Citrus Sinensis ID: 019446

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MLRSMHQNKSSNSSGPEANSNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGGADATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCSNGNGQTYYEGNGNGCYSHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHRALTIK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHHHHHHHHHHHccccccccEcccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEEccccccEEEEEc
Coil and Loop (DISEMBL)
mlrsmhqnkssnssgpeansnnsftissqpwwrgvghdstsRAMLQggignissprepingVLVAKTSksqvnsgmdggaDATKEMLMSVAsqadgkfggqqpsqhsvslmhpqfseyltqpsqlelvghsivhpqsmgvhsarmalplemaeepvyvnaKQYHGILRRRQLRAKAELERKLIKVrkpylhesrHLHAMRRArgcggrfvntkkldsqtsngtvtngtSLNVAvstlppnssksesvatnysrgtadlstgcrevtepqvhkmqqqqrcsngngqtyyegngngcyshhqgfqlfkchslpdnkveegdfsgqqsgRIVENRAQHRALTIK
Flexible Loop (DISEMBL)
mlrsmhqnkssnssgpeansnnSFTISSQPWWRGVGHDSTSRAMLQGGIgnissprepINGVLVAktsksqvnsGMDGGADATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLikvrkpylhesrhlhamrrargcggrfvntkkldsqtsngtvtngtslnvavstlppnssksesvatnysrGTADLSTGCREVTEPQVHKMQQQQRCSNGNGQTYYEGNGNGCYSHHQGFQLFKCHSLPDNKVEEgdfsgqqsgrivenraqhraltik
Low Complexity Region (SEG)
MLRSMHQNKSSNSSGPEANSNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGGADATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCSNGNGQTYYEGNGNGCYSHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHRALTIK
Disordered region (IsUnstruct)
******************************WWRGV******************************************************************************************ELVGHSIVHP***GVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVN**************************************************************************TYYEGNGNGCYSHHQGFQLFKCHSL*******************************
Disordered Region (DISOPRED)
******************************WWR***********************************************************************************************************************EEPVYVNAKQYHGILRRRQLR************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********************NSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGGADATKEMLMSVASQA*************VSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTL*************YSRGTADLSTGCREV***************NGNGQTYYEGNGNGCYSHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHRALTIK
Disordered Region (DISPRO)
***********************************************************************************************GKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRAR*C**RFV*********************************************************************************GNGCYSHHQGFQLFKCHSL**********************AQHRAL*IK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRSMHQNKSSNSSGPEANSNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGGADATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCSNGNGQTYYEGNGNGCYSHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHRALTIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q9LXV5	272	Nuclear transcription fac	yes	no	0.618	0.775	0.392	2e-29
Q84JP1	190	Nuclear transcription fac	no	no	0.307	0.552	0.571	4e-28
Q9LVJ7	308	Nuclear transcription fac	no	no	0.316	0.350	0.552	6e-28
Q945M9	303	Nuclear transcription fac	no	no	0.266	0.300	0.639	1e-27
Q9SYH4	308	Nuclear transcription fac	no	no	0.290	0.321	0.556	5e-27
Q9LNP6	328	Nuclear transcription fac	no	no	0.296	0.307	0.496	3e-25
Q93ZH2	340	Nuclear transcription fac	no	no	0.237	0.238	0.634	4e-25
Q8LFU0	269	Nuclear transcription fac	no	no	0.495	0.628	0.368	3e-24
Q8VY64	198	Nuclear transcription fac	no	no	0.231	0.398	0.645	4e-24
Q9M9X4	295	Nuclear transcription fac	no	no	0.369	0.427	0.456	2e-20

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 128/252 (50%), Gaps = 41/252 (16%)

Query: 26  ISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGGADAT-K 84
           + ++PWW+        +A   G   N SS   P NG        +  +  ++G  D T K
Sbjct: 24  MYAEPWWKNNSFGVVPQARPSGIPSNSSSLDCP-NGSESNDVHSASEDGALNGENDGTWK 82

Query: 85  EMLMSVASQADGKFG--GQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIV--------- 133
           +   + +S++    G  G  P+  S+  MH Q    L QP   ELVGH I          
Sbjct: 83  DSQAATSSRSVDNHGMEGNDPAL-SIRNMHDQP---LVQPP--ELVGHYIACVPNPYQDP 136

Query: 134 ----------HPQ-----SMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAEL 178
                     H Q      +G+   R ALPL+MA+EPVYVNAKQY GILRRR+ RAKAEL
Sbjct: 137 YYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAEL 196

Query: 179 ERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTLP 238
           ERK+I+ RKPYLHESRH HAMRRAR  GGRF    ++++    G    G       +T  
Sbjct: 197 ERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEA----GEDAGGRDRERGSAT-- 250

Query: 239 PNSSKSESVATN 250
            NSS SE V T+
Sbjct: 251 -NSSGSEQVETD 261

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 74/105 (70%)

Query: 133 VHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHE 192
           VH Q MGV    + LP +  EEPV+VNAKQYHGILRRRQ RA+ E + K+IK RKPYLHE
Sbjct: 79  VHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHE 138

Query: 193 SRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTL 237
           SRHLHA+RR RGCGGRF+N KK D    + +    ++L+   S +
Sbjct: 139 SRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAM 183

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  125 bits (313), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 82/114 (71%), Gaps = 6/114 (5%)

Query: 113 PQFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAE-EPVYVNAKQYHGILRRRQ 171
           P F+ +L+ P   +   H++ HPQ  G+  +RM LP  + E EP++VNAKQY  ILRRR+
Sbjct: 132 PHFNGFLSFPYASQ---HTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRE 188

Query: 172 LRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVT 225
            RAK E + KLIKVRKPYLHESRHLHA++R RG GGRF+NTKK   Q SN +++
Sbjct: 189 RRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK--HQESNSSLS 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 70/97 (72%), Gaps = 6/97 (6%)

Query: 139 GVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHA 198
           G+  +RM LP EMA+EPV+VNAKQY  ILRRRQ RAKAELE+KLIK RKPYLHESRH HA
Sbjct: 151 GMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHA 210

Query: 199 MRRARGCGGRFVN------TKKLDSQTSNGTVTNGTS 229
           MRR RG GGRF        +K+   + SNG VT   S
Sbjct: 211 MRRPRGTGGRFAKKTNTEASKRKAEEKSNGHVTQSPS 247

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  122 bits (305), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 79/115 (68%), Gaps = 16/115 (13%)

