Citrus Sinensis ID: 019482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS
Secondary Structure (PSIPRED)
cccccEEEEEEEEccccEEEEEEccccEEEEccccEEEEEEEcccEEEEEEcccEEEccccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEEcccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEccccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEccccccccEEEEEEccccccccccEEEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEEEEcccEEEEc
Secondary Structure Prediction (SSPRO)
cccccEEEEccEEEcccccEEEEEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEEEcccccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEEccccccccc
Coil and Loop (DISEMBL)
megggtvtcgswikrpenvnLVVLGkssrassspsvleifsfdpkttsvytsplvtyvfdesegdpmtiavnpsgddfvcsttnggcklfevyggatdinllakkmpplqdagpqkclsfsvdgsrfaaggvdghlrimhwpslriildepkahksvldmdfsldSEFLattstdgsariwktEDGVAWTFltrnsdekielcrfskdgtkpflfctvqrgdKALLAVYDISTwnkighkrllrkpasvlsISLDGKylamgskdgdicvvDVKKMEINHWSKRLHLGTsialvefcptqRVVLTASKEWGAMITKltvpadwkglslpllhshsqnsvs
Flexible Loop (DISEMBL)
megggtvtcgswikrpenVNLVVLGkssrassspsvleifsfdpkttsvytSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAttstdgsariwkteDGVAWTFLTRNSDEKIELCrfskdgtkpflFCTVQRGDKALLAVYDISTwnkighkrllrkpasvLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLslpllhshsqnsvs
Low Complexity Region (SEG)
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS
Disordered region (IsUnstruct)
******VTCGSWIKRPENVNLVVLG**********VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLL*********
Disordered Region (DISOPRED)
*EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHS**SVS
Disordered Region (DISEMBL)
MEGGGTVTCGSWIKRPENVNLVVLGKS********VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLH********
Disordered Region (DISPRO)
****GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q8GYE0	398	SEC12-like protein 1 OS=A	yes	no	0.941	0.804	0.651	1e-126
Q39221	393	SEC12-like protein 2 OS=A	no	no	0.838	0.725	0.294	1e-26
Q9WTV0	417	Prolactin regulatory elem	yes	no	0.532	0.434	0.275	2e-08
Q9WUQ2	417	Prolactin regulatory elem	yes	no	0.526	0.429	0.276	2e-08
Q5ZME8	513	WD40 repeat-containing pr	yes	no	0.485	0.321	0.247	1e-07
Q9HCU5	417	Prolactin regulatory elem	yes	no	0.538	0.438	0.257	2e-07
Q99M63	513	WD40 repeat-containing pr	no	no	0.485	0.321	0.235	4e-07
Q6NRT3	513	WD40 repeat-containing pr	N/A	no	0.485	0.321	0.235	4e-07
Q3UKJ7	513	WD40 repeat-containing pr	no	no	0.485	0.321	0.235	4e-07
Q2TAY7	513	WD40 repeat-containing pr	no	no	0.485	0.321	0.235	4e-07

>sp|Q8GYE0|PHF1_ARATH SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2

 Score =  450 bits (1157), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/324 (65%), Positives = 261/324 (80%), Gaps = 4/324 (1%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
           G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   
Sbjct: 11  GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71  DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250

Query: 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
           +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct: 251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query: 301 RVVLTASKEWGAMITKLTVPADWK 324
           RV+LT S EWG M+TKLTVP +WK
Sbjct: 311 RVMLTTSSEWGEMVTKLTVPKEWK 334

Involved in Pi uptake by facilitating the trafficking of PHT1-1/PHT1;1 from the endoplasmic reticulum to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39221|STLP2_ARATH SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 140/299 (46%), Gaps = 14/299 (4%)

Query: 35  SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG 94
           +V+ I   D  T S+   PL   V       P  +AV+P     +C+  N  CKLF    
Sbjct: 75  NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPNS-CKLFHWED 131

Query: 95  GATDINLLAKK----MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE 150
             +  +  A +    +  L+D G Q  L+F+ +GS  AAG  DG LR+  WPS+  +L+E
Sbjct: 132 IMSREDNQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVFKWPSMNTLLNE 191

Query: 151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
            +AH SV  + FS   +FL +       R+W      A   L++  DE    CRFS D  
Sbjct: 192 SQAHSSVKCLTFSESGQFLVSLGGP-VCRVWDVNASAAVASLSKEKDEMFASCRFSVDSA 250

Query: 211 KP---FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD 267
                ++    +RG   +    D   W +   K + +   S  ++S DGK LA+G+ +GD
Sbjct: 251 GNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSADGKLLAIGTLEGD 308

Query: 268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL 326
           + +++  +M+     K+ HLG   AL  F P  R +++ S +  A +T +    D  G+
Sbjct: 309 VLILESTRMQTIQVVKKAHLGLVTALT-FSPDSRGLVSVSFDSRARLTMIEQKGDKPGV 366

Required for the formation or budding of transport vesicles from the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9WTV0|PREB_RAT Prolactin regulatory element-binding protein OS=Rattus norvegicus GN=Preb PE=2 SV=2

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 19/200 (9%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEGEIGDLALGPDGK-LVTVG 214

Query: 174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSKDGTKP--FLFCTVQRGDKAL 225
            D  A +W+ +  V    W      + N+  + + CRF +   +P      TVQ   K L
Sbjct: 215 WDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLFTVQIPHKRL 274

Query: 226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                  L  +D ST+  +  +    +  S L++S  G +L +G+  G + +     ++ 
Sbjct: 275 RQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGLGTVTGSVAIYIAFSLQR 334

Query: 279 NHWSKRLHLGTSIALVEFCP 298
            ++ K  H G  +  V F P
Sbjct: 335 LYYVKEAH-GIVVTDVTFLP 353

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription. Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q9WUQ2|PREB_MOUSE Prolactin regulatory element-binding protein OS=Mus musculus GN=Preb PE=1 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 27/206 (13%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEGEIGDLTLGPDGK-LVTVG 214

Query: 174 TDGSARIWK----------TEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRG 221
            D  A +W+           E+G A    + N+  + + CRF +  D        TVQ  
Sbjct: 215 WDFKASVWQKDQLVTQLQWQENGPA----SSNTPYRYQACRFGQVPDQLGGLRLFTVQIP 270

Query: 222 DKAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK 274
            K L       L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +    
Sbjct: 271 HKRLRQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTVTGSVAIYIAF 330

Query: 275 KMEINHWSKRLHLGTSIALVEFCPTQ 300
            ++  ++ K  H G  +  V F P +
Sbjct: 331 SLQRLYYVKEAH-GIVVTDVTFLPEK 355

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Mus musculus (taxid: 10090)

>sp|Q5ZME8|SMU1_CHICK WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + V +VK  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKVWNVKTTECSNTFKSL 390

Gallus gallus (taxid: 9031)

>sp|Q9HCU5|PREB_HUMAN Prolactin regulatory element-binding protein OS=Homo sapiens GN=PREB PE=1 SV=2

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 19/202 (9%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTS 173
           QK + F+ D +  A GG DG++R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct: 157 QKVVCFNHDNTLLATGGTDGYVRVWKVPSLEKVL-EFKAHEGEIEDLALGPDGK-LVTVG 214

Query: 174 TDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKP--FLFCTVQRGDKAL 225
            D  A +W+ +  V       N      +  + + CRF +   +P      TVQ   K L
Sbjct: 215 RDLKASVWQKDQLVTQLHWQENGPTFSSTPYRYQACRFGQVPDQPAGLRLFTVQIPHKRL 274

Query: 226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                  L  +D S +  +  K    +  S L +S  G +L +G+  G + +     ++ 
Sbjct: 275 RQPPPCYLTAWDGSNFLPLRTKSCGHEVVSCLDVSESGTFLGLGTVTGSVAIYIAFSLQC 334

Query: 279 NHWSKRLHLGTSIALVEFCPTQ 300
            ++ +  H G  +  V F P +
Sbjct: 335 LYYVREAH-GIVVTDVAFLPEK 355

Was first identified based on its probable role in the regulation of pituitary gene transcription. Binds to the prolactin gene (PRL) promoter and seems to activate transcription (By similarity). Guanine nucleotide exchange factor that activates SARA2. Required for the formation of COPII transport vesicles from the ER.

Homo sapiens (taxid: 9606)

>sp|Q99M63|SMU1_RAT WD40 repeat-containing protein SMU1 OS=Rattus norvegicus GN=Smu1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Rattus norvegicus (taxid: 10116)

>sp|Q6NRT3|SMU1_XENLA WD40 repeat-containing protein SMU1 OS=Xenopus laevis GN=smu1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Xenopus laevis (taxid: 8355)

>sp|Q3UKJ7|SMU1_MOUSE WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Mus musculus (taxid: 10090)

>sp|Q2TAY7|SMU1_HUMAN WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 13/178 (7%)

Query: 116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMD-------FSLDSE 167
           +C  FS DG     G VDG + + ++ + +I  D + +A  + + MD       FS D+E
Sbjct: 218 ECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTE 277

Query: 168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA 227
            LAT + DG  ++WK + G       R   + +    FSKD ++      +       + 
Sbjct: 278 MLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFSKDSSQ-----ILSASFDQTIR 332

Query: 228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
           ++ + +   +   R      +  + + DG Y+   S DG + + ++K  E ++  K L
Sbjct: 333 IHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSL 390

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
356535527	394	PREDICTED: SEC12-like protein 1-like [Gl	0.961	0.829	0.752	1e-146
356576347	394	PREDICTED: SEC12-like protein 1-like [Gl	0.961	0.829	0.740	1e-144
224113177	385	predicted protein [Populus trichocarpa]	0.961	0.849	0.738	1e-143
388521319	390	unknown [Lotus japonicus]	0.941	0.820	0.743	1e-142
225448865	391	PREDICTED: SEC12-like protein 1-like [Vi	0.961	0.836	0.732	1e-142
217073440	392	unknown [Medicago truncatula]	0.961	0.834	0.697	1e-135
449441826	393	PREDICTED: SEC12-like protein 1-like [Cu	0.941	0.814	0.690	1e-133
449522724	393	PREDICTED: LOW QUALITY PROTEIN: SEC12-li	0.941	0.814	0.684	1e-131
255584376	303	nucleotide binding protein, putative [Ri	0.885	0.993	0.734	1e-128
297819930	397	hypothetical protein ARALYDRAFT_485583 [	0.941	0.806	0.651	1e-125

>gi|356535527|ref|XP_003536296.1| PREDICTED: SEC12-like protein 1-like [Glycine max]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/327 (75%), Positives = 287/327 (87%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R SS PS+LEIFSFDPKTTS+ TSPL TYV +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSRRGSSCPSLLEIFSFDPKTTSLSTSPLTTYVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ I V+PSGDDFVC+ +NG CKLFE+YG  T++ LLAK++ PLQ  GPQKC+SFSVDG
Sbjct: 70  DPVAITVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCISFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG+DGHLRIM WPS+R+ILDEP+AH SV DMDFSLDSEFLA+TSTDGSARIWKTE
Sbjct: 130 SKFAAGGMDGHLRIMEWPSMRVILDEPRAHNSVQDMDFSLDSEFLASTSTDGSARIWKTE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV    L+RNSDEKIELCRFSKDGTKPFLFC+VQ+GD ++ AVYDISTWNKIGHKRL+R
Sbjct: 190 DGVPLNTLSRNSDEKIELCRFSKDGTKPFLFCSVQKGDTSVTAVYDISTWNKIGHKRLIR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           K ASV+SIS DGKYL++GSKDGDICVV+VKKM+I H+SKRLHLGT+IA +EFCP +RVVL
Sbjct: 250 KSASVMSISNDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIASLEFCPGERVVL 309

Query: 305 TASKEWGAMITKLTVPADWKGLSLPLL 331
           T S EWGA++TKLTVP DWK   + L+
Sbjct: 310 TTSVEWGALVTKLTVPKDWKEWQIYLV 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576347|ref|XP_003556294.1| PREDICTED: SEC12-like protein 1-like [Glycine max]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/327 (74%), Positives = 287/327 (87%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R +S PS+LEIFSFDPKTTS+ T PL TYV +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSRRGNSCPSLLEIFSFDPKTTSLSTCPLTTYVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ IAV+PSGDDFVC+ +NG CKLFE+YG  T++ LLAK++ PLQ  GPQKC++FSVDG
Sbjct: 70  DPVAIAVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCIAFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG+DGHLRIM WPS+R+ILDEP+AHKSV DMDFSLDSEFLA+TSTDGSARIWK E
Sbjct: 130 SKFAAGGLDGHLRIMEWPSMRVILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKIE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFS DGTKPFLFC+VQ+GD ++ AVY+ISTWNKIGHKRL+R
Sbjct: 190 DGVPLTTLSRNSDEKIELCRFSMDGTKPFLFCSVQKGDTSVTAVYEISTWNKIGHKRLIR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           K ASV+SIS DGKYL++GSKDGDICVV+VKKM+I H+SKRLHLGT+IA +EFCP +RV+L
Sbjct: 250 KSASVMSISHDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIAYLEFCPGERVLL 309

Query: 305 TASKEWGAMITKLTVPADWKGLSLPLL 331
           T S EWGA++TKLTVP DWK   + L+
Sbjct: 310 TTSVEWGALVTKLTVPKDWKEWQIYLV 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113177|ref|XP_002316416.1| predicted protein [Populus trichocarpa] gi|222865456|gb|EEF02587.1| predicted protein [Populus trichocarpa]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/329 (73%), Positives = 286/329 (86%), Gaps = 2/329 (0%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSS--RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES 62
           GTVTCGSWI+RPEN+NLVVLGKSS  R S+S SVLEIFSFDP+T S+  SP VTYVF+E+
Sbjct: 3   GTVTCGSWIRRPENLNLVVLGKSSKKRESASRSVLEIFSFDPQTASLSNSPQVTYVFEET 62

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV 122
           EG+P+TIAV+P+GDDFVCST+ GGCKL E+ G  T++ LLAK++PPLQD GPQ C++FSV
Sbjct: 63  EGEPVTIAVHPNGDDFVCSTSKGGCKLLELSGQETNLKLLAKELPPLQDVGPQNCMAFSV 122

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
           DGS+FA GGV+G +RI+ WPSLRIILDE KAH SV DMDFSLDSEFLA+TSTDGSARIWK
Sbjct: 123 DGSKFATGGVEGRVRILKWPSLRIILDEAKAHNSVRDMDFSLDSEFLASTSTDGSARIWK 182

Query: 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
            EDG A   LTRNSDEKIELCRFSKDGTKPFLFC VQ+GDKA+ +VYDISTW KIG+KRL
Sbjct: 183 AEDGSAVATLTRNSDEKIELCRFSKDGTKPFLFCAVQKGDKAVTSVYDISTWKKIGYKRL 242

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302
           LRKPA+++SISLDGKYLA+GSKDGD+CV +VK ME++H S+RLHLGT I  +EFCP+QRV
Sbjct: 243 LRKPAAIMSISLDGKYLALGSKDGDVCVAEVKTMEVSHLSRRLHLGTCITSLEFCPSQRV 302

Query: 303 VLTASKEWGAMITKLTVPADWKGLSLPLL 331
           VLT S EWGA++TKL VPADWK   + L+
Sbjct: 303 VLTTSNEWGAVVTKLNVPADWKEWQIYLV 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521319|gb|AFK48721.1| unknown [Lotus japonicus]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 238/320 (74%), Positives = 280/320 (87%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPENVNL VLG+S R  S PS+L+IFSFDP TTS++TSPL T+V +  EG
Sbjct: 10  GPVTCGSWIRRPENVNLAVLGRSRRGDSCPSLLQIFSFDPNTTSLFTSPLATFVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           DP+ IAV+PSGDDF+CS +NG CKLFE+YG   ++ L+AK++ PLQ  GPQKC++FSVDG
Sbjct: 70  DPIAIAVHPSGDDFLCSLSNGSCKLFELYGHDKNMKLMAKELAPLQGIGPQKCITFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAG +DGHLRIM WPS+R+ILDEPKAHKSV DMDFSLDSEFLA+TSTDGSAR WK E
Sbjct: 130 SKFAAGALDGHLRIMEWPSMRMILDEPKAHKSVRDMDFSLDSEFLASTSTDGSARTWKIE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFSKDGTKPFLF +VQ+GDK+  AV+D+STWNKIGHKRLLR
Sbjct: 190 DGVPLTTLSRNSDEKIELCRFSKDGTKPFLFGSVQKGDKSFTAVWDMSTWNKIGHKRLLR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           K ASV+SIS DGKYL+MGSKDGDICVV++KKM+I+H+SKRLHLGT+IA +EFCPT+RVVL
Sbjct: 250 KSASVMSISHDGKYLSMGSKDGDICVVEIKKMQIHHYSKRLHLGTNIATLEFCPTERVVL 309

Query: 305 TASKEWGAMITKLTVPADWK 324
           T S EWGA +TKL VP DWK
Sbjct: 310 TTSIEWGAQVTKLNVPKDWK 329

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448865|ref|XP_002262948.1| PREDICTED: SEC12-like protein 1-like [Vitis vinifera]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/329 (73%), Positives = 282/329 (85%), Gaps = 2/329 (0%)

Query: 3   GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES 62
           GGG+V C +WI+RPEN+NLV++ +S R +SSP+VLEIFSFDP TTS+ +SPL TYV +E 
Sbjct: 4   GGGSVACAAWIRRPENLNLVIICRSGRRNSSPAVLEIFSFDPMTTSLSSSPLATYVLEE- 62

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV 122
            GDPM +AV+PSGD+ VCSTT G CKLFE+Y    +I LLAKK+  L+  GPQKCL+FSV
Sbjct: 63  -GDPMAVAVHPSGDELVCSTTTGDCKLFELYAQEGNIKLLAKKLNALEGVGPQKCLAFSV 121

Query: 123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK 182
           +GSRFA GGVDGHLRI+ WPS++IILDEP+AH S  DMDFSLD+EFLA+TSTDGSARIWK
Sbjct: 122 EGSRFATGGVDGHLRILEWPSMQIILDEPRAHNSFRDMDFSLDTEFLASTSTDGSARIWK 181

Query: 183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
             DGV  T LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA+ AV+DISTWNKIGHKRL
Sbjct: 182 INDGVPLTTLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAVTAVWDISTWNKIGHKRL 241

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV 302
           L+KPASV+S+SLDGKYLA+GSKDGD+CVV+VKKMEI HWSKRLHLGT IA +EFCP +RV
Sbjct: 242 LKKPASVMSMSLDGKYLALGSKDGDVCVVEVKKMEICHWSKRLHLGTCIAALEFCPRERV 301

Query: 303 VLTASKEWGAMITKLTVPADWKGLSLPLL 331
           VLT S EWGA++TKL V ADWK   + +L
Sbjct: 302 VLTTSVEWGAVVTKLNVAADWKEWQIYML 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073440|gb|ACJ85079.1| unknown [Medicago truncatula]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 228/327 (69%), Positives = 277/327 (84%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G VTCGSWI+RPEN+NLVVLG+S R +S P++L+IFSFDP T S+ TSPL  +V +  EG
Sbjct: 10  GPVTCGSWIRRPENLNLVVLGRSKRGNSCPALLQIFSFDPITVSLSTSPLTNFVLEAEEG 69

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D + IAV+PSGDDF+CS +NG CKLFE+YG   ++ LLAK++ PLQ    Q C++FSVDG
Sbjct: 70  DLVAIAVHPSGDDFMCSLSNGSCKLFELYGHEANMKLLAKELTPLQGICSQTCITFSVDG 129

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+FAAGG DGHLRIM WPS+RIILDEP+AHKSV DMDFSLDSEFLA+TSTDGSARIWK E
Sbjct: 130 SKFAAGGSDGHLRIMEWPSMRIILDEPRAHKSVRDMDFSLDSEFLASTSTDGSARIWKVE 189

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T L+RNSDEKIELCRFSK GTKPFLF  VQ+GDK+L AV+D+S+WNKIGHKRLLR
Sbjct: 190 DGVPVTTLSRNSDEKIELCRFSKGGTKPFLFGAVQKGDKSLTAVWDMSSWNKIGHKRLLR 249

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           K AS +++S DGKYL++ SKDGDICVV+VKKM+I+H+SKRLHLGT+IA ++FCP++RVVL
Sbjct: 250 KSASAMAVSHDGKYLSLASKDGDICVVEVKKMQIHHYSKRLHLGTTIATLDFCPSERVVL 309

Query: 305 TASKEWGAMITKLTVPADWKGLSLPLL 331
           T S EWGA++TKL VP DWK   + L+
Sbjct: 310 TTSVEWGALVTKLNVPKDWKEWQIYLV 336

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441826|ref|XP_004138683.1| PREDICTED: SEC12-like protein 1-like [Cucumis sativus]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 221/320 (69%), Positives = 271/320 (84%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G ++CGSWI+RPENVNL ++G+S    SSPS LEIFSFDPK TS+ +SPL  + F+E +G
Sbjct: 9   GPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDG 68

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D +++ V+PSGD+ VCSTT GGCKLFE+ G   ++ LL K++P L+D GPQ CL+FSVDG
Sbjct: 69  DLVSVTVHPSGDEIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDG 128

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+ A GGVDGHLRI  WPSLR ILDEP A KSV DMDFSLDSEFLA+TS+DGSAR+WKT+
Sbjct: 129 SKLATGGVDGHLRIFEWPSLRPILDEPNAQKSVRDMDFSLDSEFLASTSSDGSARVWKTD 188

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T LTRN+DEKIELCRFSKDGTKPFLFCTVQ+G+KA+ AV+DIS W +IG+KRLLR
Sbjct: 189 DGVPITTLTRNTDEKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKRIGYKRLLR 248

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           KPA ++SIS DGKYLA+GSKDGD+CV +VKKME++H SKRLHLGT I  ++FCP++RV+L
Sbjct: 249 KPACIMSISRDGKYLALGSKDGDVCVAEVKKMEVSHMSKRLHLGTPIKTLDFCPSERVIL 308

Query: 305 TASKEWGAMITKLTVPADWK 324
           T+S EWGA++TKL VPADWK
Sbjct: 309 TSSVEWGALVTKLNVPADWK 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522724|ref|XP_004168376.1| PREDICTED: LOW QUALITY PROTEIN: SEC12-like protein 1-like [Cucumis sativus]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 219/320 (68%), Positives = 269/320 (84%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG 64
           G ++CGSWI+RPENVNL ++G+S    SSPS LEIFSFDPK TS+ +SPL  + F+E +G
Sbjct: 9   GPLSCGSWIRRPENVNLALIGRSRPPDSSPSTLEIFSFDPKVTSLSSSPLTEFAFEECDG 68

Query: 65  DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG 124
           D +++ V+PSGD+ VCSTT GGCKLFE+ G   ++ LL K++P L+D GPQ CL+FSVDG
Sbjct: 69  DLVSVTVHPSGDEIVCSTTRGGCKLFELCGQELNVKLLIKELPSLKDVGPQSCLTFSVDG 128

Query: 125 SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE 184
           S+ A GGVDGHLRI  WPSLR ILDEP A KSV DMDFSLDSEFLA+TS+DGSAR+WKT+
Sbjct: 129 SKLATGGVDGHLRIFEWPSLRPILDEPNAQKSVRDMDFSLDSEFLASTSSDGSARVWKTD 188

Query: 185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR 244
           DGV  T LTR+S  KIELCRFSKDGTKPFLFCTVQ+G+KA+ AV+DIS W +IG+KRLLR
Sbjct: 189 DGVPITTLTRSSGXKIELCRFSKDGTKPFLFCTVQKGEKAVTAVWDISNWKRIGYKRLLR 248

Query: 245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL 304
           KPA ++SIS DGKYLA+GSKDGD+CV +VKKME++H SKRLHLGT I  ++FCP++RV+L
Sbjct: 249 KPACIMSISRDGKYLALGSKDGDVCVAEVKKMEVSHMSKRLHLGTPIKTLDFCPSERVIL 308

Query: 305 TASKEWGAMITKLTVPADWK 324
           T+S EWGA++TKL VPADWK
Sbjct: 309 TSSVEWGALVTKLNVPADWK 328

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584376|ref|XP_002532922.1| nucleotide binding protein, putative [Ricinus communis] gi|223527315|gb|EEF29464.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/301 (73%), Positives = 256/301 (85%)

Query: 1   MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
             G G VTCGSWI+R +NVNLVVLGKS  ++SS SVL+IFSFDP TTS+  SPL +YV +
Sbjct: 3   QRGRGIVTCGSWIRRSDNVNLVVLGKSRTSNSSSSVLDIFSFDPITTSLAPSPLASYVLE 62

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           E+EGD + IAV+PSGDDF+CSTT GGCKLFE++G  T++ LLAK++PPLQD G QKCL F
Sbjct: 63  ETEGDVVAIAVHPSGDDFICSTTKGGCKLFELHGQETNLKLLAKELPPLQDVGTQKCLVF 122

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           SVDGSRFA+GGVDGHLRI+ WPS RII DE +AHKS  DMD SLDS FLA+TSTDGSARI
Sbjct: 123 SVDGSRFASGGVDGHLRILEWPSQRIIADERRAHKSFRDMDISLDSAFLASTSTDGSARI 182

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           W  EDG   T +TRNSDEKIELCRFSKDGTKPFLFC VQRGDKA  AVYDISTW KIG+K
Sbjct: 183 WNVEDGAPLTTVTRNSDEKIELCRFSKDGTKPFLFCAVQRGDKATTAVYDISTWKKIGYK 242

Query: 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
           RLL+KPA ++S+SLDGKYLA+GSKDGDICV +VKKME++HWS+RLHLGT I  +EFCP+Q
Sbjct: 243 RLLKKPACIMSVSLDGKYLALGSKDGDICVAEVKKMEVSHWSRRLHLGTCITSLEFCPSQ 302

Query: 301 R 301
           R
Sbjct: 303 R 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819930|ref|XP_002877848.1| hypothetical protein ARALYDRAFT_485583 [Arabidopsis lyrata subsp. lyrata] gi|297323686|gb|EFH54107.1| hypothetical protein ARALYDRAFT_485583 [Arabidopsis lyrata subsp. lyrata]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/324 (65%), Positives = 263/324 (81%), Gaps = 4/324 (1%)

Query: 5   GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
           G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   
Sbjct: 11  GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPVTASLSSSPLATHTLK 70

Query: 61  ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
           ES+GDP+T++V+P+GD FVCST+ GGCK FE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct: 71  ESDGDPVTVSVHPAGDYFVCSTSKGGCKSFEIVGGATGITILAKELLPLQNAGLQKCMAF 130

Query: 121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
           S DGS+ AAGG+DG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct: 131 SFDGSKLAAGGLDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query: 181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
           WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  L+ VYDISTW K+G K
Sbjct: 191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPLVNVYDISTWKKLGFK 250

Query: 241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
           +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct: 251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query: 301 RVVLTASKEWGAMITKLTVPADWK 324
           RV+LT S EWG M+TKL+VP +W+
Sbjct: 311 RVMLTTSSEWGEMVTKLSVPKEWR 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2083850	398	PHF1 "AT3G52190" [Arabidopsis	0.941	0.804	0.657	1e-116
TAIR|locus:2159697	383	AT5G50550 "AT5G50550" [Arabido	0.835	0.741	0.316	1.5e-33
TAIR|locus:2832497	383	AT5G50650 "AT5G50650" [Arabido	0.835	0.741	0.316	1.5e-33
TAIR|locus:2049582	393	STL2P "AT2G01470" [Arabidopsis	0.873	0.755	0.310	7.9e-30
MGI|MGI:1355326	417	Preb "prolactin regulatory ele	0.532	0.434	0.28	6e-09
RGD|61929	417	Preb "prolactin regulatory ele	0.529	0.431	0.283	1e-08
UNIPROTKB|E2RBH1	418	PREB "Uncharacterized protein"	0.570	0.464	0.286	2.2e-08
UNIPROTKB|F1SED4	415	PREB "Uncharacterized protein"	0.523	0.428	0.280	1.8e-07
TAIR|locus:2012971	407	AT1G71840 "AT1G71840" [Arabido	0.741	0.619	0.267	2.2e-07
UNIPROTKB|E1BL12	418	PREB "Uncharacterized protein"	0.523	0.425	0.285	2.3e-07

TAIR|locus:2083850 PHF1 "AT3G52190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1150 (409.9 bits), Expect = 1.0e-116, P = 1.0e-116
 Identities = 213/324 (65%), Positives = 261/324 (80%)

Query:     5 GTVTCGSWIKRPENVNLVVLGKSS--RASS--SPSVLEIFSFDPKTTSVYTSPLVTYVFD 60
             G V CGSWI+RP+ VN V++ K+S  R SS  SP++L IFSFDP T S+ +SPL T+   
Sbjct:    11 GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLK 70

Query:    61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF 120
             +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++F
Sbjct:    71 DSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAF 130

Query:   121 SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI 180
             S DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDFSLDSEFLATTSTDGSARI
Sbjct:   131 SFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDFSLDSEFLATTSTDGSARI 190

Query:   181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK 240
             WK EDG   + L R+ DE IELCRFSKDGTKPFLFC  QRGD  ++ VYDISTW K+G K
Sbjct:   191 WKAEDGFPLSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFK 250

Query:   241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ 300
             +L RK AS +++SLDGKY+A+G KDGD+ V +VK MEI H+SKRLHLG SIA +EFCP++
Sbjct:   251 KLSRKTASTMAVSLDGKYIALGGKDGDVSVAEVKTMEIYHYSKRLHLGQSIASLEFCPSE 310

Query:   301 RVVLTASKEWGAMITKLTVPADWK 324
             RV+LT S EWG M+TKLTVP +WK
Sbjct:   311 RVMLTTSSEWGEMVTKLTVPKEWK 334

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006817 "phosphate ion transport" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;IMP

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2159697 AT5G50550 "AT5G50550" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 94/297 (31%), Positives = 146/297 (49%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G     S  P+V+ I   D  T S+   P+   V       P  +A++P     +C+  N
Sbjct:    56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113

Query:    85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
               C+LF+      D N     K +  L+D G Q  LSF+ DG+  A G  DG LR+  WP
Sbjct:   114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172

Query:   143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
             S++ +L+E K H SV  + FS   +FL +       R+W      A   L++  DE    
Sbjct:   173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231

Query:   203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
             CRFS D  G++  ++    QRG   +   +D ++W +   K + R  + S  ++S DGK 
Sbjct:   232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289

Query:   259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315
             LA+G+ +GD+ ++D  KM+ N   K+ HLG   AL  F P  R +++ S +  A +T
Sbjct:   290 LAVGTLEGDVLIIDSTKMQTNQIVKKAHLGLVTALT-FSPDSRCLVSVSFDSRARLT 345

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2832497 AT5G50650 "AT5G50650" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 94/297 (31%), Positives = 146/297 (49%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G     S  P+V+ I   D  T S+   P+   V       P  +A++P     +C+  N
Sbjct:    56 GGGEGRSGIPNVILICRVDLHTNSLSEQPIGRRVIGTDL--PYRMAIHPRQGGLICALPN 113

Query:    85 GGCKLFEVYGGATDINL--LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP 142
               C+LF+      D N     K +  L+D G Q  LSF+ DG+  A G  DG LR+  WP
Sbjct:   114 S-CRLFDWENIIEDDNEEESEKVVKELKDVGQQLSLSFNQDGTVLATGAEDGTLRVFEWP 172

Query:   143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL 202
             S++ +L+E K H SV  + FS   +FL +       R+W      A   L++  DE    
Sbjct:   173 SMKTLLNESKTHASVKSLTFSESGKFLVSLGAP-LCRVWDVNASAAIASLSKEKDEMFAS 231

Query:   203 CRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKY 258
             CRFS D  G++  ++    QRG   +   +D ++W +   K + R  + S  ++S DGK 
Sbjct:   232 CRFSVDNSGSEVLYVAANTQRGGSII--TWDTTSWRRRSSKLIKRNNSISAFNVSADGKL 289

Query:   259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315
             LA+G+ +GD+ ++D  KM+ N   K+ HLG   AL  F P  R +++ S +  A +T
Sbjct:   290 LAVGTLEGDVLIIDSTKMQTNQIVKKAHLGLVTALT-FSPDSRCLVSVSFDSRARLT 345

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049582 STL2P "AT2G01470" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 98/316 (31%), Positives = 149/316 (47%)

Query:    25 GKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN 84
             G   R+  S +V+ I   D  T S+   PL   V       P  +AV+P     +C+  N
Sbjct:    66 GGEGRSGIS-NVILICRVDLNTNSLSEQPLGRLVVGSDL--PYRMAVHPREGGLICALPN 122

Query:    85 GGCKLF--EVYGGATDINLLAKK---MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM 139
               CKLF  E      D N   +    +  L+D G Q  L+F+ +GS  AAG  DG LR+ 
Sbjct:   123 S-CKLFHWEDIMSRED-NQAGESEEVIKELRDVGQQLALAFNPEGSVLAAGAEDGTLRVF 180

Query:   140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA-RIWKTEDGVAWTFLTRNSDE 198
              WPS+  +L+E +AH SV  + FS   +FL   S  G   R+W      A   L++  DE
Sbjct:   181 KWPSMNTLLNESQAHSSVKCLTFSESGQFLV--SLGGPVCRVWDVNASAAVASLSKEKDE 238

Query:   199 KIELCRFSKD--GTKP-FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD 255
                 CRFS D  G +  ++    +RG   +    D   W +   K + +   S  ++S D
Sbjct:   239 MFASCRFSVDSAGNEVLYIAANTERGGSIITC--DTKLWKRKWSKPIKKNSISAFNVSAD 296

Query:   256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT 315
             GK LA+G+ +GD+ +++  +M+     K+ HLG   AL  F P  R +++ S +  A +T
Sbjct:   297 GKLLAIGTLEGDVLILESTRMQTIQVVKKAHLGLVTALT-FSPDSRGLVSVSFDSRARLT 355

Query:   316 KLTVPADWKGLSLPLL 331
              +    D  G+   LL
Sbjct:   356 MIEQKGDKPGVRWWLL 371

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA;TAS

GO:0043090 "amino acid import" evidence=RCA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

MGI|MGI:1355326 Preb "prolactin regulatory element binding" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 56/200 (28%), Positives = 90/200 (45%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct:   157 QKVVCFNHDNTLLATGGTDGHVRVWKVPSLEKVL-EFKAHEGEIGDLTLGPDGK-LVTVG 214

Query:   174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKAL 225
              D  A +W+ +  V    W      + N+  + + CRF +  D        TVQ   K L
Sbjct:   215 WDFKASVWQKDQLVTQLQWQENGPASSNTPYRYQACRFGQVPDQLGGLRLFTVQIPHKRL 274

Query:   226 -------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI 278
                    L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     ++ 
Sbjct:   275 RQPPPCYLTAWDSSTFLPLRTRSCGHEVISCLSVSDSGTFLGLGTVTGSVAIYIAFSLQR 334

Query:   279 NHWSKRLHLGTSIALVEFCP 298
              ++ K  H G  +  V F P
Sbjct:   335 LYYVKEAH-GIVVTDVTFLP 353

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

RGD|61929 Preb "prolactin regulatory element binding" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 57/201 (28%), Positives = 93/201 (46%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DGH+R+   PSL  +L E KAH+  + D+    D + L T  
Sbjct:   157 QKVVCFNHDNTLLATGGSDGHVRVWKVPSLEKVL-EFKAHEGEIGDLALGPDGK-LVTVG 214

Query:   174 TDGSARIWKTEDGVA---WTF---LTRNSDEKIELCRFSKDGTKPF---LFCTVQRGDKA 224
              D  A +W+ +  V    W      + N+  + + CRF +   +P    LF TVQ   K 
Sbjct:   215 WDFKASVWQKDQLVTQLQWQENGPTSSNTPYRYQACRFGQVPDQPGGLRLF-TVQIPHKR 273

Query:   225 L-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME 277
             L       L  +D ST+  +  +    +  S L++S  G +L +G+  G + +     ++
Sbjct:   274 LRQPPPCYLTAWDSSTFLPLQTRSCGHEVISCLTVSESGTFLGLGTVTGSVAIYIAFSLQ 333

Query:   278 INHWSKRLHLGTSIALVEFCP 298
               ++ K  H G  +  V F P
Sbjct:   334 RLYYVKEAH-GIVVTDVTFLP 353

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RBH1 PREB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 64/223 (28%), Positives = 102/223 (45%)

Query:    99 INLLAKKMPPLQ-DAGP---QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH 154
             I L  + +  +Q D  P   QK + F+ D +  A GG DG++RI   PSL  +L E +AH
Sbjct:   138 IELSVENLKAVQTDFSPDPFQKVVCFNHDNTLLATGGTDGYVRIWKVPSLEKVL-EFRAH 196

Query:   155 KSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRF 205
             +  ++ D +L  +  L T   D  A +W+ +  V    W     TF   N+  + + CRF
Sbjct:   197 EGEIE-DLALGPDGKLVTVGWDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRF 253

Query:   206 SKDGTKPF---LFCTVQRGDKAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLD 255
                  +P    LF TVQ   K L       L  +D ST+  +  K    +  S LS+S  
Sbjct:   254 GHVPDQPTRLRLF-TVQIPHKRLRQPPPCYLTAWDGSTFLPLRTKSCGHEVISCLSVSES 312

