Citrus Sinensis ID: 019471

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MASLFSFSLPKPNIIKASSASAATTVVIPENLDEKFGRKGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQVIEHDNL
cccccccccccccccccccccccccccccccHHHHHccccEEEEEcccEEEEEEEcccccEEEEEEccEEEEEEcccccccccccEEEEEEEcccccccccEEcEEEEEcccccccccccccccccEEEEEEcccccccEEEEEcccccccccEEEEEEccccEEEEEEEEEcccccEEHHHHHccEEEEcccccEEEEcccccccccccccccccccccccHHccccccccccEEEEccEEEEcccccEEEEcccccccccEEcccccEEEEEEccccEEEEEEEcccccEEEEccccccccccccEEEEEEcccccccEEEccccEEEEEEEEEcccc
cccEEccccccccccEccccccccccccHHHHHHHHccccEEEEccccccEEEEEEccccEEEEEEcccEEEEEcccEEEccccEEEEEEEcccccccccEcccEEEEEcccccccccccccccccEEEEEccccccccEEEEEEcccccEEEEEEEEEcccccEEEEEEEccccccEEEEEEEEEEEEEcccccEEEEEcccccccccccccccccccccHHHcccccccccEEEccccHHHHccccccccccccHHHHHHHHccccccEEEEEcccccEEEEEEcccccEEEEccccHHHHccccEEEEEccHHEcccEEEccccEEEEEEEEccccc
maslfsfslpkpniikassasaattvvipenldekfgrkgikfsesnnipiveltvrngssvrlsipdahvtsykpkvewkddgfeEVLYTvggadsgakarggiglaindaseagskgslisssqwtvkdvdsdTIDALQVELSctsgalditYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKrrngtgirglkgcsyckhpplsspfellppseamkndekqgiwnvqdvpitVLKDKlsrvyaappaerskafyytppskfetlDQGRELFFRIIRIGfediylgspgsfsekygkdyfictgpaamLVPVVVQAgekwkgaqvIEHDNL
maslfsfslpkpniikassasaattvvipenldekfgrkgikfsesnnipiveltvrngssvrlsipdahvtsykpkvewkddgFEEVLYTVGGADSGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAappaerskafyytppskfetlDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKwkgaqviehdnl
MASLFSFSLPKPNIIKassasaaTTVVIPENLDEKFGRKGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKHpplsspfellppseAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQVIEHDNL
***********************TTVVIPENLDEKFGRKGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAI****************QWTVKDVDSDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKH**********************GIWNVQDVPITVLK*****************FYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQV******
********************************DEKFGRKGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLY*************GIGLAINDASE******LISSSQWTVK*V******ALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSE**********WNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQVIE****
MASLFSFSLPKPNIIKASSASAATTVVIPENLDEKFGRKGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQVIEHDNL
****FSFSLPKPNIIKASSASAATTVVIPENLDEKFGRKGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQVIEHD**
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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASLFSFSLPKPNIIKASSASAATTVVIPENLDEKFGRKGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQVIEHDNL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
255568932353 conserved hypothetical protein [Ricinus 1.0 0.963 0.736 1e-148
224145977355 predicted protein [Populus trichocarpa] 1.0 0.957 0.732 1e-142
225441631355 PREDICTED: uncharacterized protein LOC10 0.994 0.952 0.697 1e-138
147768692 754 hypothetical protein VITISV_016184 [Viti 0.95 0.428 0.697 1e-133
357508659355 hypothetical protein MTR_7g085490 [Medic 1.0 0.957 0.644 1e-130
356560959359 PREDICTED: uncharacterized protein LOC10 1.0 0.947 0.650 1e-129
297837765350 hypothetical protein ARALYDRAFT_475479 [ 0.985 0.957 0.673 1e-129
18408126348 NDH-dependent cyclic electron flow 1 [Ar 0.988 0.965 0.653 1e-124
356571694357 PREDICTED: uncharacterized protein LOC10 1.0 0.952 0.646 1e-124
449489516348 PREDICTED: uncharacterized protein LOC10 0.982 0.959 0.652 1e-122
>gi|255568932|ref|XP_002525436.1| conserved hypothetical protein [Ricinus communis] gi|223535249|gb|EEF36926.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 260/353 (73%), Positives = 296/353 (83%), Gaps = 13/353 (3%)

Query: 1   MASLFSFSLPKPNIIKASSASAATTVV-IPENLDEKFGRKGIKFSESNNIPIVELTVRNG 59
           MASL S SLPKP IIKA+S++  TT +  P+ L+EKFGRKGIKF ESNNIPI ELTVRNG
Sbjct: 1   MASLLSLSLPKPTIIKATSSTTTTTTLPSPDVLEEKFGRKGIKFLESNNIPIAELTVRNG 60