Query: 117 EYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAE-EPVYVNAKQYHGILRRRQLRAK 175
           EY + P+ L        H + MG+ S+R+ LP  + E EP++VNAKQYH ILRRR+ RAK
Sbjct: 147 EYASTPTALP-------HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAK 199

Query: 176 AELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKL--------DSQTSNG 222
            E + KLIK RKPYLHESRHLHA++RARG GGRF+NTKKL         SQ +NG
Sbjct: 200 LEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANG 254

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  115 bits (289), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/127 (49%), Positives = 77/127 (60%), Gaps = 26/127 (20%)

Query: 94  ADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAE 153
           AD  FGG  P+             YL Q +        I +PQ       R+ LP ++ E
Sbjct: 136 ADPHFGGLMPA------------AYLPQAT--------IWNPQM-----TRVPLPFDLIE 170

Query: 154 -EPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNT 212
            EPV+VNAKQ+H I+RRRQ RAK E + KLIK RKPYLHESRH+HA++R RG GGRF+NT
Sbjct: 171 NEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNT 230

Query: 213 KKLDSQT 219
           KKL   T
Sbjct: 231 KKLQEST 237

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  115 bits (289), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 65/82 (79%), Gaps = 1/82 (1%)

Query: 135 PQSMGVHSARMALPLEMAE-EPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHES 193
           PQ + +   R+ LP E+ E +PV+VNAKQYH I+RRRQ RAK E + KLI+ RKPYLHES
Sbjct: 159 PQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHES 218

Query: 194 RHLHAMRRARGCGGRFVNTKKL 215
           RH+HA++R RG GGRF+NTKKL
Sbjct: 219 RHVHALKRPRGSGGRFLNTKKL 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 99/201 (49%), Gaps = 32/201 (15%)

Query: 30  PWWRGVGHDSTSRAMLQG-------GIGNISSPREPINGVLVAKTSKSQVN---SGMDGG 79
           PWW   G    +   L G       G+  +++  E   GV+  +TS +       G    
Sbjct: 13  PWWNAFGSQPLTTESLSGEASDSFTGVKAVTTEAE--QGVVDKQTSTTLFTFSPGGEKSS 70

Query: 80  ADATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMG 139
            D  K  +      A  +FG  QP  ++    HP   +Y           + +V      
Sbjct: 71  RDVPKPHVAFAMQSACFEFGFAQPMMYT---KHPHVEQY-----------YGVVSAYGSQ 116

Query: 140 VHSARMALPLEMAEE---PVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHL 196
             S R+ +PL+M  E    +YVN+KQYHGI+RRRQ RAKAE   KL + RKPY+H SRHL
Sbjct: 117 RSSGRVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHL 173

Query: 197 HAMRRARGCGGRFVNTKKLDS 217
           HAMRR RG GGRF+NTK  D+
Sbjct: 174 HAMRRPRGSGGRFLNTKTADA 194

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 60/79 (75%)

Query: 136 QSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRH 195
           Q MG+    + L  +  EEPV+VNAKQYHGILRRRQ RAK E   + IK +KPY+HESRH
Sbjct: 80  QLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRH 139

Query: 196 LHAMRRARGCGGRFVNTKK 214
           LHA+RR RGCGGRF+N KK
Sbjct: 140 LHAIRRPRGCGGRFLNAKK 158

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/138 (45%), Positives = 81/138 (58%), Gaps = 12/138 (8%)

Query: 136 QSMGVHSA-----RMALPLEMAEEP--VYVNAKQYHGILRRRQLRAKAE--LERKLI--K 184
           Q  GV SA     R+ LPL M  E   +YVN+KQYHGI+RRRQ RAKA   L++K +  +
Sbjct: 111 QYYGVVSAYGSQSRVMLPLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSR 170

Query: 185 VRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGT-SLNVAVSTLPPNSSK 243
            RKPY+H SRHLHA+RR RG GGRF+NTK  + + S      G  S+ +     P  S+ 
Sbjct: 171 CRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGSMQIQSQPKPQQSNS 230

Query: 244 SESVATNYSRGTADLSTG 261
             S   +   GT +LS G
Sbjct: 231 QNSEVVHPENGTMNLSNG 248

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
297739684	354	unnamed protein product [Vitis vinifera]	0.956	0.920	0.515	2e-81
225450115	346	PREDICTED: nuclear transcription factor	0.897	0.884	0.458	8e-58
297736254	405	unnamed protein product [Vitis vinifera]	0.897	0.755	0.458	2e-57
224090254	223	predicted protein [Populus trichocarpa]	0.598	0.914	0.560	3e-54
7141243	215	transcription factor [Vitis riparia]	0.498	0.790	0.633	2e-49
224104075	376	predicted protein [Populus trichocarpa]	0.888	0.805	0.390	1e-48
343157308	377	CCAAT-binding transcription factor subun	0.574	0.519	0.495	6e-48
255553570	336	Nuclear transcription factor Y subunit A	0.756	0.767	0.429	9e-48
359478376	345	PREDICTED: nuclear transcription factor	0.832	0.823	0.413	5e-47
255544876	350	Nuclear transcription factor Y subunit A	0.885	0.862	0.397	3e-46

>gi|297739684|emb|CBI29866.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 188/365 (51%), Positives = 232/365 (63%), Gaps = 39/365 (10%)

Query: 5   MH-QNKSSNSSGPEANSNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGV- 62
           MH Q +  N    +A+SNN ++I SQPWWRG+G+D  S  +L     N +S   P  GV 
Sbjct: 1   MHKQTERKNQPESKADSNNPYSICSQPWWRGLGNDVISPDVLGESSPNSASAEHPNGGVG 60

Query: 63  LVAKTSKSQVNSGMDGGADATKEMLMSVASQADGKFGGQQP-SQHSVSLMHPQFSEY-LT 120
            +A  S+++V +  D G D  KEM +++ASQ+DG  G +Q   Q +VS+M    +EY L 
Sbjct: 61  TIAIKSRAKVVT--DNGNDPEKEMKITLASQSDGSCGQEQKHPQQAVSMMPMTMAEYHLA 118

Query: 121 QPSQLELVGHSI------------------------VHPQSMGVHSARMALPLEMAEEPV 156
            PSQLELVGHSI                        V  Q +GV+ ARMALP+EMAEEPV
Sbjct: 119 PPSQLELVGHSIACASYPYSEPYYTGVIPAYGPQGLVQSQFLGVNVARMALPIEMAEEPV 178

Query: 157 YVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLD 216
           YVNAKQYHGILRRRQ RAKAELE+KLIKVRKPYLHESRH HAMRRARGCGGRF+NTKKLD
Sbjct: 179 YVNAKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLD 238

Query: 217 SQTSNGTVTNGTSLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQ 276
           S  S      G+  +V +ST P +SS SES+ +N SR   D  T   +   P V ++  +
Sbjct: 239 SNASYDMPDKGSDPDVNLSTRPISSSVSESLPSNSSR-NEDSPTSHLDARGPSVQELHNR 297

Query: 277 QRCSNGNGQTYYEGNGNGCYSHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHR 336
           Q  S+        GNGN CY H+QGFQL   HSL D++VEEGD +G+Q  RI+ NRA HR
Sbjct: 298 QIASH--------GNGNSCYPHNQGFQLSTYHSLKDDRVEEGDHAGRQHERILVNRAPHR 349

Query: 337 ALTIK 341
           ALTIK
Sbjct: 350 ALTIK 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450115|ref|XP_002278849.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Vitis vinifera]

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 162/353 (45%), Positives = 195/353 (55%), Gaps = 47/353 (13%)

Query: 16  PEANSNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSG 75
           P   SN S T+ SQPWW GVG+++ S A L GG  + S+  E +N  + +   + Q N  
Sbjct: 14  PGGKSNPSSTVYSQPWWHGVGNNAISPAAL-GGSPSKSTSVEHLNSHITSNGFQLQANGR 72

Query: 76  MDGGADATKEMLMSVASQADGKFGGQQPSQH---SVSLMHPQFSEYLTQPSQLELVGHSI 132
           +D G    K    +VA Q+DG+ G  Q  QH   + S   P  SE+L   SQ+ELVGHSI
Sbjct: 73  LDDGTTFNKGTQPTVALQSDGRNG--QEHQHLNPTASSTLPIMSEHLEPNSQMELVGHSI 130

Query: 133 V------------------------HPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILR 168
           V                        HP   G+H  RM LPLEM EEPVYVNAKQYHGILR
Sbjct: 131 VLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPVYVNAKQYHGILR 190

Query: 169 RRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGT 228
           RRQ RAKAELE+K IKVRKPYLHESRH HAMRRARGCGGRF+NTKKLD+  +N T   G+
Sbjct: 191 RRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGS 250

Query: 229 SLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCSNGNGQTYY 288
               A+ST   +SS SE + TN SR   D S+  +E     +  M +    SNGN     
Sbjct: 251 VSGAALSTQSASSSGSEHLPTNSSR-NLDSSSVQQEEKGRTIQDMLEAHTYSNGN----- 304

Query: 289 EGNGNGCYSHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHRALTIK 341
             NG+G  S +        HS   N  E GD  GQ    +  N A HRAL IK
Sbjct: 305 -RNGHGLSSAY--------HS--SNGSEGGDCFGQPRENMQLNTAPHRALPIK 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736254|emb|CBI24892.3| unnamed protein product [Vitis vinifera]

 Score =  229 bits (583), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 162/353 (45%), Positives = 195/353 (55%), Gaps = 47/353 (13%)

Query: 16  PEANSNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSG 75
           P   SN S T+ SQPWW GVG+++ S A L GG  + S+  E +N  + +   + Q N  
Sbjct: 73  PGGKSNPSSTVYSQPWWHGVGNNAISPAAL-GGSPSKSTSVEHLNSHITSNGFQLQANGR 131

Query: 76  MDGGADATKEMLMSVASQADGKFGGQQPSQH---SVSLMHPQFSEYLTQPSQLELVGHSI 132
           +D G    K    +VA Q+DG+ G  Q  QH   + S   P  SE+L   SQ+ELVGHSI
Sbjct: 132 LDDGTTFNKGTQPTVALQSDGRNG--QEHQHLNPTASSTLPIMSEHLEPNSQMELVGHSI 189

Query: 133 V------------------------HPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILR 168
           V                        HP   G+H  RM LPLEM EEPVYVNAKQYHGILR
Sbjct: 190 VLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPVYVNAKQYHGILR 249

Query: 169 RRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGT 228
           RRQ RAKAELE+K IKVRKPYLHESRH HAMRRARGCGGRF+NTKKLD+  +N T   G+
Sbjct: 250 RRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGS 309

Query: 229 SLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCSNGNGQTYY 288
               A+ST   +SS SE + TN SR   D S+  +E     +  M +    SNGN     
Sbjct: 310 VSGAALSTQSASSSGSEHLPTNSSR-NLDSSSVQQEEKGRTIQDMLEAHTYSNGN----- 363

Query: 289 EGNGNGCYSHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHRALTIK 341
             NG+G  S +        HS   N  E GD  GQ    +  N A HRAL IK
Sbjct: 364 -RNGHGLSSAY--------HS--SNGSEGGDCFGQPRENMQLNTAPHRALPIK 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090254|ref|XP_002308961.1| predicted protein [Populus trichocarpa] gi|222854937|gb|EEE92484.1| predicted protein [Populus trichocarpa]

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/207 (56%), Positives = 136/207 (65%), Gaps = 3/207 (1%)

Query: 20  SNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGG 79
           +N   +  S+PWW   GH +    +L     N+S  +E  +  L  K SK   N  MDGG
Sbjct: 11  TNYPLSSPSKPWWCSAGHHAIFSNVLGESTKNLSL-QESTDDGLGTKASKPHGNVQMDGG 69

Query: 80  ADATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMG 139
             A KE  ++  S +DGK+G     Q + S+M P    YL   +QLEL GHSIVH Q  G
Sbjct: 70  TVAYKEKQLNAVSASDGKYGDHHHPQQAASIMIPAMGVYLGPSTQLELAGHSIVHSQYAG 129

Query: 140 VHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAM 199
            + +RM LP EMAEEPVYVNAKQYHGILRRRQ RAKAELERKLIK RKPYLHESRHLHAM
Sbjct: 130 PNPSRMVLPHEMAEEPVYVNAKQYHGILRRRQSRAKAELERKLIKTRKPYLHESRHLHAM 189

Query: 200 RRARGCGGRFVNTKKLDSQTSNGTVTN 226
           RRARGCGGRF+NTKK D  T+N T  +
Sbjct: 190 RRARGCGGRFLNTKKPD--TTNNTAPD 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7141243|gb|AAF37266.1|AF220405_1 transcription factor [Vitis riparia]

 Score =  202 bits (513), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 125/172 (72%), Gaps = 2/172 (1%)

Query: 110 LMHPQFSEY-LTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILR 168
           +M    +EY L  PSQLELVGHSIV  Q +GV+ ARMALP+EMAEEPVYVNAKQYHGILR
Sbjct: 1   MMPMTMAEYHLAPPSQLELVGHSIVQSQFLGVNVARMALPIEMAEEPVYVNAKQYHGILR 60