Query:   256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP 298
             G +L +G+  G + +     ++  ++ +  H G  +  V F P
Sbjct:   313 GTFLGLGTVTGSVAIYIAFSLQCLYYVREAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1SED4 PREB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 57/203 (28%), Positives = 93/203 (45%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTS 173
             QK + F+ D +  A GG DG++R+   P+L  +L E +AH+  + D+    D + L T  
Sbjct:   158 QKVVRFNHDATLLATGGTDGYVRVWKVPTLEKVL-EFRAHEGEIEDLAVGPDGK-LVTVG 215

Query:   174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
              D  A +W+ +  V    W     TF   N+  + + CRF     +P    LF TVQ   
Sbjct:   216 RDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRFGPVPDQPAGLRLF-TVQIPH 272

Query:   223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
             K L       L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     
Sbjct:   273 KRLRQPPPCYLTAWDGSTFLPLRTRSCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFS 332

Query:   276 MEINHWSKRLHLGTSIALVEFCP 298
             ++  ++ K  H G  +  V F P
Sbjct:   333 LQRLYYVKEAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

TAIR|locus:2012971 AT1G71840 "AT1G71840" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 76/284 (26%), Positives = 123/284 (43%)

Query:    42 FDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL 101
             FD    SV+T       F   +G+   +A +P+ D  + +T  G  K F    G  D   
Sbjct:    56 FDENDDSVHT-------FTGHKGELYALACSPT-DATLVATGGGDDKAFLWKIGNGD--- 104

Query:   102 LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--LRIILDEPKAHKSVLD 159
              A ++P  +D+    CL+FS DG   A+GG+DG ++I    S  L+ +LD P A   +  
Sbjct:   105 WAAELPGHKDS--VSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDGPGA--GIEW 160

Query:   160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ 219
             + +      +   S D S  +W   D  A+  +    +  +    F+ DG    L CT  
Sbjct:   161 VRWHPRGHIVLAGSEDCSLWMWNA-DKEAYLNMFSGHNLNVTCGDFTPDGK---LICT-- 214

Query:   220 RGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
               D A L V++  T   I    GH     +  + L I+ +      GSKDG + +V++  
Sbjct:   215 GSDDASLIVWNPKTCESIHIVKGHP-YHTEGLTCLDINSNSSLAISGSKDGSVHIVNIVT 273

Query:   276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV 319
              ++   S   H   S+  V+F P+   +  A+   G M  KL +
Sbjct:   274 GKVVS-SLNSHTD-SVECVKFSPSSATIPLAAT--GGMDKKLII 313

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|E1BL12 PREB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 58/203 (28%), Positives = 94/203 (46%)

Query:   115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTS 173
             QK + F+ D +  A GG DG +R+   P+L  +L E KAH+  ++ D +L  +  L T  
Sbjct:   158 QKVVCFNHDNTLLATGGTDGCVRVWKVPTLEKVL-EFKAHEGEIE-DLALGPDGKLVTVG 215

Query:   174 TDGSARIWKTEDGVA---W-----TFLTRNSDEKIELCRFSKDGTKPF---LFCTVQRGD 222
              D  A +W+ +  V    W     TF   N+  + + CRF +   +P    LF TVQ   
Sbjct:   216 WDLKASVWQKDQLVTQLHWQENGPTF--SNTPYRYQACRFGQVPDQPAGLRLF-TVQIPH 272

Query:   223 KAL-------LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
             K L       L  +D ST+  +  +    +  S LS+S  G +L +G+  G + +     
Sbjct:   273 KRLRQPPPCYLTAWDGSTFLPLRTRPCGHEVISCLSVSESGTFLGLGTVTGSVAIYIAFS 332

Query:   276 MEINHWSKRLHLGTSIALVEFCP 298
             ++  ++ K  H G  +  V F P
Sbjct:   333 LQRLYYVKEAH-GIVVTDVAFLP 354

GO:0005783 "endoplasmic reticulum" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYE0	PHF1_ARATH	No assigned EC number	0.6512	0.9411	0.8040	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-08
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003
smart00320	40	smart00320, WD40, WD40 repeats	0.004

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.4 bits (137), Expect = 4e-09
 Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 11/198 (5%)

Query: 116 KCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTS 173
             L+FS DG   A+G  +DG +++    + + +         V  + FS D    +A+ S
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218

Query: 174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST 233
           +DG+ R+W    G      T +      +  FS DG+   L           + ++D+ +
Sbjct: 219 SDGTIRLWDLSTG-KLLRSTLSGHSDSVVSSFSPDGS--LLASG---SSDGTIRLWDLRS 272

Query: 234 WNKIGHKRLLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI 291
            + +  + L    +SVLS++   DGK LA GS DG + + D++  ++            +
Sbjct: 273 SSSL-LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331

Query: 292 ALVEFCPTQRVVLTASKE 309
           + + F P   ++++   +
Sbjct: 332 SSLSFSPDGSLLVSGGSD 349

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 5e-09
 Identities = 66/285 (23%), Positives = 105/285 (36%), Gaps = 23/285 (8%)

Query: 32  SSPSVLEIFSFDPKTTSVY---TSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGC 87
              S+L   S    T  ++   T   +    +       ++A +P G      S+ +G  
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180

Query: 88  KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRI 146
           KL+++  G     L     P          L+FS DG    A    DG +R+    + ++
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVS-------SLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233

Query: 147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS 206
           +      H   +   FS D   LA+ S+DG+ R+W      +           +    FS
Sbjct: 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293

Query: 207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMG-S 263
            DG            D   + ++D+ T   +    L     P S LS S DG  L  G S
Sbjct: 294 PDGK----LLASGSSDGT-VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 264 KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK 308
            DG I + D++        K L   +++  V F P  RVV + S 
Sbjct: 349 DDGTIRLWDLRT---GKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 18/170 (10%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTD 175
           C++FS DG   A G  DG +++    +  ++    K H   V D+  S D  +LA+ S+D
Sbjct: 14  CVAFSPDGKLLATGSGDGTIKVWDLETGELLR-TLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 176 GSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW 234
            + R+W  E G    T     S   +    FS DG    L  +    DK  + V+D+ T 
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSY--VSSVAFSPDG--RILSSS--SRDKT-IKVWDVETG 125

Query: 235 NKI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
             +    GH        + ++ S DG ++A  S+DG I + D++  +   
Sbjct: 126 KCLTTLRGHT----DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 12/162 (7%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            ++FS DG   ++   D  +++    + + +         V  + FS D  F+A++S DG
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157

Query: 177 SARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN 235
           + ++W    G    T      +  +    FS DG K  L  +    D  +  ++D+ST  
Sbjct: 158 TIKLWDLRTGKCVATLTGHTGE--VNSVAFSPDGEK-LLSSS---SDGTIK-LWDLSTGK 210

Query: 236 KIGHKRLLRKPASVLSI--SLDGKYLAMGSKDGDICVVDVKK 275
            +    L      V S+  S DG  LA GS+DG I V D++ 
Sbjct: 211 CL--GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 5e-08
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 20/202 (9%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-----DEPKAHKSVLDMDFSLDSEFLAT 171
            ++FS DG    +G  DG +++    +   ++         +   +       +S  LA+
Sbjct: 70  SIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS 129

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
           +S DG+ ++W                E +    FS DG                + ++D+
Sbjct: 130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS----SLDGTIKLWDL 185

Query: 232 STWNKI----GHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLH 286
            T   +    GH      P S L+ S DG  L    S DG I + D+   ++   +   H
Sbjct: 186 RTGKPLSTLAGHTD----PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 287 LGTSIALVEFCPTQRVVLTASK 308
             + ++   F P   ++ + S 
Sbjct: 242 SDSVVSS--FSPDGSLLASGSS 261

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 21/163 (12%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
           K H   V  + FS D + LAT S DG+ ++W  E G     L  ++   +     S DGT
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGT 64

Query: 211 KPFLFCTVQRGDKALLAVYDISTWNKI----GHKRLLRKPASVLSISL--DGKYLAMGSK 264
             +L           + ++D+ T   +    GH       + V S++   DG+ L+  S+
Sbjct: 65  --YLASG---SSDKTIRLWDLETGECVRTLTGHT------SYVSSVAFSPDGRILSSSSR 113

Query: 265 DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307
           D  I V DV+  +    + R H    +  V F P    V ++S
Sbjct: 114 DKTIKVWDVETGKCLT-TLRGHTD-WVNSVAFSPDGTFVASSS 154

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
                  G+  ++A +P G+  + S+++G  KL+++  G     L   +           
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN------- 223

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            ++FS DG   A+G  DG +R+    +   +        SV  + +S D + LA+ S DG
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Query: 177 SARIWK 182
           + RIW 
Sbjct: 284 TIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.8 bits (125), Expect = 1e-07
 Identities = 56/256 (21%), Positives = 97/256 (37%), Gaps = 22/256 (8%)

Query: 27  SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG 86
               +S  S   I  +D  T  +  S L          D +  + +P G      +++G 
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTL------SGHSDSVVSSFSPDGSLLASGSSDGT 264

Query: 87  CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH-WPSLR 145
            +L+++   ++ +  L+     +        ++FS DG   A+G  DG +R+        
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSV------LSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318

Query: 146 IILDEPKAHKS-VLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELC 203
           +     K H+  V  + FS D   L +  S DG+ R+W    G      T      +   
Sbjct: 319 LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG--KPLKTLEGHSNVLSV 376

Query: 204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS 263
            FS DG                + ++D+ST + + +        + L  S DGK LA GS
Sbjct: 377 SFSPDG-----RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS 431

Query: 264 KDGDICVVDVKKMEIN 279
            D  I + D+K    +
Sbjct: 432 SDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 35/251 (13%)

Query: 69  IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA 128
           +A +P G      + +G  K++++  G     L     P        + ++ S DG+  A
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPV-------RDVAASADGTYLA 67

Query: 129 AGGVDGHLRIMHWP-SLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDG 186
           +G  D  +R+  W       +     H S V  + FS D   L+++S D + ++W  E G
Sbjct: 68  SGSSDKTIRL--WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125

Query: 187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKRL 242
              T L  ++D  +    FS DGT  F+  + Q  D  +  ++D+ T   +    GH   
Sbjct: 126 KCLTTLRGHTDW-VNSVAFSPDGT--FVASSSQ--DGTIK-LWDLRTGKCVATLTGHTG- 178

Query: 243 LRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALVEFCP 298
                 V S++   DG+ L   S DG I + D+           L  H     ++  F P
Sbjct: 179 -----EVNSVAFSPDGEKLLSSSSDGTIKLWDLST---GKCLGTLRGHENGVNSVA-FSP 229

Query: 299 TQRVVLTASKE 309
              ++ + S++
Sbjct: 230 DGYLLASGSED 240

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 15/180 (8%)

Query: 30  ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TTNGGCK 88
           + SS   + ++  +        +          EG   +++ +P G   V   + +G  +
Sbjct: 301 SGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354

Query: 89  LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL 148
           L+++  G     L                +SFS DG   ++G  DG +R+    +  ++ 
Sbjct: 355 LWDLRTGKPLKTLEGH--------SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR 406

Query: 149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD 208
           +       V  +DFS D + LA+ S+D + R+W  +  +     + +             
Sbjct: 407 NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 49/215 (22%), Positives = 81/215 (37%), Gaps = 19/215 (8%)

Query: 55  VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP 114
                        ++A +P G     S+ +   K+++V  G     L             
Sbjct: 85  CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV------ 138

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRI--MHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLAT 171
              ++FS DG+  A+   DG +++  +        L     H   V  + FS D E L +
Sbjct: 139 -NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEKLLS 194

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
           +S+DG+ ++W    G       R  +  +    FS DG    L    + G    + V+D+
Sbjct: 195 SSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGY--LLASGSEDG---TIRVWDL 248

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG 266
            T   +          + L+ S DGK LA GS DG
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.8 bits (99), Expect = 2e-04
 Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 7/125 (5%)

Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKP 212
            S+  + FS D E L + S+DG+ ++W  ++G     +    +     +L   S DG   
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 213 FLFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGS-KDGDICV 270
            L  +        + ++D+ST  K+        +  + L+ S DGK LA GS  DG I +
Sbjct: 126 LLASS---SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182

Query: 271 VDVKK 275
            D++ 
Sbjct: 183 WDLRT 187

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWK 182
           K H   V  + FS D   LA+ S DG+ R+W 
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.2 bits (79), Expect = 0.004
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWK 182
           K H   V  + FS D ++LA+ S DG+ ++W 
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.98
KOG0639	705	consensus Transducin-like enhancer of split protei	99.98
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.98
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.98
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG2055	514	consensus WD40 repeat protein [General function pr	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.96
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG1274	933	consensus WD40 repeat protein [General function pr	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG1273	405	consensus WD40 repeat protein [General function pr	99.96
KOG0646	476	consensus WD40 repeat protein [General function pr	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1274	933	consensus WD40 repeat protein [General function pr	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.95
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.94
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.94
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.94
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.93
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.92
PRK11028	330	6-phosphogluconolactonase; Provisional	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.9
KOG0649	325	consensus WD40 repeat protein [General function pr	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG1188	376	consensus WD40 repeat protein [General function pr	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
COG2319	466	FOG: WD40 repeat [General function prediction only	99.88
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.87
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.86
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.86
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.85
KOG4227	609	consensus WD40 repeat protein [General function pr	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG0649	325	consensus WD40 repeat protein [General function pr	99.85
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
PRK01742	429	tolB translocation protein TolB; Provisional	99.84
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.84
KOG1963	792	consensus WD40 repeat protein [General function pr	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG2139	445	consensus WD40 repeat protein [General function pr	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.84
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.83
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.83
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.82
KOG1963	792	consensus WD40 repeat protein [General function pr	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.81
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.81
KOG1310	758	consensus WD40 repeat protein [General function pr	99.81
KOG1188	376	consensus WD40 repeat protein [General function pr	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.81
PRK03629	429	tolB translocation protein TolB; Provisional	99.79
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.79
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.79
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.79
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.79
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.79
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
PRK03629	429	tolB translocation protein TolB; Provisional	99.78
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.78
PRK05137	435	tolB translocation protein TolB; Provisional	99.78
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.78
KOG2139	445	consensus WD40 repeat protein [General function pr	99.77
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.77
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.76
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
PRK04922	433	tolB translocation protein TolB; Provisional	99.76
PRK02889	427	tolB translocation protein TolB; Provisional	99.76
PRK05137	435	tolB translocation protein TolB; Provisional	99.75
PRK04922	433	tolB translocation protein TolB; Provisional	99.75
PRK02889	427	tolB translocation protein TolB; Provisional	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.74
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.73
KOG2321	703	consensus WD40 repeat protein [General function pr	99.72
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.71
KOG1310	758	consensus WD40 repeat protein [General function pr	99.71
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.7
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.7
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.69
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.68
PRK00178	430	tolB translocation protein TolB; Provisional	99.67
PRK00178	430	tolB translocation protein TolB; Provisional	99.66
PRK01029	428	tolB translocation protein TolB; Provisional	99.66
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.65
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.65
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.64
KOG2315	566	consensus Predicted translation initiation factor	99.64
PRK04792	448	tolB translocation protein TolB; Provisional	99.63
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.62
PRK04792	448	tolB translocation protein TolB; Provisional	99.62
PRK01029	428	tolB translocation protein TolB; Provisional	99.61
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.61
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.6
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.6
KOG4547	541	consensus WD40 repeat-containing protein [General	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
COG4946	668	Uncharacterized protein related to the periplasmic	99.53
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.52
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.52
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.52
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.51
KOG2315	566	consensus Predicted translation initiation factor	99.5
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.48
COG4946	668	Uncharacterized protein related to the periplasmic	99.47
PRK04043	419	tolB translocation protein TolB; Provisional	99.46
KOG4547	541	consensus WD40 repeat-containing protein [General	99.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.44
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.42
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.42
KOG2314	698	consensus Translation initiation factor 3, subunit	99.42
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.41
PRK04043	419	tolB translocation protein TolB; Provisional	99.4
KOG2314	698	consensus Translation initiation factor 3, subunit	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.4
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.39
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.36
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.36
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.35
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.35
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.34
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.33
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.33
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.32
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.31
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.31
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.3
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.3
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.3
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.3
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.29
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.26
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.26
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.22
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.22
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.16
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.15
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.1
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.09
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.07
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.05
KOG2695	425	consensus WD40 repeat protein [General function pr	99.03
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.02
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.0
KOG2695	425	consensus WD40 repeat protein [General function pr	99.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.94
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.94
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.9
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.9
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.9
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.87
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.86
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.86
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.85
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.85
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.85
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.79
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.78
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.77
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.76
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.76
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.75
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.75
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.71
PRK02888	635	nitrous-oxide reductase; Validated	98.7
PRK02888	635	nitrous-oxide reductase; Validated	98.67
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.66
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.65
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.62
COG3391	381	Uncharacterized conserved protein [Function unknow	98.6
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.6
COG3391	381	Uncharacterized conserved protein [Function unknow	98.58
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.57
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.55
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.54
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.52
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.52
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.5
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.49
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.46
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.4
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.38
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.37
PRK13616	591	lipoprotein LpqB; Provisional	98.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.36
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.35
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.34
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.33
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.33
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.32
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.28
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.25
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.24
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.24
KOG3621	726	consensus WD40 repeat-containing protein [General	98.23
PRK13616	591	lipoprotein LpqB; Provisional	98.15
KOG3621	726	consensus WD40 repeat-containing protein [General	98.14
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.11
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.11
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.09
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.03
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.99
KOG2444	238	consensus WD40 repeat protein [General function pr	97.95
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.93
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.92
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.87
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.85
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.83
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.79
KOG2395	644	consensus Protein involved in vacuole import and d	97.78
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.76
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.75
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.71
PRK10115	686	protease 2; Provisional	97.69
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.67
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.64
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.61
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.6
KOG2395	644	consensus Protein involved in vacuole import and d	97.54
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.45
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.37
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.35
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.26
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.22
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.12
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.11
PRK10115	686	protease 2; Provisional	97.1
KOG2444	238	consensus WD40 repeat protein [General function pr	97.09
PHA02713	557	hypothetical protein; Provisional	97.09
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.09
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.07
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.03
PHA02713	557	hypothetical protein; Provisional	97.02
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	97.0
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.0
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.97
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.96
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.93
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	96.91
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.79
PRK13684	334	Ycf48-like protein; Provisional	96.77
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.75
PHA03098	534	kelch-like protein; Provisional	96.73
PRK13684	334	Ycf48-like protein; Provisional	96.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.63
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.6
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.55
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.52
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.52
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.45
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.37
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.33
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.32
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.3
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.28
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.24
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.2
PHA03098	534	kelch-like protein; Provisional	96.13
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.97
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.97
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.97
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.95
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	95.91
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.55
COG5167	776	VID27 Protein involved in vacuole import and degra	95.53
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.45
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.43
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.34
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.21
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.18
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.12
COG5167	776	VID27 Protein involved in vacuole import and degra	95.06
COG5276	370	Uncharacterized conserved protein [Function unknow	95.0
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.98
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.89
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.83
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.65
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.61
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.52
KOG2247	615	consensus WD40 repeat-containing protein [General	94.52
KOG2247	615	consensus WD40 repeat-containing protein [General	94.5
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.26
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.22
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.15
PF13449	326	Phytase-like: Esterase-like activity of phytase	94.07
PHA02790	480	Kelch-like protein; Provisional	93.87
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.76
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.53
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.49
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.44
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.25
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.12
COG4590	733	ABC-type uncharacterized transport system, permeas	92.79
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.69
PHA02790	480	Kelch-like protein; Provisional	92.64
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	92.44
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	92.14
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	92.06
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.95
COG4590	733	ABC-type uncharacterized transport system, permeas	91.95
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.92
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	91.4
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.12
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	90.94
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	90.83
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.81
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	90.81
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.64
KOG2109	788	consensus WD40 repeat protein [General function pr	90.03
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	90.0
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	89.82
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.79
PLN02193	470	nitrile-specifier protein	89.77
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	89.52
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.48
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.35
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.28
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.25
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.15
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.25
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.85
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	87.79
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	87.35
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	87.07
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	86.99
COG3292	671	Predicted periplasmic ligand-binding sensor domain	86.9
PRK13613	599	lipoprotein LpqB; Provisional	86.86
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	86.83
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	86.43
PLN02153	341	epithiospecifier protein	85.83
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.67

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-51  Score=316.90  Aligned_cols=306  Identities=17%  Similarity=0.182  Sum_probs=260.5

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      .++|.|++|+|   ++..+|+|++      |.++++|+.+        +..+.++.++|..-|.|++|+|||+.||+|+.
T Consensus       115 ~e~Vl~~~fsp---~g~~l~tGsG------D~TvR~WD~~--------TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~  177 (480)
T KOG0271|consen  115 GEAVLSVQFSP---TGSRLVTGSG------DTTVRLWDLD--------TETPLFTCKGHKNWVLCVAWSPDGKKIASGSK  177 (480)
T ss_pred             CCcEEEEEecC---CCceEEecCC------CceEEeeccC--------CCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence            58999999999   5567888885      4459999998        55566789999999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-----CCCeEEEccCCCcEEEEeCCCCceeeccccCcccee
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~  158 (340)
                      ||.|++||..++++......      .|...|.+++|.|     ..++|++++.||.|+|||+..+.++..+.+|..+|+
T Consensus       178 dg~I~lwdpktg~~~g~~l~------gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VT  251 (480)
T KOG0271|consen  178 DGSIRLWDPKTGQQIGRALR------GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVT  251 (480)
T ss_pred             CCeEEEecCCCCCccccccc------CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceE
Confidence            99999999998876554433      4889999999977     567999999999999999999999999999999999


Q ss_pred             EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEc-----------cCCCcceE-------------
Q 019482          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS-----------KDGTKPFL-------------  214 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~-------------  214 (340)
                      |+.|--+| +|++|+.|++|++|+...|.+...+.+| ...|+.++.+           |.+.+.--             
T Consensus       252 CvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGH-ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  252 CVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGH-AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             EEEEcCCc-eEEecCCCceEEEEEccchhHHHhhccc-chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            99998655 8999999999999999999998888754 4578888776           22222000             


Q ss_pred             -------EEEEecCCcceEEEEECCCC-cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482          215 -------FCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       215 -------~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  286 (340)
                             -.++++++|.++.+|+.... +++..+.+|..-|+.+.||||++++|+++.|..|++||-++|+.+..+ .+|
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-RGH  408 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-RGH  408 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-hhc
Confidence                   01689999999999997654 478888999999999999999999999999999999999999999877 578


Q ss_pred             cccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                       -.+|..++|+.|.++|++||.|.++++|++...+   ...-..+|.+.|.+|
T Consensus       409 -v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~v  457 (480)
T KOG0271|consen  409 -VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAV  457 (480)
T ss_pred             -cceeEEEEeccCccEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEE
Confidence             4799999999999999999999999999997655   233345588777654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.4e-50  Score=317.21  Aligned_cols=282  Identities=15%  Similarity=0.205  Sum_probs=258.4

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC--CCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~   80 (340)
                      +..||..+.|+.   +...+|+|+      -++.+++|+.+        ......+|.+|.+.|.++.|+|.  +..+|+
T Consensus       174 d~rPis~~~fS~---ds~~laT~s------wsG~~kvW~~~--------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat  236 (459)
T KOG0272|consen  174 DTRPISGCSFSR---DSKHLATGS------WSGLVKVWSVP--------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLAT  236 (459)
T ss_pred             CCCcceeeEeec---CCCeEEEee------cCCceeEeecC--------CcceeEEEeccccceeeEEEccCCCccceee
Confidence            467999999999   445778776      56669999987        55566889999999999999996  569999


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      |+.||++++|++.+......+..       |...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.++
T Consensus       237 ~s~Dgtvklw~~~~e~~l~~l~g-------H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i  309 (459)
T KOG0272|consen  237 ASADGTVKLWKLSQETPLQDLEG-------HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI  309 (459)
T ss_pred             eccCCceeeeccCCCcchhhhhc-------chhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence            99999999999998776655543       77899999999999999999999999999999999998888999999999


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      +|+|||..+++|+.|..-+|||++++.++..+.+ |..+|.+++|+|+|-.     +++++.|++++|||++..+.+..+
T Consensus       310 af~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~-----lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  310 AFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYH-----LATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             EecCCCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceE-----EeecCCCCcEEEeeecccccceec
Confidence            9999999999999999999999999999999987 5568999999999987     899999999999999999999999


Q ss_pred             eccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          241 RLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       241 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ..|..-|+.+.|+| .|.+|++++.|++++||..++.++++.+ .+| .+.|.++..++|++++++++.|.++++|.
T Consensus       384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGH-EGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh-cCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999999999 7899999999999999999999999887 578 68999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-46  Score=291.62  Aligned_cols=281  Identities=16%  Similarity=0.203  Sum_probs=244.0

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-----CCCeE
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-----SGDDF   78 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l   78 (340)
                      ..-|.|++|+|   ++..+|+|.      .+|.|.+|+-....       ..-..|.+|...|++++|.|     ..++|
T Consensus       157 ~~WVlcvawsP---Dgk~iASG~------~dg~I~lwdpktg~-------~~g~~l~gH~K~It~Lawep~hl~p~~r~l  220 (480)
T KOG0271|consen  157 KNWVLCVAWSP---DGKKIASGS------KDGSIRLWDPKTGQ-------QIGRALRGHKKWITALAWEPLHLVPPCRRL  220 (480)
T ss_pred             ccEEEEEEECC---Ccchhhccc------cCCeEEEecCCCCC-------cccccccCcccceeEEeecccccCCCccce
Confidence            46689999999   556788777      55669999754222       12345889999999999976     56799


Q ss_pred             EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcccee
Q 019482           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (340)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~  158 (340)
                      |+++.||.++|||+..+.+...+..       |..+|+|+.|--+| +|++|+.|++|++|+...|.....+.+|...|+
T Consensus       221 as~skDg~vrIWd~~~~~~~~~lsg-------HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN  292 (480)
T KOG0271|consen  221 ASSSKDGSVRIWDTKLGTCVRTLSG-------HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN  292 (480)
T ss_pred             ecccCCCCEEEEEccCceEEEEecc-------CccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchhee
Confidence            9999999999999998887766654       88999999998766 999999999999999999999999999988888


Q ss_pred             EEEec-----------CCC-------------------------CeEEEeeCCCeEEEEEccCCe-eEEEeecCCCCcee
Q 019482          159 DMDFS-----------LDS-------------------------EFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIE  201 (340)
Q Consensus       159 ~~~~~-----------~~~-------------------------~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~  201 (340)
                      .++.+           |.+                         ..|++|+.|.++.+|+....+ ++..+.+ |...|+
T Consensus       293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-Hq~lVn  371 (480)
T KOG0271|consen  293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-HQALVN  371 (480)
T ss_pred             eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-hhhhee
Confidence            88776           323                         349999999999999976544 6666654 456799


Q ss_pred             eEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      .+.||||+++     +++++.|..|++||.++|+.+..+++|-..|..++|+.|.++|++|+.|.++++||+++.+...-
T Consensus       372 ~V~fSPd~r~-----IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D  446 (480)
T KOG0271|consen  372 HVSFSPDGRY-----IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD  446 (480)
T ss_pred             eEEECCCccE-----EEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc
Confidence            9999999998     89999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             ccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      + .+| .+.|.++.|+|||..+++|+.|..+++|.
T Consensus       447 L-pGh-~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  447 L-PGH-ADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             C-CCC-CceEEEEEecCCCceeecCCCceEEEeec
Confidence            6 467 67999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.4e-46  Score=292.68  Aligned_cols=261  Identities=19%  Similarity=0.163  Sum_probs=238.5

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEE
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRI  138 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~  138 (340)
                      +-+.+|..+.|+++++.|++|+.+|.+++|+..+......+..       |...|.++.|+|.  +..+++|+.||++++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g-------H~~~v~~~~fhP~~~~~~lat~s~Dgtvkl  245 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG-------HTSRVGAAVFHPVDSDLNLATASADGTVKL  245 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec-------cccceeeEEEccCCCccceeeeccCCceee
Confidence            4567899999999999999999999999999998876666654       8899999999996  668999999999999


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      |++.+...+..+.+|...|..++|+|+|++|+|++.|.+-++||+++++.+....+ |...|.+++|.|||..     ++
T Consensus       246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-Hs~~v~~iaf~~DGSL-----~~  319 (459)
T KOG0272|consen  246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-HSKGVFSIAFQPDGSL-----AA  319 (459)
T ss_pred             eccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-cccccceeEecCCCce-----ee
Confidence            99999899999999999999999999999999999999999999999888776664 5567999999999997     79


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      +++.|..-+|||+++++++..+.+|..+|.+++|+|+|..||+|+.|++++|||++..+.+..+ .+| .+-|+.+.|+|
T Consensus       320 tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i-pAH-~nlVS~Vk~~p  397 (459)
T KOG0272|consen  320 TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI-PAH-SNLVSQVKYSP  397 (459)
T ss_pred             ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceec-ccc-cchhhheEecc
Confidence            9999999999999999999999999999999999999999999999999999999998887776 467 67999999999


Q ss_pred             -CCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          299 -TQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       299 -~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                       .|.+|+|++.|++++||.-   ..|.+.+...+|.+.|-++
T Consensus       398 ~~g~fL~TasyD~t~kiWs~---~~~~~~ksLaGHe~kV~s~  436 (459)
T KOG0272|consen  398 QEGYFLVTASYDNTVKIWST---RTWSPLKSLAGHEGKVISL  436 (459)
T ss_pred             cCCeEEEEcccCcceeeecC---CCcccchhhcCCccceEEE
Confidence             7899999999999999986   4666788899999988665

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-43  Score=264.69  Aligned_cols=290  Identities=10%  Similarity=0.135  Sum_probs=240.7

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +++.|+.++-.+...  .+++.++      .|..+.+|++..+...   .....+.++||...|..+..++||++.++++
T Consensus        14 h~d~Vt~la~~~~~~--~~l~sas------rDk~ii~W~L~~dd~~---~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen   14 HTDWVTALAIKIKNS--DILVSAS------RDKTIIVWKLTSDDIK---YGVPVRRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             CCceEEEEEeecCCC--ceEEEcc------cceEEEEEEeccCccc---cCceeeeeeccceEecceEEccCCceEEecc
Confidence            357889999888633  5566555      5566999999876332   4556778999999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC-ccceeEEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMD  161 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~i~~~~  161 (340)
                      .|+++++||+.+++...++..       |...|.+++|++|.+.|++|+.|.+|++|++............ .+.|.|+.
T Consensus        83 wD~~lrlWDl~~g~~t~~f~G-------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr  155 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVG-------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR  155 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEe-------cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE
Confidence            999999999999987777654       8899999999999999999999999999998765444333332 56899999


Q ss_pred             ecCC--CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          162 FSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       162 ~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      |+|+  ..+|++++.|++|++||+++-+....+.+ +.+.++.+++||||..     .++++.|+.+.+||++.++.+..
T Consensus       156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGsl-----casGgkdg~~~LwdL~~~k~lys  229 (315)
T KOG0279|consen  156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSL-----CASGGKDGEAMLWDLNEGKNLYS  229 (315)
T ss_pred             EcCCCCCcEEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCE-----EecCCCCceEEEEEccCCceeEe
Confidence            9997  67999999999999999998888777765 5578999999999997     78999999999999999998655


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc-------ccceeeEEEecCCeEEEEEecCCcE
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-------GTSIALVEFCPTQRVVLTASKEWGA  312 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i  312 (340)
                      + .+...|.+++|+|+.-.|+.+. +..|+|||+.++.++..+.....       .-...+++|++||+.|++|-.|+.|
T Consensus       230 l-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i  307 (315)
T KOG0279|consen  230 L-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI  307 (315)
T ss_pred             c-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence            4 4566899999999977776665 45699999999887765532221       1246789999999999999999999


Q ss_pred             EEEEec
Q 019482          313 MITKLT  318 (340)
Q Consensus       313 ~iw~~~  318 (340)
                      ++|.+.
T Consensus       308 rv~qv~  313 (315)
T KOG0279|consen  308 RVWQVA  313 (315)
T ss_pred             EEEEee
Confidence            999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3e-43  Score=264.04  Aligned_cols=287  Identities=17%  Similarity=0.169  Sum_probs=243.1

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +.++|+|+.|+++.   +.++++      +.|+.+.+|+.-        +......++-....|..++|+|.|+++|+|+
T Consensus        54 H~~Ki~~~~ws~Ds---r~ivSa------SqDGklIvWDs~--------TtnK~haipl~s~WVMtCA~sPSg~~VAcGG  116 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDS---RRIVSA------SQDGKLIVWDSF--------TTNKVHAIPLPSSWVMTCAYSPSGNFVACGG  116 (343)
T ss_pred             cccceeeeEecCCc---CeEEee------ccCCeEEEEEcc--------cccceeEEecCceeEEEEEECCCCCeEEecC
Confidence            35799999999953   455544      477889999875        2222333444567899999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      -|....||++.+.+..... ........|.+.+.|..|-+|+ .|++++.|.+..+||+++++.+..+.+|.+.|.++.+
T Consensus       117 LdN~Csiy~ls~~d~~g~~-~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  117 LDNKCSIYPLSTRDAEGNV-RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             cCceeEEEecccccccccc-eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence            9999999999855211110 0011123588999999998855 7899999999999999999999999999999999999


Q ss_pred             cC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       163 ~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      +| +++.+++|+-|+..++||++.+.+++.+.++ +..|+++.|.|+|..     ++++++|++.++||+|..+.+..+.
T Consensus       195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-esDINsv~ffP~G~a-----fatGSDD~tcRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-ESDINSVRFFPSGDA-----FATGSDDATCRLYDLRADQELAVYS  268 (343)
T ss_pred             CCCCCCeEEecccccceeeeeccCcceeEeeccc-ccccceEEEccCCCe-----eeecCCCceeEEEeecCCcEEeeec
Confidence            99 9999999999999999999999999999865 467999999999987     8999999999999999988876665


Q ss_pred             cc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          242 LL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       242 ~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ..  ..+|++++||..|++|++|..|..+.+||.-.++....+ .+| ++.|.++..+|||..+++||.|..++||.
T Consensus       269 ~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L-~GH-eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  269 HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL-AGH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe-ecc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence            33  368999999999999999999999999999988888776 477 68999999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-43  Score=260.34  Aligned_cols=285  Identities=14%  Similarity=0.167  Sum_probs=240.9

Q ss_pred             cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee
Q 019482           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI   99 (340)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~   99 (340)
                      .+||+.+      .|.+|++|...        +..+..+++..++.|+.+...|+++.||+++... |++||+.+++...
T Consensus        11 viLvsA~------YDhTIRfWqa~--------tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~P   75 (311)
T KOG0315|consen   11 VILVSAG------YDHTIRFWQAL--------TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNP   75 (311)
T ss_pred             eEEEecc------Ccceeeeeehh--------cCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCc
Confidence            4566444      67779999988        8888889998889999999999999999988766 9999999876521


Q ss_pred             eeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEE
Q 019482          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR  179 (340)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~  179 (340)
                      ...     ...|...|..+.|..+|+++++|++||+++|||++...+. +...+..+|+++..+|+...|++|..+|.|+
T Consensus        76 v~t-----~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q-R~~~~~spVn~vvlhpnQteLis~dqsg~ir  149 (311)
T KOG0315|consen   76 VAT-----FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ-RNYQHNSPVNTVVLHPNQTELISGDQSGNIR  149 (311)
T ss_pred             eeE-----EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc-hhccCCCCcceEEecCCcceEEeecCCCcEE
Confidence            111     1137789999999999999999999999999999985544 4556778999999999999999999999999


Q ss_pred             EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc------EEeeeeccCCCeeEEEEC
Q 019482          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------KIGHKRLLRKPASVLSIS  253 (340)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~i~~~~~s  253 (340)
                      +||+.+..+...+.......+.++...|||+.     ++.+...|..++|++-+.+      ++..++.|.+.+..+.+|
T Consensus       150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsm-----l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS  224 (311)
T KOG0315|consen  150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSM-----LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS  224 (311)
T ss_pred             EEEccCCccccccCCCCCcceeeEEEcCCCcE-----EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence            99999988888887777789999999999998     7888889999999987643      566778889999999999


Q ss_pred             CCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccc
Q 019482          254 LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHS  333 (340)
Q Consensus       254 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~  333 (340)
                      ||+++|++++.|.+++||+.++.-.......+| +..++.++||.||+||++|+.|+.+++|++...+.   .....+|.
T Consensus       225 Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~---v~qy~gh~  300 (311)
T KOG0315|consen  225 PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE---VRQYQGHH  300 (311)
T ss_pred             CCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCCceeecccccCce---eeecCCcc
Confidence            999999999999999999999873333333566 57999999999999999999999999999976653   44555554


Q ss_pred             c
Q 019482          334 H  334 (340)
Q Consensus       334 ~  334 (340)
                      .
T Consensus       301 K  301 (311)
T KOG0315|consen  301 K  301 (311)
T ss_pred             c
Confidence            3

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.6e-43  Score=280.53  Aligned_cols=274  Identities=21%  Similarity=0.267  Sum_probs=226.6