Query: 60  SSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGADSGAKARGGIGLAINDASEAGSKG 119
           SS+RL IPDAHVTSYKPKV WKDDGF E+LYTV G DS +KARGGIGL INDAS++GSKG
Sbjct: 61  SSLRLQIPDAHVTSYKPKVYWKDDGFHEILYTVPGKDSSSKARGGIGLVINDASDSGSKG 120

Query: 120 SLISSSQWTVKDVDSDTIDALQVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVT 179
           SLI++S+WTVKDVDSD IDALQVEL CTSG LDI+Y+VSLYP SMATAVIVKNNGRK VT
Sbjct: 121 SLITNSEWTVKDVDSDAIDALQVELGCTSGTLDISYIVSLYPESMATAVIVKNNGRKPVT 180

Query: 180 LTSAILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKN------------ 227
           LTSAILSHL FKRR    ++G +GCSY  HPPLSSPFE+L P EAMK+            
Sbjct: 181 LTSAILSHLKFKRRQKAAVQGFRGCSYLPHPPLSSPFEILSPGEAMKSESPGLFDFSSEP 240

Query: 228 DEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRI 287
           ++K GIW VQDVP T+LK+K SR+YAAPP ER KAFY TPPSK+ETLDQG ELFFR+IR+
Sbjct: 241 EDKLGIWGVQDVPFTILKNKFSRIYAAPPQERLKAFYNTPPSKYETLDQGLELFFRVIRM 300

Query: 288 GFEDIYLGSPGSFSEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQVIEHDNL 340
           GFED Y+GSPGS SEKYG++YFICTGPAAM+VPV+V+ GE W+GAQVIEHDNL
Sbjct: 301 GFEDTYMGSPGSLSEKYGEEYFICTGPAAMIVPVIVKPGEDWRGAQVIEHDNL 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224145977|ref|XP_002325834.1| predicted protein [Populus trichocarpa] gi|222862709|gb|EEF00216.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225441631|ref|XP_002282103.1| PREDICTED: uncharacterized protein LOC100252010 [Vitis vinifera] gi|297739753|emb|CBI29935.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147768692|emb|CAN71659.1| hypothetical protein VITISV_016184 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357508659|ref|XP_003624618.1| hypothetical protein MTR_7g085490 [Medicago truncatula] gi|124365567|gb|ABN09801.1| Galactose mutarotase-like [Medicago truncatula] gi|355499633|gb|AES80836.1| hypothetical protein MTR_7g085490 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356560959|ref|XP_003548753.1| PREDICTED: uncharacterized protein LOC100805680 [Glycine max] Back     alignment and taxonomy information
>gi|297837765|ref|XP_002886764.1| hypothetical protein ARALYDRAFT_475479 [Arabidopsis lyrata subsp. lyrata] gi|297332605|gb|EFH63023.1| hypothetical protein ARALYDRAFT_475479 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18408126|ref|NP_564840.1| NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] gi|15028029|gb|AAK76545.1| unknown protein [Arabidopsis thaliana] gi|21280797|gb|AAM45001.1| unknown protein [Arabidopsis thaliana] gi|21554059|gb|AAM63140.1| unknown [Arabidopsis thaliana] gi|332196164|gb|AEE34285.1| NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356571694|ref|XP_003554009.1| PREDICTED: uncharacterized protein LOC100788455 [Glycine max] Back     alignment and taxonomy information
>gi|449489516|ref|XP_004158335.1| PREDICTED: uncharacterized protein LOC101225062 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
TAIR|locus:2035646354 NDF5 "NDH-dependent cyclic ele 0.588 0.564 0.237 2.3e-13
UNIPROTKB|G4N684326 MGG_08597 "Uncharacterized pro 0.208 0.217 0.289 6.4e-06
TAIR|locus:2035646 NDF5 "NDH-dependent cyclic electron flow 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 195 (73.7 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 52/219 (23%), Positives = 101/219 (46%)

Query:   125 SQWTVKDVDSDTIDALQVELSCTSGAL---DITYVVSLYPLSMATAVIVKNNGRKAVTLT 181
             S W ++ +  D+ D +Q+EL  +   +   ++  ++SL   +++  + + N G   + L 
Sbjct:   150 SDWRLQGISGDSKDCVQMELRRSDKKIKEIELKQIISLRENTLSIELSMTNKGISPIKLE 209

Query:   182 S-AILSHLLFKRRNGTGIRGLKGCSYCKHXXXXXXXXXXXXXXAMKNDEKQGIWNVQDVP 240
               +++S+L       T   GL+G  + +                 K +EK G    ++  
Sbjct:   210 GCSLVSYLTVSTPEATYAVGLEGSDFVE---TTPFLPRFGVVQGEKEEEKPGFGGEEESN 266

Query:   241 ITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSF 300
                L  ++SR+Y   P              F  +D+GR     + R GFE++Y+ SPGS 
Sbjct:   267 YKQLNREMSRIYTCAP------------KSFTVIDRGRRNSVVVGREGFEEVYMYSPGSR 314