Query: 169 RRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGT 228
           RRQ RAKAELE+KLIKVRKPYLHESRH HAMRRARGCGGRF+NTKKLDS  S      G+
Sbjct: 61  RRQSRAKAELEKKLIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDSNASYDMPDKGS 120

Query: 229 SLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCS 280
             +V +ST P +SS SES+  N SR   D  T   +   P V ++  +Q  S
Sbjct: 121 DPDVNLSTRPISSSVSESLPFNSSRNE-DSPTSHLDARGPSVQELHNRQTSS 171

Source: Vitis riparia

Species: Vitis riparia

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104075|ref|XP_002313307.1| predicted protein [Populus trichocarpa] gi|222849715|gb|EEE87262.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/361 (39%), Positives = 184/361 (50%), Gaps = 58/361 (16%)

Query: 3   RSMHQNKSSNSSGPEANSNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGV 62
           +S  +++  + SGP     N   I SQPWWR VG+ S+      G   +  S  E +NG 
Sbjct: 4   KSEKEDRRLDHSGPSPFQTN---IYSQPWWRDVGNSSS-----LGDTASKLSSVEHLNGS 55

Query: 63  LVAKTSKSQVNSGMDGGADATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQP 122
           L     +SQVN+G+  GA   K+M   V SQ+D     +   +H  S        +L   
Sbjct: 56  LANAAIQSQVNTGLQKGAMVNKDMQTDVTSQSDESNEQEHHLKHIPSPTTVTMGGHLEPN 115

Query: 123 SQLELVGHSIVH-----------------------PQSMGVHSARMALPLEMAEEPVYVN 159
           SQ+ELVGHSIV                        PQ  G+  ARM LPLEM EEPVYVN
Sbjct: 116 SQMELVGHSIVLTSHPYTDPQYGGMFASYGAQAMVPQLYGMPHARMPLPLEMEEEPVYVN 175

Query: 160 AKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQT 219
           AKQ+HGI+RRRQ RAKAELE+K +KVRKPYLHESRH HA+RRARGCGGRF+NTKKLD+  
Sbjct: 176 AKQFHGIMRRRQARAKAELEKKAVKVRKPYLHESRHQHALRRARGCGGRFLNTKKLDNSA 235

Query: 220 SNGTVTNGTSLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRC 279
           +N T   G +    +S    + S SE   T    G+ DL++         + + +  Q  
Sbjct: 236 TNPTSEKGINSVANISKQSYSFSVSECFPT---EGSGDLNSSG------DLEEGKGSQAS 286

Query: 280 SNGNGQTYYEGNGNGCYSHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHRALT 339
           SNG+      GNG+   S +             +   +G F GQQ      NR +  AL 
Sbjct: 287 SNGH------GNGHALSSRYH------------SSSHDGSFLGQQKETTHGNREKLEALA 328

Query: 340 I 340
           +
Sbjct: 329 M 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343157308|gb|AEL95437.1| CCAAT-binding transcription factor subunit B [Populus euphratica]

 Score =  197 bits (501), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 113/228 (49%), Positives = 135/228 (59%), Gaps = 32/228 (14%)

Query: 26  ISSQPWWRGVGHDST--SRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGGADAT 83
           I SQPWWR VG+  +    A     +GN+       NG L     +SQVN+G+  GA   
Sbjct: 24  IYSQPWWRDVGNSPSLGDTASKLSSVGNL-------NGSLANAAIQSQVNTGLQKGAMVN 76

Query: 84  KEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVH--------- 134
           K+M   V SQ+D   G +   +H  S        +L   SQ+ELVGHSIV          
Sbjct: 77  KDMQTDVTSQSDESNGQEHHLKHIPSPTTVTMGGHLEPNSQMELVGHSIVLTSHPYTDPQ 136

Query: 135 --------------PQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELER 180
                         PQ  G+  ARM LPLEM EEPVYVNAKQ+HGI+RRRQ RAKAELE+
Sbjct: 137 HGGMFASYGAQAMVPQLYGMPQARMPLPLEMEEEPVYVNAKQFHGIMRRRQARAKAELEK 196

Query: 181 KLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGT 228
           K +KVRKPYLHESRH HAMRRARGCGGRF+NTKKLD+ T+N T   G+
Sbjct: 197 KAVKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDNNTTNPTSEKGS 244

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553570|ref|XP_002517826.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223543098|gb|EEF44633.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  196 bits (499), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 131/305 (42%), Positives = 168/305 (55%), Gaps = 47/305 (15%)

Query: 25  TISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGGADATK 84
           +I SQPWWRGVG+ ST            SS  + +NG L     +SQ N  +D GA++ K
Sbjct: 20  SIYSQPWWRGVGNSSTFEESTS-----KSSSSDHLNGSLSNGPIRSQANLTLDNGANSNK 74

Query: 85  EMLMSVASQADGKFG-----GQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIV------ 133
           +  ++V+SQ+DG  G      Q PS   V+++      ++   SQ+ELVGHSIV      
Sbjct: 75  DTQVAVSSQSDGINGQGHHLKQVPSSAPVTMV-----GHVEPNSQMELVGHSIVLTSYPY 129

Query: 134 ------------------HPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAK 175
                              PQ  G+H ARMALPLEM EEPVYVNAKQ++GILRRRQ RAK
Sbjct: 130 SDAQYGGMLPSYAPQAMVTPQLYGMHHARMALPLEMEEEPVYVNAKQFNGILRRRQARAK 189

Query: 176 AELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVS 235
           AE+E+K IK RKPYLHESRH HAMRRARGCGGRF+++KK +S T N    N  +  +  S
Sbjct: 190 AEIEKKAIKARKPYLHESRHQHAMRRARGCGGRFLSSKKPESNTKNPASDNDVNSCINAS 249

Query: 236 TLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRC-SNGNGQ----TYYEG 290
           T     + SE +  N   GT +L +   E      H MQ       NGNG      Y+  
Sbjct: 250 TRSAILTGSEWLQKN---GTRNLDSANGEGKGSTDHDMQSHSSSHGNGNGHGLSSIYHPS 306

Query: 291 NGNGC 295
           +G+G 
Sbjct: 307 SGDGL 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478376|ref|XP_002282778.2| PREDICTED: nuclear transcription factor Y subunit A-1 [Vitis vinifera]

 Score =  194 bits (493), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 177/319 (55%), Gaps = 35/319 (10%)