Q ss_pred             eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      .....+..|..-|+++.|+|||.++|+++.||++.+||-.+++....+..    ...|.+.|.+++|+||++.+++++.|
T Consensus       181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~----~~aHkGsIfalsWsPDs~~~~T~SaD  256 (603)
T KOG0318|consen  181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED----SDAHKGSIFALSWSPDSTQFLTVSAD  256 (603)
T ss_pred             eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC----CCCccccEEEEEECCCCceEEEecCC
Confidence            34556778999999999999999999999999999999999988777654    23599999999999999999999999


Q ss_pred             CcEEEEeCCCCceee-------------------------------------------ccccCccceeEEEecCCCCeEE
Q 019482          134 GHLRIMHWPSLRIIL-------------------------------------------DEPKAHKSVLDMDFSLDSEFLA  170 (340)
Q Consensus       134 g~i~~~d~~~~~~~~-------------------------------------------~~~~~~~~i~~~~~~~~~~~l~  170 (340)
                      .+++|||+.+.+.+.                                           .+.+|...|+++..+|++++|+
T Consensus       257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY  336 (603)
T ss_pred             ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence            999999997654332                                           2456778999999999999999


Q ss_pred             EeeCCCeEEEEEccCCeeEE-----------EeecC--------------------------------------------
Q 019482          171 TTSTDGSARIWKTEDGVAWT-----------FLTRN--------------------------------------------  195 (340)
Q Consensus       171 ~~~~d~~v~iwd~~~~~~~~-----------~~~~~--------------------------------------------  195 (340)
                      +|+.||.|.-|+..++..-+           .+...                                            
T Consensus       337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            99999999999986542210           00000                                            


Q ss_pred             -------------------------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCee
Q 019482          196 -------------------------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPAS  248 (340)
Q Consensus       196 -------------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~  248 (340)
                                               ..-...+++++|++..     ++.++.|+.+++|.+....  .......|.++++
T Consensus       417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~-----vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT  491 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE-----VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAIT  491 (603)
T ss_pred             CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE-----EEEecccceEEEEEecCCcccceeeeecccCCce
Confidence                                     0011335667777776     6889999999999998755  3345677889999


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcc
Q 019482          249 VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSL  328 (340)
Q Consensus       249 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~  328 (340)
                      ++++|||+.|||++...+.+.+||..+.+........| ...|.+++|+|++.++|+||-|..|.||+++.|.+.  ...
T Consensus       492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FH-takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~--i~i  568 (603)
T KOG0318|consen  492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFH-TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH--III  568 (603)
T ss_pred             EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeee-eeeEEEEEeCCCceEEEeccccceEEEEEccChhhh--eEe
Confidence            99999999999999999999999999988854444446 689999999999999999999999999999999864  788


Q ss_pred             ccccccccccC
Q 019482          329 PLLHSHSQNSV  339 (340)
Q Consensus       329 ~~~h~~~v~~v  339 (340)
                      ...|..+|++|
T Consensus       569 knAH~~gVn~v  579 (603)
T KOG0318|consen  569 KNAHLGGVNSV  579 (603)
T ss_pred             ccccccCceeE
Confidence            89999999876

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.4e-45  Score=285.34  Aligned_cols=287  Identities=17%  Similarity=0.210  Sum_probs=251.1

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      -+|..+.|.|+   ++-|++|+      ..+.+.+|+..        ....+..++.|+.+|+++.|+++|.++++|+.+
T Consensus        97 c~V~~v~WtPe---GRRLltgs------~SGEFtLWNg~--------~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g  159 (464)
T KOG0284|consen   97 CPVNVVRWTPE---GRRLLTGS------QSGEFTLWNGT--------SFNFETILQAHDSPVRTMKWSHNGTWMISGDKG  159 (464)
T ss_pred             cceeeEEEcCC---CceeEeec------ccccEEEecCc--------eeeHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence            47899999994   33344444      55669999875        444556688999999999999999999999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (340)
                      |.|++|+..-..... +..      .|...|++++|+|+...|++++.||+|+|||....+....+.+|.-.|.+++|+|
T Consensus       160 G~iKyWqpnmnnVk~-~~a------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP  232 (464)
T KOG0284|consen  160 GMIKYWQPNMNNVKI-IQA------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP  232 (464)
T ss_pred             ceEEecccchhhhHH-hhH------hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC
Confidence            999999987554322 111      1458999999999999999999999999999988877777788888999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC
Q 019482          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (340)
                      ...++++++.|..|++||.++++++.++.. |...|..+.|+|++++     +++++.|..++++|+++.+.+..+++|+
T Consensus       233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~-HKntVl~~~f~~n~N~-----Llt~skD~~~kv~DiR~mkEl~~~r~Hk  306 (464)
T KOG0284|consen  233 TKGLIASGSKDNLVKLWDPRSGSCLATLHG-HKNTVLAVKFNPNGNW-----LLTGSKDQSCKVFDIRTMKELFTYRGHK  306 (464)
T ss_pred             ccceeEEccCCceeEeecCCCcchhhhhhh-ccceEEEEEEcCCCCe-----eEEccCCceEEEEehhHhHHHHHhhcch
Confidence            999999999999999999999999999975 4568999999999987     8999999999999999999999999999


Q ss_pred             CCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          245 KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       245 ~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      ..++++.|+| ...+|.+|+.||.|..|.+...+++..+..+| ...|++++|+|-|.+|++|+.|.++++|.-..|.+
T Consensus       307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AH-d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d  384 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAH-DGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGD  384 (464)
T ss_pred             hhheeeccccccccceeeccCCCceEEEeccccccccCCCccc-ccceeeeeccccceeEeecCCCcceeeeccCCCCC
Confidence            9999999999 56788999999999999999888888888888 68999999999999999999999999999887765

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.7e-42  Score=259.90  Aligned_cols=268  Identities=13%  Similarity=0.144  Sum_probs=236.3

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      .+.+|+||.+.|+++.|++|.++|++++.||.+.|||..+......+..       ....|...+|+|.|+++|+|+-|+
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------~s~WVMtCA~sPSg~~VAcGGLdN  119 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------PSSWVMTCAYSPSGNFVACGGLDN  119 (343)
T ss_pred             eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-------CceeEEEEEECCCCCeEEecCcCc
Confidence            4578999999999999999999999999999999999988766554432       346899999999999999999999


Q ss_pred             cEEEEeCCCC------ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-
Q 019482          135 HLRIMHWPSL------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-  207 (340)
Q Consensus       135 ~i~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-  207 (340)
                      ...||++.+.      .....+.+|.+.+.++.|-+| ..|+|++.|.++.+||+++++.+..+.+ |.+.|.+++++| 
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~  197 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPS  197 (343)
T ss_pred             eeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCC
Confidence            9999999854      234557788889999999875 4689999999999999999999999985 456899999999 


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL  287 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  287 (340)
                      +++.     +++++-|...++||+|.+..++.+.+|+..|+++.|.|+|.-+++|++|+..++||++..+.+..+.....
T Consensus       198 ~~nt-----FvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~  272 (343)
T KOG0286|consen  198 DGNT-----FVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI  272 (343)
T ss_pred             CCCe-----EEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc
Confidence            7765     79999999999999999999999999999999999999999999999999999999999888877765555


Q ss_pred             ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       288 ~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      ..+|++++||..|++|++|..|.++.+||.-...   ......+|.+.|.+|
T Consensus       273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e---~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---RVGVLAGHENRVSCL  321 (343)
T ss_pred             cCCceeEEEcccccEEEeeecCCceeEeeccccc---eEEEeeccCCeeEEE
Confidence            6789999999999999999999999999985444   456677899988765

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2e-41  Score=252.57  Aligned_cols=259  Identities=17%  Similarity=0.175  Sum_probs=220.6

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      ....-++++|++.|..++..+.+ +.++++++|..+.+|++.......-...  .....|...|..+..++||++.++++
T Consensus         5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~--r~~~GHsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen    5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPV--RRLTGHSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCcee--eeeeccceEecceEEccCCceEEecc
Confidence            34556789999999999999874 5788999999999999976532211111  11123778999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC-CCceeeEEEccCCC
Q 019482          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGT  210 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~  210 (340)
                      .|+++++||+.+++..+.+.+|...|.+++|+||++.+++|+.|.+|++|+.. +.+..++.... .+.|.++.|+|+..
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~  161 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNES  161 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCC
Confidence            99999999999999999999999999999999999999999999999999986 45555555444 78999999999964


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  290 (340)
                      .++   +++++.|+++++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++.++.+.  + ...
T Consensus       162 ~p~---Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~--a-~~~  235 (315)
T KOG0279|consen  162 NPI---IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE--A-FDI  235 (315)
T ss_pred             CcE---EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc--C-CCe
Confidence            433   7999999999999999999999999999999999999999999999999999999999999987654  3 579


Q ss_pred             eeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          291 IALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      |.+++|+|+...|+.+. +..|+||+++...
T Consensus       236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~  265 (315)
T KOG0279|consen  236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKA  265 (315)
T ss_pred             EeeEEecCCceeEeecc-CCceEEEeccchh
Confidence            99999999876666654 4569999998654

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1e-41  Score=271.07  Aligned_cols=296  Identities=18%  Similarity=0.204  Sum_probs=245.9

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeee--EEEec----CCCCeeEEEEcCCCC
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVT--YVFDE----SEGDPMTIAVNPSGD   76 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~~~~~----h~~~v~~~~~~~~~~   76 (340)
                      +..+|++++|+|...  .++++|++..+      .++|++..+.........++  ..+.+    ....|++++|+.+|.
T Consensus       177 ~~~~V~~~~WnP~~~--~llasg~~~s~------ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~  248 (524)
T KOG0273|consen  177 HESEVFICAWNPLRD--GLLASGSGDST------ARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT  248 (524)
T ss_pred             CCCceEEEecCchhh--hhhhccCCccc------eeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence            467899999999543  47787776554      88888864222221111111  11111    235799999999999


Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS  156 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  156 (340)
                      .||+|+.||.+++|+..... ...+.       .|.++|.++.|+.+|.||++++.|+++.+||..+++..+.+.-|..+
T Consensus       249 ~LatG~~~G~~riw~~~G~l-~~tl~-------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~  320 (524)
T KOG0273|consen  249 LLATGSEDGEARIWNKDGNL-ISTLG-------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP  320 (524)
T ss_pred             eEEEeecCcEEEEEecCchh-hhhhh-------ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence            99999999999999986543 22222       38899999999999999999999999999999999988888777777


Q ss_pred             eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      ..++.|-.+ ..+++++.|+.|+++.+....++.++.+ |.+.|.++.|.|.+..     ++++++|++++||.......
T Consensus       321 ~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~L-----LaS~SdD~TlkiWs~~~~~~  393 (524)
T KOG0273|consen  321 ALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSL-----LASCSDDGTLKIWSMGQSNS  393 (524)
T ss_pred             ccceEEecC-ceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCce-----EEEecCCCeeEeeecCCCcc
Confidence            678999754 4688999999999999999999999997 5578999999999997     89999999999999999888


Q ss_pred             EeeeeccCCCeeEEEECCCC---------CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482          237 IGHKRLLRKPASVLSISLDG---------KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      ...+..|...|..+.|+|.|         ..+++++.|+.|++||+..+.++..+. .| ..+|.+++|+|+|+++|+|+
T Consensus       394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-kH-~~pVysvafS~~g~ylAsGs  471 (524)
T KOG0273|consen  394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-KH-QEPVYSVAFSPNGRYLASGS  471 (524)
T ss_pred             hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-cC-CCceEEEEecCCCcEEEecC
Confidence            88999999999999999964         468999999999999999999999874 45 68999999999999999999


Q ss_pred             cCCcEEEEEecCCCCC
Q 019482          308 KEWGAMITKLTVPADW  323 (340)
Q Consensus       308 ~dg~i~iw~~~~~~~~  323 (340)
                      .||.|.+|+.+..+.+
T Consensus       472 ~dg~V~iws~~~~~l~  487 (524)
T KOG0273|consen  472 LDGCVHIWSTKTGKLV  487 (524)
T ss_pred             CCCeeEeccccchhee
Confidence            9999999999876643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.9e-42  Score=288.98  Aligned_cols=260  Identities=18%  Similarity=0.264  Sum_probs=230.0

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--------eeee-----------c-----cccCCCCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--------DINL-----------L-----AKKMPPLQ  110 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--------~~~~-----------~-----~~~~~~~~  110 (340)
                      +.+++..-...++|..|++|+..||.|-.|..|++|.+...+.        ....           .     ........
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            4445555566799999999999999999999999999984220        0000           0     00011245


Q ss_pred             CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  190 (340)
                      |.++|....|+|+.++|+++++|+++++|.+.+..++..+.+|..+|.++.|+|.|-+|||++.|++-++|.....++++
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR  529 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR  529 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999988988


Q ss_pred             EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (340)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  270 (340)
                      .+.++. ..+.|+.|+|+..+     +++++.|.++++||+.+|..++.+.+|.++|.+++|||+|++|++|+.||.|++
T Consensus       530 ifaghl-sDV~cv~FHPNs~Y-----~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  530 IFAGHL-SDVDCVSFHPNSNY-----VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             hhcccc-cccceEEECCcccc-----cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence            887655 57999999999998     899999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       271 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      ||+.+++.+..+ .+| .+.|.++.|+.||..||+||.|+.|++||+.....
T Consensus       604 WDl~~~~~v~~l-~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  604 WDLANGSLVKQL-KGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EEcCCCcchhhh-hcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence            999999998877 467 68999999999999999999999999999986653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.4e-41  Score=267.01  Aligned_cols=285  Identities=17%  Similarity=0.242  Sum_probs=247.3

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ...|+|++|+.   ++.+||+|.      .++.++||+.+         ..+..+|..|.++|.++.|+..|+||++++.
T Consensus       235 nkdVT~L~Wn~---~G~~LatG~------~~G~~riw~~~---------G~l~~tl~~HkgPI~slKWnk~G~yilS~~v  296 (524)
T KOG0273|consen  235 NKDVTSLDWNN---DGTLLATGS------EDGEARIWNKD---------GNLISTLGQHKGPIFSLKWNKKGTYILSGGV  296 (524)
T ss_pred             cCCcceEEecC---CCCeEEEee------cCcEEEEEecC---------chhhhhhhccCCceEEEEEcCCCCEEEeccC
Confidence            35699999999   667899888      55569999876         2233557789999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      |+++.+||..++.....+..       |..+-..+.|-.+ ..+++.+.|+.|+++.+....++.++.+|+++|.++.|+
T Consensus       297 D~ttilwd~~~g~~~q~f~~-------~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n  368 (524)
T KOG0273|consen  297 DGTTILWDAHTGTVKQQFEF-------HSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN  368 (524)
T ss_pred             CccEEEEeccCceEEEeeee-------ccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence            99999999988887665543       5556678889654 478899999999999999989999999999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc----eEEEEEecCCcceEEEEECCCCcEEee
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP----FLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      |.+.+|+++|.|++++||+.........+..+. ..|+.+.|+|+|...    --..+++++.|+++++||+..+.++..
T Consensus       369 ~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~  447 (524)
T KOG0273|consen  369 PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT  447 (524)
T ss_pred             CCCceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe
Confidence            999999999999999999999888888887554 569999999986421    001268889999999999999999999


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +..|..+|.+++|+|+|+++|+|+.||.|.+|++++++..+....   ...|..++|+.+|.+|..+-.|+.+++-++.
T Consensus       448 f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  448 LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999999999999999999999999999999887643   4579999999999999999999999998875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.2e-41  Score=286.73  Aligned_cols=250  Identities=18%  Similarity=0.265  Sum_probs=222.3

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCC-------CCcc----------------cCCeeeEEEec
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKT-------TSVY----------------TSPLVTYVFDE   61 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~-------~~~~----------------~~~~~~~~~~~   61 (340)
                      .-++|+.|++   +..++|.|-      .+..|++|.+.+..       ..+.                .+.....++-|
T Consensus       379 ~~v~ca~fSd---dssmlA~Gf------~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  379 QGVTCAEFSD---DSSMLACGF------VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             CcceeEeecC---Ccchhhccc------cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            3478999998   445777666      45569999998532       0000                12334556999


Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      |.++|..+.|+|+.++|++++.|+++++|.+.+........+       |..||.++.|+|.|-|||+++.|++.++|..
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G-------H~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG-------HLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC-------CCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            999999999999999999999999999999999888776654       8899999999999999999999999999999


Q ss_pred             CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      ....+.+.+.+|-..|.|+.|+|+.+++++||.|.+|++||+.+|..++.+.+ |.++|.+++|||+|++     +++++
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~-----LaSg~  596 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRY-----LASGD  596 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCce-----Eeecc
Confidence            98888888999999999999999999999999999999999999999999976 5679999999999998     89999


Q ss_pred             CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  276 (340)
                      .|+.|.+||+.+++.+..+.+|.+.|.++.|+.+|..||+|+.|++|++||+...
T Consensus       597 ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  597 EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999999999999999999999999999999999999999999999998653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-40  Score=256.34  Aligned_cols=286  Identities=15%  Similarity=0.158  Sum_probs=248.2

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      .+|+.+-|.|   ...++++.+      .+.+|++|++.        +......++||.+.|..++|+..|+++++++.|
T Consensus       109 ~~vt~v~~hp---~~~~v~~as------~d~tikv~D~~--------tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD  171 (406)
T KOG0295|consen  109 SSVTRVIFHP---SEALVVSAS------EDATIKVFDTE--------TGELERSLRGHTDSVFDISFDASGKYLATCSSD  171 (406)
T ss_pred             cceeeeeecc---CceEEEEec------CCceEEEEEcc--------chhhhhhhhccccceeEEEEecCccEEEecCCc
Confidence            4677777777   334555443      56779999987        555577899999999999999999999999999


Q ss_pred             CCEEEEEecCc-eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           85 GGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        85 ~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      =.+++||.++. ++....       ..|...|.++.|-|.|.+|++++.|.+|+.|++.++.++..+.+|.+.|..++.+
T Consensus       172 l~~~LWd~~~~~~c~ks~-------~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~  244 (406)
T KOG0295|consen  172 LSAKLWDFDTFFRCIKSL-------IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN  244 (406)
T ss_pred             cchhheeHHHHHHHHHHh-------cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEec
Confidence            88999999763 222222       2477899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE----------EEEEecCCcceEEEEECCC
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL----------FCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~d~~i~i~d~~~  233 (340)
                      .||.++++++.|.+|++|-+.++++...+.. |+.++.+++|.|...+.-+          -.+.+++.|++|++||+.+
T Consensus       245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~-hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  245 QDGTIIASCSNDQTLRVWVVATKQCKAELRE-HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             CCeeEEEecCCCceEEEEEeccchhhhhhhc-cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            9999999999999999999999988877764 4568999999875432111          1268889999999999999


Q ss_pred             CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (340)
Q Consensus       234 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  313 (340)
                      +.++.++.+|...|..++|+|.|+||+++.+|+++++||+++++++..+. .| ..-++++.|+.+-.++++|+-|..++
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah-~hfvt~lDfh~~~p~VvTGsVdqt~K  401 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AH-EHFVTSLDFHKTAPYVVTGSVDQTVK  401 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CC-cceeEEEecCCCCceEEeccccceee
Confidence            99999999999999999999999999999999999999999999998886 66 56899999999999999999999999


Q ss_pred             EEEe
Q 019482          314 ITKL  317 (340)
Q Consensus       314 iw~~  317 (340)
                      +|..
T Consensus       402 vwEc  405 (406)
T KOG0295|consen  402 VWEC  405 (406)
T ss_pred             eeec
Confidence            9974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.5e-39  Score=269.72  Aligned_cols=295  Identities=15%  Similarity=0.213  Sum_probs=248.4

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..+|..++|+.   .+..+|.|+..     -+.+-+|++.        ........++|...+++++++|||+++|+|+.
T Consensus       307 ~~~I~t~~~N~---tGDWiA~g~~k-----lgQLlVweWq--------sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e  370 (893)
T KOG0291|consen  307 DQKILTVSFNS---TGDWIAFGCSK-----LGQLLVWEWQ--------SESYVLKQQGHSDRITSLAYSPDGQLIATGAE  370 (893)
T ss_pred             cceeeEEEecc---cCCEEEEcCCc-----cceEEEEEee--------ccceeeeccccccceeeEEECCCCcEEEeccC
Confidence            47888999998   56789988753     4579999998        44455667899999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-ceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~i~~~~~  162 (340)
                      ||+|+|||..++-+...+..       |...|+.+.|+..++.+++.+-||+|+.||+......+.+..... +..|++.
T Consensus       371 DgKVKvWn~~SgfC~vTFte-------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav  443 (893)
T KOG0291|consen  371 DGKVKVWNTQSGFCFVTFTE-------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV  443 (893)
T ss_pred             CCcEEEEeccCceEEEEecc-------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence            99999999999988877753       889999999999999999999999999999998887777765443 6789999


Q ss_pred             cCCCCeEEEeeCCC-eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          163 SLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       163 ~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      .|.|..+..|+.|. .|.+|++++|+.+..+.+ |+++|.+++|+|++..     +++++.|.+|++||+-......+..
T Consensus       444 D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG-HEgPVs~l~f~~~~~~-----LaS~SWDkTVRiW~if~s~~~vEtl  517 (893)
T KOG0291|consen  444 DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG-HEGPVSGLSFSPDGSL-----LASGSWDKTVRIWDIFSSSGTVETL  517 (893)
T ss_pred             cCCCCEEEeeccceEEEEEEEeecCeeeehhcC-CCCcceeeEEccccCe-----EEeccccceEEEEEeeccCceeeeE
Confidence            99999999998875 699999999999988874 6689999999999997     8999999999999987653333344


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc------------------ccccccceeeEEEecCCeEE
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK------------------RLHLGTSIALVEFCPTQRVV  303 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------------~~~~~~~i~~~~~~~~~~~l  303 (340)
                      .....+..++|+|+|+.|++++-||.|.+||.+.+.....+.                  ....+...+.+++++||..|
T Consensus       518 ~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~I  597 (893)
T KOG0291|consen  518 EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCI  597 (893)
T ss_pred             eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEE
Confidence            456689999999999999999999999999998765442221                  11124578999999999999


Q ss_pred             EEEecCCcEEEEEecCCCCCCCCc
Q 019482          304 LTASKEWGAMITKLTVPADWKGLS  327 (340)
Q Consensus       304 ~~~~~dg~i~iw~~~~~~~~~~~~  327 (340)
                      ++||....|.+|+++.....+.++
T Consensus       598 lAgG~sn~iCiY~v~~~vllkkfq  621 (893)
T KOG0291|consen  598 LAGGESNSICIYDVPEGVLLKKFQ  621 (893)
T ss_pred             EecCCcccEEEEECchhheeeeEE
Confidence            999999999999998765544433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-39  Score=269.50  Aligned_cols=286  Identities=19%  Similarity=0.233  Sum_probs=248.7

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      +.+|+|++|++   ..+++|.|-.      .+.+.+|.+.        ...+.+.+.-...+|..++|+..|+.||.|+.
T Consensus       265 ~~kvtaa~fH~---~t~~lvvgFs------sG~f~LyelP--------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~  327 (893)
T KOG0291|consen  265 SSKVTAAAFHK---GTNLLVVGFS------SGEFGLYELP--------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCS  327 (893)
T ss_pred             ccceeeeeccC---CceEEEEEec------CCeeEEEecC--------CceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence            47899999999   5567887764      4448899887        66677778777889999999999999999876


Q ss_pred             C-CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           84 N-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      . |++.||+..+...+.+..       .|...+.+++++|||+++++|+.||.|++||...+-+..++..|...|+.+.|
T Consensus       328 klgQLlVweWqsEsYVlKQQ-------gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f  400 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESYVLKQQ-------GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF  400 (893)
T ss_pred             ccceEEEEEeeccceeeecc-------ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE
Confidence            6 899999998877665543       37889999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc-ceEEEEECCCCcEEeeee
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~  241 (340)
                      +..|+.+++.+-||+|+.||+......+++.........+++..|.|..     +.+++.| -.|.+|++.+|+.+..+.
T Consensus       401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel-----V~AG~~d~F~IfvWS~qTGqllDiLs  475 (893)
T KOG0291|consen  401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL-----VCAGAQDSFEIFVWSVQTGQLLDILS  475 (893)
T ss_pred             EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE-----EEeeccceEEEEEEEeecCeeeehhc
Confidence            9999999999999999999999999999998777777889999999985     3444444 579999999999999999


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      +|+++|.+++|+|++..|++++.|.+|++||+-... ....+..   ...+..++|+|||+.|+++..||.|.+|+.+..
T Consensus       476 GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~  552 (893)
T KOG0291|consen  476 GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---RSDVLAVSFRPDGKELAVATLDGQITFFDIKEA  552 (893)
T ss_pred             CCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---ccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence            999999999999999999999999999999986542 2222222   357999999999999999999999999998754


Q ss_pred             C
Q 019482          321 A  321 (340)
Q Consensus       321 ~  321 (340)
                      .
T Consensus       553 ~  553 (893)
T KOG0291|consen  553 V  553 (893)
T ss_pred             e
Confidence            3

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.9e-41  Score=262.76  Aligned_cols=261  Identities=15%  Similarity=0.198  Sum_probs=226.2

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      -+-.|..+.|.|+|+.|++|+..|.+.+|+.........+       ..|..+|+++.|++++.++++|+.+|.|++|+.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil-------QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp  167 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL-------QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP  167 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh-------hhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence            3457999999999999999999999999998544332222       138899999999999999999999999999996


Q ss_pred             CCCceeeccccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          142 PSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       142 ~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      .- ..+..+..|+ ..|++++|+|+...|++++.||+|+|||....+....+.+ |.-.|.+++|+|.-..     ++++
T Consensus       168 nm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kgL-----iasg  240 (464)
T KOG0284|consen  168 NM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKGL-----IASG  240 (464)
T ss_pred             ch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccce-----eEEc
Confidence            54 4455566666 6999999999888999999999999999999888888864 4567999999999876     8999


Q ss_pred             CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC-
Q 019482          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-  299 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-  299 (340)
                      +.|..|++||.++++++..+..|+..|..+.|+|++++|++++.|..+++||+++.+.+..+ .+| ...++++.|+|- 
T Consensus       241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~-r~H-kkdv~~~~WhP~~  318 (464)
T KOG0284|consen  241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY-RGH-KKDVTSLTWHPLN  318 (464)
T ss_pred             cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh-hcc-hhhheeecccccc
Confidence            99999999999999999999999999999999999999999999999999999987777666 467 579999999994 


Q ss_pred             CeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482          300 QRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                      ..+|.+|+.||.|..|.+....  +....+..|...|.+++
T Consensus       319 ~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~  357 (464)
T KOG0284|consen  319 ESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLA  357 (464)
T ss_pred             ccceeeccCCCceEEEeccccc--cccCCCcccccceeeee
Confidence            4788999999999999997443  34567888999888874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.9e-38  Score=258.17  Aligned_cols=283  Identities=20%  Similarity=0.314  Sum_probs=242.0

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      .+..+|++++|+|+   ..++++|+      .++.+.+|+++..        .....+..|...+..+.|+|++++++++
T Consensus         7 ~h~~~i~~~~~~~~---~~~l~~~~------~~g~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~   69 (289)
T cd00200           7 GHTGGVTCVAFSPD---GKLLATGS------GDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASADGTYLASG   69 (289)
T ss_pred             ccCCCEEEEEEcCC---CCEEEEee------cCcEEEEEEeeCC--------CcEEEEecCCcceeEEEECCCCCEEEEE
Confidence            35689999999995   35666555      4667999998733        2345677899999999999999999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +.++.+++|++.+.+....+.       .|...+.++.|+++++++++++.++.|.+||+.+++....+..+...+.++.
T Consensus        70 ~~~~~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  142 (289)
T cd00200          70 SSDKTIRLWDLETGECVRTLT-------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA  142 (289)
T ss_pred             cCCCeEEEEEcCcccceEEEe-------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence            999999999998765444433       2567899999999988999888899999999998888877777778899999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      |+|++.++++++.|+.+++||+++++.+..+.. +...+.++.|+|+++.     +++++.++.+++||++.++.+..+.
T Consensus       143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-----l~~~~~~~~i~i~d~~~~~~~~~~~  216 (289)
T cd00200         143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-HTGEVNSVAFSPDGEK-----LLSSSSDGTIKLWDLSTGKCLGTLR  216 (289)
T ss_pred             EcCcCCEEEEEcCCCcEEEEEccccccceeEec-CccccceEEECCCcCE-----EEEecCCCcEEEEECCCCceecchh
Confidence            999998898888899999999998888877764 4457999999999976     6777779999999999988888887


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      .+...+.++.|+|++.++++++.||.|++||+.+++....+. .| ...+.+++|+|++++|++++.||.+++|+
T Consensus       217 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         217 GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GH-TNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-cc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            888899999999999899988889999999999888877764 55 56899999999999999999999999995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.5e-39  Score=276.66  Aligned_cols=287  Identities=18%  Similarity=0.276  Sum_probs=244.1

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ...|+|+.|+++   +..++.+.      .++.+.+|.......      .....+.+|...|.+++|+|+++++++++.
T Consensus       159 ~~sv~~~~fs~~---g~~l~~~~------~~~~i~~~~~~~~~~------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  159 CPSVTCVDFSPD---GRALAAAS------SDGLIRIWKLEGIKS------NLLRELSGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             cCceEEEEEcCC---CCeEEEcc------CCCcEEEeecccccc------hhhccccccccceeeeEECCCCcEEEEecC
Confidence            467899999994   44566555      566699998842221      233455889999999999999999999999


Q ss_pred             CCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           84 NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      |++|+|||+.. +.....+.       .|...|++++|+|+++++++|+.|++|++||++++++...+..|.+.|++++|
T Consensus       224 D~tiriwd~~~~~~~~~~l~-------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f  296 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLK-------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF  296 (456)
T ss_pred             CceEEEeeccCCCeEEEEec-------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence            99999999944 35555554       38899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCe--eEEEeecCCCC-ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      ++++++|++++.|+.|++||+.+++  +...+...... ++++++|+|++.+     ++++..|+.+++||++.+..+..
T Consensus       297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-----ll~~~~d~~~~~w~l~~~~~~~~  371 (456)
T KOG0266|consen  297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-----LLSASLDRTLKLWDLRSGKSVGT  371 (456)
T ss_pred             CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-----EEEecCCCeEEEEEccCCcceee
Confidence            9999999999999999999999998  55666655544 6999999999998     88999999999999999999888


Q ss_pred             eeccCCC---eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe--cCCcEEE
Q 019482          240 KRLLRKP---ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMI  314 (340)
Q Consensus       240 ~~~~~~~---i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i  314 (340)
                      +..|...   +.+...++.++++++|+.|+.|++||+.++..+..+. +|....+..++++|..+++++++  .|+.+++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~  450 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-GHSKAAVSDLSSHPTENLIASSSFEGDGLIRL  450 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-CCCCCceeccccCCCcCeeeecCcCCCceEEE
Confidence            8888764   4445567899999999999999999999988777664 45246889999999999999998  7889999


Q ss_pred             EEec
Q 019482          315 TKLT  318 (340)
Q Consensus       315 w~~~  318 (340)
                      |..+
T Consensus       451 w~~~  454 (456)
T KOG0266|consen  451 WKYD  454 (456)
T ss_pred             ecCC
Confidence            9864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-38  Score=245.72  Aligned_cols=286  Identities=16%  Similarity=0.181  Sum_probs=238.6

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ++.+|++++.+|   ...++++|++      |..-.+|+..        +.....++.+|++.|+++.|+.+|.+||+|+
T Consensus        63 H~~svFavsl~P---~~~l~aTGGg------DD~AflW~~~--------~ge~~~eltgHKDSVt~~~FshdgtlLATGd  125 (399)
T KOG0296|consen   63 HTDSVFAVSLHP---NNNLVATGGG------DDLAFLWDIS--------TGEFAGELTGHKDSVTCCSFSHDGTLLATGD  125 (399)
T ss_pred             cCCceEEEEeCC---CCceEEecCC------CceEEEEEcc--------CCcceeEecCCCCceEEEEEccCceEEEecC
Confidence            578999999999   4468898884      5558999887        4445578999999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      -+|.|+||...++.....+..       ....+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=.|
T Consensus       126 msG~v~v~~~stg~~~~~~~~-------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f  198 (399)
T KOG0296|consen  126 MSGKVLVFKVSTGGEQWKLDQ-------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF  198 (399)
T ss_pred             CCccEEEEEcccCceEEEeec-------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence            999999999999887666642       3367888999999999999999999999999998778888898899999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc-------------------------------------------
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK-------------------------------------------  199 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------------------------------------------  199 (340)
                      .|+|+.++++..||+|++||+.+++++..+.......                                           
T Consensus       199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l  278 (399)
T KOG0296|consen  199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL  278 (399)
T ss_pred             cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence            9999999999999999999999998887765211111                                           


Q ss_pred             -------eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482          200 -------IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       200 -------v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                             +.++.+.|....+  ...+.++-||+|.|||+...+. +..-.|...|..+.|-+ ..+|++++.+|.|+.||
T Consensus       279 ~~~~e~~~esve~~~~ss~l--pL~A~G~vdG~i~iyD~a~~~~-R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  279 KPSQEELDESVESIPSSSKL--PLAACGSVDGTIAIYDLAASTL-RHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD  354 (399)
T ss_pred             cccchhhhhhhhhccccccc--chhhcccccceEEEEecccchh-heeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence                   1122222222211  1257788999999999998765 44556777899999998 78999999999999999


Q ss_pred             ccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .++|+.+..+ .+| ..+|..++.+|+.++++|+|.|++.+|++++
T Consensus       355 aRtG~l~~~y-~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  355 ARTGQLKFTY-TGH-QMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ccccceEEEE-ecC-chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999998876 578 6899999999999999999999999999874

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-39  Score=245.46  Aligned_cols=268  Identities=19%  Similarity=0.189  Sum_probs=226.4

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      +...+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++..... ...+.       .|.+.|..+.|.+|++.+++++.|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-------gHsgAVM~l~~~~d~s~i~S~gtD  111 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-------GHSGAVMELHGMRDGSHILSCGTD  111 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-------cccceeEeeeeccCCCEEEEecCC
Confidence            3456789999999999999999999999999999999765432 22221       489999999999999999999999


Q ss_pred             CcEEEEeCCCCceeeccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (340)
                      .+++.||+++++.+.++..|..-++.+.-+.-|. ++.+++.|+++++||+++...++++..  ..+++++.|..++.. 
T Consensus       112 k~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~--kyqltAv~f~d~s~q-  188 (338)
T KOG0265|consen  112 KTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN--KYQLTAVGFKDTSDQ-  188 (338)
T ss_pred             ceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc--ceeEEEEEecccccc-
Confidence            9999999999999999999998888888555444 577888999999999999999888863  346999999999988 


Q ss_pred             eEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce----Eeeccccccc-
Q 019482          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME----INHWSKRLHL-  287 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~-  287 (340)
                          +.+++-|+.|++||++.......+.+|..+|+.+..+|+|.++.+-+.|..+++||++...    ++..+....+ 
T Consensus       189 ----v~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn  264 (338)
T KOG0265|consen  189 ----VISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN  264 (338)
T ss_pred             ----eeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence                8999999999999999999999999999999999999999999999999999999997633    2333321111 


Q ss_pred             -ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          288 -GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       288 -~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                       +.....++|+|+++.+.+|+.|..+++|+.....   .+....+|.+.|+.+
T Consensus       265 feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---~lyklpGh~gsvn~~  314 (338)
T KOG0265|consen  265 FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---ILYKLPGHYGSVNEV  314 (338)
T ss_pred             hhhhcceeeccCCCCccccccccceEEEeeccccc---EEEEcCCcceeEEEe
Confidence             1245678999999999999999999999986544   456677788887765

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=7.2e-38  Score=232.76  Aligned_cols=284  Identities=14%  Similarity=0.159  Sum_probs=227.4

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE-ecCCCCeeEEEEcCCCCeEEEEe
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ++++..++|+|..  +.++|+++      .++.|++|+... ..    +..+...+ .+|+..|++++|+|.|++||+++
T Consensus        14 ~~r~W~~awhp~~--g~ilAscg------~Dk~vriw~~~~-~~----s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS   80 (312)
T KOG0645|consen   14 KDRVWSVAWHPGK--GVILASCG------TDKAVRIWSTSS-GD----SWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS   80 (312)
T ss_pred             CCcEEEEEeccCC--ceEEEeec------CCceEEEEecCC-CC----cEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence            5689999999942  46788777      456699999874 21    23333333 47999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC---ceeeccccCccceeE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHKSVLD  159 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~i~~  159 (340)
                      .|.++.||.-..++....-..     ..|...|.|++|+++|++||++++|+.|-||.+..+   ++...+.+|...|..
T Consensus        81 FD~t~~Iw~k~~~efecv~~l-----EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~  155 (312)
T KOG0645|consen   81 FDATVVIWKKEDGEFECVATL-----EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH  155 (312)
T ss_pred             ccceEEEeecCCCceeEEeee-----eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence            999999998776544322111     248899999999999999999999999999998744   456667888889999