Query:   301 SEKYGKDYFICTGPAAMLVPVVVQAGEKWKGAQVIEHDN 339
              E Y K  ++C GP+++L P+ +++G  W+G   + + N
Sbjct:   315 LESYTKSAYVCIGPSSLLSPISLESGCVWRGVLHLHNPN 353
GO:0003824 "catalytic activity" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IMP
GO:0010628 "positive regulation of gene expression" evidence=IMP
GO:0016020 "membrane" evidence=IDA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0016556 "mRNA modification" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
UNIPROTKB|G4N684 MGG_08597 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
cd09020269 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate 2e-10
>gnl|CDD|185697 cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like Back     alignment and domain information 
 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 60/326 (18%), Positives = 104/326 (31%), Gaps = 103/326 (31%)

Query: 54  LTVRN-GSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGA--DSGAKARGGI----- 105
           + + + G+S  +++  A V S+KPK      G +++L+    A  D G   RGGI     
Sbjct: 2   IVLDHPGASAEIALQGAQVLSWKPK------GGQDLLWLSPQAPFDGGKAIRGGIPVCWP 55

Query: 106 --------------GLAINDASEAGSKGSLISSSQWTVKDVDSDTIDALQVELSCTSGAL 151
                         G A                  W + +V  D  D + V L       
Sbjct: 56  WFGPHGPNADLPAHGFART--------------RLWELLEVSEDE-DGVTVSLELDDTDE 100

Query: 152 D---------ITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRR----NGTGI 198
                     +   V+L   ++   + V N G K  + T+A+ ++     R        +
Sbjct: 101 TRAIWPHAFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYF----RVSDIEQVRV 156

Query: 199 RGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAE 258
            GL+G +Y                + + +  ++    VQ   +T               +
Sbjct: 157 EGLEGATY---------------LDKLTDQREK----VQGGAVTF----------DGEVD 187

Query: 259 RSKAFYYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGSFSEKYGK-------DY--F 309
           R    Y   P+     D       RI + G     + +P    EK  +        Y   
Sbjct: 188 R---VYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWI--EKAARMADFPDDGYRRM 242

Query: 310 ICTGPAAMLVPVVVQAGEKWKGAQVI 335
           +C   A +  PV +  GE    +Q I
Sbjct: 243 VCVEAANVADPVTLAPGESHTLSQTI 268

D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P. Length = 269

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
KOG1594305 consensus Uncharacterized enzymes related to aldos 100.0
cd09020269 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase- 100.0
COG0676287 Uncharacterized enzymes related to aldose 1-epimer 100.0
cd09025271 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to 100.0
cd09024288 Aldose_epim_lacX Aldose 1-epimerase, similar to La 100.0
cd09021273 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to 100.0
PF01263300 Aldose_epim: Aldose 1-epimerase; InterPro: IPR0081 100.0
cd01081284 Aldose_epim aldose 1-epimerase superfamily. Aldose 99.97
cd09022284 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to 99.96
PRK15172300 putative aldose-1-epimerase; Provisional 99.95
COG2017308 GalM Galactose mutarotase and related enzymes [Car 99.94
cd09019326 galactose_mutarotase_like galactose mutarotase_lik 99.92
PLN00194337 aldose 1-epimerase; Provisional 99.86
TIGR02636335 galM_Leloir galactose mutarotase. Members of this 99.81
cd09023284 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar t 99.73
PRK11055342 galM galactose-1-epimerase; Provisional 99.72
PTZ00485376 aldolase 1-epimerase; Provisional 99.57
PF14486302 DUF4432: Domain of unknown function (DUF4432); PDB 99.02
KOG1604353 consensus Predicted mutarotase [Carbohydrate trans 98.86
cd09269293 deoxyribose_mutarotase deoxyribose mutarotase_like 98.82
PF14315274 DUF4380: Domain of unknown function (DUF4380) 96.36
TIGR03593366 yidC_nterm membrane protein insertase, YidC/Oxa1 f 89.52
PF14849270 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_ 86.43
COG0832106 UreB Urea amidohydrolase (urease) beta subunit [Am 84.95
PRK01318 521 membrane protein insertase; Provisional 83.37
PRK13203102 ureB urease subunit beta; Reviewed 81.29
TIGR00192101 urease_beta urease, beta subunit. In a number of s 81.22
cd00407101 Urease_beta Urease beta-subunit; Urease is a nicke 81.09
PF00699100 Urease_beta: Urease beta subunit CAUTION: The Pros 80.29
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-61  Score=432.46  Aligned_cols=262  Identities=18%  Similarity=0.326  Sum_probs=227.9