Query: 11  SNSSGPE----ANSNNSFTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAK 66
           SNS GP      ++    ++ S+PWWRGVG++  S  M  G   N  S   P NG   + 
Sbjct: 3   SNSKGPNQIGPPHTAPPSSVYSEPWWRGVGYNPISTTMTGGNTNNSPSSECP-NGGSESN 61

Query: 67  TSKSQVNSGM-DGGADATKEMLMSVASQADGKFGGQ-QPSQHSVSLMHPQFSEYLTQPSQ 124
             +S  N G+ +   D+ KE   + +SQ++G +G + Q  QH    +    SE LTQP Q
Sbjct: 62  DGQSHSNGGLNEEDDDSIKESQATASSQSNGNYGQEHQNLQHIAPNIQIGSSECLTQPPQ 121

Query: 125 LELVGHSI------------------------VHPQSMGVHSARMALPLEMAEEPVYVNA 160
           LELVGHSI                        VHP  +G+H ARM LPLEM ++PVYVN 
Sbjct: 122 LELVGHSIACASNPYQDPYYGGMMTAYGPQPLVHPHLLGMHEARMPLPLEMTQDPVYVNP 181

Query: 161 KQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTS 220
           KQYHGILRRRQ RAKAELE+KLIKVRKPYLHESRH HA+RRAR  GGRF      ++ + 
Sbjct: 182 KQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHQHALRRARSSGGRFAKKSAAEA-SK 240

Query: 221 NGTVTNGTSLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCS 280
           + +    T+L  A S    +SS SE + ++ S  T + S+  +E   PQ H   +  +  
Sbjct: 241 HASEEKVTALGSAPSPQSVSSSGSERLPSD-STETWNSSSRQQEARGPQAHDTHEPPKYK 299

Query: 281 NGNGQTYYEGNGNGCYSHH 299
           NG+G  YY+  G+   ++H
Sbjct: 300 NGSG--YYQSPGDSQTTNH 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544876|ref|XP_002513499.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223547407|gb|EEF48902.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 137/345 (39%), Positives = 174/345 (50%), Gaps = 43/345 (12%)

Query: 24  FTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPINGVLVAKTSKSQVNSGMDGGADAT 83
           + + S+PWWR +G+ + SRA+  G   N+SS   P NG L +   +S  N  ++   D  
Sbjct: 22  YAVHSEPWWRTIGYSTVSRALAGGNASNLSSSEGP-NGSL-SNDDQSMSNGRLNEEDDDA 79

Query: 84  KEMLMSVASQADGKFGGQQPS--QHSVSLMHPQFSEYLTQPSQLELVGHSIV-------- 133
            +   + AS      GGQ+    QH    M     E LTQP+QLELVGHSI         
Sbjct: 80  SKESQATASSRSVLNGGQENRNLQHVAPSMTAMRDEGLTQPTQLELVGHSIACASNPYQD 139

Query: 134 ----------------HPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAE 177
                           +P  +G H  RMALP E+A+EPVYVNAKQY GILRRRQ RAKAE
Sbjct: 140 PYYGGMMAPYGHQPLGYP-FLGGHQVRMALPNEIAQEPVYVNAKQYPGILRRRQARAKAE 198

Query: 178 LERKLIKVRKPYLHESRHLHAMRRARGCGGRFV-NTKKLDSQTSNGTVTNGTSLNVAVST 236
            E+KLIKVRKPYLHESRH HAMRRARG GGRF   T   DS+ +     N T    A+ +
Sbjct: 199 HEKKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKTGGDDSKNNKEGTANDTG---AIPS 255

Query: 237 LPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCSNGNGQTYYEGNGNGCY 296
               SS       + S  T +L  G +E+   +V+   + +   NG             Y
Sbjct: 256 SQSGSSSGSEQLPSDSAQTWNLPHGDQELRSARVYDTSEARNHINGGSH----------Y 305

Query: 297 SHHQGFQLFKCHSLPDNKVEEGDFSGQQSGRIVENRAQHRALTIK 341
            +H G Q  K H     K E+ D SGQQ G I  N+   R L I+
Sbjct: 306 QNHSGLQTLKHHPHSGEKGEDEDCSGQQRGSISSNQVSQRPLAIQ 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.771	0.867	0.346	7.1e-29
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.736	0.814	0.342	1.5e-28
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.454	0.815	0.428	1.9e-28
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.624	0.783	0.404	6.4e-28
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.439	0.487	0.452	9.4e-27
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.348	0.601	0.487	2.6e-24
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.586	0.743	0.347	5.3e-24
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.222	0.231	0.662	8.7e-24
TAIR|locus:2078072	295	NF-YA2 ""nuclear factor Y, sub	0.700	0.810	0.326	1.4e-23
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.240	0.240	0.619	1.8e-23

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 103/297 (34%), Positives = 142/297 (47%)

Query:     2 LRSMHQNKSS--NSSGPEANSNNSFTISS-QPWWRGVGHDSTSRAMLQGGIGNISSPREP 58
             +  MH    S  N    E +   S +I+S  PW R     + + ++     G+ SS  + 
Sbjct:     3 IEDMHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAAAACNANSSV---EAGDKSS--KS 57

Query:    59 INGVLVAKTSKSQVNSGMDGGADATKEMLMSVASQADGKFGGQQPSQHSVSLM--HPQF- 115
             I   L +  SKS  N   D   +   ++  S  S  D     Q+   H ++    HPQ  
Sbjct:    58 IALALESNGSKSPSNR--DNTVNKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLV 115

Query:   116 --------SEYLTQPSQLELVGHSIVHPQSM----GVHSARMALPLEMAEEPVYVNAKQY 163
                     S     P    ++G    HP       G+  +RM LP EMA+EPV+VNAKQY
Sbjct:   116 GHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQY 175

Query:   164 HGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGT 223
               ILRRRQ RAKAELE+KLIK RKPYLHESRH HAMRR RG GGRF   KK +++ S   
Sbjct:   176 QAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRFA--KKTNTEASKRK 233

Query:   224 VTNGTSLNVAVSTLPPNSSKSESVATNYSRGTADLSTGCREVTEPQVHKMQQQQRCS 280
                 ++ +V  S  P +S+  +  A N      D  T   +  +   +K +++  CS
Sbjct:   234 AEEKSNGHVTQS--PSSSNSDQGEAWN-----GDYRTPQGDEMQSSAYKRREEGECS 283

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 96/280 (34%), Positives = 143/280 (51%)