Q ss_pred             EEecCCCCeEEEeeCCCeEEEEEccC---CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          160 MDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      +.|+|...+|++++.|.+|++|+-..   -++..++..++ ..|.+++|++.|..     ++++++|++++||-..+.- 
T Consensus       156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~-~TVW~~~F~~~G~r-----l~s~sdD~tv~Iw~~~~~~-  228 (312)
T KOG0645|consen  156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE-NTVWSLAFDNIGSR-----LVSCSDDGTVSIWRLYTDL-  228 (312)
T ss_pred             EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc-ceEEEEEecCCCce-----EEEecCCcceEeeeeccCc-
Confidence            99999999999999999999998762   35677777554 58999999999977     8999999999999876321 


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc------eEeecccccccccceeeEEEecC-CeEEEEEecC
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLGTSIALVEFCPT-QRVVLTASKE  309 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d  309 (340)
                         -..|..++..+.|.  ...|++++.|+.|++|.-...      +.+......| +..|++++|+|. .+.|++|++|
T Consensus       229 ---~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH-e~dVNsV~w~p~~~~~L~s~~DD  302 (312)
T KOG0645|consen  229 ---SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH-EVDVNSVQWNPKVSNRLASGGDD  302 (312)
T ss_pred             ---chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc-ccccceEEEcCCCCCceeecCCC
Confidence               23456788889998  558999999999999976542      2222334556 569999999995 6789999999


Q ss_pred             CcEEEEEec
Q 019482          310 WGAMITKLT  318 (340)
Q Consensus       310 g~i~iw~~~  318 (340)
                      |.+++|.+.
T Consensus       303 G~v~~W~l~  311 (312)
T KOG0645|consen  303 GIVNFWELE  311 (312)
T ss_pred             ceEEEEEec
Confidence            999999975

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.3e-38  Score=236.26  Aligned_cols=282  Identities=16%  Similarity=0.181  Sum_probs=237.5

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ++.|+.+.|.|   ++.++|+|+      .|..|.+|+...+.+..       ..+++|.++|..+.|.+|++.+++++.
T Consensus        47 ~geI~~~~F~P---~gs~~aSgG------~Dr~I~LWnv~gdceN~-------~~lkgHsgAVM~l~~~~d~s~i~S~gt  110 (338)
T KOG0265|consen   47 KGEIYTIKFHP---DGSCFASGG------SDRAIVLWNVYGDCENF-------WVLKGHSGAVMELHGMRDGSHILSCGT  110 (338)
T ss_pred             cceEEEEEECC---CCCeEeecC------CcceEEEEeccccccce-------eeeccccceeEeeeeccCCCEEEEecC
Confidence            68999999999   445777776      66669999976444333       457799999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      |.+++.||.++++...+...       |..-|..+.-+.-| .++.+++.|+++++||+++.+.+..+ ...-+++++.|
T Consensus       111 Dk~v~~wD~~tG~~~rk~k~-------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~f  182 (338)
T KOG0265|consen  111 DKTVRGWDAETGKRIRKHKG-------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVGF  182 (338)
T ss_pred             CceEEEEecccceeeehhcc-------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEEe
Confidence            99999999999998776654       77778887744433 46788999999999999988777655 34558999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc----EEe
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KIG  238 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~  238 (340)
                      ..++..+.+|+-|+.|++||++.+.....+.++ ..+|+.+..+|+|..     +.+.+.|.++++||++...    ++.
T Consensus       183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~gs~-----llsnsMd~tvrvwd~rp~~p~~R~v~  256 (338)
T KOG0265|consen  183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRYGSF-----LLSNSMDNTVRVWDVRPFAPSQRCVK  256 (338)
T ss_pred             cccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccCCCc-----cccccccceEEEEEecccCCCCceEE
Confidence            999999999999999999999999999999865 468999999999998     7899999999999998543    355


Q ss_pred             eeeccC----CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482          239 HKRLLR----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (340)
Q Consensus       239 ~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  314 (340)
                      .+.++.    ......+|+|+++++.+|+.|..+++||......+..+ .+| ...|+.++|+|...+|.+++.|.+|++
T Consensus       257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh-~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGH-YGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence            555543    34567899999999999999999999999988888776 477 579999999999999999999999887


Q ss_pred             EEe
Q 019482          315 TKL  317 (340)
Q Consensus       315 w~~  317 (340)
                      =.+
T Consensus       335 gei  337 (338)
T KOG0265|consen  335 GEI  337 (338)
T ss_pred             ecc
Confidence            443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.7e-39  Score=249.57  Aligned_cols=270  Identities=18%  Similarity=0.227  Sum_probs=237.9

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .|.....+.+|..+|+.+-|+|+-..++++++|++|++||..+++....+.+       |...+.+++|+..|++|++++
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-------Ht~sv~di~~~a~Gk~l~tcS  169 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-------HTDSVFDISFDASGKYLATCS  169 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-------cccceeEEEEecCccEEEecC
Confidence            3455567888999999999999999999999999999999999987555543       778899999999999999999


Q ss_pred             CCCcEEEEeCCC-CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          132 VDGHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       132 ~dg~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      .|-.+++||..+ .+++....+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.++. +.+..++.+.||.
T Consensus       170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~-ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS-EWVRMVRVNQDGT  248 (406)
T ss_pred             CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCch-HhEEEEEecCCee
Confidence            999999999987 45666777788899999999999999999999999999999999999998655 5899999999998


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC---------------CCEEEEeeCCCcEEEEeccC
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD---------------GKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~i~d~~~  275 (340)
                      .     +++++.|.++++|-+.++++...++.|+.++.+++|.|.               +.++.+++.|+.|++||+.+
T Consensus       249 i-----~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t  323 (406)
T KOG0295|consen  249 I-----IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST  323 (406)
T ss_pred             E-----EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC
Confidence            7     899999999999999999888899999999999999763               25899999999999999999


Q ss_pred             ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          276 MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       276 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      +.++..+ .+| .+.|.+++|+|.|+||+++.+|+++++|+++....   .+....|.+-|+++
T Consensus       324 g~cL~tL-~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c---mk~~~ah~hfvt~l  382 (406)
T KOG0295|consen  324 GMCLFTL-VGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC---MKTLEAHEHFVTSL  382 (406)
T ss_pred             CeEEEEE-ecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEecccee---eeccCCCcceeEEE
Confidence            9999887 467 68999999999999999999999999999987664   33344666655543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.7e-39  Score=259.36  Aligned_cols=282  Identities=17%  Similarity=0.226  Sum_probs=241.4

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      --|.++.|.|..  ..|+++|+      .|+.|+||++-..       ..+..++.+|..+|.+++|+++|..+++++.|
T Consensus       215 kgvsai~~fp~~--~hLlLS~g------mD~~vklW~vy~~-------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD  279 (503)
T KOG0282|consen  215 KGVSAIQWFPKK--GHLLLSGG------MDGLVKLWNVYDD-------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFD  279 (503)
T ss_pred             cccchhhhccce--eeEEEecC------CCceEEEEEEecC-------cceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence            458899999953  36777665      6777999998643       34557899999999999999999999999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      +.+++||++++++...+..        ...+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-
T Consensus       280 ~~lKlwDtETG~~~~~f~~--------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~  351 (503)
T KOG0282|consen  280 RFLKLWDTETGQVLSRFHL--------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV  351 (503)
T ss_pred             eeeeeeccccceEEEEEec--------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence            9999999999998877743        3577999999988 789999999999999999999999888888899999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc---EEeee
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHK  240 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~  240 (340)
                      ++|+++++++.|++++||+.+.+-+++...........++..+|+++.     ++.-+.|+.|.+|.+...-   ....+
T Consensus       352 ~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-----~~aQs~dN~i~ifs~~~~~r~nkkK~f  426 (503)
T KOG0282|consen  352 DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-----FAAQSMDNYIAIFSTVPPFRLNKKKRF  426 (503)
T ss_pred             cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-----ehhhccCceEEEEecccccccCHhhhh
Confidence            999999999999999999999888877666555566889999999997     7888999999999976432   22345


Q ss_pred             eccC--CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC-eEEEEEecCCcEEEEE
Q 019482          241 RLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITK  316 (340)
Q Consensus       241 ~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~  316 (340)
                      .+|.  +.-..+.|||||++|++|+.||.+.+||.++.+.+..+. .| ..++..+.|+|.. ..+|+++.||.|++|+
T Consensus       427 eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  427 EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-AH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-cC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence            5554  445678999999999999999999999999999888774 56 6799999999965 6899999999999996

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1e-37  Score=240.57  Aligned_cols=286  Identities=13%  Similarity=0.107  Sum_probs=249.1

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      -+-|.|+++.|.   ..++++|+      .|+++.||++.        +..+..++.||...|..+++|+--.|+++++.
T Consensus       151 lgWVr~vavdP~---n~wf~tgs------~DrtikIwDla--------tg~LkltltGhi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  151 LGWVRSVAVDPG---NEWFATGS------ADRTIKIWDLA--------TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             cceEEEEeeCCC---ceeEEecC------CCceeEEEEcc--------cCeEEEeecchhheeeeeeecccCceEEEecC
Confidence            367899999994   35788777      45569999998        78888999999999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      |+.|+.||++.++.+..+..       |-..|+|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.
T Consensus       214 dk~VKCwDLe~nkvIR~YhG-------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~  286 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYHG-------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ  286 (460)
T ss_pred             CCeeEEEechhhhhHHHhcc-------ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence            99999999999888776654       77999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (340)
                      |-...+++||.|++|++||++.++...++. ++...+.+++.+|....      ++++....|+-|++..+..+..+.+|
T Consensus       287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~------fASas~dnik~w~~p~g~f~~nlsgh  359 (460)
T KOG0285|consen  287 PTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENL------FASASPDNIKQWKLPEGEFLQNLSGH  359 (460)
T ss_pred             cCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhh------hhccCCccceeccCCccchhhccccc
Confidence            988889999999999999999999988887 55668999999999874      44445556999999999998889999


Q ss_pred             CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc----c--ccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR----L--HLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      ...+++++...|+ ++++|+++|.+.+||.+++...+....    +  ..+..|.+.+|...|..|++|..|.+|++|.-
T Consensus       360 ~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke  438 (460)
T KOG0285|consen  360 NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE  438 (460)
T ss_pred             cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence            9999999998776 888999999999999998765544311    1  11346899999999999999999999999987


Q ss_pred             cCCC
Q 019482          318 TVPA  321 (340)
Q Consensus       318 ~~~~  321 (340)
                      +...
T Consensus       439 De~a  442 (460)
T KOG0285|consen  439 DEHA  442 (460)
T ss_pred             cccc
Confidence            6443

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.3e-37  Score=227.43  Aligned_cols=261  Identities=12%  Similarity=0.172  Sum_probs=214.9

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      .+.|..++..|   +...+|       +.....|++|++...      .+.+..++++|.+.|+++.|..+|+.+++|++
T Consensus        40 dsqVNrLeiTp---dk~~LA-------aa~~qhvRlyD~~S~------np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse  103 (311)
T KOG0315|consen   40 DSQVNRLEITP---DKKDLA-------AAGNQHVRLYDLNSN------NPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE  103 (311)
T ss_pred             ccceeeEEEcC---Ccchhh-------hccCCeeEEEEccCC------CCCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence            35677777777   444566       334556999999754      34466789999999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc-cceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~i~~~~~  162 (340)
                      ||+++|||++.......+        ++..+|+++..+|+...|++|..+|.|++||+.+..+...+.... ..|.++..
T Consensus       104 Dgt~kIWdlR~~~~qR~~--------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v  175 (311)
T KOG0315|consen  104 DGTVKIWDLRSLSCQRNY--------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV  175 (311)
T ss_pred             CceEEEEeccCcccchhc--------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEE
Confidence            999999999985543332        477999999999999999999999999999999876655544433 48999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCee------EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-c
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVA------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-N  235 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~  235 (340)
                      .|||.+++.+...|++++|++-..+.      +..++ .+.+.+..+.+||++++     +++++.|.+++||+.++. +
T Consensus       176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~-----lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKY-----LATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             cCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcE-----EEeecCCceEEEEecCCcee
Confidence            99999999999999999999876543      33343 45567999999999998     899999999999999987 5


Q ss_pred             EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                      ....+.+|...+...+||.||+||++|+.|+.+++||+..++.++.. .+|+. ...+++.
T Consensus       250 le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy-~gh~K-~~vc~~l  308 (311)
T KOG0315|consen  250 LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY-QGHHK-AAVCVAL  308 (311)
T ss_pred             eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec-CCccc-ccEEEEe
Confidence            66678888899999999999999999999999999999999988776 45643 4444443

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.6e-37  Score=246.99  Aligned_cols=316  Identities=17%  Similarity=0.211  Sum_probs=236.9

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      |+..+++-..++|   .+.++|+|..      .+.++||....+.      ..+..+++.-.++|..++|++++++|++.
T Consensus        57 EH~~~vtVAkySP---sG~yiASGD~------sG~vRIWdtt~~~------hiLKnef~v~aG~I~Di~Wd~ds~RI~av  121 (603)
T KOG0318|consen   57 EHAHQVTVAKYSP---SGFYIASGDV------SGKVRIWDTTQKE------HILKNEFQVLAGPIKDISWDFDSKRIAAV  121 (603)
T ss_pred             cccceeEEEEeCC---CceEEeecCC------cCcEEEEeccCcc------eeeeeeeeecccccccceeCCCCcEEEEE
Confidence            5678899999999   4568998884      4559999887442      33445555566777788888877777765


Q ss_pred             ecC----CCEEEEEecCcee------------------------------eeeecccc----CCCCCCCCCeEEEEEecC
Q 019482           82 TTN----GGCKLFEVYGGAT------------------------------DINLLAKK----MPPLQDAGPQKCLSFSVD  123 (340)
Q Consensus        82 ~~d----~~i~iw~~~~~~~------------------------------~~~~~~~~----~~~~~~~~~v~~~~~~~~  123 (340)
                      ++.    |.+.+||.-+...                              ..-+...+    ...-.|..-|.|+.|+||
T Consensus       122 GEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD  201 (603)
T KOG0318|consen  122 GEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD  201 (603)
T ss_pred             ecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC
Confidence            543    3555666432110                              00000000    111237789999999999


Q ss_pred             CCeEEEccCCCcEEEEeCCCCceeeccc---cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-------
Q 019482          124 GSRFAAGGVDGHLRIMHWPSLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-------  193 (340)
Q Consensus       124 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------  193 (340)
                      |+++++++.||++.+||-.+++.+..+.   .|.+.|.++.|+||++.+++++.|.+++|||+.+.++++++.       
T Consensus       202 G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d  281 (603)
T KOG0318|consen  202 GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED  281 (603)
T ss_pred             CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence            9999999999999999999999888776   788899999999999999999999999999998766554421       


Q ss_pred             -----------------------------------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE--
Q 019482          194 -----------------------------------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--  236 (340)
Q Consensus       194 -----------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--  236 (340)
                                                         ..|...|+++..+|++++     +++++.||.|.-||..++..  
T Consensus       282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~-----i~SgsyDG~I~~W~~~~g~~~~  356 (603)
T KOG0318|consen  282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT-----IYSGSYDGHINSWDSGSGTSDR  356 (603)
T ss_pred             eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE-----EEeeccCceEEEEecCCccccc
Confidence                                               134467999999999987     78999999999999754211  


Q ss_pred             -----------------------------Eee------------------------------------------eecc--
Q 019482          237 -----------------------------IGH------------------------------------------KRLL--  243 (340)
Q Consensus       237 -----------------------------~~~------------------------------------------~~~~--  243 (340)
                                                   ++.                                          +..+  
T Consensus       357 ~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~  436 (603)
T KOG0318|consen  357 LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK  436 (603)
T ss_pred             cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc
Confidence                                         000                                          0000  


Q ss_pred             ------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec-ccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          244 ------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW-SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       244 ------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                            .....+++++|++.++++|++|+.|+||.+...+.... ....| ..+|+.+++|||+.+||++...+.+.+|+
T Consensus       437 ~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h-~a~iT~vaySpd~~yla~~Da~rkvv~yd  515 (603)
T KOG0318|consen  437 VSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEH-RAAITDVAYSPDGAYLAAGDASRKVVLYD  515 (603)
T ss_pred             ceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecc-cCCceEEEECCCCcEEEEeccCCcEEEEE
Confidence                  12345788999999999999999999999988664333 23345 67999999999999999999999999999


Q ss_pred             ecCCCCCCCCccccccccccccCC
Q 019482          317 LTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       317 ~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                      +.....  ....+..|...|++||
T Consensus       516 ~~s~~~--~~~~w~FHtakI~~~a  537 (603)
T KOG0318|consen  516 VASREV--KTNRWAFHTAKINCVA  537 (603)
T ss_pred             cccCce--ecceeeeeeeeEEEEE
Confidence            976553  5567788999998875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=6.7e-38  Score=241.58  Aligned_cols=257  Identities=13%  Similarity=0.160  Sum_probs=232.5

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  132 (340)
                      ..+...+++|.+.|.|+++.|...+|++|+.|++++|||+.+++....+..       |...|..+++|+...|+++++.
T Consensus       141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG-------hi~~vr~vavS~rHpYlFs~ge  213 (460)
T KOG0285|consen  141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG-------HIETVRGVAVSKRHPYLFSAGE  213 (460)
T ss_pred             ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc-------hhheeeeeeecccCceEEEecC
Confidence            345567899999999999999999999999999999999999988766653       7789999999999999999999


Q ss_pred             CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (340)
                      |+.|+.||++..+.++.+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+..+.+ |..+|.++.+.|...+ 
T Consensus       214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dpq-  291 (460)
T KOG0285|consen  214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDPQ-  291 (460)
T ss_pred             CCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCCc-
Confidence            99999999999999999999999999999999999999999999999999999999999985 4568999999987776 


Q ss_pred             eEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~  292 (340)
                          +++++.|++|++||++.++....+..|...+.+++.+|....+|+++.|. |+-|++..+..+..+ .+| ..-|+
T Consensus       292 ----vit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl-sgh-~~iin  364 (460)
T KOG0285|consen  292 ----VITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL-SGH-NAIIN  364 (460)
T ss_pred             ----eEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc-ccc-cceee
Confidence                89999999999999999999999999999999999999999999998875 999999999988874 566 57899


Q ss_pred             eEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC
Q 019482          293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL  326 (340)
Q Consensus       293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  326 (340)
                      .++.+.|+ ++++|++.|.+..|+.+..-.++..
T Consensus       365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG  397 (460)
T ss_pred             eeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence            99998776 6899999999999999876655433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.5e-36  Score=279.63  Aligned_cols=290  Identities=13%  Similarity=0.121  Sum_probs=227.3

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~   81 (340)
                      +.+.|++++|+|   ++.++|+|+      .++.|++|++................+. +...|.+++|+| ++.+|+++
T Consensus       482 ~~~~V~~i~fs~---dg~~latgg------~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~  551 (793)
T PLN00181        482 SSNLVCAIGFDR---DGEFFATAG------VNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASS  551 (793)
T ss_pred             CCCcEEEEEECC---CCCEEEEEe------CCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEE
Confidence            467899999999   445677666      5666999997532111100111222333 346799999987 47899999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      +.||.|++||+.+++....+.       .|.+.|.+++|+| ++.+|++|+.|+.|++||++++..+..+. ++..+.++
T Consensus       552 ~~Dg~v~lWd~~~~~~~~~~~-------~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v  623 (793)
T PLN00181        552 NFEGVVQVWDVARSQLVTEMK-------EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-TKANICCV  623 (793)
T ss_pred             eCCCeEEEEECCCCeEEEEec-------CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-cCCCeEEE
Confidence            999999999998876655443       3788999999997 78899999999999999999888776664 34678999


Q ss_pred             EecC-CCCeEEEeeCCCeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC----
Q 019482          161 DFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----  234 (340)
Q Consensus       161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----  234 (340)
                      .|++ ++.+|++|+.|+.|++||+++.+ .+..+. .|...|.++.|. ++..     +++++.|+.|++||++.+    
T Consensus       624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~-----lvs~s~D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSST-----LVSSSTDNTLKLWDLSMSISGI  696 (793)
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCE-----EEEEECCCEEEEEeCCCCcccc
Confidence            9954 79999999999999999998765 344554 455689999997 4554     788899999999999743    


Q ss_pred             --cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc-----------ccccccceeeEEEecCCe
Q 019482          235 --NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-----------RLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       235 --~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~~~~i~~~~~~~~~~  301 (340)
                        .++..+.+|...+..++|+|++.+|++|+.|+.|++|+.....+.....           ..+....|.+++|+|++.
T Consensus       697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~  776 (793)
T PLN00181        697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS  776 (793)
T ss_pred             CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence              5677788898899999999999999999999999999986554321110           111235799999999999


Q ss_pred             EEEEEecCCcEEEEEe
Q 019482          302 VVLTASKEWGAMITKL  317 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~~  317 (340)
                      .|++|+.||.|+||++
T Consensus       777 ~lva~~~dG~I~i~~~  792 (793)
T PLN00181        777 TLVAANSTGNIKILEM  792 (793)
T ss_pred             eEEEecCCCcEEEEec
Confidence            9999999999999986

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=2.2e-38  Score=233.06  Aligned_cols=287  Identities=13%  Similarity=0.153  Sum_probs=244.3

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      .-||..++|+|-.+++.+|++.+..+.      -.+-+=+        +....-++.||.+.|.....+.+-..-|+++.
T Consensus        14 trpvvdl~~s~itp~g~flisa~kd~~------pmlr~g~--------tgdwigtfeghkgavw~~~l~~na~~aasaaa   79 (334)
T KOG0278|consen   14 TRPVVDLAFSPITPDGYFLISASKDGK------PMLRNGD--------TGDWIGTFEGHKGAVWSATLNKNATRAASAAA   79 (334)
T ss_pred             CcceeEEeccCCCCCceEEEEeccCCC------chhccCC--------CCCcEEeeeccCcceeeeecCchhhhhhhhcc
Confidence            578999999997778888886664332      2211111        44456789999999999999988888999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~  162 (340)
                      |-+-++||.-++.....+        +|..-|..++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.|
T Consensus        80 dftakvw~a~tgdelhsf--------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~w  151 (334)
T KOG0278|consen   80 DFTAKVWDAVTGDELHSF--------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW  151 (334)
T ss_pred             cchhhhhhhhhhhhhhhh--------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence            999999999887754443        577889999999999999999999999999998654 45667788889999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      ....+.|++++.|++||+||.++++.++.+...  .+|+++..+++|+      +++....+.|.+||..+...++.++.
T Consensus       152 c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG~------ilTia~gssV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  152 CHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDGR------ILTIAYGSSVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             eccCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCCC------EEEEecCceeEEeccccccceeeccC
Confidence            998889999999999999999999999999754  4699999999999      46667788899999999988877664


Q ss_pred             cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                       ...|.+.+++|+...+++|++|..++.||..+++.+.....+| -++|.++.|+|||...++||.||+|++|.....+.
T Consensus       224 -P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  224 -PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             -ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence             3478999999999999999999999999999999888766777 47999999999999999999999999999875553

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-36  Score=225.68  Aligned_cols=268  Identities=15%  Similarity=0.179  Sum_probs=219.7

Q ss_pred             eeEEEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           55 VTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      ....+++|.+.+..++|+|- |..||+++.|+.|++|+...+..   ........-.|...|+.++|+|.|++|++|+.|
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s---~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD   82 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS---WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD   82 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc---EEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence            45678899999999999997 88999999999999999985221   111111122488999999999999999999999


Q ss_pred             CcEEEEeCCC--CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC---eeEEEeecCCCCceeeEEEccC
Q 019482          134 GHLRIMHWPS--LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKD  208 (340)
Q Consensus       134 g~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~  208 (340)
                      .++.||.-..  .+++..+.+|...|.+++|+++|++||++++|.+|-||.+..+   ++...+..| ...|..+.|+|.
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK~V~WHPt  161 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVKHVIWHPT  161 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cccccEEEEcCC
Confidence            9999997653  3678888899999999999999999999999999999999754   445566544 457999999998


Q ss_pred             CCcceEEEEEecCCcceEEEEECC---CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDIS---TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                      ...     +++++.|++|++|+-.   ...+++.+.+|...+.+++|+|.|..|++++.|+.++||-+.+     .+...
T Consensus       162 ~dl-----L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~  231 (312)
T KOG0645|consen  162 EDL-----LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGM  231 (312)
T ss_pred             cce-----eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccchh
Confidence            876     8999999999999876   4457888999999999999999999999999999999998763     23334


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC----ccccccccccccC
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL----SLPLLHSHSQNSV  339 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~h~~~v~~v  339 (340)
                      | ..++..++|.  ...|++++.|+.|+++.-......+.+    +....|...||+|
T Consensus       232 ~-sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV  286 (312)
T KOG0645|consen  232 H-SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV  286 (312)
T ss_pred             c-ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence            4 5689999998  457999999999999987643222222    3566788888876

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-37  Score=243.89  Aligned_cols=289  Identities=13%  Similarity=0.120  Sum_probs=237.1

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      ++..+|.-+.|++   ++..+|+++      .|.+..+|.+..+..     .....++.+|..+|..+.||||.++|+++
T Consensus       222 ~htdEVWfl~FS~---nGkyLAsaS------kD~Taiiw~v~~d~~-----~kl~~tlvgh~~~V~yi~wSPDdryLlaC  287 (519)
T KOG0293|consen  222 DHTDEVWFLQFSH---NGKYLASAS------KDSTAIIWIVVYDVH-----FKLKKTLVGHSQPVSYIMWSPDDRYLLAC  287 (519)
T ss_pred             hCCCcEEEEEEcC---CCeeEeecc------CCceEEEEEEecCcc-----eeeeeeeecccCceEEEEECCCCCeEEec
Confidence            3567899999999   556788766      555689999886653     34567899999999999999999999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc-cceeEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDM  160 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~i~~~  160 (340)
                      +.+..+.+||+.++.....+..      .+...+.+.+|.|||..+++|+.|+++..||+.... .....+.. ..|.++
T Consensus       288 g~~e~~~lwDv~tgd~~~~y~~------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dl  360 (519)
T KOG0293|consen  288 GFDEVLSLWDVDTGDLRHLYPS------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDL  360 (519)
T ss_pred             CchHheeeccCCcchhhhhccc------CcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEE
Confidence            9999999999999987554432      145688999999999999999999999999987533 33333333 369999


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      +..+||+++++...|..+++++.++........  ...+++++..|.++++     ++..-.+..+++||+.....+..+
T Consensus       361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~-----~LvnL~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKL-----ALVNLQDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             EEcCCCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcE-----EEEEcccCeeEEeecchhhHHHHh
Confidence            999999999999999999999998766654444  2347999999999997     667778999999999988888888


Q ss_pred             eccCCC--eeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC-eEEEEEecCCcEEEEE
Q 019482          241 RLLRKP--ASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITK  316 (340)
Q Consensus       241 ~~~~~~--i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~  316 (340)
                      .+|...  +-.-+|-- +..++++|++|++|+||+..+++++..+ .+| ...|++++|+|.. .++|++|+||+|+||.
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L-sGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL-SGH-SKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee-cCC-cceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            877643  33334543 5589999999999999999999999887 578 5799999999965 6899999999999998


Q ss_pred             ecCC
Q 019482          317 LTVP  320 (340)
Q Consensus       317 ~~~~  320 (340)
                      ...+
T Consensus       512 ~~~~  515 (519)
T KOG0293|consen  512 PSDN  515 (519)
T ss_pred             CCcc
Confidence            7654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-37  Score=253.09  Aligned_cols=283  Identities=12%  Similarity=0.143  Sum_probs=251.0

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ...+|.|+.++|..+  -+++       +-.++.+.||+++        +......++..+-+|++..|-+..+.+++|+
T Consensus        12 rSdRVKsVd~HPteP--w~la-------~LynG~V~IWnye--------tqtmVksfeV~~~PvRa~kfiaRknWiv~Gs   74 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEP--WILA-------ALYNGDVQIWNYE--------TQTMVKSFEVSEVPVRAAKFIARKNWIVTGS   74 (794)
T ss_pred             cCCceeeeecCCCCc--eEEE-------eeecCeeEEEecc--------cceeeeeeeecccchhhheeeeccceEEEec
Confidence            467899999999654  3444       4466779999999        6667777888889999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-ceeeccccCccceeEEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMD  161 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~i~~~~  161 (340)
                      .|..|+||+..+.+....+..       |...|++++.+|...++++++.|-+|++||.+.. .+.+.+.+|..-|.+++
T Consensus        75 DD~~IrVfnynt~ekV~~FeA-------H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~  147 (794)
T KOG0276|consen   75 DDMQIRVFNYNTGEKVKTFEA-------HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA  147 (794)
T ss_pred             CCceEEEEecccceeeEEeec-------cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence            999999999999998887764       8899999999999999999999999999999754 56778888888999999


Q ss_pred             ecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       162 ~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      |+| |.+.+++++-|++|++|.+.+..+..++.+|. ..|+++.+-+.|..++   ++++++|..+++||..+..+++++
T Consensus       148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe-kGVN~Vdyy~~gdkpy---lIsgaDD~tiKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE-KGVNCVDYYTGGDKPY---LISGADDLTIKVWDYQTKSCVQTL  223 (794)
T ss_pred             ecCCCccceeeeeccccEEEEEcCCCCCceeeeccc-cCcceEEeccCCCcce---EEecCCCceEEEeecchHHHHHHh
Confidence            999 78899999999999999999999999998554 5699999999987766   699999999999999999999999


Q ss_pred             eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  315 (340)
                      .+|...|..+.|+|.-..+++|++||+++||+..+.+....+..+-  ..+++++-.+.++.++.|.++|.+.+-
T Consensus       224 eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v~  296 (794)
T KOG0276|consen  224 EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTVK  296 (794)
T ss_pred             hcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEEE
Confidence            9999999999999999999999999999999999988887775443  589999999988889999888877553

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-36  Score=260.96  Aligned_cols=260  Identities=20%  Similarity=0.221  Sum_probs=220.7

Q ss_pred             eEEEecC-CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482           56 TYVFDES-EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        56 ~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  132 (340)
                      ...+.+| ...|.++.|+|+|+.+++++.++.+++|+....+.  ...+       ..|...|.+++|+|+++++++++.
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-------~~h~~~v~~~~fs~d~~~l~s~s~  223 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-------SGHTRGVSDVAFSPDGSYLLSGSD  223 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-------cccccceeeeEECCCCcEEEEecC
Confidence            4555554 77899999999999999999999999999965552  2111       358899999999999999999999


Q ss_pred             CCcEEEEeC-CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          133 DGHLRIMHW-PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       133 dg~i~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      |++|++||+ ..+..+..+.+|...|++++|+|+++++++|+.|++|++||+++++++..+..+. ..|.+++|++++..
T Consensus       224 D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs-~~is~~~f~~d~~~  302 (456)
T KOG0266|consen  224 DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS-DGISGLAFSPDGNL  302 (456)
T ss_pred             CceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-CceEEEEECCCCCE
Confidence            999999999 4557888888999999999999999999999999999999999999999998655 58999999999998


Q ss_pred             ceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCC--eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKP--ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL  287 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  287 (340)
                           +++++.|+.|++||+.++.  +...+..+...  ++++.|+|++++++++..|+.+++||+..+....... .|.
T Consensus       303 -----l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~  376 (456)
T KOG0266|consen  303 -----LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHS  376 (456)
T ss_pred             -----EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccC
Confidence                 7888889999999999999  45566665544  9999999999999999999999999999988877664 443


Q ss_pred             cc--ceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccc
Q 019482          288 GT--SIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLH  332 (340)
Q Consensus       288 ~~--~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h  332 (340)
                      ..  .+.+...++.+.++++|+.|+.|.+|++....   .......|
T Consensus       377 ~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---~~~~l~~h  420 (456)
T KOG0266|consen  377 NLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---ILQRLEGH  420 (456)
T ss_pred             CcceeEecccccCCCCeEEEEeCCceEEEEeCCccc---hhhhhcCC
Confidence            33  45555667899999999999999999997533   34455555

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-36  Score=254.62  Aligned_cols=285  Identities=16%  Similarity=0.190  Sum_probs=237.2

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      .+|+.++|-.+.+  ..+|.      ++....+++|+..        ...+ ..+.||++.|.++....+|.+|++|+.|
T Consensus       324 dEI~Dm~~lG~e~--~~laV------ATNs~~lr~y~~~--------~~~c-~ii~GH~e~vlSL~~~~~g~llat~sKD  386 (775)
T KOG0319|consen  324 DEILDMKFLGPEE--SHLAV------ATNSPELRLYTLP--------TSYC-QIIPGHTEAVLSLDVWSSGDLLATGSKD  386 (775)
T ss_pred             hhheeeeecCCcc--ceEEE------EeCCCceEEEecC--------CCce-EEEeCchhheeeeeecccCcEEEEecCC
Confidence            5677888876443  33333      3345569999554        2333 3689999999999966688999999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCcee---------eccccCc
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRII---------LDEPKAH  154 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~---------~~~~~~~  154 (340)
                      .++++|.++.+........   ....|.+.|.+++++..+ .+|++++.|.++++|++...+..         .....|.
T Consensus       387 ~svilWr~~~~~~~~~~~a---~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHd  463 (775)
T KOG0319|consen  387 KSVILWRLNNNCSKSLCVA---QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHD  463 (775)
T ss_pred             ceEEEEEecCCcchhhhhh---hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhc
Confidence            9999999955443222221   223588999999997744 58999999999999999762211         1233567


Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  234 (340)
                      ..|++++++|+.++++|||.|.+.+||++++.+...++.+|. ..+.++.|+|..+.     +++++.|.+|+||.+.+.
T Consensus       464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~-RGvw~V~Fs~~dq~-----laT~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  464 KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT-RGVWCVSFSKNDQL-----LATCSGDKTVKIWSISTF  537 (775)
T ss_pred             ccccceEecCCCceEEecccccceeeecccCceEEEEeeCCc-cceEEEEeccccce-----eEeccCCceEEEEEeccc
Confidence            799999999999999999999999999999988888888665 46999999999886     899999999999999999


Q ss_pred             cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (340)
Q Consensus       235 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  314 (340)
                      .+++++.+|...|..+.|-.+|+.|++++.||.|++|++++++++..+. .| .+.|++++-+|.+.++++|+.||.|.+
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~~  615 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-AH-NDRVWALSVSPLLDMFVTGGGDGRIIF  615 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-hc-cceeEEEeecCccceeEecCCCeEEEE
Confidence            9999999999999999999999999999999999999999999999884 67 689999999999999999999999999


Q ss_pred             EEe
Q 019482          315 TKL  317 (340)
Q Consensus       315 w~~  317 (340)
                      |.=
T Consensus       616 wkD  618 (775)
T KOG0319|consen  616 WKD  618 (775)
T ss_pred             eec
Confidence            964

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-36  Score=222.30  Aligned_cols=248  Identities=17%  Similarity=0.173  Sum_probs=216.7

Q ss_pred             eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  135 (340)
                      ...+..|+++|.++.|+-+|+|.++++.|.+|++|+...+..+..+..       |...|..++.+.|+..|++++.|..
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------hG~EVlD~~~s~Dnskf~s~GgDk~   82 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------HGHEVLDAALSSDNSKFASCGGDKA   82 (307)
T ss_pred             ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-------CCceeeeccccccccccccCCCCce
Confidence            356789999999999999999999999999999999999988877754       7789999999999999999999999


Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC--eeEEEeecCCCCceeeEEEccCCCcce
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      +.+||+++|+...++.+|..+|+.++|+.+...+++|+.|.++++||.++.  ++++.+.... ..|.++......    
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~-D~V~Si~v~~he----  157 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK-DGVSSIDVAEHE----  157 (307)
T ss_pred             EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc-CceeEEEecccE----
Confidence            999999999999999999999999999999999999999999999999864  5666665443 468888876442    


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc-ccee
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG-TSIA  292 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~i~  292 (340)
                         +++++.||+++.||++.|+...  .....+|++++|++|++..++++.|+.+++.|-.+|+.+..+. +|.. ..-.
T Consensus       158 ---IvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykl  231 (307)
T KOG0316|consen  158 ---IVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKL  231 (307)
T ss_pred             ---EEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeee
Confidence               7999999999999999998753  3445689999999999999999999999999999999998774 5532 2345


Q ss_pred             eEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          293 LVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ..+++.....+++|++||.|++|++....
T Consensus       232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  232 DCCLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             eeeecccceeEEeccCCceEEEEEeccce
Confidence            66788888899999999999999997554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-36  Score=252.12  Aligned_cols=304  Identities=14%  Similarity=0.180  Sum_probs=247.3

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC--eEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~   80 (340)
                      +..||.-++|.|.   ..+++.|+      .++.+++|++.        ...+...|+||.+.|.++.|+|+-.  .|++
T Consensus       104 He~Pvi~ma~~~~---g~LlAtgg------aD~~v~VWdi~--------~~~~th~fkG~gGvVssl~F~~~~~~~lL~s  166 (775)
T KOG0319|consen  104 HEAPVITMAFDPT---GTLLATGG------ADGRVKVWDIK--------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS  166 (775)
T ss_pred             cCCCeEEEEEcCC---CceEEecc------ccceEEEEEee--------CCEEEEEecCCCceEEEEEeCCccchhheee
Confidence            5789999999994   46788777      67779999998        7788899999999999999999765  5889