Q ss_pred             ceEEee-eCCeeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCC--CCCCCCccceeeeeeeecCCCC
Q 019471           40 GIKFSE-SNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG--ADSGAKARGGIGLAINDASEAG  116 (340)
Q Consensus        40 g~~~~~-~~g~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~--~~~~~~irGGiPvlfP~fg~~g  116 (340)
                      ++.... .+|++.|.|++++|++|+|+++||+|+|      |+...|+|+||++..  +++.+|||||||+|||+||+-|
T Consensus        13 ~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~S------WK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g   86 (305)
T KOG1594|consen   13 PVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVS------WKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFG   86 (305)
T ss_pred             cceeecccCCCceEEEeCCCCCeEEEEEeccEEEE------eecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCC
Confidence            344444 7999999999999999999999999999      556789999999887  9999999999999999999866


Q ss_pred             --CCCccccCCCeEEEEEcCCCC----CeEEEEE-------cccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeee
Q 019471          117 --SKGSLISSSQWTVKDVDSDTI----DALQVEL-------SCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSA  183 (340)
Q Consensus       117 --~~HGfar~~~W~v~~~~~~~~----~~v~~~L-------~~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g  183 (340)
                        ++|||||++.|++++......    ..|.+.|       +.|||+|+++|++.|.++.|+++.+|+|++++|+.|+++
T Consensus        87 ~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~a  166 (305)
T KOG1594|consen   87 SLPQHGFARNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFSFSFA  166 (305)
T ss_pred             cccccccccceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceEEEeE
Confidence              999999999999987533211    2466666       479999999999999999999999999999999999999


Q ss_pred             ccceEecCCCCceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCccccccc
Q 019471          184 ILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAF  263 (340)
Q Consensus       184 ~Hpyf~v~~~~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~  263 (340)
                      +|+||+|+|+..++++||++++|+|+.....+                   ..++.++++|.+++||||.+         
T Consensus       167 lHtYf~vsdisevrveGL~tldylD~~~~~~~-------------------~tE~~davTF~~e~DrvYl~---------  218 (305)
T KOG1594|consen  167 LHTYFRVSDISEVRVEGLETLDYLDNLKNRER-------------------FTEQRDAVTFNSEVDRVYLN---------  218 (305)
T ss_pred             eeeeEeecccceEEEeccccccccccccchhh-------------------ccccCceEeeccceeeEEec---------
Confidence            99999999999999999999999987642111                   12335778999999999975         


Q ss_pred             ccCCCCeEEEEeCCCCeEEEEEEcCCceEEEeCCCC-----CCCCCCC--CeEEEecCcccCCCEEeCCCCEEEEEEEEE
Q 019471          264 YYTPPSKFETLDQGRELFFRIIRIGFEDIYLGSPGS-----FSEKYGK--DYFICTGPAAMLVPVVVQAGEKWKGAQVIE  336 (340)
Q Consensus       264 ~~~~~~~~~l~d~~~~~~i~v~~~gf~~~vvWnP~~-----~~d~~~~--~~fvCvEP~~~~~~v~L~PGe~~~~~~~I~  336 (340)
                         .|.++.|.|..++++|.+.+.|++++||||||.     |+|+.+.  +.|+|||++++.+|+.|+||++|++.|.+.
T Consensus       219 ---tp~e~aI~dh~~krti~l~k~g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Ls  295 (305)
T KOG1594|consen  219 ---TPTELAIFDHEKKRTIVLKKEGLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLS  295 (305)
T ss_pred             ---CCceEEEEEeccccEEEEeccCCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEE
Confidence               667799999999999999999999999999994     7886533  359999999999999999999999999887


Q ss_pred             ee
Q 019471          337 HD  338 (340)
Q Consensus       337 ~~  338 (340)
                      +.
T Consensus       296 iv  297 (305)
T KOG1594|consen  296 IV  297 (305)
T ss_pred             Ee
Confidence            64

>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like Back     alignment and domain information
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438 Back     alignment and domain information
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX Back     alignment and domain information
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB Back     alignment and domain information
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5 Back     alignment and domain information
>cd01081 Aldose_epim aldose 1-epimerase superfamily Back     alignment and domain information
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR Back     alignment and domain information
>PRK15172 putative aldose-1-epimerase; Provisional Back     alignment and domain information
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09019 galactose_mutarotase_like galactose mutarotase_like Back     alignment and domain information
>PLN00194 aldose 1-epimerase; Provisional Back     alignment and domain information
>TIGR02636 galM_Leloir galactose mutarotase Back     alignment and domain information
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013 Back     alignment and domain information
>PRK11055 galM galactose-1-epimerase; Provisional Back     alignment and domain information
>PTZ00485 aldolase 1-epimerase; Provisional Back     alignment and domain information
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A Back     alignment and domain information
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like Back     alignment and domain information
>PF14315 DUF4380: Domain of unknown function (DUF4380) Back     alignment and domain information
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain Back     alignment and domain information
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B Back     alignment and domain information
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PRK01318 membrane protein insertase; Provisional Back     alignment and domain information
>PRK13203 ureB urease subunit beta; Reviewed Back     alignment and domain information
>TIGR00192 urease_beta urease, beta subunit Back     alignment and domain information
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide Back     alignment and domain information
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 4e-13
1jov_A270 HI1317; hypothetical protein, structure 2 function 1e-10
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 2e-09
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Length = 297 Back     alignment and structure
 Score = 67.8 bits (165), Expect = 4e-13
 Identities = 55/320 (17%), Positives = 90/320 (28%), Gaps = 69/320 (21%)