Query:    10 SSNSSGPEA-NSNNSFTISSQPWWRG--VGHDSTSRAMLQGG--IGNISSPREPIN---- 60
             +SN  G  +   NN+ +++ +    G  + H  +S     GG     ++S  EP N    
Sbjct:    25 NSNVQGSSSLTDNNTLSLTMEMKQTGFQMQHYDSSSTQSTGGESYSEVASLSEPTNRYGH 84

Query:    61 GVLVAKTSKSQVNSGMDGGADATKEMLM-SVASQADGKFGGQQPSQHSVSLMHPQFSEYL 119
              ++V   S  + N     G+ +  ++   SV    +       P   +V+   P F+ +L
Sbjct:    85 NIVVTHLSGYKENPENPIGSHSISKVSQDSVVLPIEA---ASWPLHGNVT---PHFNGFL 138

Query:   120 TQPSQLELVGHSIVHPQSMGVHSARMALPLEMAE-EPVYVNAKQYHGILRRRQLRAKAEL 178
             + P   +   H++ HPQ  G+  +RM LP  + E EP++VNAKQY  ILRRR+ RAK E 
Sbjct:   139 SFPYASQ---HTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEA 195

Query:   179 ERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTLP 238
             + KLIKVRKPYLHESRHLHA++R RG GGRF+NTKK   Q SN +++    +   V    
Sbjct:   196 QNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK--HQESNSSLSPPFLIPPHVFKNS 253

Query:   239 PNSSKSESVATNYSRG--TADLST-GCREVTEPQVHKMQQ 275
             P   +   +    SRG   + +ST  C ++T       QQ
Sbjct:   254 PGKFRQMDI----SRGGVVSSVSTTSCSDITGNNNDMFQQ 289

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 69/161 (42%), Positives = 92/161 (57%)

Query:    84 KEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGVHSA 143
             + ++ S+     G      P Q+      P +      P Q     ++ VH Q MGV   
Sbjct:    36 ESIVTSLVYSDPGTTNSMAPGQYPYP--DPYYRSIFAPPPQ----PYTGVHLQLMGVQQQ 89

Query:   144 RMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRAR 203
              + LP +  EEPV+VNAKQYHGILRRRQ RA+ E + K+IK RKPYLHESRHLHA+RR R
Sbjct:    90 GVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPR 149

Query:   204 GCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTLPPNSSKS 244
             GCGGRF+N KK D    + +    ++L+   S +  +S  S
Sbjct:   150 GCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGTS 190

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 100/247 (40%), Positives = 129/247 (52%)

Query:    21 NNSFTISSQPWWRGVGHDSTSRAMLQGGIGN-ISSPREP--INGV--------LVAKTSK 69
             NNSF +  Q    G+  +S+S     G   N + S  E   +NG           A +S+
Sbjct:    32 NNSFGVVPQARPSGIPSNSSSLDCPNGSESNDVHSASEDGALNGENDGTWKDSQAATSSR 91

Query:    70 SQVNSGMDGGADATKEMLMSVASQADGKFGGQQPSQ---HSVSLM-HPQFSEYLTQPSQL 125
             S  N GM+G   A     +S+ +  D      QP +   H ++ + +P    Y      +
Sbjct:    92 SVDNHGMEGNDPA-----LSIRNMHDQPL--VQPPELVGHYIACVPNPYQDPYYG--GLM 142

Query:   126 ELVGHSIV--HPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLI 183
                GH  +   P  +G+   R ALPL+MA+EPVYVNAKQY GILRRR+ RAKAELERK+I
Sbjct:   143 GAYGHQQLGFRPY-LGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVI 201

Query:   184 KVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTLPPNSSK 243
             + RKPYLHESRH HAMRRAR  GGRF   KK  S+   G    G       +T   NSS 
Sbjct:   202 RDRKPYLHESRHKHAMRRARASGGRFA--KK--SEVEAGEDAGGRDRERGSAT---NSSG 254

Query:   244 SESVATN 250
             SE V T+
Sbjct:   255 SEQVETD 261

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 71/157 (45%), Positives = 95/157 (60%)

Query:    83 TKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEY--LTQPSQLELVGHSIVHPQSMGV 140
             TK +  S     D  F      Q S SL   + S +     P        ++ H + MG+
Sbjct:   105 TKSITTSSMVSQDSVFPAPTSGQISWSLQCAETSHFNGFLAPEYAS-TPTALPHLEMMGL 163

Query:   141 HSARMALPLEMAE-EPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAM 199
              S+R+ LP  + E EP++VNAKQYH ILRRR+ RAK E + KLIK RKPYLHESRHLHA+
Sbjct:   164 VSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHAL 223

Query:   200 RRARGCGGRFVNTKKL-DSQTS--NGTVTNGTSLNVA 233
             +RARG GGRF+NTKKL +S  S  +  + NG + +++
Sbjct:   224 KRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMS 260

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 60/123 (48%), Positives = 78/123 (63%)

Query:   133 VHPQSMGVHSARMALPLEMAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHE 192
             V  Q MG+    + L  +  EEPV+VNAKQYHGILRRRQ RAK E   + IK +KPY+HE
Sbjct:    77 VQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHE 136

Query:   193 SRHLHAMRRARGCGGRFVNTKKLDSQ-TSNGTVTNGTSLNVAVSTLPPNSSKSESVATNY 251
             SRHLHA+RR RGCGGRF+N KK +         T+  + + A S+L    S+  ++AT+ 
Sbjct:   137 SRHLHAIRRPRGCGGRFLNAKKENGDHKEEEEATSDENTSEASSSL---RSEKLAMATSG 193

Query:   252 SRG 254
               G
Sbjct:   194 PNG 196

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 82/236 (34%), Positives = 110/236 (46%)

Query:    30 PWWRGVGHDSTSRAMLQG-------GIGNISSPREPINGVLVAKTSKSQVN---SGMDGG 79
             PWW   G    +   L G       G+  +++  E   GV+  +TS +       G    
Sbjct:    13 PWWNAFGSQPLTTESLSGEASDSFTGVKAVTTEAE--QGVVDKQTSTTLFTFSPGGEKSS 70

Query:    80 ADATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMG 139
              D  K  +      A  +FG  QP  ++    HP   +Y           + +V      
Sbjct:    71 RDVPKPHVAFAMQSACFEFGFAQPMMYT---KHPHVEQY-----------YGVVSAYGSQ 116

Query:   140 VHSARMALPLEMAEEP---VYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHL 196
               S R+ +PL+M  E    +YVN+KQYHGI+RRRQ RAKAE   KL + RKPY+H SRHL
Sbjct:   117 RSSGRVMIPLKMETEEDGTIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHL 173