Q ss_pred             EecCCCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee-----------
Q 019482           81 STTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL-----------  148 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-----------  148 (340)
                      |..|+.+++||+.+... .....       .|.+.|+++.|++|+..++++++|..+.+||+.+.+...           
T Consensus       167 g~~D~~v~vwnl~~~~tcl~~~~-------~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v  239 (775)
T KOG0319|consen  167 GATDGTVRVWNLNDKRTCLHTMI-------LHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV  239 (775)
T ss_pred             cCCCceEEEEEcccCchHHHHHH-------hhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE
Confidence            99999999999986654 22211       377889999999998888888888888888873210000           


Q ss_pred             --------------------------------------------------------------------------------
Q 019482          149 --------------------------------------------------------------------------------  148 (340)
Q Consensus       149 --------------------------------------------------------------------------------  148 (340)
                                                                                                      
T Consensus       240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i  319 (775)
T KOG0319|consen  240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI  319 (775)
T ss_pred             EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence                                                                                            


Q ss_pred             ----------------------------------------ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482          149 ----------------------------------------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       149 ----------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  188 (340)
                                                              .+.+|.+.|.++....+|-+|++|+.|.++++|.++++..
T Consensus       320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~  399 (775)
T KOG0319|consen  320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS  399 (775)
T ss_pred             cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence                                                    0234555677777545667888999999999996632110


Q ss_pred             ------------------------------------EEE-------------------eecCCCCceeeEEEccCCCcce
Q 019482          189 ------------------------------------WTF-------------------LTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       189 ------------------------------------~~~-------------------~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                                                          ++.                   ....|+..|++++.+|+.+.  
T Consensus       400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL--  477 (775)
T KOG0319|consen  400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL--  477 (775)
T ss_pred             hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce--
Confidence                                                000                   01134557899999999987  


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                         +++++.|.+.++|++........+.+|...+.++.|+|..+.++++|.|++|+||.+.+..++..+ .+| ...|..
T Consensus       478 ---iAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~-eGH-~~aVlr  552 (775)
T KOG0319|consen  478 ---IATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF-EGH-TSAVLR  552 (775)
T ss_pred             ---EEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee-cCc-cceeEe
Confidence               899999999999999999999999999999999999999999999999999999999999999988 477 689999


Q ss_pred             EEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482          294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       294 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                      +.|-.+|..|++++.||-+++|+++...   .......|.+.|.+++
T Consensus       553 a~F~~~~~qliS~~adGliKlWnikt~e---C~~tlD~H~DrvWaL~  596 (775)
T KOG0319|consen  553 ASFIRNGKQLISAGADGLIKLWNIKTNE---CEMTLDAHNDRVWALS  596 (775)
T ss_pred             eeeeeCCcEEEeccCCCcEEEEeccchh---hhhhhhhccceeEEEe
Confidence            9999999999999999999999997655   5677888999888764

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-36  Score=258.23  Aligned_cols=284  Identities=15%  Similarity=0.218  Sum_probs=242.7

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      +.+|..++|+|..+   .+.++-      ..+.|++|++.        -..+...+.+|+++|..++|+|++.++++|+.
T Consensus         9 SsRvKglsFHP~rP---wILtsl------HsG~IQlWDYR--------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGD   71 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRP---WILTSL------HSGVIQLWDYR--------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD   71 (1202)
T ss_pred             cccccceecCCCCC---EEEEee------cCceeeeehhh--------hhhHHhhhhccCCccceeeecCCCCeEEecCC
Confidence            57899999999654   444333      55669999998        34445668899999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      |..|++|+....++...+.+       |-..|+.+.|++.-.+|++++.|.+|+||+..+++++..+.+|...|.|..|+
T Consensus        72 DykIkVWnYk~rrclftL~G-------HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh  144 (1202)
T KOG0292|consen   72 DYKIKVWNYKTRRCLFTLLG-------HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH  144 (1202)
T ss_pred             ccEEEEEecccceehhhhcc-------ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence            99999999999988777654       88999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccC--------C--------------------eeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          164 LDSEFLATTSTDGSARIWKTED--------G--------------------VAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~--------~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      |....++++|-|.+||+||+..        +                    ..++.+..+|+..|+-++|+|.-..    
T Consensus       145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl----  220 (1202)
T KOG0292|consen  145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL----  220 (1202)
T ss_pred             CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce----
Confidence            9999999999999999999852        1                    1122233456667999999998876    


Q ss_pred             EEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482          216 CTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                       ++++++|..|++|.....+  .+.+.++|.++|.++-|+|..+++++.++|++|++||+.....++.+...+  +.-+.
T Consensus       221 -iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren--dRFW~  297 (1202)
T KOG0292|consen  221 -IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN--DRFWI  297 (1202)
T ss_pred             -EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC--CeEEE
Confidence             8999999999999987654  456678999999999999999999999999999999999998888876554  58999


Q ss_pred             EEEecCCeEEEEEecCCcEEEEEecC
Q 019482          294 VEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       294 ~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ++-+|..+++++| .|+.+.|+.++.
T Consensus       298 laahP~lNLfAAg-HDsGm~VFkleR  322 (1202)
T KOG0292|consen  298 LAAHPELNLFAAG-HDSGMIVFKLER  322 (1202)
T ss_pred             EEecCCcceeeee-cCCceEEEEEcc
Confidence            9999999866655 677788898873

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.5e-35  Score=241.49  Aligned_cols=263  Identities=21%  Similarity=0.283  Sum_probs=222.1

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEE
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  137 (340)
                      .+++|.++|.+++|+|++++|++++.++.+++|++.+.+......       .|...+..+.|+|+++++++++.+|.|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~~i~   76 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-------GHTGPVRDVAASADGTYLASGSSDKTIR   76 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-------cCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence            466899999999999999999999999999999998776443332       2567788999999999999999999999


Q ss_pred             EEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      +|++.+++....+..+...+.++.|+|+++++++++.|+.+++||+++++....+. .+...+.+++|+|++..     +
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~-----l  150 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTF-----V  150 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCE-----E
Confidence            99999887777777777799999999998888888889999999999888887776 34567999999999774     5


Q ss_pred             EecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  297 (340)
                      ++++.++.|++||+++++.+..+..+...+.++.|+|+++.+++++.|+.|++||+++++....+. .| ...+.+++|+
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~-~~~i~~~~~~  228 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GH-ENGVNSVAFS  228 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hc-CCceEEEEEc
Confidence            566669999999999988888888888899999999999999999999999999999888776653 44 4689999999


Q ss_pred             cCCeEEEEEecCCcEEEEEecCCCCCCCCcccccccccccc
Q 019482          298 PTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNS  338 (340)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~  338 (340)
                      |++.++++++.||.+++|++.....   ......|...+.+
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~---~~~~~~~~~~i~~  266 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGEC---VQTLSGHTNSVTS  266 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCcee---EEEccccCCcEEE
Confidence            9999999988899999999975432   2223355555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.2e-37  Score=236.09  Aligned_cols=271  Identities=15%  Similarity=0.178  Sum_probs=224.9

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ...|+|+.+..     ..+++|.      .|++|++|+.+        +..+...+.||++.|.|+.|.  .+.+++|+.
T Consensus       197 skgVYClQYDD-----~kiVSGl------rDnTikiWD~n--------~~~c~~~L~GHtGSVLCLqyd--~rviisGSS  255 (499)
T KOG0281|consen  197 SKGVYCLQYDD-----EKIVSGL------RDNTIKIWDKN--------SLECLKILTGHTGSVLCLQYD--ERVIVSGSS  255 (499)
T ss_pred             CCceEEEEecc-----hhhhccc------ccCceEEeccc--------cHHHHHhhhcCCCcEEeeecc--ceEEEecCC
Confidence            34578888765     2345444      68889999987        666677899999999999994  669999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce---eeccccCccceeEE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKSVLDM  160 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~i~~~  160 (340)
                      |.+|++||+++++....+..       |...|..+.|+.  .++++++.|.++.+||+.....   ...+.+|...|+.+
T Consensus       256 DsTvrvWDv~tge~l~tlih-------HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV  326 (499)
T KOG0281|consen  256 DSTVRVWDVNTGEPLNTLIH-------HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  326 (499)
T ss_pred             CceEEEEeccCCchhhHHhh-------hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence            99999999999998776654       788999999974  4999999999999999976542   33456788899999


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      .|+  .+++++++.|.+|++|++.+++.+.++.++.. .|.|+++  .++.     +++|+.|.+|++||+..|.++..+
T Consensus       327 dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rl-----vVSGSSDntIRlwdi~~G~cLRvL  396 (499)
T KOG0281|consen  327 DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRL-----VVSGSSDNTIRLWDIECGACLRVL  396 (499)
T ss_pred             ccc--cceEEEecCCceEEEEeccceeeehhhhcccc-cceehhc--cCeE-----EEecCCCceEEEEeccccHHHHHH
Confidence            997  66999999999999999999999999986654 5777766  4554     789999999999999999999999


Q ss_pred             eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc--------cccccccceeeEEEecCCeEEEEEecCCcE
Q 019482          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--------KRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  312 (340)
                      .+|+.-|.++.|  |.+.+++|+.||+|++||+..+...+..        ...| .+.|..+.|.  ...+++++.|.+|
T Consensus       397 eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQFD--~fqIvsssHddtI  471 (499)
T KOG0281|consen  397 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQFD--EFQIISSSHDDTI  471 (499)
T ss_pred             hchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEeec--ceEEEeccCCCeE
Confidence            999999999999  5679999999999999999886544211        1234 5689999884  5789999999999


Q ss_pred             EEEEecC
Q 019482          313 MITKLTV  319 (340)
Q Consensus       313 ~iw~~~~  319 (340)
                      .||++..
T Consensus       472 LiWdFl~  478 (499)
T KOG0281|consen  472 LIWDFLN  478 (499)
T ss_pred             EEEEcCC
Confidence            9999964

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.4e-35  Score=245.25  Aligned_cols=311  Identities=14%  Similarity=0.125  Sum_probs=260.6

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCC-cccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS-VYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      ...++.+++|.|.+...+-++       .-.+|.+..|.++..... ..+......++.||...|.+++++.+...+++|
T Consensus       319 ~~~kiks~dv~~~~~~~~~lv-------~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg  391 (888)
T KOG0306|consen  319 TSAKIKSFDVTPSGGTENTLV-------LLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG  391 (888)
T ss_pred             chhheeEEEEEecCCcceeEE-------EeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeec
Confidence            457889999999776555555       246888999999873322 222445567889999999999999888777776


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +. +.+++|+..+.+++..+..         +.+.+..|-|.++++++|...|.+.+||+.+...+.....|.+.|.+++
T Consensus       392 a~-~SikiWn~~t~kciRTi~~---------~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~  461 (888)
T KOG0306|consen  392 AG-ESIKIWNRDTLKCIRTITC---------GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS  461 (888)
T ss_pred             CC-CcEEEEEccCcceeEEecc---------ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence            65 4599999999998887743         5789999999999999999999999999999988888888999999999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccC-----CeeEEEee------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          162 FSLDSEFLATTSTDGSARIWKTED-----GVAWTFLT------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      .+||++.+++|+.|.+|++||+.-     +...+.+.      ......|.|+.+|||+++     ++.+--|+++++|-
T Consensus       462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-----LaVsLLdnTVkVyf  536 (888)
T KOG0306|consen  462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-----LAVSLLDNTVKVYF  536 (888)
T ss_pred             ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-----EEEEeccCeEEEEE
Confidence            999999999999999999999752     11111111      112356999999999997     67777899999999


Q ss_pred             CCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       231 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      +++.+....+.+|.-||.++..|||++.+++|+.|..|++|-+.-|.+.+.+. +| ++.|.++.|-|+...++++|.|+
T Consensus       537 lDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AH-dDSvm~V~F~P~~~~FFt~gKD~  614 (888)
T KOG0306|consen  537 LDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AH-DDSVMSVQFLPKTHLFFTCGKDG  614 (888)
T ss_pred             ecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cc-cCceeEEEEcccceeEEEecCcc
Confidence            99999888999999999999999999999999999999999999999988874 67 68999999999999999999999


Q ss_pred             cEEEEEecCCCCCCCCccccccccccccCC
Q 019482          311 GAMITKLTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       311 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                      .|+-||-+   .+..+.....|...|.++|
T Consensus       615 kvKqWDg~---kFe~iq~L~~H~~ev~cLa  641 (888)
T KOG0306|consen  615 KVKQWDGE---KFEEIQKLDGHHSEVWCLA  641 (888)
T ss_pred             eEEeechh---hhhhheeeccchheeeeeE
Confidence            99999874   4446777778887777654

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-35  Score=235.71  Aligned_cols=284  Identities=17%  Similarity=0.194  Sum_probs=228.0

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      +...+|.+++|+|..+. .++++++        -.+.||...        .......+....+.|+++.|-.||++||+|
T Consensus        24 ke~~~vssl~fsp~~P~-d~aVt~S--------~rvqly~~~--------~~~~~k~~srFk~~v~s~~fR~DG~LlaaG   86 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPY-DFAVTSS--------VRVQLYSSV--------TRSVRKTFSRFKDVVYSVDFRSDGRLLAAG   86 (487)
T ss_pred             cccCcceeEecCCCCCC-ceEEecc--------cEEEEEecc--------hhhhhhhHHhhccceeEEEeecCCeEEEcc
Confidence            34678999999996554 3444333        237777654        222223344456789999999999999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      ...|.|+|+|..+......+.       .|..++..+.|+|+ +..|++|+.|+.+++||+.+......+.+|.+.|.+.
T Consensus        87 D~sG~V~vfD~k~r~iLR~~~-------ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   87 DESGHVKVFDMKSRVILRQLY-------AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             CCcCcEEEeccccHHHHHHHh-------hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            999999999965533333332       38899999999994 5678889999999999999988766888999999999


Q ss_pred             EecC-CCCeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EE
Q 019482          161 DFSL-DSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KI  237 (340)
Q Consensus       161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~  237 (340)
                      +|+| ++.++++|+.||.|++||.+.. ..+.++  .|..+|..+.+-|.|..      ++......+++||+-+|. .+
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~------iasAgGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSL------IASAGGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCE------EEEcCCCeEEEEEecCCceeh
Confidence            9999 5668999999999999999987 555555  47778999999999984      445557789999999655 45


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      ..+..|...|+|+.+..++..|++|+-|+.+++||+.+.+.+.....   .++|.+++.+|+++.++.|..||.+.+-+.
T Consensus       232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             hhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehh
Confidence            55555999999999999999999999999999999988888877643   469999999999999999999999988855


Q ss_pred             cCC
Q 019482          318 TVP  320 (340)
Q Consensus       318 ~~~  320 (340)
                      ...
T Consensus       309 ~~k  311 (487)
T KOG0310|consen  309 EVK  311 (487)
T ss_pred             hcc
Confidence            433

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-35  Score=216.95  Aligned_cols=295  Identities=13%  Similarity=0.132  Sum_probs=231.2

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEEe
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~   82 (340)
                      +..=+++.|+|-.+....+|.+...+. ...+++.|.+.+ ...     ...+..--.-.+.+..++|++.. +.+++++
T Consensus         8 gf~GysvqfSPf~~nrLavAt~q~yGl-~G~G~L~ile~~-~~~-----gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~   80 (311)
T KOG0277|consen    8 GFHGYSVQFSPFVENRLAVATAQHYGL-AGNGRLFILEVT-DPK-----GIQECQSYDTEDGLFDVAWSENHENQVIAAS   80 (311)
T ss_pred             CcccceeEecccccchhheeehhhccc-ccCceEEEEecC-CCC-----CeEEEEeeecccceeEeeecCCCcceEEEEe
Confidence            344578999996666666666666553 245667777765 111     12222222346779999999854 5788999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      .||++++||+...........      +|..+|.++.|++ +++.+++++-|++|++|+....+.+.++.+|..-|....
T Consensus        81 GDGSLrl~d~~~~s~Pi~~~k------EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen   81 GDGSLRLFDLTMPSKPIHKFK------EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             cCceEEEeccCCCCcchhHHH------hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEe
Confidence            999999999654433222211      3889999999999 566788889999999999999999999999999999999


Q ss_pred             ecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEee
Q 019482          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH  239 (340)
Q Consensus       162 ~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~  239 (340)
                      |+| ..+.++++|.|+++++||++.......+.. |...+.++.|+.-...+    +++++.|+.|+.||+++.+ ++.+
T Consensus       155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h~~Eil~cdw~ky~~~v----l~Tg~vd~~vr~wDir~~r~pl~e  229 (311)
T KOG0277|consen  155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-HNSEILCCDWSKYNHNV----LATGGVDNLVRGWDIRNLRTPLFE  229 (311)
T ss_pred             cCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-ccceeEeecccccCCcE----EEecCCCceEEEEehhhcccccee
Confidence            999 788999999999999999987544444554 44679999999877764    7999999999999999765 6778


Q ss_pred             eeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEecCCcEEEEEe
Q 019482          240 KRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw~~  317 (340)
                      +.+|+-.|+.++|||. ...|++++.|-+++|||...+.-.......| ..-+..+.|++ +..++|+++.|+.++||+-
T Consensus       230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH-TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc-ceEEeccccccccCceeeecccccceeeecc
Confidence            8899999999999995 5789999999999999998665544443344 67899999998 5679999999999999973

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.6e-35  Score=255.85  Aligned_cols=308  Identities=15%  Similarity=0.137  Sum_probs=245.0

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCccc----CCeeeEEEecCCCCeeEEEEcCCCCeEE
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT----SPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~l~   79 (340)
                      +.+|++++-+|   ++..+|+||    -+.|+.+.||+.++-......    -+....+...|.+.|+|+.|+|||++||
T Consensus        13 ~~~IfSIdv~p---dg~~~aTgG----q~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA   85 (942)
T KOG0973|consen   13 EKSIFSIDVHP---DGVKFATGG----QVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA   85 (942)
T ss_pred             CeeEEEEEecC---CceeEecCC----ccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence            46699999999   556677777    335666789998754422211    2445567788999999999999999999


Q ss_pred             EEecCCCEEEEEecCc----ee-------eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482           80 CSTTNGGCKLFEVYGG----AT-------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~----~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  148 (340)
                      +|++|+.|.||.....    ..       ..+-.........|.+.|..++|+|++.+|++++.|++|.+||..+.+.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            9999999999998731    00       000000001112388999999999999999999999999999999999999


Q ss_pred             ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC-----CceeeEEEccCCCcceEEEEEecCCc
Q 019482          149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      .+.+|+..|..+.|.|-|++|++-+.|++|++|++.+-...+.+..+.+     ..+..+.|||||+++... .+..+.-
T Consensus       166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~-nA~n~~~  244 (942)
T KOG0973|consen  166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP-NAVNGGK  244 (942)
T ss_pred             eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch-hhccCCc
Confidence            9999999999999999999999999999999999877666665543332     357889999999973221 1233455


Q ss_pred             ceEEEEECCCCcEEeeeeccCCCeeEEEECCC-----CC------------EEEEeeCCCcEEEEeccCceEeecccccc
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GK------------YLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  286 (340)
                      ..+.|.+-.+++.-..+.+|..++.++.|+|.     .+            .+|+|+.|++|.||.....+++.......
T Consensus       245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf  324 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF  324 (942)
T ss_pred             ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence            68999999999988899999999999999982     12            67889999999999998888776665444


Q ss_pred             cccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                       ...|..++|+|||..|+.+|.||+|.+..++..
T Consensus       325 -~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  325 -NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             -cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence             579999999999999999999999999999754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.3e-35  Score=242.88  Aligned_cols=249  Identities=12%  Similarity=0.147  Sum_probs=223.0

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  138 (340)
                      +..|...|.++.|+|....++++-.+|.|.|||.++......+..       ..-||++..|-+..+++++|+.|..|++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-------~~~PvRa~kfiaRknWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-------SEVPVRAAKFIARKNWIVTGSDDMQIRV   81 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-------cccchhhheeeeccceEEEecCCceEEE
Confidence            445889999999999999999999999999999999887766644       3468999999999999999999999999


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      |+..+++.+..+..|.+-|.+++.+|...+++++|.|-+|++||-+.+-...+...+|...|.+++|.|....-    ++
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~nt----Fa  157 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNT----FA  157 (794)
T ss_pred             EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccc----ee
Confidence            99999999999999999999999999999999999999999999987644444444566789999999976653    68


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC--CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                      +++-|++|++|.+.+..+..++.+|...|+++.+-+.  ..+|++|++|..++|||.++..+++.+ .+| ...|..+.|
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL-eGH-t~Nvs~v~f  235 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL-EGH-TNNVSFVFF  235 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh-hcc-cccceEEEe
Confidence            8999999999999999999999999999999999874  479999999999999999999999888 477 578999999


Q ss_pred             ecCCeEEEEEecCCcEEEEEecCC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      +|.-..+++||.||+++||+-..-
T Consensus       236 hp~lpiiisgsEDGTvriWhs~Ty  259 (794)
T KOG0276|consen  236 HPELPIIISGSEDGTVRIWNSKTY  259 (794)
T ss_pred             cCCCcEEEEecCCccEEEecCcce
Confidence            999999999999999999987543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.4e-36  Score=228.02  Aligned_cols=291  Identities=13%  Similarity=0.175  Sum_probs=243.4

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      +..+-|..|+|   +++++++|+      .|+-|++|++....-.-.......-.+--|..+|.|+.|+.|...+|+|+.
T Consensus       213 KSh~EcA~FSP---DgqyLvsgS------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq  283 (508)
T KOG0275|consen  213 KSHVECARFSP---DGQYLVSGS------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ  283 (508)
T ss_pred             ccchhheeeCC---CCceEeecc------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence            35577999999   677888777      677799999973321111112222334558899999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      ||.|++|.+.++.+..++..      .|...|+|+.|+.|+..+++++.|.++++--+.+|+++..+.+|..-|+...|.
T Consensus       284 DGkIKvWri~tG~ClRrFdr------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft  357 (508)
T KOG0275|consen  284 DGKIKVWRIETGQCLRRFDR------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT  357 (508)
T ss_pred             CCcEEEEEEecchHHHHhhh------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence            99999999999998877753      378899999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecC-CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      +||..+++++.||+|++|+.++.+++.+++.. .+.+|.++-.-|.+...    ++.+...+++.+.++. |+.++.+..
T Consensus       358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh----~iVCNrsntv~imn~q-GQvVrsfsS  432 (508)
T KOG0275|consen  358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH----FIVCNRSNTVYIMNMQ-GQVVRSFSS  432 (508)
T ss_pred             CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce----EEEEcCCCeEEEEecc-ceEEeeecc
Confidence            99999999999999999999999999988743 34578888888876654    5667788889999886 555555543


Q ss_pred             c---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          243 L---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       243 ~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      .   .+...+..+||.|.++++.++|+.++.|...+|+..+.+. .| ...+..++-+|-.+.||+-+.||.+++|.
T Consensus       433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-Vh-EkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-VH-EKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-cc-cccccccccCcccchhhhhcccchhhhcC
Confidence            2   3556677899999999999999999999999999888774 56 46788999999999999999999999995

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.7e-35  Score=248.01  Aligned_cols=258  Identities=17%  Similarity=0.179  Sum_probs=208.4

Q ss_pred             eeEEEe-cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee---------------------------e--------
Q 019482           55 VTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT---------------------------D--------   98 (340)
Q Consensus        55 ~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~---------------------------~--------   98 (340)
                      ....+. .|.+.|.++.|++||+|||+|+.|+.|+||.+...+.                           .        
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            344566 8999999999999999999999999999999876100                           0        


Q ss_pred             ---------eeecc--------cc-CCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           99 ---------INLLA--------KK-MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        99 ---------~~~~~--------~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                               .....        .+ .....|.+.|.++.||.++ +|++++.|.+|++|++...+++..+ .|.+-|+|+
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcV  415 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCV  415 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEE-ecCCeeEEE
Confidence                     00000        00 0112478899999999765 8999999999999999988887655 788999999


Q ss_pred             EecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      +|+| |.++|++|+-|+.|+||++...+.+.-...  ...|++++|.|||+.     .+.|+.+|.+++|++...+....
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl--~~lITAvcy~PdGk~-----avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL--RDLITAVCYSPDGKG-----AVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeEeehhh--hhhheeEEeccCCce-----EEEEEeccEEEEEEccCCeEEEe
Confidence            9999 899999999999999999987776554432  357999999999998     88999999999999998776544


Q ss_pred             eecc--------CCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          240 KRLL--------RKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       240 ~~~~--------~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      ...+        ...|+.+.|.|. ...+++.+.|..|+|||.++.+++..++..+....-....|+.||++|+++++|.
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence            3221        236999999984 4468888899999999999988888887555455667889999999999999999


Q ss_pred             cEEEEEecCCC
Q 019482          311 GAMITKLTVPA  321 (340)
Q Consensus       311 ~i~iw~~~~~~  321 (340)
                      .|+||+++.+.
T Consensus       569 ~VYiW~~~~~~  579 (712)
T KOG0283|consen  569 WVYIWKNDSFN  579 (712)
T ss_pred             eEEEEeCCCCc
Confidence            99999986544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=4.8e-35  Score=222.02  Aligned_cols=297  Identities=13%  Similarity=0.240  Sum_probs=243.9

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCC-----CCCc-----ccCCeeeEEEecCCCCeeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPK-----TTSV-----YTSPLVTYVFDESEGDPMTIAV   71 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~-----~~~~-----~~~~~~~~~~~~h~~~v~~~~~   71 (340)
                      +++.|+.|.+|++   ++.|+|.|+      .|..|+|++.+..     ....     ........+|-.|.++|+++.|
T Consensus       110 ~HK~~cR~aafs~---DG~lvATGs------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F  180 (430)
T KOG0640|consen  110 SHKSPCRAAAFSP---DGSLVATGS------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF  180 (430)
T ss_pred             ecccceeeeeeCC---CCcEEEccC------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence            4678999999999   678999887      5556999988721     1111     1112345678889999999999


Q ss_pred             cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc-
Q 019482           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-  150 (340)
Q Consensus        72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-  150 (340)
                      +|....|++++.|++|+++|+........+     ..++...+|.++.|+|.|.+|++|....++++||+++-++...- 
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~-----K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAF-----KVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHH-----HHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence            999999999999999999999765432222     22346679999999999999999999999999999998765443 


Q ss_pred             --ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC-CCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          151 --PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       151 --~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                        .+|.+.|+++.+++.+++.++++.||.|++||--+++++.++...| ...|.+..|..++++     +++++.|..++
T Consensus       256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-----iLsSG~DS~vk  330 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-----ILSSGKDSTVK  330 (430)
T ss_pred             cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-----EeecCCcceee
Confidence              3456689999999999999999999999999999999998887555 457999999999998     89999999999


Q ss_pred             EEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482          228 VYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      +|.+.+++++..+.+..     .--+...|+....|++.-.+ .+.+.-||.++......+..+| .+.++.+.-||.+.
T Consensus       331 LWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH-n~a~R~i~HSP~~p  409 (430)
T KOG0640|consen  331 LWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH-NGAVRWIVHSPVEP  409 (430)
T ss_pred             eeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCC-CCCceEEEeCCCCC
Confidence            99999999998887653     12244567777778777654 5789999999998888887788 68999999999999


Q ss_pred             EEEEEecCCcEEEEEec
Q 019482          302 VVLTASKEWGAMITKLT  318 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~~~  318 (340)
                      -+++|+.|-.+++|.-.
T Consensus       410 ~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  410 AFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ceeeecccceeeeeeec
Confidence            99999999999999653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.4e-36  Score=233.69  Aligned_cols=250  Identities=14%  Similarity=0.181  Sum_probs=210.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      .+.|+|+.+  |...+++|..|.+|+|||..+..+...+.+       |.+.|.|+.|.  .+.|++|+.|.+|++||++
T Consensus       197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~G-------HtGSVLCLqyd--~rviisGSSDsTvrvWDv~  265 (499)
T KOG0281|consen  197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTG-------HTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN  265 (499)
T ss_pred             CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhc-------CCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence            456999999  566899999999999999988877666554       88999999994  5699999999999999999


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE--EEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      +++++..+..|.+.|..+.|+  +.++++++.|.++.+||+.....+  .....+|...|+.+.|+..  +     ++++
T Consensus       266 tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--y-----IVsA  336 (499)
T KOG0281|consen  266 TGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--Y-----IVSA  336 (499)
T ss_pred             CCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--e-----EEEe
Confidence            999999999999999999998  679999999999999999865432  1122355678999999654  5     7999


Q ss_pred             CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      +.|.+|++|++.+++.+..+.+|...|.|+.+  .++++++|+.|.+|++||+..|.+++.+ .+| +.-|.++.|.  .
T Consensus       337 SgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL-eGH-EeLvRciRFd--~  410 (499)
T KOG0281|consen  337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL-EGH-EELVRCIRFD--N  410 (499)
T ss_pred             cCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH-hch-HHhhhheeec--C
Confidence            99999999999999999999999999988876  6899999999999999999999999887 477 5789999995  5


Q ss_pred             eEEEEEecCCcEEEEEecCCCCCC------CCcccccccccccc
Q 019482          301 RVVLTASKEWGAMITKLTVPADWK------GLSLPLLHSHSQNS  338 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~~~------~~~~~~~h~~~v~~  338 (340)
                      +.+++|+.||+|+||++...-++.      .+.....|++.|..
T Consensus       411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr  454 (499)
T KOG0281|consen  411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR  454 (499)
T ss_pred             ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence            789999999999999998654431      22334556666543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.7e-36  Score=242.19  Aligned_cols=267  Identities=16%  Similarity=0.157  Sum_probs=220.6

Q ss_pred             CeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482           53 PLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (340)
                      ....+.+.||+..|.++.|.| .+.+|++++.|+.|+||++.. +.+...+..       |..+|.+++|+++|..|+++
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-------H~k~Vrd~~~s~~g~~fLS~  276 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-------HRKPVRDASFNNCGTSFLSA  276 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-------chhhhhhhhccccCCeeeee
Confidence            345678999999999999999 889999999999999999987 555555543       88999999999999999999


Q ss_pred             cCCCcEEEEeCCCCceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      +.|+.|++||+++|++...+.. ...++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+.. +-+.|..+.|-++|
T Consensus       277 sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  277 SFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-HLGAILDITFVDEG  354 (503)
T ss_pred             ecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-hhhheeeeEEccCC
Confidence            9999999999999999887743 4578999999987 7899999999999999999998888764 45689999999999


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee--cccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRLH  286 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~  286 (340)
                      ++     ++++++|+.+++|+.+.+-+++... .......++..+|++++++.-+.|+.|.+|.+...-...  ....+|
T Consensus       355 ~r-----FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh  429 (503)
T KOG0282|consen  355 RR-----FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGH  429 (503)
T ss_pred             ce-----EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcce
Confidence            98     7999999999999999887664433 233567889999999999999999999999875432221  122333


Q ss_pred             c-ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccccccc
Q 019482          287 L-GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQ  336 (340)
Q Consensus       287 ~-~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v  336 (340)
                      . .+.-..+.|||||++|++|+.||.+.+|+++.-+.   +.....|...+
T Consensus       430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl---~~~lkah~~~c  477 (503)
T KOG0282|consen  430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL---VSKLKAHDQPC  477 (503)
T ss_pred             eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh---hhccccCCcce
Confidence            2 24567899999999999999999999999976553   44455554333

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-34  Score=209.63  Aligned_cols=277  Identities=16%  Similarity=0.183  Sum_probs=232.9

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ++++|.++.|+-+   +++.+..+      ++.++++|+.-        ...+..++.+|..+|..++.+.|...|++++
T Consensus        16 ~qgaV~avryN~d---GnY~ltcG------sdrtvrLWNp~--------rg~liktYsghG~EVlD~~~s~Dnskf~s~G   78 (307)
T KOG0316|consen   16 AQGAVRAVRYNVD---GNYCLTCG------SDRTVRLWNPL--------RGALIKTYSGHGHEVLDAALSSDNSKFASCG   78 (307)
T ss_pred             cccceEEEEEccC---CCEEEEcC------CCceEEeeccc--------ccceeeeecCCCceeeeccccccccccccCC
Confidence            4689999999994   44555444      67779999865        5667788999999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC--ceeeccccCccceeEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--RIILDEPKAHKSVLDM  160 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--~~~~~~~~~~~~i~~~  160 (340)
                      .|..+.+||+.+++...++..       |.+.|+.++|+.+...+++|+.|..+++||.++.  ++++.+....+.|.++
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rg-------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si  151 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRG-------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI  151 (307)
T ss_pred             CCceEEEEEcccCeeeeeccc-------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence            999999999999999888765       8899999999999999999999999999998754  5677777777899999


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      ..+  +..|++|+.||+++.||++.|+......   ..+|+++.|+++++.     .+.++.|+++++.|-.+|+.+..+
T Consensus       152 ~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc-----~La~~l~stlrLlDk~tGklL~sY  221 (307)
T KOG0316|consen  152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNC-----SLASSLDSTLRLLDKETGKLLKSY  221 (307)
T ss_pred             Eec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCE-----EEEeeccceeeecccchhHHHHHh
Confidence            887  6789999999999999999998766554   457999999999996     788899999999999999999999


Q ss_pred             eccCCCee--EEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc-eeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          241 RLLRKPAS--VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS-IALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       241 ~~~~~~i~--~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ++|...-.  ..+++.....+++|++||.+++||+.....+..+.. + ... +.+++++|....++++... .+..|.
T Consensus       222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~-~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~  297 (307)
T KOG0316|consen  222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-V-STVIVTDLSCHPTMDDFITATGH-GDLFWY  297 (307)
T ss_pred             cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-C-CceeEEeeecccCccceeEecCC-ceecee
Confidence            99875433  345666778999999999999999999888877643 3 344 8999999988777777544 445554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.1e-34  Score=262.34  Aligned_cols=252  Identities=18%  Similarity=0.217  Sum_probs=206.3

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLR  137 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  137 (340)
                      +..|.+.|.+++|+|+|++||+|+.|+.|+||+...................+...+.+++|++ ++.+|++++.||+|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            4458999999999999999999999999999997542110000000001112456789999988 578999999999999


Q ss_pred             EEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-CCCcceEE
Q 019482          138 IMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-DGTKPFLF  215 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~  215 (340)
                      +||+.+++.+..+..|...|.+++|+| ++.+|++|+.|++|++||+++++.+..+..+  ..+.++.|++ ++..    
T Consensus       559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g~~----  632 (793)
T PLN00181        559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESGRS----  632 (793)
T ss_pred             EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCCCE----
Confidence            999999988888888889999999997 7889999999999999999999888887632  4689999964 5665    


Q ss_pred             EEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc------eEeecccccccc
Q 019482          216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM------EINHWSKRLHLG  288 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~  288 (340)
                       +++++.|+.|++||+++.+ .+..+..|...|.++.|. ++.+|++++.|+.|++||+...      .++..+ .+| .
T Consensus       633 -latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh-~  708 (793)
T PLN00181        633 -LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGH-T  708 (793)
T ss_pred             -EEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCC-C
Confidence             7889999999999998865 456678899999999997 6889999999999999999753      334433 355 5


Q ss_pred             cceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       289 ~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ..+..++|+|++++|++|+.|+.+++|+...+
T Consensus       709 ~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        709 NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            68899999999999999999999999997644

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-34  Score=226.35  Aligned_cols=271  Identities=17%  Similarity=0.141  Sum_probs=221.2

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      ....+..|.++|.-+.||++|++||+++.|.+..+|.+.......-.    .....|..+|.-+.||||.++|++++.|.
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~----~tlvgh~~~V~yi~wSPDdryLlaCg~~e  291 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK----KTLVGHSQPVSYIMWSPDDRYLLACGFDE  291 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee----eeeecccCceEEEEECCCCCeEEecCchH
Confidence            34567889999999999999999999999999999998765442111    11235889999999999999999999999


Q ss_pred             cEEEEeCCCCceeeccccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          135 HLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      .+.+||+.+|.....+.... ..+.+++|.|||..+++|+.|+++..||++ |..+..+.+.....|.+++.++||++  
T Consensus       292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~--  368 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKY--  368 (519)
T ss_pred             heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcE--
Confidence            99999999999887665543 478999999999999999999999999986 55566666555567999999999998  


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc-cccee
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-GTSIA  292 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~i~  292 (340)
                         ++..+.|..|++|+..+..... +.....+|++++.|.|++++++--.+..+++||++....++.+. +|. +.-+.
T Consensus       369 ---vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiI  443 (519)
T KOG0293|consen  369 ---VLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFII  443 (519)
T ss_pred             ---EEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEE
Confidence               5666689999999988755433 33445689999999999999999999999999999777776663 443 23445


Q ss_pred             eEEEec-CCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482          293 LVEFCP-TQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       293 ~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                      .-+|-- +..++++||+|+.|+||+....+   ++....+|...||.||
T Consensus       444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNcVs  489 (519)
T KOG0293|consen  444 RSCFGGGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNCVS  489 (519)
T ss_pred             EeccCCCCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeEEe
Confidence            555654 55899999999999999986444   6888899999998875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-33  Score=230.34  Aligned_cols=264  Identities=14%  Similarity=0.140  Sum_probs=218.8