Query: 52  VELTVRNGSSVRLSIPD--AHVTSYKPKVEWKDDGFEEVLYTVGGA--DSGAKARGGIGL 107
           V LT     +  + I    A V S      WK    EE L+    A  D     RGGI L
Sbjct: 10  VVLTHPADETTSVHILKYGATVYS------WKLKS-EEQLWLSTAAKLDGSKPVRGGIPL 62

Query: 108 AINDASEAGSKGSLISSSQ--------WTVKDVDSDTIDALQVELSCTS----------G 149
                 +  +   L    Q        W       +    +Q  L               
Sbjct: 63  VFPVFGKNSTDEHLSKLPQHGLARNSTWEFLGQTKENPPTVQFGLKPEIANPELTKLWPM 122

Query: 150 ALDITYVVSLYPLSMATAVIVKNNGR-KAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCK 208
              +   V L    + TA+ V+N    K +       ++   +   GT +  L G     
Sbjct: 123 DYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKL-- 180

Query: 209 HPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPP 268
                              D+      V   P+     +   +Y                
Sbjct: 181 ------------------YDQLLKESYVDKHPVVTFNQETDVIYQNVS----------AE 212

Query: 269 SKFETLDQGRELFFRIIRIGFEDIYLGSPG--------SFSEKYGKDYFICTGPAAMLVP 320
              + +D+G ++   + R    D  + +P          F  K G    IC  P  +   
Sbjct: 213 RAIQIVDKGVQIH-TLKRYNLPDTVVWNPWIEKSQGMADFEPKTGYQQMICIEPGHVHDF 271

Query: 321 VVVQAGEKWKGAQVIEHDNL 340
           + +  G+KW   Q++  + L
Sbjct: 272 ISLAPGKKWNAYQLLCKEEL 291
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Length = 270 Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Length = 309 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
1jov_A270 HI1317; hypothetical protein, structure 2 function 100.0
3k25_A289 SLR1438 protein; structural genomics, PSI-2, prote 100.0
2hta_A309 Putative enzyme related to aldose 1-epimerase; car 100.0
2cir_A297 Hexose-6-phosphate mutarotase; hypothetical protei 100.0
3mwx_A326 Aldose 1-epimerase; structural genomics, joint cen 100.0
3os7_A341 Galactose mutarotase-like protein; structural geno 100.0
3dcd_A307 Galactose mutarotase related enzyme; Q5FKD7 LAR33 100.0
3q1n_A294 Galactose mutarotase related enzyme; structural ge 100.0
3nre_A291 Aldose 1-epimerase; structural genomics, joint cen 100.0
1yga_A342 Hypothetical 37.9 kDa protein in BIO3-HXT17 interg 100.0
1snz_A344 Aldose 1-epimerase; mutarotase, galactosemia, isom 99.97
1lur_A339 Aldose 1-epimerase; vitamin B12, methyltransferase 99.95
1nsx_A347 Galactose mutarotase; epimerase, galactose metabol 99.93
1z45_A699 GAL10 bifunctional protein; epimerase, mutarotase, 99.93
3imh_A338 Galactose-1-epimerase; structural genomics, PSI-2, 99.88
3ty1_A384 Hypothetical aldose 1-epimerase; supersandwich, st 99.84
4ep8_B101 Urease subunit beta; alpha-beta barrel, nickel met 83.71
3bs6_A280 Inner membrane protein OXAA; YIDC/OXA1/ALB3 family 81.67
>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} SCOP: b.30.5.7 Back     alignment and structure
Probab=100.00  E-value=4.5e-50  Score=374.44  Aligned_cols=250  Identities=13%  Similarity=0.193  Sum_probs=206.2

Q ss_pred             CceEEeeeCCeeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCC--CCCCCCccceeeeeeeecCCCC
Q 019471           39 KGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG--ADSGAKARGGIGLAINDASEAG  116 (340)
Q Consensus        39 ~g~~~~~~~g~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~--~~~~~~irGGiPvlfP~fg~~g  116 (340)
                      +.+++...+|++.++|++++ .+|+|.++||+|+||+    . ..+++|+||+++.  |++++++|||+||||||||+.+
T Consensus        11 ~~~~~~~~~~~~~~~l~~~~-~~a~i~~~Ga~l~s~~----~-~~~g~e~Lw~~~~~~~~~~~~irGGiPvlfP~~gr~~   84 (270)
T 1jov_A           11 PELHLVQHNDIPVLHLKHAV-GTAKISLQGAQLISWK----P-QNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVK   84 (270)
T ss_dssp             TTEEEEEETTEEEEEEEETT-EEEEEETBTTEEEEEE----E-TTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGGS
T ss_pred             CceEEeeeCCceEEEEeCCC-cEEEEECCCCEEEEEE----E-CCCCceEEEECcHHhcCCCCCccCccEEEEeccCCCC
Confidence            34888778999999999955 6999999999999976    2 2367999999876  8999999999999999999876