Query:   197 HAMRRARGCGGRFVNTKKLDSQTSNGTVTNGTSLNVAVSTLPPNSSKSESVATNYS 252
             HAMRR RG GGRF+NTK  D+       +N  S  V     P N + + S   N S
Sbjct:   174 HAMRRPRGSGGRFLNTKTADA-AKQSKPSNSQSSEVFH---PENETINSSREANES 225

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query:   144 RMALPLEMAE-EPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRA 202
             R+ LP ++ E EPV+VNAKQ+H I+RRRQ RAK E + KLIK RKPYLHESRH+HA++R 
Sbjct:   161 RVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRP 220

Query:   203 RGCGGRFVNTKKLDSQT 219
             RG GGRF+NTKKL   T
Sbjct:   221 RGSGGRFLNTKKLQEST 237

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2078072 NF-YA2 ""nuclear factor Y, subunit A2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 85/260 (32%), Positives = 117/260 (45%)

Query:    24 FTISSQPWWRGVGHDSTSRAMLQGGIGNISSPREPI---NGVLVAKTSKSQVNSGMDGGA 80
             F+     WW   G    +   L G   + +  +       G  V K S S  +     G 
Sbjct:    11 FSAPQTSWWTAFGSQPLAPESLAGDSDSFAGVKVGSVGETGQRVDKQSNSATHLAFSLG- 69

Query:    81 DATKEMLMSVASQADGKFGGQQPSQHSVSLMHPQFSEYLTQPSQLELVGHSIVHPQSMGV 140
             D     L  V       F  Q P         P +++Y     Q     + +V   + G 
Sbjct:    70 DVKSPRL--VPKPHGATFSMQSPCLELGFSQPPIYTKYPYGEQQY----YGVV--SAYGS 121

Query:   141 HSARMALPLEMAEEP--VYVNAKQYHGILRRRQLRAKAE--LERKLI--KVRKPYLHESR 194
              S R+ LPL M  E   +YVN+KQYHGI+RRRQ RAKA   L++K +  + RKPY+H SR
Sbjct:   122 QS-RVMLPLNMETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSR 180

Query:   195 HLHAMRRARGCGGRFVNTKKLDSQTSNGTVTNGT-SLNVAVSTLPPNSSKSESVATNYSR 253
             HLHA+RR RG GGRF+NTK  + + S      G  S+ +     P  S+   S   +   
Sbjct:   181 HLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGSMQIQSQPKPQQSNSQNSEVVHPEN 240

Query:   254 GTADLSTGCREVTEPQVHKM 273
             GT +LS G   V+  +V  M
Sbjct:   241 GTMNLSNGLN-VSGSEVTSM 259

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 52/84 (61%), Positives = 66/84 (78%)

Query:   134 HPQSMGVHSARMALPLEMAE-EPVYVNAKQYHGILRRRQLRAKAELERKLIKVRK-PYLH 191
             +PQ + +   R+ LP E+ E +PV+VNAKQYH I+RRRQ RAK E + KLI+ RK PYLH
Sbjct:   158 NPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLH 217

Query:   192 ESRHLHAMRRARGCGGRFVNTKKL 215
             ESRH+HA++R RG GGRF+NTKKL
Sbjct:   218 ESRHVHALKRPRGSGGRFLNTKKL 241

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	4e-34
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	1e-33
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	4e-11

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  119 bits (300), Expect = 4e-34
 Identities = 46/57 (80%), Positives = 48/57 (84%)

Query: 153 EEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRF 209
           +EP+YVNAKQYH ILRRRQ RAK E E KLIK RKPYLHESRH HAMRR RG GGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  117 bits (296), Expect = 1e-33
 Identities = 49/62 (79%), Positives = 51/62 (82%)

Query: 151 MAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFV 210
             EEPVYVNAKQYH ILRRRQ RAK E + KL K RKPYLHESRHLHAMRR RG GGRF+
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 211 NT 212
           NT
Sbjct: 61  NT 62

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 62.1 bits (150), Expect = 4e-11
 Identities = 49/178 (27%), Positives = 74/178 (41%), Gaps = 10/178 (5%)

Query: 49  IGNISSPREPINGVLVAKTSKSQVNSGMDGGADATK-EMLMSVASQADGKFGGQQPSQHS 107
           I N S    PIN    + +  +   SG +  +   + E+ MS          G  P  H 
Sbjct: 54  ISNSSESPAPINSATASMSPANN-TSGNNITSPNVRGELDMSSGPTNTASTSG--PVPHD 110

Query: 108 VSLMHP---QFSEYLTQPSQLELVGHSIVHPQSMGVHSARMALPLEMAEEPVYVNAKQYH 164
           ++++       S  ++  SQL        +  +    +   A     + +P YVNAKQ +
Sbjct: 111 MTVLPQTDSNTSNLMSSGSQLGSFATQSTNGNNSTTTTTSSA-AHPGSFQPDYVNAKQGN 169

Query: 165 GILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTSNG 222
            I +R  LR    L+  +   R  YLHESRH HAM R R   GRF+   ++D     G
Sbjct: 170 EISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTG 225

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.8

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=2.5e-40  Score=313.59  Aligned_cols=199  Identities=34%  Similarity=0.453  Sum_probs=127.3

Q ss_pred             CCCCccccccccCCCCCCcccccccCCCCCC--CCCCCCCCccccccccccccCCCCCC-CCcccccccccccccc----
Q 019446           22 NSFTISSQPWWRGVGHDSTSRAMLQGGIGNI--SSPREPINGVLVAKTSKSQVNSGMDG-GADATKEMLMSVASQA----   94 (341)
Q Consensus        22 ~p~sv~S~PWW~~~G~~~~~~a~~g~~~s~~--ssS~E~png~~~s~~~ks~s~g~~~~-~~d~~k~sq~t~~~qs----   94 (341)
                      .-..+...|||+.++....+.....+-..++  +.....++|.....+....+-+..+. .+.+.+++|++....+    
T Consensus        16 ~~~~~~q~~~~~~~~~~~~p~~~~s~~~~q~~~s~~~~s~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~s~~s~~~~   95 (307)
T KOG1561|consen   16 KRREARQKPEERGVQTTKKPYLHESGHKHQMGPGGRFLSADGVSKLRAQEAANGGSTGDDVNATNNDAQVAATVSSEVTH   95 (307)
T ss_pred             ccccccccccccccccccccccCcccccccccccccccCccccccccccccccccccccccccccccceeeeccCCccee
Confidence            3456678999998888765554444333333  22222225544433333222222222 2334477777766555    