Q ss_pred             ceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCe
Q 019482           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ  115 (340)
Q Consensus        36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v  115 (340)
                      .+.+|+...        ........-+.+.|+++.|+++|.+|++|..+|.|.|||....+....+..      .|...|
T Consensus       198 ~vylW~~~s--------~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~------~h~~rv  263 (484)
T KOG0305|consen  198 SVYLWSASS--------GSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG------SHASRV  263 (484)
T ss_pred             eEEEEecCC--------CceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC------CcCcee
Confidence            478887652        222222333478999999999999999999999999999988776555432      277899


Q ss_pred             EEEEEecCCCeEEEccCCCcEEEEeCCCCceeec-cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec
Q 019482          116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR  194 (340)
Q Consensus       116 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~  194 (340)
                      -+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..++|++|++++|+|+.|+.+.|||....+++..+..
T Consensus       264 g~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~  341 (484)
T KOG0305|consen  264 GSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE  341 (484)
T ss_pred             EEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec
Confidence            999998  66899999999999999998876655 666778999999999999999999999999999988888877764


Q ss_pred             CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe--eCCCcEEEEe
Q 019482          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG--SKDGDICVVD  272 (340)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~i~d  272 (340)
                       |.+.|..++|+|-...+  ++...|+.|+.|++||..+++.+..... ...|.++.|++..+.|+++  ..++.|.||+
T Consensus       342 -H~aAVKA~awcP~q~~l--LAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~  417 (484)
T KOG0305|consen  342 -HTAAVKALAWCPWQSGL--LATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWK  417 (484)
T ss_pred             -cceeeeEeeeCCCccCc--eEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEe
Confidence             55789999999987753  2234455799999999999998866554 4589999999999888775  4567899999


Q ss_pred             ccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ..+.+.+..+ .+| ...|..++++|||..+++|+.|.++++|++-...
T Consensus       418 ~ps~~~~~~l-~gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~  464 (484)
T KOG0305|consen  418 YPSMKLVAEL-LGH-TSRVLYLALSPDGETIVTGAADETLRFWNLFDER  464 (484)
T ss_pred             ccccceeeee-cCC-cceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence            9998887766 577 6789999999999999999999999999997643

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.8e-34  Score=210.62  Aligned_cols=250  Identities=12%  Similarity=0.143  Sum_probs=212.2

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCc
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGH  135 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~  135 (340)
                      ..+++|...|.+++|+.+|..|++|+.|+++.+|+++..+.......     ..|.+.|-.++|+| ...++++++.|.+
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~-----~gh~~svdql~w~~~~~d~~atas~dk~   88 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVY-----RGHTDSVDQLCWDPKHPDLFATASGDKT   88 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcc-----cCCCcchhhheeCCCCCcceEEecCCce
Confidence            56788999999999999999999999999999999987754333322     24778899999998 5679999999999


Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      |++||++.+++........+.+ -+.|+|+|++++.++.|..|.+.|.++.+.....+..  ..+..+.|+.++..    
T Consensus        89 ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~nd~----  161 (313)
T KOG1407|consen   89 IRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSNDL----  161 (313)
T ss_pred             EEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCCCE----
Confidence            9999999999988776555555 4889999999999999999999999998887766533  34788999966664    


Q ss_pred             EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  295 (340)
                       ++.....|.|.|......+++..+..|.....++.|+|+|+++|+|+.|-.+.+||+...-+++.+.. + .-+|+.++
T Consensus       162 -Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-l-dwpVRTlS  238 (313)
T KOG1407|consen  162 -FFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-L-DWPVRTLS  238 (313)
T ss_pred             -EEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-c-cCceEEEE
Confidence             34445568999999999999999999999999999999999999999999999999998887777643 3 57999999


Q ss_pred             EecCCeEEEEEecCCcEEEEEecCCC
Q 019482          296 FCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       296 ~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      |+.||++||++|+|..|-|=+++...
T Consensus       239 FS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  239 FSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             eccCcceeeccCccceEEeEecccCC
Confidence            99999999999999888766665544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.4e-32  Score=197.41  Aligned_cols=299  Identities=15%  Similarity=0.184  Sum_probs=232.8

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCC-----Cccc-CCe-eeEEEecCCCCeeEEEEcCC
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTT-----SVYT-SPL-VTYVFDESEGDPMTIAVNPS   74 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~-----~~~~-~~~-~~~~~~~h~~~v~~~~~~~~   74 (340)
                      |....|.+++|.|   .+.+.+.|+...      ++++..+..-..     .... .|. ....-+.|.+.|+|.+|+|+
T Consensus        30 ~dsqairav~fhp---~g~lyavgsnsk------t~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   30 EDSQAIRAVAFHP---AGGLYAVGSNSK------TFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             cchhheeeEEecC---CCceEEeccCCc------eEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            4566789999999   456777777544      477776642111     1111 222 23345678999999999999


Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC----CCeEEEcc-CCCcEEEEeCCCCceeec
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGG-VDGHLRIMHWPSLRIILD  149 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~~~d~~~~~~~~~  149 (340)
                      |++|++|+.|.+|++..++...+.  .........-|.+.|..++|..+    +..|++++ .|..|++-|..+++....
T Consensus       101 geliatgsndk~ik~l~fn~dt~~--~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCN--ATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             cCeEEecCCCceEEEEeccccccc--ccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence            999999999999999887655432  22222223348899999999764    34666654 466788888889999999


Q ss_pred             cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC------CCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      +.+|.+.|.++ ++-++-++++|+.|.+|++||++-..++.++...      ....|.+++..|.|+.     ++++..|
T Consensus       179 ~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-----l~sg~~d  252 (350)
T KOG0641|consen  179 LSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-----LASGHAD  252 (350)
T ss_pred             ecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-----eeeccCC
Confidence            99999888765 3445889999999999999999998888777521      1246899999999997     7889999


Q ss_pred             ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc---eEeecccccccccceeeEEEecCC
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      ....+||++.+++++.+..|...|.++.|+|...|+++++.|..|++-|++..   +........| ...+..+.|+|..
T Consensus       253 ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d  331 (350)
T KOG0641|consen  253 SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQD  331 (350)
T ss_pred             CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEEEecCcc
Confidence            99999999999999999999999999999999999999999999999999752   2222222345 5688899999999


Q ss_pred             eEEEEEecCCcEEEEEec
Q 019482          301 RVVLTASKEWGAMITKLT  318 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~  318 (340)
                      --+++.+.|.++.+|.++
T Consensus       332 ~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  332 FSFISSSADKTATLWALN  349 (350)
T ss_pred             ceeeeccCcceEEEeccC
Confidence            899999999999999874

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=5.8e-33  Score=215.82  Aligned_cols=264  Identities=16%  Similarity=0.131  Sum_probs=219.2

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC---CeEEEEecCCCEEEEEecCceeeeeeccccCCC
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG---DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP  108 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  108 (340)
                      ..|+.+++|+..         .....++.||.++|.+++|.-..   ..|++++.|.++++|..+.++.........   
T Consensus       122 sYDg~~riWd~~---------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~---  189 (423)
T KOG0313|consen  122 SYDGTSRIWDLK---------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVC---  189 (423)
T ss_pred             ecCCeeEEEecC---------CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHh---
Confidence            367779999875         44557789999999999885433   369999999999999998876544333221   


Q ss_pred             CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-------------------------CceeeccccCccceeEEEec
Q 019482          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-------------------------LRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus       109 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------------------------~~~~~~~~~~~~~i~~~~~~  163 (340)
                      ..|...|.++...++|..+++|+.|..|.+|+.++                         +.++..+.+|.++|.++.|+
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~  269 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS  269 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence            15999999999999999999999999999999321                         12344567888899999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc---EEeee
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHK  240 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~  240 (340)
                      + ...+++++.|.+|+.||+.+++.+.++...  ..+.++..+|....     +++++.|..|++||.+++.   ....+
T Consensus       270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~--ksl~~i~~~~~~~L-----l~~gssdr~irl~DPR~~~gs~v~~s~  341 (423)
T KOG0313|consen  270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN--KSLNCISYSPLSKL-----LASGSSDRHIRLWDPRTGDGSVVSQSL  341 (423)
T ss_pred             C-CCceEeecccceEEEEEeecccceeeeecC--cceeEeecccccce-----eeecCCCCceeecCCCCCCCceeEEee
Confidence            8 668999999999999999999999888744  46999999998876     8999999999999999875   45678


Q ss_pred             eccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          241 RLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .+|...|.++.|+|.. ..|++|+.|+++++||+++.+ ++..+ ..| ...|.++.|+. +..|++||.|++++|+.-.
T Consensus       342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h-~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGH-NDKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccC-CceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            8999999999999954 668889999999999999987 66555 466 68999999974 6689999999999998753

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.2e-34  Score=243.00  Aligned_cols=249  Identities=16%  Similarity=0.200  Sum_probs=219.9

Q ss_pred             ecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      +.....|..++|+|....++++-.+|.|++||.+-+..+.++.       +|.++|+.+.|+|++.++++|+.|-.|++|
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-------eHdGpVRgv~FH~~qplFVSGGDDykIkVW   78 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-------EHDGPVRGVDFHPTQPLFVSGGDDYKIKVW   78 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-------ccCCccceeeecCCCCeEEecCCccEEEEE
Confidence            3456779999999999999999999999999999888776664       389999999999999999999999999999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      +..+.+++.++.+|-+-|..+.|++.-.+++++|.|.+|+||+..+++++..+.+ |...|.|.+|+|....     +++
T Consensus        79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG-HnHYVMcAqFhptEDl-----IVS  152 (1202)
T KOG0292|consen   79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG-HNHYVMCAQFHPTEDL-----IVS  152 (1202)
T ss_pred             ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec-CceEEEeeccCCccce-----EEE
Confidence            9999999999999999999999999999999999999999999999999999985 4568999999998776     899


Q ss_pred             cCCcceEEEEECCCCc-----------------------------EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482          220 RGDKALLAVYDISTWN-----------------------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  270 (340)
                      ++-|.+|++||+...+                             ....+.+|+..|+-++|+|.-.+|++|++|..|++
T Consensus       153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl  232 (1202)
T KOG0292|consen  153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL  232 (1202)
T ss_pred             ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence            9999999999975211                             12345778889999999999999999999999999


Q ss_pred             EeccCceE-eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          271 VDVKKMEI-NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       271 ~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      |.+...+. ..-...+| .+.|.++-|+|...++++.|.|+.|+|||+.....
T Consensus       233 WrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  233 WRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             EEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence            99876442 22334577 67999999999999999999999999999987653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-33  Score=207.80  Aligned_cols=282  Identities=15%  Similarity=0.151  Sum_probs=227.1

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      --|++-+.++.   ++.||.+.+      .|....+|.-.        .....-++.||.+.|.+++.+-+.+++++|+.
T Consensus        10 ERplTqiKyN~---eGDLlFsca------KD~~~~vw~s~--------nGerlGty~GHtGavW~~Did~~s~~liTGSA   72 (327)
T KOG0643|consen   10 ERPLTQIKYNR---EGDLLFSCA------KDSTPTVWYSL--------NGERLGTYDGHTGAVWCCDIDWDSKHLITGSA   72 (327)
T ss_pred             ccccceEEecC---CCcEEEEec------CCCCceEEEec--------CCceeeeecCCCceEEEEEecCCcceeeeccc
Confidence            46788899988   455666555      45568899764        33444678999999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcEEEEeCC-------CCceeeccc
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWP-------SLRIILDEP  151 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~-------~~~~~~~~~  151 (340)
                      |.++++||+.++++.....        ...+|..+.|+++|++++....     .+.|.++|++       ..++..++.
T Consensus        73 D~t~kLWDv~tGk~la~~k--------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWK--------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             cceeEEEEcCCCcEEEEee--------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence            9999999999999876664        4478999999999998877653     3679999997       345567777


Q ss_pred             cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  231 (340)
                      .+.+.++.+-|.|-+++|++|..||.|.+||+++++....-...|...|+.++++|+..+     +++++.|.+-++||.
T Consensus       145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-----FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-----FITGSKDTTAKLVDV  219 (327)
T ss_pred             CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-----EEecccCccceeeec
Confidence            777899999999999999999999999999999997766665566678999999999998     899999999999999


Q ss_pred             CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE--EeccCceE------------eecccccccccceeeEEEe
Q 019482          232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV--VDVKKMEI------------NHWSKRLHLGTSIALVEFC  297 (340)
Q Consensus       232 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~~~~~~------------~~~~~~~~~~~~i~~~~~~  297 (340)
                      ++.+.++.+.. ..|+++.+++|...+++.|+.....-+  =+.+.++.            +..+ .+| -+||++++|+
T Consensus       220 ~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv-kGH-FGPINsvAfh  296 (327)
T KOG0643|consen  220 RTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV-KGH-FGPINSVAFH  296 (327)
T ss_pred             cceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc-ccc-ccCcceeEEC
Confidence            99988877765 458999999998777777654322211  11222221            2222 356 4799999999


Q ss_pred             cCCeEEEEEecCCcEEEEEec
Q 019482          298 PTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      |+|+..++|+.||.|++..++
T Consensus       297 PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             CCCcccccCCCCceEEEEEec
Confidence            999999999999999999875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.2e-34  Score=225.96  Aligned_cols=281  Identities=15%  Similarity=0.194  Sum_probs=235.9

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      -++|..+.|-++.+   .++.|+      .|..|.+|+....+..+      ..+|.|..+.|+++.|.++++++++++.
T Consensus       175 ~gev~~v~~l~~sd---tlatgg------~Dr~Ik~W~v~~~k~~~------~~tLaGs~g~it~~d~d~~~~~~iAas~  239 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSD---TLATGG------SDRIIKLWNVLGEKSEL------ISTLAGSLGNITSIDFDSDNKHVIAASN  239 (459)
T ss_pred             ccccceeEEccCcc---hhhhcc------hhhhhhhhhcccchhhh------hhhhhccCCCcceeeecCCCceEEeecC
Confidence            46788889988543   456555      67779999988655222      3457778889999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      |+.+++|++...+....+..       |.+.|+++.|......+++|+.|.+|++||+....+...... ...+.++..+
T Consensus       240 d~~~r~Wnvd~~r~~~TLsG-------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~  311 (459)
T KOG0288|consen  240 DKNLRLWNVDSLRLRHTLSG-------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS  311 (459)
T ss_pred             CCceeeeeccchhhhhhhcc-------cccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec
Confidence            99999999998877666543       889999999998777799999999999999998777765543 3456666666


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (340)
                        ...+++|..|++|++||.+...+......+  +.|+++..++++..     +++++.|..+.+.|+++.+....+...
T Consensus       312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g--g~vtSl~ls~~g~~-----lLsssRDdtl~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLG--GRVTSLDLSMDGLE-----LLSSSRDDTLKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             --ceeeeecccccceEEEeccCCceeeEeecC--cceeeEeeccCCeE-----EeeecCCCceeeeecccccEEEEeecc
Confidence              567899999999999999999998888744  47999999999998     788899999999999998877666544


Q ss_pred             C----CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          244 R----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       244 ~----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      .    ...+.+.|||++.|+++|+.||.|+||++.++++...+...+....|++++|+|.|..|++++.++.+.+|.
T Consensus       383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            3    457889999999999999999999999999999998886666434799999999999999999999999994

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7e-33  Score=232.67  Aligned_cols=280  Identities=15%  Similarity=0.130  Sum_probs=239.0

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      ..|.+++++.+   ..+++       ++..+.+.+|+.+        +..+.+++..  +.+.+..|-|.++++++|..+
T Consensus       374 ~dVRsl~vS~d---~~~~~-------Sga~~SikiWn~~--------t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~  433 (888)
T KOG0306|consen  374 SDVRSLCVSSD---SILLA-------SGAGESIKIWNRD--------TLKCIRTITC--GYILASKFVPGDRYIVLGTKN  433 (888)
T ss_pred             hheeEEEeecC---ceeee-------ecCCCcEEEEEcc--------CcceeEEecc--ccEEEEEecCCCceEEEeccC
Confidence            45778888873   34666       3455669999987        4455555543  478999999999999999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-----Cce--ee-----cccc
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-----LRI--IL-----DEPK  152 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----~~~--~~-----~~~~  152 (340)
                      |.+.+||+.+........       .|.+.+..++.+||++.+++|+.|.+|++||..-     +..  ..     +...
T Consensus       434 Gel~vfdlaS~~l~Eti~-------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe  506 (888)
T KOG0306|consen  434 GELQVFDLASASLVETIR-------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE  506 (888)
T ss_pred             CceEEEEeehhhhhhhhh-------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence            999999999877655443       3889999999999999999999999999999741     111  11     1122


Q ss_pred             CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (340)
Q Consensus       153 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  232 (340)
                      ..+.|.|+.+|||+++|+.+--|.+|++|-+++-+....+.+ |.-+|.|+..+||++.     +++++.|..|++|-++
T Consensus       507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~DSkl-----ivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISPDSKL-----IVTGSADKNVKIWGLD  580 (888)
T ss_pred             ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-cccceeEEeccCCcCe-----EEeccCCCceEEeccc
Confidence            345799999999999999999999999999999988888875 5579999999999997     8999999999999999


Q ss_pred             CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE
Q 019482          233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (340)
Q Consensus       233 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  312 (340)
                      -|.+-+.+..|+..|.++.|-|+...+++++.|+.|+-||-...+.++.+. +| ...|++++.+|+|.+++++|.|..|
T Consensus       581 FGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-~H-~~ev~cLav~~~G~~vvs~shD~sI  658 (888)
T KOG0306|consen  581 FGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-GH-HSEVWCLAVSPNGSFVVSSSHDKSI  658 (888)
T ss_pred             cchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-cc-hheeeeeEEcCCCCeEEeccCCcee
Confidence            999999999999999999999999999999999999999999999988875 56 3689999999999999999999999


Q ss_pred             EEEEecC
Q 019482          313 MITKLTV  319 (340)
Q Consensus       313 ~iw~~~~  319 (340)
                      ++|....
T Consensus       659 RlwE~td  665 (888)
T KOG0306|consen  659 RLWERTD  665 (888)
T ss_pred             EeeeccC
Confidence            9998764

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=1.1e-32  Score=236.25  Aligned_cols=240  Identities=15%  Similarity=0.182  Sum_probs=186.0

Q ss_pred             EEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCc
Q 019482           58 VFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGH  135 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~  135 (340)
                      .+.+|.+.|++++|+| ++++|++++.|++|++||+.+................|...|.+++|+|++ ++|++++.|++
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            4779999999999999 888999999999999999976532111000000112478899999999975 68999999999


Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      |++||+++++....+..|...|.+++|+|++++|++++.|++|++||+++++.+..+..+.......+.|.+++..+ +.
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i-vt  228 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI-IT  228 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE-EE
Confidence            99999999988888888888999999999999999999999999999999998888876554445678899887652 11


Q ss_pred             EEEecCCcceEEEEECCCCc-EEeeeecc-CCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeeccccccccccee
Q 019482          216 CTVQRGDKALLAVYDISTWN-KIGHKRLL-RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~-~~~~~~~~-~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~  292 (340)
                      +....+.|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++||+.+++........+ ..++.
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~  307 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHK  307 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCc
Confidence            11223468999999998765 33322222 23455667899999999887 49999999999988776543333 45788


Q ss_pred             eEEEecC
Q 019482          293 LVEFCPT  299 (340)
Q Consensus       293 ~~~~~~~  299 (340)
                      .++|.|.
T Consensus       308 g~~~~pk  314 (493)
T PTZ00421        308 GLCMMPK  314 (493)
T ss_pred             ceEeccc
Confidence            8888884

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.6e-33  Score=216.68  Aligned_cols=264  Identities=16%  Similarity=0.190  Sum_probs=218.0

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      ....|..|...|.+++.+|+.+++++|+.|..-.+|+..++.....+.       .|...|.++.|+.+|.+||+|..+|
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-------gHKDSVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-------GHKDSVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-------CCCCceEEEEEccCceEEEecCCCc
Confidence            346788999999999999999999999999999999999988655544       3889999999999999999999999


Q ss_pred             cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      .|+||...++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+ +..++++=.|.|+|++   
T Consensus       129 ~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h~~~ct~G~f~pdGKr---  204 (399)
T KOG0296|consen  129 KVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-HNSPCTCGEFIPDGKR---  204 (399)
T ss_pred             cEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-CCCCcccccccCCCce---
Confidence            999999999988877765666888999999999999999999999999998766666765 6678999999999998   


Q ss_pred             EEEEecCCcceEEEEECCCCcEEeeeeccC--------------------------------------------------
Q 019482          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLR--------------------------------------------------  244 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------------------------------------------  244 (340)
                        ++++..|++|++||+.+++++..+....                                                  
T Consensus       205 --~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~  282 (399)
T KOG0296|consen  205 --ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ  282 (399)
T ss_pred             --EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence              8899999999999999988776554110                                                  


Q ss_pred             -CCeeE---EEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          245 -KPASV---LSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       245 -~~i~~---~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                       ..+.+   +.++..=.+.|+|+.||+|.|||+....+....  .| ..+|..+.|-+ ..+|++++.+|.|+.||.+..
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG  358 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTG  358 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cC-CCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence             00111   222223346788999999999999887776654  34 56899999998 789999999999999999766


Q ss_pred             CCCCCCcccccccccccc
Q 019482          321 ADWKGLSLPLLHSHSQNS  338 (340)
Q Consensus       321 ~~~~~~~~~~~h~~~v~~  338 (340)
                      .   ......+|...|..
T Consensus       359 ~---l~~~y~GH~~~Il~  373 (399)
T KOG0296|consen  359 Q---LKFTYTGHQMGILD  373 (399)
T ss_pred             c---eEEEEecCchheeE
Confidence            6   34556667666543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-32  Score=202.70  Aligned_cols=274  Identities=16%  Similarity=0.216  Sum_probs=230.7

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~   81 (340)
                      ...+|.+++|+-+.   .-++.|+      .+.++.+|+++..      .........+|.+.|-.++|+| ..+.++++
T Consensus        19 ~~~~v~Sv~wn~~g---~~lasgs------~dktv~v~n~e~~------r~~~~~~~~gh~~svdql~w~~~~~d~~ata   83 (313)
T KOG1407|consen   19 HVQKVHSVAWNCDG---TKLASGS------FDKTVSVWNLERD------RFRKELVYRGHTDSVDQLCWDPKHPDLFATA   83 (313)
T ss_pred             hhhcceEEEEcccC---ceeeecc------cCCceEEEEecch------hhhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence            35789999999944   4567666      5666999999865      2223345678999999999998 45689999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +.|.+|++||...+++.......        +.-.-+.|+|+|+++++++.|..|...|.++.+..... .....+..+.
T Consensus        84 s~dk~ir~wd~r~~k~~~~i~~~--------~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~  154 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKCTARIETK--------GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEIS  154 (313)
T ss_pred             cCCceEEEEEeccCcEEEEeecc--------CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeee
Confidence            99999999999999887766432        33456899999999999999999999999887766544 3344678889


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      |+-++.+++.....|.|.|.....-+++..+..|. ....|+.|+|+|++     +++|+.|..+.+||+...-+++.+.
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-snCicI~f~p~Gry-----fA~GsADAlvSLWD~~ELiC~R~is  228 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-SNCICIEFDPDGRY-----FATGSADALVSLWDVDELICERCIS  228 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCC-cceEEEEECCCCce-----EeeccccceeeccChhHhhhheeec
Confidence            98777777666667999999999999999998655 56899999999999     8999999999999999988999999


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      .++-+|..++||.||++||+|++|..|-|=++++|..+..+.   ..++...++|+|...+||.+..|
T Consensus       229 RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  229 RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee---ccCCceeEEecCCCceeeEEecC
Confidence            999999999999999999999999999999999999887654   26789999999999999988876

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=9.3e-34  Score=216.58  Aligned_cols=254  Identities=14%  Similarity=0.184  Sum_probs=215.2

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccC-CCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      +..+-+.|..|+|||++|++|+.||-|.+||..+++....+..... ...-+..+|.|+.|+.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            4456689999999999999999999999999999876555533222 223367899999999999999999999999999


Q ss_pred             eCCCCceeeccc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          140 HWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       140 d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      .+++|.++.++. .|...|+++.|+.|+..+++++.|.++++.-+++|++++.+.++. ..|+...|+++|.+     ++
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs-Syvn~a~ft~dG~~-----ii  364 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS-SYVNEATFTDDGHH-----II  364 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc-ccccceEEcCCCCe-----EE
Confidence            999999999887 566799999999999999999999999999999999999998654 67999999999998     89


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccC--CCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeeccccccc-ccceeeE
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-GTSIALV  294 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~i~~~  294 (340)
                      +++.|++|++|+.++.+++..++...  .+|+++-.-| +...++++...++++|.++. |+.++.+..+.. ++...+.
T Consensus       365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~  443 (508)
T KOG0275|consen  365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA  443 (508)
T ss_pred             EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence            99999999999999999988876553  5677877777 45788889999999999985 455555543332 3456677


Q ss_pred             EEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          295 EFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       295 ~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ..+|.|.++.+.+.|+.++.+.+....
T Consensus       444 ~lSpkGewiYcigED~vlYCF~~~sG~  470 (508)
T KOG0275|consen  444 ILSPKGEWIYCIGEDGVLYCFSVLSGK  470 (508)
T ss_pred             EecCCCcEEEEEccCcEEEEEEeecCc
Confidence            899999999999999999999886544

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6.1e-32  Score=231.77  Aligned_cols=254  Identities=14%  Similarity=0.103  Sum_probs=195.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecc--c----cCCCCCCCCCeEEEEEec-CCCeEEEccCCC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--K----KMPPLQDAGPQKCLSFSV-DGSRFAAGGVDG  134 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg  134 (340)
                      |-..|+....++++..+++++.+.....|+...+........  .    ......|.+.|.+++|+| ++++|++|+.|+
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            344566667777877778888887777887655432221110  0    011234889999999999 888999999999


Q ss_pred             cEEEEeCCCCc-------eeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEc
Q 019482          135 HLRIMHWPSLR-------IILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       135 ~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  206 (340)
                      +|++||+.++.       .+..+.+|...|.+++|+|++ ++|++++.|++|+|||+++++.+..+.. +...|.+++|+
T Consensus        99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~s  177 (493)
T PTZ00421         99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWN  177 (493)
T ss_pred             EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEE
Confidence            99999997652       345667788899999999975 6899999999999999999988887764 44679999999


Q ss_pred             cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCC-eeEEEECCCCCEEEEee----CCCcEEEEeccCceEeec
Q 019482          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP-ASVLSISLDGKYLAMGS----KDGDICVVDVKKMEINHW  281 (340)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~~~~~  281 (340)
                      |++..     +++++.|+.|++||+++++.+..+..|.+. ...+.|.+++..+++++    .|+.|++||+++......
T Consensus       178 pdG~l-----Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~  252 (493)
T PTZ00421        178 LDGSL-----LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS  252 (493)
T ss_pred             CCCCE-----EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence            99987     789999999999999999988888888654 45678999887777654    478999999987543322


Q ss_pred             ccccccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482          282 SKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA  321 (340)
Q Consensus       282 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~  321 (340)
                      ....+....+....|++++++|++++ .|+.|++|++....
T Consensus       253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~  293 (493)
T PTZ00421        253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER  293 (493)
T ss_pred             EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence            22223234566678999999999887 49999999997654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.9e-31  Score=199.18  Aligned_cols=283  Identities=13%  Similarity=0.117  Sum_probs=226.6

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      -.++|.++.|+++.   .+++.      +..+..+++|+..        +.....++..++-.|..++|......++.++
T Consensus        13 ~~~~i~sl~fs~~G---~~lit------ss~dDsl~LYd~~--------~g~~~~ti~skkyG~~~~~Fth~~~~~i~sS   75 (311)
T KOG1446|consen   13 TNGKINSLDFSDDG---LLLIT------SSEDDSLRLYDSL--------SGKQVKTINSKKYGVDLACFTHHSNTVIHSS   75 (311)
T ss_pred             CCCceeEEEecCCC---CEEEE------ecCCCeEEEEEcC--------CCceeeEeecccccccEEEEecCCceEEEcc
Confidence            36889999999954   34442      4467789999987        5555566766777889999987777777666


Q ss_pred             c--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           83 T--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        83 ~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      .  |.+|+..++.+++.++.+.+       |...|..++.+|-+..+++++.|++|++||++..++...+.....+  .+
T Consensus        76 tk~d~tIryLsl~dNkylRYF~G-------H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~  146 (311)
T KOG1446|consen   76 TKEDDTIRYLSLHDNKYLRYFPG-------HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IA  146 (311)
T ss_pred             CCCCCceEEEEeecCceEEEcCC-------CCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ce
Confidence            5  78999999999998877754       8899999999998899999999999999999977766555433333  47


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCC--eeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      +|.|+|-++|++.....|++||++.-  .+...+.  .......+.+.|+|||+.     ++.+...+.+++.|.-.|..
T Consensus       147 AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-----iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  147 AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-----ILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             eECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-----EEEEeCCCcEEEEEccCCcE
Confidence            89999999999988779999999863  3333333  223456889999999998     77788899999999999998


Q ss_pred             EeeeeccCCCe---eEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482          237 IGHKRLLRKPA---SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (340)
Q Consensus       237 ~~~~~~~~~~i---~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  313 (340)
                      +..+..+...-   -..+|+||++++++|+.||+|.+|+++++.....+...+ ..++.++.|+|.-.++++++  ..+.
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~-~~~~~~~~fnP~~~mf~sa~--s~l~  298 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN-GGPVSCVRFNPRYAMFVSAS--SNLV  298 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-CCCccccccCCceeeeeecC--ceEE
Confidence            88877665432   567899999999999999999999999999988876555 67999999999877777764  4588


Q ss_pred             EEEecC
Q 019482          314 ITKLTV  319 (340)
Q Consensus       314 iw~~~~  319 (340)
                      +|-...
T Consensus       299 fw~p~~  304 (311)
T KOG1446|consen  299 FWLPDE  304 (311)
T ss_pred             EEeccc
Confidence            886543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.2e-32  Score=204.46  Aligned_cols=269  Identities=17%  Similarity=0.207  Sum_probs=214.1

Q ss_pred             CCCceEEEEeCCCCCCc----ccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCC
Q 019482           33 SPSVLEIFSFDPKTTSV----YTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP  108 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  108 (340)
                      ....|.-+.+++.....    ..+..+.+.+..|.+.|++++.  ++.++|+|+.|-+|+|||+........+.      
T Consensus         9 YE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll------   80 (362)
T KOG0294|consen    9 YEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL------   80 (362)
T ss_pred             eeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee------
Confidence            44446666666555222    1233346678899999999999  59999999999999999998877655554      


Q ss_pred             CCCCCCeEEEEEecCCC--eEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC
Q 019482          109 LQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG  186 (340)
Q Consensus       109 ~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~  186 (340)
                       .|.+.|+++.|.+...  .|++|+.||.|.+|+....+.+..+..|...|+.++++|.+++-++.+.|+.+++||+-+|
T Consensus        81 -~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen   81 -SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             -ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence             3889999999999765  8999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC
Q 019482          187 VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (340)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  266 (340)
                      +.-..+...+.  .+.+.|+|.|.++     +. .....|-+|.+.+.......... ..+.++.|- ++.+|++|.+|+
T Consensus       160 r~a~v~~L~~~--at~v~w~~~Gd~F-----~v-~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~  229 (362)
T KOG0294|consen  160 RVAFVLNLKNK--ATLVSWSPQGDHF-----VV-SGRNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNE  229 (362)
T ss_pred             ccceeeccCCc--ceeeEEcCCCCEE-----EE-EeccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCc
Confidence            87666654443  4569999999972     22 33566889998876654433332 345566553 567999999999


Q ss_pred             cEEEEeccCceEeecccccccccceeeEEE--ecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          267 DICVVDVKKMEINHWSKRLHLGTSIALVEF--CPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      .|++||..+..++..+ .+| ...|.++.+  .|++.+|+++|.||.|+||++++...
T Consensus       230 ~i~~~D~ds~~~~~~~-~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k  285 (362)
T KOG0294|consen  230 WISLKDTDSDTPLTEF-LAH-ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK  285 (362)
T ss_pred             eEEEeccCCCccceee-ecc-hhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence            9999999987777665 577 679999985  46789999999999999999987743

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=3.9e-31  Score=227.90  Aligned_cols=255  Identities=9%  Similarity=0.093  Sum_probs=186.1

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceee-eeeccccCCC
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPP  108 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~  108 (340)
                      ++..+.+.+|+...        ......+.+|.+.|.+++|+|+ +.+|++|+.|+.|+|||+.+.... ..........
T Consensus        50 GG~~gvI~L~~~~r--------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L  121 (568)
T PTZ00420         50 GGLIGAIRLENQMR--------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL  121 (568)
T ss_pred             CCceeEEEeeecCC--------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe
Confidence            44667788887652        2234668899999999999996 789999999999999999764321 1100000011


Q ss_pred             CCCCCCeEEEEEecCCCe-EEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe
Q 019482          109 LQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (340)
Q Consensus       109 ~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  187 (340)
                      ..|...|.+++|+|++.. |++++.|++|++||+++++....+. +...|.+++|+|+|.+|++++.|+.|+|||+++++
T Consensus       122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc
Confidence            247789999999998875 5788999999999999988766553 55689999999999999999999999999999999


Q ss_pred             eEEEeecCCCCc----eeeEEEccCCCcceEEEEEecCCc----ceEEEEECCC-CcEEeeeeccC--CCeeEEEECCCC
Q 019482          188 AWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDIST-WNKIGHKRLLR--KPASVLSISLDG  256 (340)
Q Consensus       188 ~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~-~~~~~~~~~~~--~~i~~~~~s~~~  256 (340)
                      .+..+..+....    +....|++++.+     +++++.+    ++|++||+++ .+++.......  +.+......++|
T Consensus       201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~-----IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        201 IASSFHIHDGGKNTKNIWIDGLGGDDNY-----ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             EEEEEecccCCceeEEEEeeeEcCCCCE-----EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            988887554321    222345678776     5555544    4899999995 45554443322  333333335568


Q ss_pred             CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482          257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       257 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      .++++|+.|+.|++|++..+.... +.......+..+++|.|+.
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~~~~~-l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLGSIRK-VNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CEEEEEECCCeEEEEEccCCcEEe-ecccccCCCccceEEcccc
Confidence            999999999999999998775433 3233335789999999964

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.4e-31  Score=200.18  Aligned_cols=249  Identities=15%  Similarity=0.213  Sum_probs=203.2

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC--CCc
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~  135 (340)
                      .+..-...|+++.|+++|.++++++.|..++|||..++.+...+..       +.-.+..++|....+.++.++.  |.+
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-------kkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-------KKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-------ccccccEEEEecCCceEEEccCCCCCc
Confidence            3444567899999999999999999999999999999988777654       3346778888777666766665  889


Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      |+..++.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..++...+...   .-..++|+|+|-.    
T Consensus        82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~---~~pi~AfDp~GLi----  154 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS---GRPIAAFDPEGLI----  154 (311)
T ss_pred             eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC---CCcceeECCCCcE----
Confidence            999999999999999999999999999998899999999999999999988887766532   2456899999985    


Q ss_pred             EEEecCCcceEEEEECCCCc--EEeeeec---cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccc-
Q 019482          216 CTVQRGDKALLAVYDISTWN--KIGHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT-  289 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-  289 (340)
                       ++.+.....|++||+|.-.  +...+..   .....+.+.|||||++|+.++..+.+++.|.-+|..+..+....... 
T Consensus       155 -fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  155 -FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             -EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence             4555555599999999752  3333333   35678999999999999999999999999999998776653222111 


Q ss_pred             ceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      --.+..|+||++++++|+.||+|.+|+++...
T Consensus       234 ~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~  265 (311)
T KOG1446|consen  234 LPLSATFTPDSKFVLSGSDDGTIHVWNLETGK  265 (311)
T ss_pred             cceeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence            22577899999999999999999999997655

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.5e-33  Score=215.27  Aligned_cols=281  Identities=14%  Similarity=0.159  Sum_probs=227.1

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      .-|.|++=.|.  ....+++|+      .||.++||++.        ...+...++.|.+.|..+++..  ..+++++.|
T Consensus        67 dGV~~lakhp~--~ls~~aSGs------~DG~VkiWnls--------qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdD  128 (433)
T KOG0268|consen   67 DGVSCLAKHPN--KLSTVASGS------CDGEVKIWNLS--------QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDD  128 (433)
T ss_pred             cccchhhcCcc--hhhhhhccc------cCceEEEEehh--------hhhhhheeecccCceeeEEecc--cceEEecCC
Confidence            44777777774  335677666      56669999998        5566678999999999999986  678999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (340)
                      .+|+.|.++.. ....+        .....+..+.-+..+..++++++  .|.|||.....++..+.-..+.|.++.|+|
T Consensus       129 KtvK~wk~~~~-p~~ti--------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNp  197 (433)
T KOG0268|consen  129 KTVKQWKIDGP-PLHTI--------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNP  197 (433)
T ss_pred             cceeeeeccCC-cceee--------eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCC
Confidence            99999998763 22222        23456667777767778888875  599999988888888887788999999999