Q ss_pred             -CCCccccCCCeEEEEEcCCCCCeE--EEEEcccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecCCC
Q 019471          117 -SKGSLISSSQWTVKDVDSDTIDAL--QVELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRR  193 (340)
Q Consensus       117 -~~HGfar~~~W~v~~~~~~~~~~v--~~~L~~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~~~  193 (340)
                       ++|||||++.|+|.+.+.+ ++++  ++.|...++.|+++++|+|.   |+++++|+|+|++  ||++|+||||+|+++
T Consensus        85 ~~~HGfaR~~~W~v~~~~~~-~~~v~l~~~l~~~~~~f~l~~~~~L~---l~~~~~v~N~g~~--p~~~g~HpyF~v~d~  158 (270)
T 1jov_A           85 QPAHGTARIRLWQLSHYYIS-VHKVRLEFELFSDLNIIEAKVSMVFT---DKCHLTFTHYGEE--SAQAALHTYFNIGDI  158 (270)
T ss_dssp             SSTTBSGGGSBCEEEEEEEE-TTEEEEEEEEECTTSCEEEEEEEEES---SSEEEEEEECCSS--CEEEEECCEEECSCG
T ss_pred             CCCCceecCCCcEEeeeccC-CCcEEEEEEECCCccccEEEEEEEEC---CeEEEEEEeCCch--hHhhhcccceecCCc
Confidence             9999999999999988633 2344  55555667889999999995   9999999999986  689999999999999


Q ss_pred             CceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCcccccccccCCCCeEEE
Q 019471          194 NGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFET  273 (340)
Q Consensus       194 ~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~~~~~~~~l  273 (340)
                      +++++.|+. ..|+|+.+         . +  .        ..+ .+.+.+..++||+|.+            .++.++|
T Consensus       159 ~~~~v~g~~-~~~~d~l~---------~-~--~--------~~~-~~~~~~~~~~D~vy~~------------~~~~~~i  204 (270)
T 1jov_A          159 NQVEVQGLP-ETCFNSLN---------Q-Q--Q--------ENV-PSPRHISENVDCIYSA------------ENMQNQI  204 (270)
T ss_dssp             GGEEEESCC-SEEEETTT---------T-E--E--------EEC-CSSBCCSSCEEEEEEC------------SSSEEEE
T ss_pred             ceEEEECCC-CcceeccC---------C-c--c--------ccc-CCcccCCCCccceeCC------------CCCCEEE
Confidence            999999994 57887653         1 0  0        011 2345677889999974            4567899


Q ss_pred             EeCCCCeEEEEEEcCCceEEEeCCCC--CCCCCC--CCeEEEecCcccCCCEEeCCCCEEEEEEEEE
Q 019471          274 LDQGRELFFRIIRIGFEDIYLGSPGS--FSEKYG--KDYFICTGPAAMLVPVVVQAGEKWKGAQVIE  336 (340)
Q Consensus       274 ~d~~~~~~i~v~~~gf~~~vvWnP~~--~~d~~~--~~~fvCvEP~~~~~~v~L~PGe~~~~~~~I~  336 (340)
                      .|++.+++|+|++++++++||||||.  |+||.+  +.+||||||+..  .+.|+|||+|+++++|+
T Consensus       205 ~d~~~~~~i~v~~~~~~~~vvWnP~~~~~~d~~~~~~~~fvCvEp~~~--~~~L~PGe~~~~~~~i~  269 (270)
T 1jov_A          205 LDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSETGYQKMLCLETARI--HHLLEFGESLSVEISLK  269 (270)
T ss_dssp             EETTTTEEEEEEEESCSEEEEEECTTSCCTTCCTTGGGGEEEEEEEEE--EEEECTTCEEEEEEEEC
T ss_pred             EECCCCcEEEEEEcCCCeEEEECCCcccccccccccCccEEEeCcccc--ceEECCCCEEEEEEEEE
Confidence            99999999999999999999999984  777764  346999999854  36899999999999885
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} Back     alignment and structure
>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, MU YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A Back     alignment and structure
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* Back     alignment and structure
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis} Back     alignment and structure
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} Back     alignment and structure
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei} Back     alignment and structure
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli} Back     alignment and structure
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} SCOP: b.30.5.4 PDB: 1so0_A* Back     alignment and structure
>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} SCOP: b.30.5.4 Back     alignment and structure
>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} SCOP: b.30.5.4 PDB: 1nsz_A* 1mmu_A* 1l7k_A* 1l7j_A* 1mmx_A* 1mmy_A* 1mmz_A* 1mn0_A* 1ns0_A* 1ns4_A* 1ns8_A* 1nsr_A* 1nsu_A* 1nsv_A* 1ns7_A* 1ns2_A* 1nsm_A* 1nss_A* Back     alignment and structure
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Back     alignment and structure
>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.76A {Lactobacillus acidophilus} Back     alignment and structure
>3ty1_A Hypothetical aldose 1-epimerase; supersandwich, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.90A {Klebsiella pneumoniae subsp} Back     alignment and structure
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ... Back     alignment and structure
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 340
d1jova_269 b.30.5.7 (A:) Hypothetical protein HI1317 {Haemoph 4e-22
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Length = 269 Back     information, alignment and structure

