      +.||.|+|+|++|-|++..+.+.. .++.-+.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G-~~Vtlv~   52 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALG-SKTSLMI   52 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCC-cEEEEEe
Confidence            358999999999999999988764 5554443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.31  E-value=0.49  Score=41.29  Aligned_cols=30  Identities=23%  Similarity=0.225  Sum_probs=25.3

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .||-|-|+ |+||..|++.|++.. -+++++.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAG-YLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTT-CCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCc-CEEEEEE
Confidence            48999999 999999999998875 4676763

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=0.69  Score=34.11  Aligned_cols=30  Identities=17%  Similarity=0.152  Sum_probs=24.2

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +.||.|+|+|++|.|++..|.+.. .++.-+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G-~~Vtlv   50 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLG-AKTHLF   50 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CCEEEEECCChhhHHHHHHhhccc-cEEEEE
Confidence            468999999999999999998765 454444

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.22  E-value=0.51  Score=37.27  Aligned_cols=32  Identities=13%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      -+|.|+|+ |-+|...++++.... .+++++.+.
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~   62 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYG-LKILGTAGT   62 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred             CEEEEEeccccccccccccccccC-ccccccccc
Confidence            37999998 999999999887775 788777653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=81.99  E-value=0.7  Score=34.47  Aligned_cols=30  Identities=30%  Similarity=0.265  Sum_probs=24.4

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .||.|+|+|++|-|++..|.+.. .++.-|.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g-~~Vtli~   60 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAG-VHVSLVE   60 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEE
T ss_pred             CeEEEECcchhHHHHHHHhhccc-ceEEEEe
Confidence            58999999999999999998764 5555443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.23  E-value=1.2  Score=35.88  Aligned_cols=29  Identities=17%  Similarity=0.178  Sum_probs=21.7

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      +|.|.|+|.+|...+.++....--.++.+
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~   56 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVG   56 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeee
Confidence            79999999999888887766553344444

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=81.13  E-value=0.51  Score=41.26  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=26.9

Q ss_pred             ceeEEEEcc-CHHHHHHHHHHHcCC-CcEEEEeeC
Q 019445            6 KIKIGINGF-GRIGRLVARVALQRD-DVELVAVND   38 (341)
Q Consensus         6 ~irV~I~G~-G~iG~~llr~l~~~p-~~elv~i~~   38 (341)
                      |+||-|.|+ |+||..|++.|+++. ++.++.+..
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            468999999 999999999998764 577777643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=80.91  E-value=0.79  Score=34.72  Aligned_cols=31  Identities=23%  Similarity=0.346  Sum_probs=25.1

Q ss_pred             ceeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            6 KIKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         6 ~irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      ..||.|+|+|++|-|++..|.+.. .++.-|.
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g-~~Vtvie   65 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKAN-MHVTLLD   65 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCEEEEECCchHHHHHHHHHHhhC-cceeeee
Confidence            358999999999999999998775 5655554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.84  E-value=0.76  Score=34.15  Aligned_cols=29  Identities=21%  Similarity=0.049  Sum_probs=23.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEe
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAV   36 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i   36 (341)
                      .+|.|+|+|++|-|++..|.+.. .++.-|
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g-~~Vtlv   61 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAG-YHVKLI   61 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTT-CEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHhhccc-ceEEEE
Confidence            58999999999999999998775 455444

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=80.58  E-value=0.94  Score=38.24  Aligned_cols=32  Identities=28%  Similarity=0.459  Sum_probs=29.6

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      .||+|-|||.+|..++|.|.++. ..+++|.|.
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~G-akvv~vsD~   63 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKMG-AKVIAVSDI   63 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTT-CEEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEeecc
Confidence            68999999999999999999986 899999876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.37  E-value=1.8  Score=34.19  Aligned_cols=30  Identities=13%  Similarity=0.244  Sum_probs=24.5

Q ss_pred             eEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            8 KIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         8 rV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .|.|.|+|-+|...+.++....--+|+++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd   61 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGID   61 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEec
Confidence            599999999999999998877645666664

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.24  E-value=1.1  Score=32.75  Aligned_cols=30  Identities=7%  Similarity=-0.112  Sum_probs=23.8

Q ss_pred             eeEEEEccCHHHHHHHHHHHcCCCcEEEEee
Q 019445            7 IKIGINGFGRIGRLVARVALQRDDVELVAVN   37 (341)
Q Consensus         7 irV~I~G~G~iG~~llr~l~~~p~~elv~i~   37 (341)
                      .+|+|+|+|++|-|++..|.... .++.-+.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g-~~vt~i~   52 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATG-RRTVMLV   52 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcc-hhheEee
Confidence            58999999999999999988764 4444443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.10  E-value=0.43  Score=37.83  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=26.3

Q ss_pred             eeEEEEcc-CHHHHHHHHHHHcCCCcEEEEeeCC
Q 019445            7 IKIGINGF-GRIGRLVARVALQRDDVELVAVNDP   39 (341)
Q Consensus         7 irV~I~G~-G~iG~~llr~l~~~p~~elv~i~~~   39 (341)
                      -+|.|.|+ |-+|...++++.... .+++++.+.
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~   61 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMG-LRVLAAASR   61 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESS
T ss_pred             CEEEEEeccccchhhhhhhhcccc-ccccccccc
Confidence            37999998 999999999888776 687777653