Q ss_pred             -CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeec
Q 019482          165 -DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRL  242 (340)
Q Consensus       165 -~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~  242 (340)
                       .-..|++|..|++|.+||+++++++..+....  .-+.++|+|..-.     +.++..|..++.||++..+ ++.....
T Consensus       198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--RTN~IswnPeafn-----F~~a~ED~nlY~~DmR~l~~p~~v~~d  270 (433)
T KOG0268|consen  198 VETSILASCASDRSIVLYDLRQASPLKKVILTM--RTNTICWNPEAFN-----FVAANEDHNLYTYDMRNLSRPLNVHKD  270 (433)
T ss_pred             CcchheeeeccCCceEEEecccCCccceeeeec--cccceecCccccc-----eeeccccccceehhhhhhcccchhhcc
Confidence             45578888899999999999999988776433  4688999996554     7889999999999999764 6677888


Q ss_pred             cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      |...+.++.|||.|+.+++|+.|.+|+||..+.+.-...+..-- -..|.++.||.|.+++++||+|+.|++|.-.....
T Consensus       271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence            99999999999999999999999999999998765443332111 35799999999999999999999999999876543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=7.4e-32  Score=217.58  Aligned_cols=295  Identities=17%  Similarity=0.182  Sum_probs=220.0

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      --|.++++.|.   +.-+++|+      .|+.+++|+|......+..   ...........|++++|++.|..|++.+..
T Consensus       168 k~Vsal~~Dp~---GaR~~sGs------~Dy~v~~wDf~gMdas~~~---fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  168 KIVSALAVDPS---GARFVSGS------LDYTVKFWDFQGMDASMRS---FRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             eEEEEeeecCC---Cceeeecc------ccceEEEEecccccccchh---hhccCcccccccceeeecCCCCeEEEEecC
Confidence            34677888884   33455554      7888999999865544322   111122344579999999999999988888


Q ss_pred             CCEEEEEecCceeeeeecc-----ccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeeccccC-----
Q 019482           85 GGCKLFEVYGGATDINLLA-----KKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEPKA-----  153 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-----  153 (340)
                      ...+|+|-+..+.......     .....-.|...++|.+|+|+. ..+++++.||++++||+...+.......+     
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            8999999876654332221     112234588899999999954 57899999999999999865432222111     


Q ss_pred             -ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe--eEEEeecCCCC--ceeeEEEccCCCcceEEEEEecCCcceEEE
Q 019482          154 -HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRNSDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAV  228 (340)
Q Consensus       154 -~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i  228 (340)
                       .-+++.++|+||++.||+|..||+|.+|+.....  +...+...|..  .|+++.||++|++     +++-+.|+++++
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-----LlSRg~D~tLKv  390 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-----LLSRGFDDTLKV  390 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-----hhhccCCCceee
Confidence             1268999999999999999999999999975432  23334444443  7999999999998     899999999999


Q ss_pred             EECCCCc-EEeeeeccC--CCeeEEEECCCCCEEEEeeC------CCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482          229 YDISTWN-KIGHKRLLR--KPASVLSISLDGKYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       229 ~d~~~~~-~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      ||+++.+ ++....+..  .+-+.++|||+.++|++|..      .|.+.+||..+.+.++.+...  ...|..+.|+|.
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~Whpk  468 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHPK  468 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecch
Confidence            9999865 333333322  35577899999999999853      578999999999888776533  468999999999


Q ss_pred             CeEEEEEecCCcEEEEEec
Q 019482          300 QRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~  318 (340)
                      -+.|+.|+.||.++|+--.
T Consensus       469 LNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  469 LNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             hhheeeecCCCceEEEECc
Confidence            9999999999999998543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-32  Score=229.41  Aligned_cols=251  Identities=14%  Similarity=0.176  Sum_probs=202.0

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCC--------------------------------C----
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP--------------------------------K----   45 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~--------------------------------~----   45 (340)
                      ++.+.|.|+.|++   +++++|+||      .|+.|+||.+-.                                .    
T Consensus       265 ah~gaIw~mKFS~---DGKyLAsaG------eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH---DGKYLASAG------EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             ccCCcEEEEEeCC---CCceeeecC------CCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            3578899999999   677899877      566799998864                                0    


Q ss_pred             CCCc----------------ccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCC
Q 019482           46 TTSV----------------YTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (340)
Q Consensus        46 ~~~~----------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  109 (340)
                      ....                .-...+...+.||.+.|..+.|+.+ .+|++++.|.+|++|++...+++..+        
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--------  406 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--------  406 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--------
Confidence            0000                0012344578999999999999965 58999999999999999988876655        


Q ss_pred             CCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482          110 QDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       110 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  188 (340)
                      .|...|+|++|+| |.+||++|+-||.|+||++...+.+. ...-++-|++++|.|||+..+.|+.+|.+++|+.+..+.
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~  485 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL  485 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence            4899999999999 88899999999999999998876654 344557899999999999999999999999999987776


Q ss_pred             EEEeecC-------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC--CeeEEEECCCCCEE
Q 019482          189 WTFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--PASVLSISLDGKYL  259 (340)
Q Consensus       189 ~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l  259 (340)
                      .......       ....|+.++|.|.....    ++..+.|..|+|||.+..+.+..+++...  .-....|+.||++|
T Consensus       486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~----vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I  561 (712)
T KOG0283|consen  486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDE----VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI  561 (712)
T ss_pred             EEeeeEeeccCccccCceeeeeEecCCCCCe----EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence            5544311       12369999999876542    67778899999999988888877776542  33456899999999


Q ss_pred             EEeeCCCcEEEEeccC
Q 019482          260 AMGSKDGDICVVDVKK  275 (340)
Q Consensus       260 ~~~~~dg~i~i~d~~~  275 (340)
                      +++++|..|++|++..
T Consensus       562 Vs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  562 VSASEDSWVYIWKNDS  577 (712)
T ss_pred             EEeecCceEEEEeCCC
Confidence            9999999999999744

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=3.6e-31  Score=227.33  Aligned_cols=260  Identities=16%  Similarity=0.215  Sum_probs=223.7

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEE-EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCC
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYV-FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  110 (340)
                      ..+++|.+|+..        ....... +.||.+.|.++++..-++++++|+.|.++++||..++.+...+..       
T Consensus       225 s~~~tl~~~~~~--------~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-------  289 (537)
T KOG0274|consen  225 SDDSTLHLWDLN--------NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG-------  289 (537)
T ss_pred             CCCceeEEeecc--------cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC-------
Confidence            356668899876        4444444 999999999999987788999999999999999999999887764       


Q ss_pred             CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  190 (340)
                      |.+.|.++...  ..++++|+.|.+|++|+++++..+..+.+|..+|.++..+  +.++++|+.|++|++||+.+++++.
T Consensus       290 h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~  365 (537)
T KOG0274|consen  290 HTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK  365 (537)
T ss_pred             CCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee
Confidence            77888888875  4478889999999999999999998888888999999998  8899999999999999999999999


Q ss_pred             EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      .+.+ |...|+++.+.+. ..     +++++.|+.|++||+++. +++..+..|..-+..+.  ..+++|++++.|+.|+
T Consensus       366 sl~g-H~~~V~sl~~~~~-~~-----~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD~~Ik  436 (537)
T KOG0274|consen  366 SLSG-HTGRVYSLIVDSE-NR-----LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL--LRDNFLVSSSADGTIK  436 (537)
T ss_pred             eecC-CcceEEEEEecCc-ce-----EEeeeeccceEeecCCchhhhhhhhcCCcccccccc--cccceeEeccccccEE
Confidence            9997 5578999988776 43     789999999999999999 89989999988775554  4678999999999999


Q ss_pred             EEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      +||..++++++.+...| ...|..+++.  ...+++++.||.+++|+++....
T Consensus       437 ~WD~~~~~~~~~~~~~~-~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  437 LWDAEEGECLRTLEGRH-VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             EeecccCceeeeeccCC-cccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence            99999999998886434 3578888776  46799999999999999976553

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=2.6e-31  Score=210.10  Aligned_cols=279  Identities=14%  Similarity=0.159  Sum_probs=226.1

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      ++++.-+|.   ...+.+|+      .|..+.+++.+        .......++||...|+.+.|+|+...+++++.|..
T Consensus       222 i~ald~~~s---~~~ilTGG------~d~~av~~d~~--------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~  284 (506)
T KOG0289|consen  222 ITALDIIPS---SSKILTGG------EDKTAVLFDKP--------SNQILATLKGHTKKITSVKFHKDLDTVITASADEI  284 (506)
T ss_pred             eeEEeecCC---CCcceecC------CCCceEEEecc--------hhhhhhhccCcceEEEEEEeccchhheeecCCcce
Confidence            455555553   23345454      55557788776        44555679999999999999999999999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc--cceeEEEecC
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSL  164 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~  164 (340)
                      |+||...........       ..|..+|+.+..+|.|.||++++.|++..+.|++++..+.......  -.+++.+|+|
T Consensus       285 i~vws~~~~s~~~~~-------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  285 IRVWSVPLSSEPTSS-------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             EEeeccccccCcccc-------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence            999998765533222       2488999999999999999999999999999999998876654422  2689999999


Q ss_pred             CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC
Q 019482          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (340)
                      ||.+|.+|..|+.|+|||+.++..+..+.+ |.++|..++|+.+|-+     ++++.+|+.|++||+|..+....+...+
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~Fpg-ht~~vk~i~FsENGY~-----Lat~add~~V~lwDLRKl~n~kt~~l~~  431 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAKFPG-HTGPVKAISFSENGYW-----LATAADDGSVKLWDLRKLKNFKTIQLDE  431 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCccccccCCC-CCCceeEEEeccCceE-----EEEEecCCeEEEEEehhhcccceeeccc
Confidence            999999999999999999999998888876 6689999999999987     8999999999999999887666665443


Q ss_pred             -CCeeEEEECCCCCEEEEeeCCCcEEEEeccCc--eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          245 -KPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       245 -~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                       .++.++.|.+.|.+|+.++.|=+|++++-.+.  ..+..+ ..| .+..+.+.|....++++++|.|..++++.+
T Consensus       432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh-hhc-ccccceeeecccceEEeeccchhheEEeec
Confidence             47999999999999999988766777664443  333333 234 457899999999999999999998888764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=9.2e-31  Score=194.73  Aligned_cols=267  Identities=16%  Similarity=0.205  Sum_probs=220.3

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      ..++||+.+++.+.++.+|++|.+++.|....+|-..+++....+..       |.+.|+|+..+.+.+++++|+.|.++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-------HtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-------HTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-------CCceEEEEEecCCcceeeecccccee
Confidence            34789999999999999999999999999999999888887766654       89999999999999999999999999


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-----CCeEEEEEcc-------CCeeEEEeecCCCCceeeEE
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTE-------DGVAWTFLTRNSDEKIELCR  204 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~iwd~~-------~~~~~~~~~~~~~~~v~~~~  204 (340)
                      ++||+++|+++.... ...+|..+.|+++|++++.+..     .+.|.++|++       ..++...+..+ +..++.+-
T Consensus        77 kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~-~skit~a~  154 (327)
T KOG0643|consen   77 KLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP-DSKITSAL  154 (327)
T ss_pred             EEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-ccceeeee
Confidence            999999999987664 4568999999999998877653     3679999998       34555666543 36799999


Q ss_pred             EccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      |.|-++.     ++++..+|.|..||.++++ .+.....|...|+.+.++||..++++++.|.+-++||..+.++++.+.
T Consensus       155 Wg~l~~~-----ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  155 WGPLGET-----IIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ecccCCE-----EEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            9999997     8999999999999999985 455567888999999999999999999999999999999999988775


Q ss_pred             ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC-CC----------CCCccccccccccccCC
Q 019482          284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA-DW----------KGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~----------~~~~~~~~h~~~v~~vs  340 (340)
                      .   ..|+++.+++|-...++.|+.....-|-...... ++          ..+...++|-+.+|+|+
T Consensus       230 t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvA  294 (327)
T KOG0643|consen  230 T---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVA  294 (327)
T ss_pred             e---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeE
Confidence            3   5699999999988877777654333332222211 11          13455678888888875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-32  Score=200.34  Aligned_cols=242  Identities=18%  Similarity=0.169  Sum_probs=196.8

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEec
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTT   83 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~   83 (340)
                      .-++.++|++..++. +++ ..      .|+.+++|+......       +...++.|..+|.++.|++ .++.+++++.
T Consensus        61 D~LfdV~Wse~~e~~-~~~-a~------GDGSLrl~d~~~~s~-------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSW  125 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQ-VIA-AS------GDGSLRLFDLTMPSK-------PIHKFKEHKREVYSVDWNTVRRRIFLTSSW  125 (311)
T ss_pred             cceeEeeecCCCcce-EEE-Ee------cCceEEEeccCCCCc-------chhHHHhhhhheEEeccccccceeEEeecc
Confidence            457899999976633 333 33      455699999653332       3356889999999999998 4567888899


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      |++|++|+....+....+..       |...|...+|+| .++++++++.|+++++||++.......++.|..+|.++.|
T Consensus       126 D~TiKLW~~~r~~Sv~Tf~g-------h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw  198 (311)
T KOG0277|consen  126 DGTIKLWDPNRPNSVQTFNG-------HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDW  198 (311)
T ss_pred             CCceEeecCCCCcceEeecC-------CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecc
Confidence            99999999988777666543       789999999999 6789999999999999999866555557778789999999


Q ss_pred             cC-CCCeEEEeeCCCeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEee
Q 019482          163 SL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGH  239 (340)
Q Consensus       163 ~~-~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~  239 (340)
                      +. +.+.++||+.|+.|+.||+++-+ ++..+. .|.-.|+.++|||....+    +++++.|-++++||...+. .+..
T Consensus       199 ~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~l----LaSasYDmT~riw~~~~~ds~~e~  273 (311)
T KOG0277|consen  199 SKYNHNVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASL----LASASYDMTVRIWDPERQDSAIET  273 (311)
T ss_pred             cccCCcEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhH----hhhccccceEEecccccchhhhhh
Confidence            98 77789999999999999999754 455554 566789999999987764    7899999999999998554 4455


Q ss_pred             eeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEec
Q 019482          240 KRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~  273 (340)
                      ...|..-+..+.||+ ++.++|+.+-|+.++||+.
T Consensus       274 ~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  274 VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhccceEEeccccccccCceeeecccccceeeecc
Confidence            667777888999998 6789999999999999984

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=3.7e-30  Score=221.84  Aligned_cols=226  Identities=12%  Similarity=0.051  Sum_probs=173.9

Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCc--------eeeccc
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR--------IILDEP  151 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--------~~~~~~  151 (340)
                      |+.++.+++|+.........+.       .|.+.|.+++|+|+ +++|++|+.|++|++||+.++.        ....+.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~-------gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~  122 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLK-------GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK  122 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEc-------CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee
Confidence            5567789999876654333332       38899999999996 7899999999999999997642        223456


Q ss_pred             cCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          152 KAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      +|...|.+++|+|++.. |++++.|++|++||+++++.+..+.  +...|.+++|+|+|..     +++++.|+.|++||
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~l-----Lat~s~D~~IrIwD  195 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNL-----LSGTCVGKHMHIID  195 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCE-----EEEEecCCEEEEEE
Confidence            67789999999998875 5789999999999999998777665  3357999999999996     67788899999999


Q ss_pred             CCCCcEEeeeeccCCCeeE-----EEECCCCCEEEEeeCCC----cEEEEeccC-ceEeecccccccccceeeEEEecCC
Q 019482          231 ISTWNKIGHKRLLRKPASV-----LSISLDGKYLAMGSKDG----DICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       231 ~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      +++++.+..+..|.+.+..     ..|++++.+|++++.|+    .|+|||++. .+++...........+......++|
T Consensus       196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg  275 (568)
T PTZ00420        196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG  275 (568)
T ss_pred             CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence            9999998888888765433     33568999999987764    799999985 4555443221111223333334568


Q ss_pred             eEEEEEecCCcEEEEEecCC
Q 019482          301 RVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~  320 (340)
                      .++++|+.|+.|++|++...
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CEEEEEECCCeEEEEEccCC
Confidence            89999999999999999654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.2e-30  Score=206.42  Aligned_cols=257  Identities=15%  Similarity=0.191  Sum_probs=221.1

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ..+.++...|..+.+++|+.|..+.++|...++....+.+       |...|+.+.|+|+...+++++.|..|++|....
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~  292 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-------HTKKITSVKFHKDLDTVITASADEIIRVWSVPL  292 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC-------cceEEEEEEeccchhheeecCCcceEEeecccc
Confidence            3588888888878999999999999999988876655543       778999999999999999999999999999988


Q ss_pred             CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC-CCCceeeEEEccCCCcceEEEEEecCC
Q 019482          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGD  222 (340)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (340)
                      .........|..+|+.+..+|.|.||++++.|++..+.|++++.++...... .+-.+++.+|+|||..     +.++..
T Consensus       293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi-----fgtgt~  367 (506)
T KOG0289|consen  293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI-----FGTGTP  367 (506)
T ss_pred             ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE-----EeccCC
Confidence            8888888889999999999999999999999999999999999988777642 3345899999999986     788999


Q ss_pred             cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV  302 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  302 (340)
                      |+.+++||+.++..+..+.+|.++|..++|+.+|-+|+++++|+.|++||++..+....+.... ..++.++.|.+.|.+
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTY  446 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCe
Confidence            9999999999999999999999999999999999999999999999999999988776665444 357999999999999


Q ss_pred             EEEEecCCcEEEEEecC-CCCCCCCccccccccc
Q 019482          303 VLTASKEWGAMITKLTV-PADWKGLSLPLLHSHS  335 (340)
Q Consensus       303 l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~h~~~  335 (340)
                      |+.++.|  ++||.+.. .+.|........|.+.
T Consensus       447 L~~~g~~--l~Vy~~~k~~k~W~~~~~~~~~sg~  478 (506)
T KOG0289|consen  447 LGIAGSD--LQVYICKKKTKSWTEIKELADHSGL  478 (506)
T ss_pred             EEeecce--eEEEEEecccccceeeehhhhcccc
Confidence            9999877  66666553 3455555555555533

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=2.7e-31  Score=214.40  Aligned_cols=260  Identities=17%  Similarity=0.238  Sum_probs=196.7

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      ...++..+++|+..|.++++.|.|.+|++|+.|..|++||+..............+  .....|.+++|++.|..|++.+
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEe
Confidence            34567889999999999999999999999999999999999865433222111111  1345789999999999999998


Q ss_pred             CCCcEEEEeCCCCcee------------eccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCee-EEEee----
Q 019482          132 VDGHLRIMHWPSLRII------------LDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVA-WTFLT----  193 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~------------~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~-~~~~~----  193 (340)
                      .....+++|-...+..            ....+|...+++.+|+|+ .+.+++++.||+++|||+.+.+. ...+.    
T Consensus       234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~  313 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA  313 (641)
T ss_pred             cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence            8899999995533322            123456678999999995 45799999999999999976443 22332    


Q ss_pred             cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---EeeeeccCC--CeeEEEECCCCCEEEEeeCCCcE
Q 019482          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRK--PASVLSISLDGKYLAMGSKDGDI  268 (340)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i  268 (340)
                      ....-+++.++|+|+++.     ++++..||.|.+||..+...   ......|..  .|++++||+||++|++-+.|+.+
T Consensus       314 ~g~Rv~~tsC~~nrdg~~-----iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL  388 (641)
T KOG0772|consen  314 GGKRVPVTSCAWNRDGKL-----IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL  388 (641)
T ss_pred             CCcccCceeeecCCCcch-----hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence            223346899999999998     78999999999999865431   233445554  89999999999999999999999


Q ss_pred             EEEeccCceE-eecccccccccceeeEEEecCCeEEEEEec------CCcEEEEEec
Q 019482          269 CVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLT  318 (340)
Q Consensus       269 ~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iw~~~  318 (340)
                      ++||++..+. +..........+-+.++|||+.++|++|..      .|.+.+++-.
T Consensus       389 KvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~  445 (641)
T KOG0772|consen  389 KVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM  445 (641)
T ss_pred             eeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence            9999987553 332222222346788999999999999875      3567777654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.9e-32  Score=214.06  Aligned_cols=251  Identities=19%  Similarity=0.226  Sum_probs=213.6

Q ss_pred             eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      ...+..|.+.+..+.|-++...|++|+.|..|++|++...+.  ...+.       +..++|+.+.|.++++++++++.|
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-------Gs~g~it~~d~d~~~~~~iAas~d  240 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-------GSLGNITSIDFDSDNKHVIAASND  240 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-------ccCCCcceeeecCCCceEEeecCC
Confidence            355778999999999999989999999999999999987662  11221       245789999999999999999999


Q ss_pred             CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      +.+++|++...+....+.+|.+.|+++.|......+++|+.|.++++||+....+..++...  ..+..+..++.  .  
T Consensus       241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~~~--~--  314 (459)
T KOG0288|consen  241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCSIS--D--  314 (459)
T ss_pred             Cceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEecce--e--
Confidence            99999999999999999999999999999887777999999999999999998888877643  34667776622  1  


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc--ccccce
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSI  291 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~i  291 (340)
                         ++++..|+.|++||.++..+......++ .|+++..+++|..+.+.+.|..+.++|+++.+....+...  ......
T Consensus       315 ---~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw  390 (459)
T KOG0288|consen  315 ---VISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW  390 (459)
T ss_pred             ---eeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence               6888899999999999999988877766 8999999999999999999999999999998877655321  112358


Q ss_pred             eeEEEecCCeEEEEEecCCcEEEEEecCCCCC
Q 019482          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (340)
                      +.+.|||++.|+++||.||.|+||++...+..
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE  422 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLE  422 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCceEE
Confidence            89999999999999999999999999877643

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-31  Score=217.09  Aligned_cols=243  Identities=16%  Similarity=0.186  Sum_probs=209.2

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec-CCCCeeEEEEcCCCCeEEEEe
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ...|+++.|++   ++..||+|..      ++.+.||+..        +......+.+ |...|-+++|+  +..+.+|+
T Consensus       217 ~~~vtSv~ws~---~G~~LavG~~------~g~v~iwD~~--------~~k~~~~~~~~h~~rvg~laW~--~~~lssGs  277 (484)
T KOG0305|consen  217 EELVTSVKWSP---DGSHLAVGTS------DGTVQIWDVK--------EQKKTRTLRGSHASRVGSLAWN--SSVLSSGS  277 (484)
T ss_pred             CCceEEEEECC---CCCEEEEeec------CCeEEEEehh--------hccccccccCCcCceeEEEecc--CceEEEec
Confidence            47899999999   5667887774      4559999987        3334445666 99999999997  77899999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .++.|..+|++..+......      ..|...|..++|++|+.++|+|+.|+.+.|||....+....+..|...|..++|
T Consensus       278 r~~~I~~~dvR~~~~~~~~~------~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~aw  351 (484)
T KOG0305|consen  278 RDGKILNHDVRISQHVVSTL------QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAW  351 (484)
T ss_pred             CCCcEEEEEEecchhhhhhh------hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeee
Confidence            99999999998776544421      138899999999999999999999999999999888888899999999999999


Q ss_pred             cC-CCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          163 SL-DSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       163 ~~-~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      +| ....||+|+  .|+.|++||..+++.+..+..  ...|..+.|++..+.+.   ...+..++.|.||+..+.+.+..
T Consensus       352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk~~kEi~---sthG~s~n~i~lw~~ps~~~~~~  426 (484)
T KOG0305|consen  352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSKKYKELL---STHGYSENQITLWKYPSMKLVAE  426 (484)
T ss_pred             CCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcCCCCEEE---EecCCCCCcEEEEeccccceeee
Confidence            99 677888875  799999999999999988864  45799999999997632   34556678999999999999999


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  276 (340)
                      +.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999999999999999999999998664

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.5e-30  Score=202.53  Aligned_cols=257  Identities=17%  Similarity=0.175  Sum_probs=206.5

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC---CeEEEccCCCcEEE
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG---SRFAAGGVDGHLRI  138 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~  138 (340)
                      |.+-|.++...  ++.|++|+.||.+++||..... ...+.       .|.+++.+++|.-..   ..|++++.|.++++
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~~~~-------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L  173 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IKTIV-------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL  173 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEecCCce-EEEEe-------cCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence            77888888876  7899999999999999986543 33333       388999988885533   35999999999999


Q ss_pred             EeCCCCcee----eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC-------------------------CeeE
Q 019482          139 MHWPSLRII----LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-------------------------GVAW  189 (340)
Q Consensus       139 ~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-------------------------~~~~  189 (340)
                      |.++.++..    ..-.+|...|.++...++|..+++|+.|.+|+||+..+                         +.++
T Consensus       174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~  253 (423)
T KOG0313|consen  174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL  253 (423)
T ss_pred             EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce
Confidence            998876532    23347888999999999999999999999999999321                         1233


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      ..+. +|.++|.++.|++.+.      +++++.|.+|+.||+.++..+..+.. ...++++..+|..++|++|+.|..|+
T Consensus       254 vtl~-GHt~~Vs~V~w~d~~v------~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  254 VTLE-GHTEPVSSVVWSDATV------IYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             EEec-ccccceeeEEEcCCCc------eEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCcee
Confidence            3444 5567899999999655      79999999999999999998766665 45799999999999999999999999


Q ss_pred             EEeccCc--eEeecccccccccceeeEEEecCC-eEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          270 VVDVKKM--EINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       270 i~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      +||.+++  ........+| .+.|.++.|+|.. .+|++++.|+++++||++.+..  ++.....|...|.++
T Consensus       326 l~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~v  395 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSV  395 (423)
T ss_pred             ecCCCCCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEE
Confidence            9999874  4555555677 5799999999965 6789999999999999987663  555666676666543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=1.3e-30  Score=207.46  Aligned_cols=256  Identities=16%  Similarity=0.161  Sum_probs=216.1

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccc---------cCCC--CCCCCCeEEEEEecCCC
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---------KMPP--LQDAGPQKCLSFSVDGS  125 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---------~~~~--~~~~~~v~~~~~~~~~~  125 (340)
                      ..+..|.-+|.+++++|++++.++++.+++|.=|++.++.....+...         +...  ..|...+.+++.++||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            456779999999999999999999999999999999887744222111         1111  25778999999999999


Q ss_pred             eEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEE
Q 019482          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (340)
Q Consensus       126 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~  205 (340)
                      ||++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|++|++|+++....+.++.+|+. .|..+.-
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~Ida  294 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDA  294 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeech
Confidence            999999999999999999999999999999999999998888899999999999999999888888887664 6888888


Q ss_pred             ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                      ..-++.     +..++.|+++++|++..-.. ..+.++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++.....+
T Consensus       295 L~reR~-----vtVGgrDrT~rlwKi~eesq-lifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~A  367 (479)
T KOG0299|consen  295 LSRERC-----VTVGGRDRTVRLWKIPEESQ-LIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLA  367 (479)
T ss_pred             hcccce-----EEeccccceeEEEeccccce-eeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecc
Confidence            877774     56677999999999954433 357778888999999654 58899999999999999998888766555


Q ss_pred             ccc----------cceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          286 HLG----------TSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       286 ~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      |.-          ..|++++..|...++++|+.+|.|++|.+...
T Consensus       368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            531          26889999999999999999999999999755

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.98  E-value=8.8e-31  Score=210.95  Aligned_cols=286  Identities=14%  Similarity=0.139  Sum_probs=229.2

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      +.-|.+++.+. +.  +.+.+|+ .+      .|++|++.......   |..........+.|+++...|||+.|++|+.
T Consensus       419 GEvVcAvtIS~-~t--rhVyTgG-kg------cVKVWdis~pg~k~---PvsqLdcl~rdnyiRSckL~pdgrtLivGGe  485 (705)
T KOG0639|consen  419 GEVVCAVTISN-PT--RHVYTGG-KG------CVKVWDISQPGNKS---PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE  485 (705)
T ss_pred             CcEEEEEEecC-Cc--ceeEecC-CC------eEEEeeccCCCCCC---ccccccccCcccceeeeEecCCCceEEeccc
Confidence            34444455554 32  3455444 33      39999998654433   2222222224567999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      -.++.|||+.......+....     .....+++++.+||.+..+++..||.|.|||+.+...+..+.+|.+.+.|+.++
T Consensus       486 astlsiWDLAapTprikaelt-----ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  486 ASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             cceeeeeeccCCCcchhhhcC-----CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence            999999999876543222111     122467889999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (340)
                      +||..|.+|+-|.+||.||++++..+....  ....|.++..+|++.+     ++.+-.++.+.+......+. ..+..|
T Consensus       561 ~dGtklWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dW-----lavGMens~vevlh~skp~k-yqlhlh  632 (705)
T KOG0639|consen  561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDW-----LAVGMENSNVEVLHTSKPEK-YQLHLH  632 (705)
T ss_pred             CCCceeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccc-----eeeecccCcEEEEecCCccc-eeeccc
Confidence            999999999999999999999998876654  4457999999999998     78888888888888765543 567788


Q ss_pred             CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +..|.++.|.+.|+++++.+.|+.+..|...-|..+...+.   .++|.++.+|.|.++|+||+.|....||.+.
T Consensus       633 eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  633 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence            89999999999999999999999999999988876655432   5689999999999999999999999999863

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.5e-30  Score=198.55  Aligned_cols=276  Identities=12%  Similarity=0.169  Sum_probs=224.9

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEec------Cce--------
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY------GGA--------   96 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~------~~~--------   96 (340)
                      ++.|.+..||.++        +..+...+.||.+.|+++.|++.+.++++++.|++-.||...      ...        
T Consensus       166 ASADhTA~iWs~E--------sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE  237 (481)
T KOG0300|consen  166 ASADHTARIWSLE--------SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE  237 (481)
T ss_pred             cccccceeEEeec--------cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence            6688889999998        677778899999999999999999999999999999999821      100        


Q ss_pred             eee-------------------eeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccce
Q 019482           97 TDI-------------------NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (340)
Q Consensus        97 ~~~-------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i  157 (340)
                      ...                   .+...-.....|.+.|.+..|...|+.+++++.|.+..+||+++++.+..+.+|....
T Consensus       238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL  317 (481)
T KOG0300|consen  238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL  317 (481)
T ss_pred             hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence            000                   0000001112367888899999999999999999999999999999999999999999


Q ss_pred             eEEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      +.+.-+|..+++++.+.|.+.++||++..-. +..+. +|...|+++.|..+.+      ++++++|.+|++||+++...
T Consensus       318 tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~dd~------vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  318 THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNTDDR------VVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             cccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEEEEecCCc------eeecCCCceEEEeeeccccC
Confidence            9999999999999999999999999985433 44455 4556899999999988      79999999999999998764


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee---cccccccccceeeEEEecCC--eEEEEEecCCc
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH---WSKRLHLGTSIALVEFCPTQ--RVVLTASKEWG  311 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~  311 (340)
                      .........+++.++.+..+..|+.-..+..|++||+......+   ....+| ...|.+++|..+-  .-|++++.|..
T Consensus       391 plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR~  469 (481)
T KOG0300|consen  391 PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDRM  469 (481)
T ss_pred             cceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc-ceeeeeeeccccCcccccccccccce
Confidence            33333345689999999988899999999999999998765443   334566 5789999998654  45899999999


Q ss_pred             EEEEEecCCCC
Q 019482          312 AMITKLTVPAD  322 (340)
Q Consensus       312 i~iw~~~~~~~  322 (340)
                      +.-|++..|..
T Consensus       470 v~gW~in~p~~  480 (481)
T KOG0300|consen  470 VAGWKINTPTS  480 (481)
T ss_pred             eeeeEecccCC
Confidence            99999988763

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.98  E-value=9.5e-30  Score=202.63  Aligned_cols=291  Identities=14%  Similarity=0.139  Sum_probs=222.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCC--cccC---------CeeeEEEecCCCCeeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS--VYTS---------PLVTYVFDESEGDPMTIAV   71 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~--~~~~---------~~~~~~~~~h~~~v~~~~~   71 (340)
                      +.-+|+|++++|+..   .+..++      .++.|.-|........  ..+.         +..... ++|.+.+.+++.
T Consensus       141 H~~s~~~vals~d~~---~~fsas------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~av  210 (479)
T KOG0299|consen  141 HQLSVTSVALSPDDK---RVFSAS------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAV  210 (479)
T ss_pred             ccCcceEEEeecccc---ceeecC------CCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEE
Confidence            456889999999543   344333      4455777766432211  1111         111111 489999999999


Q ss_pred             cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (340)
Q Consensus        72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  151 (340)
                      ++||+|||+|+.|..|.||+.++.+....+.       .|.+.|.+++|-.....+++++.|..|++|+++....+..+.
T Consensus       211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-------GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             cCCCcEEEecCCCceEEEecCcccchhhccc-------ccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence            9999999999999999999999988766543       388999999999888899999999999999999999999999


Q ss_pred             cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  231 (340)
                      +|++.|..+....-.+.+-+|+.|+++++|++.....  .+...+.+.+.|++|-.+..      +++++++|.|.+|++
T Consensus       284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~In~~H------fvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFINDEH------FVSGSDNGSIALWSL  355 (479)
T ss_pred             CCccceeeechhcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEecccc------eeeccCCceEEEeee
Confidence            9999999999888888788888999999999954333  23334556899999998877      799999999999999


Q ss_pred             CCCcEEeeeecc------------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEec
Q 019482          232 STWNKIGHKRLL------------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       232 ~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      .+.+++......            +..|++++..|...++++|+.+|.|++|-+..+- .+..+......+-|++++|++
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~  435 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSN  435 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEcc
Confidence            998877654321            1278999999999999999999999999998762 222222222356899999999


Q ss_pred             CCeEE-EEEecCCcEEEEEec
Q 019482          299 TQRVV-LTASKEWGAMITKLT  318 (340)
Q Consensus       299 ~~~~l-~~~~~dg~i~iw~~~  318 (340)
                      +|+.+ +..+....+-=|-..
T Consensus       436 sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  436 SGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             CCCEEEEecccccccceeeEe
Confidence            99854 455555555445444

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=4.2e-30  Score=204.40  Aligned_cols=261  Identities=13%  Similarity=0.146  Sum_probs=201.2

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCccc--CCeeeEEEecCCCCeeEEEEcCCCC-eE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGD-DF   78 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~-~l   78 (340)
                      .+.+.|.-+...|...  .++|+++      ..+.+.||++.........  +..+...|.+|++.-++++|++... +|
T Consensus       122 ~h~gEVnRaRymPQnp--~iVAt~t------~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNP--NIVATKT------SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             cCCccchhhhhCCCCC--cEEEecC------CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence            3456777778888644  6677555      4556999999755443332  3455678999999999999999554 88


Q ss_pred             EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCC--CCceeeccccCcc
Q 019482           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHK  155 (340)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~  155 (340)
                      ++++.|++|.+||+................-.|...|..++|++ +..+|++++.|+.+.|||++  +.+.......|..
T Consensus       194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            99999999999999865543222222222235889999999999 56688999999999999999  4555566667788


Q ss_pred             ceeEEEecC-CCCeEEEeeCCCeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       156 ~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      .+.|++|+| ++..||+||.|++|++||+|+.. ++..+. .|+..|..+.|+|....+    +++++.|+.+.+||+..
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etv----LASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETV----LASSGTDRRLNVWDLSR  348 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCce----eEecccCCcEEEEeccc
Confidence            999999999 67789999999999999999854 455555 556789999999998764    78899999999999874


Q ss_pred             Cc--------------EEeeeeccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccC
Q 019482          234 WN--------------KIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       234 ~~--------------~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~  275 (340)
                      -.              .+..-.+|...|..+.|+|+.. .|++.++|+.+.||....
T Consensus       349 ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  349 IGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            22              2344567788899999999765 577789999999998753

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.6e-29  Score=201.45  Aligned_cols=291  Identities=16%  Similarity=0.177  Sum_probs=231.0

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~   81 (340)
                      ..++|+|+.|+|...  .+++       +|.++.++||.++.+.+...      ..+.-...+|.+.+|.|+|. .++++
T Consensus       212 s~~~I~sv~FHp~~p--lllv-------aG~d~~lrifqvDGk~N~~l------qS~~l~~fPi~~a~f~p~G~~~i~~s  276 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAP--LLLV-------AGLDGTLRIFQVDGKVNPKL------QSIHLEKFPIQKAEFAPNGHSVIFTS  276 (514)
T ss_pred             CcCCceEEEecCCCc--eEEE-------ecCCCcEEEEEecCccChhh------eeeeeccCccceeeecCCCceEEEec
Confidence            457899999999544  4444       45777899999997765432      22222457899999999999 88999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +....++.||+.+.+....-...    -.....+.....+|++++|+..+..|.|.+....+++.+..+. -.+.|..++
T Consensus       277 ~rrky~ysyDle~ak~~k~~~~~----g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~  351 (514)
T KOG2055|consen  277 GRRKYLYSYDLETAKVTKLKPPY----GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT  351 (514)
T ss_pred             ccceEEEEeeccccccccccCCC----CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence            99999999999877643221110    0113467778899999999999999999999999988776653 456899999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC------Cc
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST------WN  235 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~------~~  235 (340)
                      |+.+++.|++++.+|.|.+||++...++..+.....-.-++++.++++.+     +++|+..|.|.|||..+      .+
T Consensus       352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y-----lA~GS~~GiVNIYd~~s~~~s~~Pk  426 (514)
T KOG2055|consen  352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY-----LATGSDSGIVNIYDGNSCFASTNPK  426 (514)
T ss_pred             EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCce-----EEeccCcceEEEeccchhhccCCCC
Confidence            99999999999999999999999999999887544434567888899997     89999999999999764      45