class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

 Score = 91.7 bits (227), Expect = 4e-22
 Identities = 35/305 (11%), Positives = 84/305 (27%), Gaps = 55/305 (18%)

Query: 40  GIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGGA--DS 97
            +   + N+IP++ L    G + ++S+  A + S+KP+     +  ++VL+        +
Sbjct: 12  ELHLVQHNDIPVLHLKHAVG-TAKISLQGAQLISWKPQ-----NAKQDVLWLSEVEPFKN 65

Query: 98  GAKARGGIGLAINDASEAGSKGS-LISSSQWTVKDVDSDTIDA-LQVELSCTSGALDITY 155
           G   RGG+ +                    W +           L+ EL      ++   
Sbjct: 66  GNAIRGGVPICYPWFGGVKQPAHGTARIRLWQLSHYYISVHKVRLEFELFSDLNIIEAKV 125

Query: 156 VVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRRNGTGIRGLKGCSYCKHPPLSSP 215
            +            +        +  +A+ ++      N   ++GL    +         
Sbjct: 126 SMVF-----TDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCF--------- 171

Query: 216 FELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFETLD 275
                       +           P  +             +E     Y     + + LD
Sbjct: 172 ------------NSLNQQQENVPSPRHI-------------SENVDCIYSAENMQNQILD 206

Query: 276 QGRELFFRIIRIGFEDIYLGSPGSFSEKYGKDY----FICTGPAAMLVPVVVQAGEKWKG 331
           +       +         L +P         +      +C   A +    +++ GE    
Sbjct: 207 KSFNRTIALHHHNASQFVLWNPWHKKTSGMSETGYQKMLCLETARIH--HLLEFGESLSV 264

Query: 332 AQVIE 336
              ++
Sbjct: 265 EISLK 269

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d1jova_269 Hypothetical protein HI1317 {Haemophilus influenza 100.0
d1z45a1342 Galactose mutarotase {Baker's yeast (Saccharomyces 99.76
d1so0a_344 Galactose mutarotase {Human (Homo sapiens) [TaxId: 99.7
d1lura_329 Aldose 1-epimerase homologue {Nematode (Caenorhabd 99.68
d1nsza_340 Galactose mutarotase {Lactococcus lactis [TaxId: 1 99.66
d1ejxb_101 Urease, beta-subunit {Klebsiella aerogenes [TaxId: 82.64
>d1jova_ b.30.5.7 (A:) Hypothetical protein HI1317 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Hypothetical protein HI1317
domain: Hypothetical protein HI1317
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=2.2e-56  Score=414.57  Aligned_cols=250  Identities=14%  Similarity=0.203  Sum_probs=202.8

Q ss_pred             CceEEeeeCCeeEEEEEeCCCCEEEEecCCeEEEEecccccccCCCceEEEEecCC--CCCCCCccceeeeeeeecCCCC
Q 019471           39 KGIKFSESNNIPIVELTVRNGSSVRLSIPDAHVTSYKPKVEWKDDGFEEVLYTVGG--ADSGAKARGGIGLAINDASEAG  116 (340)
Q Consensus        39 ~g~~~~~~~g~~~v~l~~~~g~~a~I~~~GA~v~S~~~~~~w~~~~g~e~L~~~~~--~~~~~~irGGiPvlfP~fg~~g  116 (340)
                      ++|++.+.+++++++|+++. .+|+|+++||+|+||++     +.+++||||+++.  |+++++|||||||||||||+.+
T Consensus        11 ~~~~~~~~~~l~~i~i~~~~-~~a~i~~~Ga~l~s~~~-----~~~~~e~Lw~s~~a~~~~~~~IRGGiPi~fP~fG~~~   84 (269)
T d1jova_          11 PELHLVQHNDIPVLHLKHAV-GTAKISLQGAQLISWKP-----QNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVK   84 (269)
T ss_dssp             TTEEEEEETTEEEEEEEETT-EEEEEETBTTEEEEEEE-----TTCSSCSBCBCTTCCCCTTSCCSBSCCEEBSSCGGGS
T ss_pred             CeEEeeccCCccEEEEeCCC-EEEEEECCCCEEEEEEE-----CCCCceEEEeCChhhccCCCcccCCcceeCcccCCCC
Confidence            56889889999999999965 78999999999999652     2367899999887  9999999999999999999876