Q ss_pred             cCCCCCCCCCcc-----cccccCCCCc---------ccC---CCCCcc--------ccccccc--ccCCCCCCCC-CCCC
Q 019446           95 DGKFGGQQPSQH-----SVSLMHPQFS---------EYL---TQPSQL--------ELVGHSI--VHPQSMGVHS-ARMA  146 (341)
Q Consensus        95 ~g~~g~~q~~q~-----~~S~~~~~~~---------~~~---~~~~ql--------el~gh~i--~~~q~~G~~~-~r~~  146 (341)
                      ...++.......     ....+++.+.         -+.   .+.|.+        .|.++..  ..++..||.. .|++
T Consensus        96 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~p  175 (307)
T KOG1561|consen   96 VEGYADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTP  175 (307)
T ss_pred             ccccccccccccccccccccccCcccccccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCccc
Confidence            333333211100     0110111110         000   000110        2333433  4567789988 9999


Q ss_pred             CCCCCCC-CceeecchhhHHHHHHHHHHHHHHHhhhhhhcCCCcchhchhHHhhhccCCCCCcccccccCCccCC
Q 019446          147 LPLEMAE-EPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNTKKLDSQTS  220 (341)
Q Consensus       147 LP~e~~e-ePiyVNaKQY~rIlrRRq~Rak~e~e~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~kk~~~~~~  220 (341)
                      ||.++.+ ||||||||||+||||||++|||+|+++||+|.||||||||||+|||||+||+||||||+|+.+++.+
T Consensus       176 LP~~~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss  250 (307)
T KOG1561|consen  176 LPQTDSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDDSS  250 (307)
T ss_pred             CCccccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhhcc
Confidence            9999876 9999999999999999999999999999999999999999999999999999999999999777654

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=3.2e-36  Score=230.38  Aligned_cols=62  Identities=79%  Similarity=1.159  Sum_probs=60.1

Q ss_pred             CCCCceeecchhhHHHHHHHHHHHHHHHhhhhhhcCCCcchhchhHHhhhccCCCCCccccc
Q 019446          151 MAEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNT  212 (341)
Q Consensus       151 ~~eePiyVNaKQY~rIlrRRq~Rak~e~e~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~  212 (341)
                      ++++|||||||||++|||||++|||+|++++|++.||||||||||+|||+|+||+|||||++
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            46899999999999999999999999999999999999999999999999999999999975

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=5.7e-34  Score=215.79  Aligned_cols=57  Identities=81%  Similarity=1.174  Sum_probs=56.2

Q ss_pred             CCceeecchhhHHHHHHHHHHHHHHHhhhh-hhcCCCcchhchhHHhhhccCCCCCcc
Q 019446          153 EEPVYVNAKQYHGILRRRQLRAKAELERKL-IKVRKPYLHESRHLHAMRRARGCGGRF  209 (341)
Q Consensus       153 eePiyVNaKQY~rIlrRRq~Rak~e~e~kl-~k~rk~YlHESRH~HAm~R~Rg~gGRF  209 (341)
                      ++|||||||||++|||||++|||+|+++++ ++.||+|||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            689999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.80  E-value=1e-19  Score=167.83  Aligned_cols=85  Identities=38%  Similarity=0.493  Sum_probs=70.6

Q ss_pred             ccccCCCCCCCCCCCCCCCC-C--CCCceeecchhhHHHHHHHHHHHHHHHhhhhhhcCCCcchhchhHHhhhccCCCCC
Q 019446          131 SIVHPQSMGVHSARMALPLE-M--AEEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGG  207 (341)
Q Consensus       131 ~i~~~q~~G~~~~r~~LP~e-~--~eePiyVNaKQY~rIlrRRq~Rak~e~e~kl~k~rk~YlHESRH~HAm~R~Rg~gG  207 (341)
                      ++++...+|........|.. .  .++|.|||||||++|++||-+|++  ++.+|+-.|..|||||||+|||+|+|+++|
T Consensus       133 ~~~~qs~n~~ns~~~tt~~~~~p~sfqp~Yvnakq~n~i~kr~~~r~~--ld~~~~~~r~~ylHesrhkham~r~r~ptg  210 (248)
T COG5224         133 SFATQSTNGNNSTTTTTSSAAHPGSFQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTG  210 (248)
T ss_pred             hhhhhccccCCccccccccccCccccCcchhhhhhhhHHhcchhHHHH--HHHHhhhhhhhccccchhhhhhhcccCCCc
Confidence            34666677777777776653 2  479999999999999999999988  556777788889999999999999999999


Q ss_pred             cccccccCCc
Q 019446          208 RFVNTKKLDS  217 (341)
Q Consensus       208 RFl~~kk~~~  217 (341)
                      |||.+...+.
T Consensus       211 rfLtasEi~~  220 (248)
T COG5224         211 RFLTASEIDP  220 (248)
T ss_pred             ceecHHhhhh
Confidence            9997666554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	341
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		1e-17
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		6e-14

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 50/65 (76%)
Query: 153 EEPVYVNAKQYHGILRRRQLRAKAELERKLIKVRKPYLHESRHLHAMRRARGCGGRFVNT 212
           EEP+YVNAKQYH IL+RRQ RAK E E K+ K R+ YLHESRH HAM R RG GGRF + 
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP 61
Query: 213 KKLDS 217
           K+ DS
Sbjct: 62  KEKDS 66

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 153 EEPVYVNAKQYHGILRRRQLRAKAELERKLI-KVRKPYLHESRHLHAMRRARGCGGRFVN 211
           E P+YVNAKQ+H IL+RR  R K E + +L  K RKPYLHESRH HAMRR RG GGRF+ 
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLT 61
Query: 212 T 212
Sbjct: 62  A 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=6.7e-36  Score=228.82  Aligned_cols=62  Identities=63%  Similarity=0.987  Sum_probs=58.2

Q ss_pred             CCceeecchhhHHHHHHHHHHHHHHHhhhhh-hcCCCcchhchhHHhhhccCCCCCccccccc
Q 019446          153 EEPVYVNAKQYHGILRRRQLRAKAELERKLI-KVRKPYLHESRHLHAMRRARGCGGRFVNTKK  214 (341)
Q Consensus       153 eePiyVNaKQY~rIlrRRq~Rak~e~e~kl~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~kk  214 (341)
                      ++|||||||||++|||||++|||+|++++|+ +.||||||||||+|||+|+||+|||||++++
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            7899999999999999999999999999985 8899999999999999999999999998764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00