Q ss_pred             -CCCccccCCCeEEEEEcCCCCCeEE--EEEcccCCceEEEEEEEEeCCceEEEEEEEECCCcceeeeeeccceEecCCC
Q 019471          117 -SKGSLISSSQWTVKDVDSDTIDALQ--VELSCTSGALDITYVVSLYPLSMATAVIVKNNGRKAVTLTSAILSHLLFKRR  193 (340)
Q Consensus       117 -~~HGfar~~~W~v~~~~~~~~~~v~--~~L~~~p~~f~l~~~~tL~~~~L~~~l~v~N~g~~~~~f~~g~Hpyf~v~~~  193 (340)
                       ++|||||++.|+|++++++ ...++  +++..+||.|+++++|+|+     ++++++|+++++|||++|+||||+|++.
T Consensus        85 ~p~HGFAR~~~w~l~~~~~~-~~~~~l~~~l~~~~~~f~~~~~~~lt-----l~~~l~n~~~~~~pf~~g~HpyF~v~d~  158 (269)
T d1jova_          85 QPAHGTARIRLWQLSHYYIS-VHKVRLEFELFSDLNIIEAKVSMVFT-----DKCHLTFTHYGEESAQAALHTYFNIGDI  158 (269)
T ss_dssp             SSTTBSGGGSBCEEEEEEEE-TTEEEEEEEEECTTSCEEEEEEEEES-----SSEEEEEEECCSSCEEEEECCEEECSCG
T ss_pred             CCCCccccccceEEEEEecC-CceEEEEEEeccCCCcceEEEEEEec-----cEEEEEEccCCCccceecccceEecCCc
Confidence             9999999999999998766 33444  4455678888888888763     4566777778899999999999999999


Q ss_pred             CceEEecCCCCceecCCCCCCCCccCCcccccccccccccceeeccCeeeeccccceeecCCCcccccccccCCCCeEEE
Q 019471          194 NGTGIRGLKGCSYCKHPPLSSPFELLPPSEAMKNDEKQGIWNVQDVPITVLKDKLSRVYAAPPAERSKAFYYTPPSKFET  273 (340)
Q Consensus       194 ~~~~v~gl~g~~y~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Drvy~~~~~~~~d~~~~~~~~~~~l  273 (340)
                      +++.+.|++++.|.+...         .    .        ... .+.+.+.+++||+|.+            .+..++|
T Consensus       159 ~~~~v~gl~~~~~~~~~~---------~----~--------~~~-~~~~~~~~~~D~i~~~------------~~~~~~i  204 (269)
T d1jova_         159 NQVEVQGLPETCFNSLNQ---------Q----Q--------ENV-PSPRHISENVDCIYSA------------ENMQNQI  204 (269)
T ss_dssp             GGEEEESCCSEEEETTTT---------E----E--------EEC-CSSBCCSSCEEEEEEC------------SSSEEEE
T ss_pred             cceEEecCCccccccccc---------c----c--------ccc-CCCcccCcCeeEEecC------------CCCcEEE
Confidence            999999999877644331         0    0        111 1335678889999964            4566899


Q ss_pred             EeCCCCeEEEEEEcCCceEEEeCCCC--CCCCC--CCCeEEEecCcccCCCEEeCCCCEEEEEEEEE
Q 019471          274 LDQGRELFFRIIRIGFEDIYLGSPGS--FSEKY--GKDYFICTGPAAMLVPVVVQAGEKWKGAQVIE  336 (340)
Q Consensus       274 ~d~~~~~~i~v~~~gf~~~vvWnP~~--~~d~~--~~~~fvCvEP~~~~~~v~L~PGe~~~~~~~I~  336 (340)
                      .|.+.+++|+|+.+||+++||||||.  ..+|+  +++.||||||++..  .+|+|||+|+++++|+
T Consensus       205 ~d~~~~~~i~v~~~g~~~~vVWnP~~~~a~~~~d~~~~~fvCVEp~~~~--~~L~PGes~~~~~~ir  269 (269)
T d1jova_         205 LDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSETGYQKMLCLETARIH--HLLEFGESLSVEISLK  269 (269)
T ss_dssp             EETTTTEEEEEEEESCSEEEEEECTTSCCTTCCTTGGGGEEEEEEEEEE--EEECTTCEEEEEEEEC
T ss_pred             EeCCCCCEEEEEEeCCCcEEEECCccchhccccccCCCCEEEECcccCC--ceECCCCeEEEEEEEC
Confidence            99999999999999999999999986  23333  34469999999754  3799999999999884
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1so0a_ b.30.5.4 (A:) Galactose mutarotase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lura_ b.30.5.4 (A:) Aldose 1-epimerase homologue {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nsza_ b.30.5.4 (A:) Galactose mutarotase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]} Back     information, alignment and structure