Q ss_pred             EEeeeeccCCCeeEEEECCCCCEEEEeeC--CCcEEEEeccCceEeecccccc-cccceeeEEEecCCeEEEEEecCCcE
Q 019482          236 KIGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRLH-LGTSIALVEFCPTQRVVLTASKEWGA  312 (340)
Q Consensus       236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i  312 (340)
                      ++..+......|+++.|+||++.||.++.  +..+++-.+.+......+.... .-..+++++|+|.+.+||.|..+|.+
T Consensus       427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv  506 (514)
T KOG2055|consen  427 PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRV  506 (514)
T ss_pred             chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCce
Confidence            66666666778999999999999998875  5789999988877655443221 12479999999999999999999999


Q ss_pred             EEEEec
Q 019482          313 MITKLT  318 (340)
Q Consensus       313 ~iw~~~  318 (340)
                      .+|.+.
T Consensus       507 ~l~kL~  512 (514)
T KOG2055|consen  507 HLFKLH  512 (514)
T ss_pred             eeEeec
Confidence            999984

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.7e-29  Score=199.81  Aligned_cols=307  Identities=12%  Similarity=0.124  Sum_probs=221.3

Q ss_pred             ceeEEeeeeecCCCc-------cEEEEcCCCCcccCCCceEEEEeCCCCCC-------ccc-----------C-CeeeEE
Q 019482            5 GTVTCGSWIKRPENV-------NLVVLGKSSRASSSPSVLEIFSFDPKTTS-------VYT-----------S-PLVTYV   58 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~-------~~~~~g~~~~~~~~~~~i~i~~~~~~~~~-------~~~-----------~-~~~~~~   58 (340)
                      .|-..+.|.|+....       +.++.|.... ++.++.+.|-++......       +..           . ......
T Consensus        41 WPSLt~qWlPd~~~~~~~~~~~~rliLGthTs-~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~~~~~v~i~~  119 (422)
T KOG0264|consen   41 WPSLTVQWLPDVTKPEEKDFSKQRLILGTHTS-GSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGAVSGKVEISQ  119 (422)
T ss_pred             ccceEEEEcCCcccccCCCceeEEEEEEeecC-CCCccEEEEEeecCCCcccccccccccccccccCCccccccceEEEE
Confidence            466789999963221       3445555422 336777777754311100       000           0 111122


Q ss_pred             EecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeecc---ccCCCCCCCCCeEEEEEecCC-CeEEEccCC
Q 019482           59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLA---KKMPPLQDAGPQKCLSFSVDG-SRFAAGGVD  133 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d  133 (340)
                      .--|.+.|+.+.+.|+.. .+|+.+..+.+.|||............   .......|...-++++|++.. -.|++++.|
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            235899999999999765 556677788999999976543222111   111122366667889999943 388999999


Q ss_pred             CcEEEEeCCCCce-------eeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccC--CeeEEEeecCCCCceeeE
Q 019482          134 GHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELC  203 (340)
Q Consensus       134 g~i~~~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~  203 (340)
                      ++|.+||+.....       ...+.+|...|..++|++ +...|++++.|+.+.|||+|+  .++..... .|.+.+.|+
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~  278 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCV  278 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEE
Confidence            9999999975332       344667778999999999 667899999999999999995  34434443 566789999


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEee-
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINH-  280 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~-  280 (340)
                      +|+|-+..+    +++++.|++|.+||+|+.+ ++..+..|+..|..+.|+|+ ...|++++.|+.+.+||+..-...+ 
T Consensus       279 ~fnp~~~~i----lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~  354 (422)
T KOG0264|consen  279 AFNPFNEFI----LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS  354 (422)
T ss_pred             EeCCCCCce----EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence            999998764    7899999999999999865 67788999999999999996 5788899999999999997522111 


Q ss_pred             ------------cccccccccceeeEEEecCCe-EEEEEecCCcEEEEEec
Q 019482          281 ------------WSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLT  318 (340)
Q Consensus       281 ------------~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~  318 (340)
                                  ..-.+| ...|..+.|+|+.. .|++.+.|+.+.||++.
T Consensus       355 ~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  355 PEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             hhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                        222345 57899999999885 57789999999999986

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.7e-30  Score=204.27  Aligned_cols=241  Identities=15%  Similarity=0.167  Sum_probs=199.1

Q ss_pred             CCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        63 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      .+.|.+++|+|... -+|+++.-+ +.||+..+......+..       ....|+++.|-.||++|++|...|.|++||+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~r-vqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~   97 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSVR-VQLYSSVTRSVRKTFSR-------FKDVVYSVDFRSDGRLLAAGDESGHVKVFDM   97 (487)
T ss_pred             cCcceeEecCCCCCCceEEecccE-EEEEecchhhhhhhHHh-------hccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence            46799999999665 455555544 99999887665444432       4478999999999999999999999999997


Q ss_pred             CCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      .+...+..+..|..++..+.|+| ++..+++|++|+.+++||+.+......+. .|...|.+.+|+|....+    +++|
T Consensus        98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hi----vvtG  172 (487)
T KOG0310|consen   98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHI----VVTG  172 (487)
T ss_pred             ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeE----EEec
Confidence            77667777888989999999999 55678899999999999999888754565 455689999999988764    7999


Q ss_pred             CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      +.|+.|++||++.......-..|+.+|..+.+-|.|..+++++. +.+++||+.+|..+......| ...|+++.+..++
T Consensus       173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~  250 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS  250 (487)
T ss_pred             CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC
Confidence            99999999999987544445568889999999999999999875 579999999655544443446 5799999999999


Q ss_pred             eEEEEEecCCcEEEEEec
Q 019482          301 RVVLTASKEWGAMITKLT  318 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~  318 (340)
                      ..|+++|-|+.+++|++.
T Consensus       251 ~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  251 TRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             ceEeecccccceEEEEcc
Confidence            999999999999999953

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=2.4e-30  Score=196.59  Aligned_cols=274  Identities=12%  Similarity=0.141  Sum_probs=210.0

Q ss_pred             eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce---eeeeecccc--------CCCCCCCCCeEEEEEecCC
Q 019482           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA---TDINLLAKK--------MPPLQDAGPQKCLSFSVDG  124 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~  124 (340)
                      ...+..|+.++.+.+|+|||.++|+|+.|..|+|.|++..-   .........        .....|..+|+++.|+|..
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            45578899999999999999999999999999999987210   111111000        1123478999999999999


Q ss_pred             CeEEEccCCCcEEEEeCCCCce--eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCce
Q 019482          125 SRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKI  200 (340)
Q Consensus       125 ~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v  200 (340)
                      ..|++++.|++|++||+.....  ..+......+|.++.|+|.|.+|+.|..-.++++||+.+-++...-.  ..+.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            9999999999999999875432  22333445689999999999999999999999999999988765443  3456789


Q ss_pred             eeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-cc-CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (340)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  278 (340)
                      +++.+++.++.     -++++.||.|++||--+++++..+. .| +..|.+..|..+|+|+++.+.|..+++|.+.++++
T Consensus       265 ~~V~Ys~t~~l-----YvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~  339 (430)
T KOG0640|consen  265 TQVRYSSTGSL-----YVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM  339 (430)
T ss_pred             eEEEecCCccE-----EEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence            99999999996     6899999999999999988877664 33 35799999999999999999999999999999999


Q ss_pred             eeccccccc---ccceeeEEEecCCeEEEEEec-CCcEEEEEecCCCCCCCCcccccccccc
Q 019482          279 NHWSKRLHL---GTSIALVEFCPTQRVVLTASK-EWGAMITKLTVPADWKGLSLPLLHSHSQ  336 (340)
Q Consensus       279 ~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~h~~~v  336 (340)
                      +..+.....   ...-+...|+....+++.-.+ .+.+.-||-.....  .......|.+.+
T Consensus       340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~  399 (430)
T KOG0640|consen  340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAV  399 (430)
T ss_pred             EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh--hhhcccCCCCCc
Confidence            877643311   123355667777777666543 46677777765442  333455565554

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.9e-29  Score=189.17  Aligned_cols=272  Identities=12%  Similarity=0.114  Sum_probs=210.7

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +...|.+++|+|...  .+++.      ++-|+++++|+++..+...   +   .....|.++|.+++|+.||..+++|+
T Consensus        26 P~DsIS~l~FSP~~~--~~~~A------~SWD~tVR~wevq~~g~~~---~---ka~~~~~~PvL~v~WsddgskVf~g~   91 (347)
T KOG0647|consen   26 PEDSISALAFSPQAD--NLLAA------GSWDGTVRIWEVQNSGQLV---P---KAQQSHDGPVLDVCWSDDGSKVFSGG   91 (347)
T ss_pred             cccchheeEeccccC--ceEEe------cccCCceEEEEEecCCccc---c---hhhhccCCCeEEEEEccCCceEEeec
Confidence            446789999999432  55543      4589999999998653222   1   33456899999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC--eEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      .|+.+++||+.+++.. .+.       .|.++|.++.|-+...  .|++|+.|++|+.||++...++..+ ...+.+.++
T Consensus        92 ~Dk~~k~wDL~S~Q~~-~v~-------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~-~LPeRvYa~  162 (347)
T KOG0647|consen   92 CDKQAKLWDLASGQVS-QVA-------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL-QLPERVYAA  162 (347)
T ss_pred             cCCceEEEEccCCCee-eee-------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee-eccceeeeh
Confidence            9999999999998543 222       3889999999988655  8999999999999999988777655 345567766


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC--cEE
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKI  237 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~  237 (340)
                      ..-  ..+++.+..+..|.+|+++++... +......+-.+++++..++...     .+.++-+|.+.+..++.+  +.-
T Consensus       163 Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~-----~alGsiEGrv~iq~id~~~~~~n  235 (347)
T KOG0647|consen  163 DVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDG-----FALGSIEGRVAIQYIDDPNPKDN  235 (347)
T ss_pred             hcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCc-----eEeeeecceEEEEecCCCCccCc
Confidence            654  567888888999999999765432 2233334456899999998876     577888999999888876  333


Q ss_pred             eeeeccC---------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482          238 GHKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (340)
Q Consensus       238 ~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  306 (340)
                      ..++.|.         ..|++++|+|.-..|++++.||...+||-.....+.... .| ..+|++.+|+.+|.++|-+
T Consensus       236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~-~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE-TH-PQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC-cC-CCccceeEecCCCCEEEEE
Confidence            3455554         257889999999999999999999999988777666543 34 5799999999999988754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-30  Score=189.16  Aligned_cols=264  Identities=13%  Similarity=0.130  Sum_probs=204.3

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHL  136 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i  136 (340)
                      -..|++.|..+...-.|++||+++.|++|+|+.++.+.....+.    ....|.+||..++|..  -|..|++++.||.|
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~----~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkV   82 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA----ELTGHSGPVWKVAWAHPKFGTILASCSYDGKV   82 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee----EecCCCCCeeEEeecccccCcEeeEeecCceE
Confidence            45699999999888889999999999999999998765422221    1124899999999976  79999999999999


Q ss_pred             EEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCC--eeEEEeecCCCCceeeEEEccC--
Q 019482          137 RIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD--  208 (340)
Q Consensus       137 ~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--  208 (340)
                      .||.-++++  .......|...|++++|.|.  |-.|++++.||.|.|.+.+..  -....+...|.-.+++++|.|.  
T Consensus        83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~  162 (299)
T KOG1332|consen   83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA  162 (299)
T ss_pred             EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence            999987764  23344566779999999984  567999999999999998754  2233334455567999999986  


Q ss_pred             -CCc------ceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCC----CEEEEeeCCCcEEEEeccC
Q 019482          209 -GTK------PFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDG----KYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       209 -~~~------~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~i~d~~~  275 (340)
                       |..      --..-+++++.|+.|+||+..+++  ....+..|...++.++|.|.-    .+|+++++||++.||....
T Consensus       163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~  242 (299)
T KOG1332|consen  163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE  242 (299)
T ss_pred             CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence             310      001127999999999999998753  445588999999999999953    5899999999999998763


Q ss_pred             c--eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCc
Q 019482          276 M--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLS  327 (340)
Q Consensus       276 ~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  327 (340)
                      .  +-...+.... ...+..+.||+.|+.|+.++.|+.+.+|.-+...+|++..
T Consensus       243 e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~  295 (299)
T KOG1332|consen  243 EYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVG  295 (299)
T ss_pred             ccCcccccccccC-CcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEcc
Confidence            2  1111222222 4689999999999999999999999999988888776543

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.1e-29  Score=190.57  Aligned_cols=245  Identities=16%  Similarity=0.214  Sum_probs=190.3

Q ss_pred             CCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCc-eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           62 SEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        62 h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      .++.|.+++||| ....+++++.|++||+|+++.. ....+      ....|.++|.+++|+.||..+++|+.|+.+++|
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k------a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK------AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccch------hhhccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            356799999999 4556669999999999999874 22211      122488999999999999999999999999999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCC--eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSE--FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      |+.+++. ..+-.|..+|..+.|-+...  .|+|||.|.+|+.||.+...++.++...  +.++++..-..  .     +
T Consensus       100 DL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv~~p--m-----~  169 (347)
T KOG0647|consen  100 DLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADVLYP--M-----A  169 (347)
T ss_pred             EccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhccCc--e-----e
Confidence            9999854 45667888999999987554  8999999999999999999998888643  45666654322  2     5


Q ss_pred             EecCCcceEEEEECCCCcEEee--eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee-ccccccc-------
Q 019482          218 VQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH-WSKRLHL-------  287 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~-------  287 (340)
                      +.+..++.|.+|+++++..+..  ....+..+++++..+|....+.|+-+|.+.|..+..+.+.. .....|.       
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence            6677788999999987653211  12234568899999988888999999999999887752211 1112232       


Q ss_pred             -ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          288 -GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       288 -~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                       --.|++++|+|.-..|+|+|.||++.+||-+....
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k  285 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK  285 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecchhhhh
Confidence             13689999999999999999999999999876654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.4e-28  Score=186.66  Aligned_cols=269  Identities=15%  Similarity=0.144  Sum_probs=209.9

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..-|.++.|+|..  ..|||       +..|+.+++|+++...        +...+ .|..++.+++|.+ ...+++|+
T Consensus        12 P~d~IS~v~f~~~~--~~LLv-------ssWDgslrlYdv~~~~--------l~~~~-~~~~plL~c~F~d-~~~~~~G~   72 (323)
T KOG1036|consen   12 PEDGISSVKFSPSS--SDLLV-------SSWDGSLRLYDVPANS--------LKLKF-KHGAPLLDCAFAD-ESTIVTGG   72 (323)
T ss_pred             ChhceeeEEEcCcC--CcEEE-------EeccCcEEEEeccchh--------hhhhe-ecCCceeeeeccC-CceEEEec
Confidence            45668999999653  36777       7799999999998441        11222 3789999999986 55799999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      -||.|+.+|+.++.....        ..|..+|.|+.+++....+++|+.|++|++||.+.......+ ...+.|.++..
T Consensus        73 ~dg~vr~~Dln~~~~~~i--------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v  143 (323)
T KOG1036|consen   73 LDGQVRRYDLNTGNEDQI--------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDV  143 (323)
T ss_pred             cCceEEEEEecCCcceee--------ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEec
Confidence            999999999998764322        138899999999998889999999999999999874444333 33448888887


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEe-ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC----cEE
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----NKI  237 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~  237 (340)
                      .  ++.|++|..|..+.+||+++.....+. ....+-.+.++++-|++.-     .+.++-||.+.+=.++..    +..
T Consensus       144 ~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eG-----y~~sSieGRVavE~~d~s~~~~skk  216 (323)
T KOG1036|consen  144 S--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEG-----YVVSSIEGRVAVEYFDDSEEAQSKK  216 (323)
T ss_pred             c--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCc-----eEEEeecceEEEEccCCchHHhhhc
Confidence            6  788999999999999999986554322 2233457899999997765     577788998887666544    233


Q ss_pred             eeeeccC---------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482          238 GHKRLLR---------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       238 ~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      ..++.|.         .+|++++|+|-...|++|+.||.|.+||+.+.+.+..+...  ...|.+++|+.||..||.++.
T Consensus       217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence            4455553         47999999999999999999999999999998888776433  357999999999999999874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.8e-29  Score=196.47  Aligned_cols=202  Identities=37%  Similarity=0.576  Sum_probs=173.2

Q ss_pred             EEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-c
Q 019482          116 KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-R  194 (340)
Q Consensus       116 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~  194 (340)
                      .+++|+.+|..+++++.||++|+|+.++...+.....|+..|.++.|+|||++|++.+.| ..+||+.+++..+.... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999999888888888999999999999999999999999 99999999997777665 3


Q ss_pred             CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE-----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      ..+.....+.|+.++....+.+++.....+.|+.||+..+.-     ..........|++++.+++|++++.|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence            344567889999888555565566667777788877764432     111222235799999999999999999999999


Q ss_pred             EEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      |++..+.+.++..+..| ...|+.+.|+||.+++++.+.|....|..+..
T Consensus       307 i~~~~~lq~~~~vk~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999999999999999 56999999999999999999999999999876

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=6.8e-29  Score=213.38  Aligned_cols=252  Identities=14%  Similarity=0.164  Sum_probs=212.8

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee-eccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      .|...+.+..|+  +.++++++.+.+|++|+...+..... +.       .|.+.|.++++..-+.++++|+.|.++++|
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~-------GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW  276 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLV-------GHFGGVWGLAFPSGGDKLVSGSTDKTERVW  276 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeecc-------CCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence            356678889997  66899999999999999998876655 33       488999999998777899999999999999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      |..++++...+.+|.+.+.++...  ...+++|+.|.+|++|+++++..+..+.+ |.++|.++..+  +..     +++
T Consensus       277 d~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~-----lvs  346 (537)
T KOG0274|consen  277 DCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPL-----LVS  346 (537)
T ss_pred             ecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCE-----EEE
Confidence            999999999999999999988876  45688899999999999999999998876 67899999998  444     799


Q ss_pred             cCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc-eEeecccccccccceeeEEEec
Q 019482          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-EINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      ++.|+.|++||+.++++++.+.+|...|.++.+.+. ..+++|+.|+.|++||+++. +++..+ ..| ..-+..+.+  
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl-~~h-~~~v~~l~~--  421 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL-QGH-TSLVSSLLL--  421 (537)
T ss_pred             EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh-cCC-ccccccccc--
Confidence            999999999999999999999999999999988665 89999999999999999999 777766 345 456655544  


Q ss_pred             CCeEEEEEecCCcEEEEEecCCCCCCCCccccc-cccccccC
Q 019482          299 TQRVVLTASKEWGAMITKLTVPADWKGLSLPLL-HSHSQNSV  339 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-h~~~v~~v  339 (340)
                      .+++|++++.|+.|++||....+.   ...... |...|.++
T Consensus       422 ~~~~Lvs~~aD~~Ik~WD~~~~~~---~~~~~~~~~~~v~~l  460 (537)
T KOG0274|consen  422 RDNFLVSSSADGTIKLWDAEEGEC---LRTLEGRHVGGVSAL  460 (537)
T ss_pred             ccceeEeccccccEEEeecccCce---eeeeccCCcccEEEe
Confidence            568999999999999999876653   333333 55555544

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=5.4e-28  Score=205.66  Aligned_cols=195  Identities=16%  Similarity=0.119  Sum_probs=174.1

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc---ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      ..+++++.++.|++.+.|+..|.|-+|++++|-....+   +.|..+|+.++...-++.+++++.+|-+++||+.+...+
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            67889999999999999999999999999998877666   467789999999988899999999999999999988888


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      ..+....  .+..+..+.....     ++.+.+|-.|+++|..+.+.++.+.+|...|++++|||||++|++++.|++|+
T Consensus       529 ~~l~l~~--~~~~iv~hr~s~l-----~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr  601 (910)
T KOG1539|consen  529 KSLRLGS--SITGIVYHRVSDL-----LAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIR  601 (910)
T ss_pred             eeeccCC--Ccceeeeeehhhh-----hhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEE
Confidence            8776443  5778888877765     67788899999999999999999999999999999999999999999999999


Q ss_pred             EEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-CcEEEEEe
Q 019482          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKL  317 (340)
Q Consensus       270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw~~  317 (340)
                      +||+.++.++-.+..   ..+++++.|+|+|.+||+...| ..|++|.=
T Consensus       602 ~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  602 TWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             EEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            999999998876533   5789999999999999999998 78999963

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.8e-29  Score=189.37  Aligned_cols=254  Identities=14%  Similarity=0.203  Sum_probs=192.0

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee---------------------------------
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI---------------------------------   99 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~---------------------------------   99 (340)
                      |.....|++|.+.|++++|+.||++|++++.|+.|++|++++.....                                 
T Consensus        76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC
Confidence            34455789999999999999999999999999999999987643100                                 


Q ss_pred             -----eecccc-------C-------CCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482          100 -----NLLAKK-------M-------PPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus       100 -----~~~~~~-------~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                           ....+.       .       ..-.|...+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence                 000000       0       001133445555555677899999999999999998 77777666555567788


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEcc---CC-----eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTE---DG-----VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  232 (340)
                      +.+|+|+++++++..--|++|.+-   .|     ..+..+.+ |...|..++|+++..+     +++.+.||.+++||++
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG-H~saV~~~aFsn~S~r-----~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG-HQSAVLAAAFSNSSTR-----AVTVSKDGKWRIWDTD  308 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc-chhheeeeeeCCCcce-----eEEEecCCcEEEeecc
Confidence            999999999999988899999863   22     22344554 4567999999999998     8999999999999986


Q ss_pred             CC----c---EEeee----eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482          233 TW----N---KIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       233 ~~----~---~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      -.    +   .++..    ....+.-..+.++|+|+.|+... ...+++|..++++....++..| +..|.+++|+++|+
T Consensus       309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h-~~~Is~is~~~~g~  386 (420)
T KOG2096|consen  309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIH-STTISSISYSSDGK  386 (420)
T ss_pred             ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhh-cCceeeEEecCCCc
Confidence            31    1   11111    11223445899999999998875 4569999999999998888888 68999999999999


Q ss_pred             EEEEEecCCcEEEEE
Q 019482          302 VVLTASKEWGAMITK  316 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~  316 (340)
                      ++++++ |..+++..
T Consensus       387 ~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  387 YIATCG-DRYVRVIR  400 (420)
T ss_pred             EEeeec-ceeeeeec
Confidence            999996 56677665

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-29  Score=208.26  Aligned_cols=278  Identities=11%  Similarity=0.189  Sum_probs=226.3

Q ss_pred             cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--e
Q 019482           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--T   97 (340)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~   97 (340)
                      +.+.+||      .|+.|++|++........  ......++.|.+.|+.+....+|+.|++++.|-+|++|+.....  +
T Consensus        38 ryLfTgG------RDg~i~~W~~~~d~~~~s--~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c  109 (735)
T KOG0308|consen   38 RYLFTGG------RDGIIRLWSVTQDSNEPS--TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC  109 (735)
T ss_pred             ceEEecC------CCceEEEeccccccCCcc--cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence            4455555      566699999986554332  12345678899999999999999999999999999999998764  2


Q ss_pred             eeeeccccCCCCCCCCCeEEEEE-ecCCCeEEEccCCCcEEEEeCCCCce--e--------eccc-cCccceeEEEecCC
Q 019482           98 DINLLAKKMPPLQDAGPQKCLSF-SVDGSRFAAGGVDGHLRIMHWPSLRI--I--------LDEP-KAHKSVLDMDFSLD  165 (340)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~~d~~~~~~--~--------~~~~-~~~~~i~~~~~~~~  165 (340)
                      ...+.       .|...|.|+++ .++..++|+|+-|+.|.+||++++..  +        ..+. ++..+|++++.++.
T Consensus       110 ~stir-------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t  182 (735)
T KOG0308|consen  110 MSTIR-------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT  182 (735)
T ss_pred             Hhhhh-------cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence            22221       38899999999 78888999999999999999997732  1        1222 55668999999999


Q ss_pred             CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC
Q 019482          166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK  245 (340)
Q Consensus       166 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  245 (340)
                      |..|++|+..+.+++||.++++.+..+.+|. ..|..+..++||..     +++++.|++|++||+...+++.++..|..
T Consensus       183 ~t~ivsGgtek~lr~wDprt~~kimkLrGHT-dNVr~ll~~dDGt~-----~ls~sSDgtIrlWdLgqQrCl~T~~vH~e  256 (735)
T KOG0308|consen  183 GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT-DNVRVLLVNDDGTR-----LLSASSDGTIRLWDLGQQRCLATYIVHKE  256 (735)
T ss_pred             ceEEEecCcccceEEeccccccceeeeeccc-cceEEEEEcCCCCe-----EeecCCCceEEeeeccccceeeeEEeccC
Confidence            9999999999999999999999999998554 57999999999998     89999999999999999999999999999


Q ss_pred             CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       246 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      .++++..+|+-..+++|+.||.|..=|+++......+...  ..+|..+..+...+-+=+++.|+.|+=|.....
T Consensus       257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~  329 (735)
T KOG0308|consen  257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD  329 (735)
T ss_pred             ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeeccccceecCCccc
Confidence            9999999999999999999999999999885333222221  347888887755555566777888999987643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=7.5e-29  Score=216.70  Aligned_cols=252  Identities=21%  Similarity=0.286  Sum_probs=202.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe--cCCCEEEEEecCceeeeee----ccc-cCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           62 SEGDPMTIAVNPSGDDFVCST--TNGGCKLFEVYGGATDINL----LAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~----~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      ++..|.+++.+|+|..+|+|+  .|+.++||+.+.--.....    ... -.....|.+.|.|+.|+|||++||+|++|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            456699999999999999999  8999999997642211110    111 112235889999999999999999999999


Q ss_pred             cEEEEeCCC------------------CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC
Q 019482          135 HLRIMHWPS------------------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS  196 (340)
Q Consensus       135 ~i~~~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~  196 (340)
                      .|.+|....                  .+.+..+.+|...|..++|+|++.+|++++.|++|.+||.++.+.+..+..|+
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~  171 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ  171 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence            999998762                  12455677888899999999999999999999999999999998888888655


Q ss_pred             CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC------CCeeEEEECCCCCEEEEeeC----CC
Q 019482          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------KPASVLSISLDGKYLAMGSK----DG  266 (340)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~----dg  266 (340)
                       ..|..+.|.|-|++     +++-++|++|++|++.++...+.+..+-      .....+.|||||++|++...    -.
T Consensus       172 -s~VKGvs~DP~Gky-----~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~  245 (942)
T KOG0973|consen  172 -SLVKGVSWDPIGKY-----FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS  245 (942)
T ss_pred             -ccccceEECCccCe-----eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence             68999999999998     8999999999999988877666555442      34678999999999998743    34


Q ss_pred             cEEEEeccCceEeecccccccccceeeEEEecC-----Ce------------EEEEEecCCcEEEEEecCCC
Q 019482          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----QR------------VVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .+.|.+-.+.+.-..+ .+| ..++..++|+|.     ..            .+|+||.|+++.||....+.
T Consensus       246 ~~~IieR~tWk~~~~L-vGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R  315 (942)
T KOG0973|consen  246 TIAIIERGTWKVDKDL-VGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR  315 (942)
T ss_pred             eeEEEecCCceeeeee-ecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence            6888888777765555 477 569999999992     11            68899999999999986554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.9e-29  Score=212.82  Aligned_cols=267  Identities=15%  Similarity=0.172  Sum_probs=208.0

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ...+++..+++-..++.+++.- +.||.+..................-.-.+..++|+. +.++||+++..|.|.+||+.
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs~-lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRSL-LKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             cccceEeecCCcceeEEecccc-eeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            3467788888888888888764 788887654432222111011111223456788876 56799999999999999998


Q ss_pred             C---CceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          143 S---LRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       143 ~---~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      .   .+.+..+..|...+.++.|++ ..++|++|++||+|++||++..+...++... .+.|+.++|+|.....    ++
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-SESiRDV~fsp~~~~~----F~  193 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-SESIRDVKFSPGYGNK----FA  193 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc-chhhhceeeccCCCce----EE
Confidence            6   455667888888999999999 6678999999999999999999888888764 4679999999976542    67


Q ss_pred             ecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482          219 QRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  297 (340)
                      ++.+.|.+++||+|... +...+..|.+++.++.|+|++.+||+|+.|+.|+|||..+.+..... ..+...++..++|-
T Consensus       194 s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~-tInTiapv~rVkWR  272 (839)
T KOG0269|consen  194 SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH-TINTIAPVGRVKWR  272 (839)
T ss_pred             EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee-EEeecceeeeeeec
Confidence            88889999999999765 56678899999999999999999999999999999999875543332 23336799999999


Q ss_pred             cCCe-EEEEEec--CCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          298 PTQR-VVLTASK--EWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       298 ~~~~-~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      |+.+ .|++++.  |-.|+|||+.-|-  -++..+..|...++.+
T Consensus       273 P~~~~hLAtcsmv~dtsV~VWDvrRPY--IP~~t~~eH~~~vt~i  315 (839)
T KOG0269|consen  273 PARSYHLATCSMVVDTSVHVWDVRRPY--IPYATFLEHTDSVTGI  315 (839)
T ss_pred             cCccchhhhhhccccceEEEEeecccc--ccceeeeccCccccce
Confidence            9875 4666654  7889999998665  4777888898887655

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.7e-29  Score=211.08  Aligned_cols=270  Identities=14%  Similarity=0.159  Sum_probs=206.5

Q ss_pred             ceEEEEeCCCCCCcccCCeeeEEEecCC---CCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482           36 VLEIFSFDPKTTSVYTSPLVTYVFDESE---GDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      .+.+|.+++.....    .+...++.-.   -.+..+.|+. +.++||+++.+|.|.+||+........+.    ..-+|
T Consensus        61 ~lklyai~~~~~~~----~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~----~f~EH  132 (839)
T KOG0269|consen   61 LLKLYAINPNDFSE----KCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT----VFNEH  132 (839)
T ss_pred             ceeeEeeCcccCCc----ceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccchhhh----Hhhhh
Confidence            47888887655432    2222222211   2355678875 56799999999999999997631111110    11248


Q ss_pred             CCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          112 AGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       112 ~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      ...+.++.|++ ...+|++|++||+|++||++..+....+.+..+.|.+++|+| .+..|+++...|.+++||++.....
T Consensus       133 ~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~  212 (839)
T KOG0269|consen  133 ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC  212 (839)
T ss_pred             ccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH
Confidence            89999999998 667999999999999999999888888888778999999999 7888999999999999999976554


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-cCCCeeEEEECCCCCE-EEEee--CC
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKY-LAMGS--KD  265 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~-l~~~~--~d  265 (340)
                      ......|.++|.++.|+|++.+     +++|+.|+.|+|||..+.+....... ...++.++.|-|...+ |++++  .|
T Consensus       213 ~~k~~AH~GpV~c~nwhPnr~~-----lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d  287 (839)
T KOG0269|consen  213 EKKLTAHNGPVLCLNWHPNREW-----LATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD  287 (839)
T ss_pred             HHHhhcccCceEEEeecCCCce-----eeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcccc
Confidence            4444567789999999998887     89999999999999987654322222 2468999999997654 55554  37


Q ss_pred             CcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEecCCcEEEEEecC
Q 019482          266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       266 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      -.|+|||++...........| ...++.++|.. |-..+.+++.||.+....++.
T Consensus       288 tsV~VWDvrRPYIP~~t~~eH-~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  288 TSVHVWDVRRPYIPYATFLEH-TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             ceEEEEeeccccccceeeecc-CccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence            789999999887776666677 67899999965 557899999999988776654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.3e-28  Score=203.31  Aligned_cols=289  Identities=15%  Similarity=0.192  Sum_probs=217.1

Q ss_pred             EeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-----------CCe
Q 019482            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-----------GDD   77 (340)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~   77 (340)
                      ++.|.+.+..  +..       -..|..+.+|+++...+     ......+-.|...|+.+.--|-           ...
T Consensus       329 A~~Fdet~~k--lsc-------VYndhSlYvWDvrD~~k-----vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~c  394 (1080)
T KOG1408|consen  329 ACQFDETTDK--LSC-------VYNDHSLYVWDVRDVNK-----VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGC  394 (1080)
T ss_pred             EEEecCCCce--EEE-------EEcCceEEEEecccccc-----ccceeeeeeccceeeeeccccccccCcccccCCccc
Confidence            5566665442  222       23566799999873321     1222344568888888776551           125


Q ss_pred             EEEEecCCCEEEEEecCceee----eeecccc--------------------------CCCCCCCCCeEEEEEecCCCeE
Q 019482           78 FVCSTTNGGCKLFEVYGGATD----INLLAKK--------------------------MPPLQDAGPQKCLSFSVDGSRF  127 (340)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~----~~~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~l  127 (340)
                      +++++.|++|++|+++....-    ..+...+                          .........+++++.+|+|++|
T Consensus       395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL  474 (1080)
T KOG1408|consen  395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL  474 (1080)
T ss_pred             eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence            889999999999999862210    0000000                          0011224578999999999999


Q ss_pred             EEccCCCcEEEEeCCCCceeeccccCccceeEEEecC---CCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceee-
Q 019482          128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIEL-  202 (340)
Q Consensus       128 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~-  202 (340)
                      ++|..-|++++|++...+....+..|...|.|+.++.   ..++|++++.|.-|.+||+...-. +.++. .|...|++ 
T Consensus       475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssITsv  553 (1080)
T KOG1408|consen  475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSITSV  553 (1080)
T ss_pred             cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc-ccccceeEE
Confidence            9999999999999999888888888889999999975   356899999999999999864322 22222 22233444 


Q ss_pred             ------------------------------------------------EEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482          203 ------------------------------------------------CRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (340)
Q Consensus       203 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  234 (340)
                                                                      ++..|..++     +++++.|..|+|||+.++
T Consensus       554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-----v~t~cQDrnirif~i~sg  628 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-----VVTVCQDRNIRIFDIESG  628 (1080)
T ss_pred             EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce-----EEEEecccceEEEecccc
Confidence                                                            444444444     688899999999999999


Q ss_pred             cEEeeeecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482          235 NKIGHKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       235 ~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                      +..+.+++.   ++..-.+...|.|.|+++.+.|.++.++|+.+++++... .+| ...|+.+.|.+|-+.|++.+.||.
T Consensus       629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-~GH-sE~VTG~kF~nDCkHlISvsgDgC  706 (1080)
T KOG1408|consen  629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-TGH-SEAVTGVKFLNDCKHLISVSGDGC  706 (1080)
T ss_pred             ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-cCc-chheeeeeecccchhheeecCCce
Confidence            998888754   466788899999999999999999999999999999877 477 679999999999999999999999


Q ss_pred             EEEEEecC
Q 019482          312 AMITKLTV  319 (340)
Q Consensus       312 i~iw~~~~  319 (340)
                      |.||.+..
T Consensus       707 IFvW~lp~  714 (1080)
T KOG1408|consen  707 IFVWKLPL  714 (1080)
T ss_pred             EEEEECch
Confidence            99999975

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.7e-29  Score=208.03  Aligned_cols=247  Identities=17%  Similarity=0.203  Sum_probs=205.2

Q ss_pred             EEEEc-CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC--
Q 019482           68 TIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL--  144 (340)
Q Consensus        68 ~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--  144 (340)
                      .+..+ |.+++|++|++||.|++|++.......... -......|...|..+....+++.|++++.|.+|++|+...+  
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~  107 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT  107 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccc-hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc
Confidence            44454 366789999999999999986543311100 00111237788999999999999999999999999999876  


Q ss_pred             ceeeccccCccceeEEEe-cCCCCeEEEeeCCCeEEEEEccCCee--EE--------EeecCCCCceeeEEEccCCCcce
Q 019482          145 RIILDEPKAHKSVLDMDF-SLDSEFLATTSTDGSARIWKTEDGVA--WT--------FLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~v~iwd~~~~~~--~~--------~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      -+...+..|.+.|.|++. -++...+|+|+-|+.|.+||+.++..  +.        .+..++...+++++..+.|..  
T Consensus       108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~--  185 (735)
T KOG0308|consen  108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI--  185 (735)
T ss_pred             hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE--
Confidence            456667788889999999 77888999999999999999997622  22        222245567999999999965  


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                         +++|+..+.|++||.++++.+..+++|...|..+..++||..+++++.||+|++||+...+++..+ ..| ...|++
T Consensus       186 ---ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~-~vH-~e~VWa  260 (735)
T KOG0308|consen  186 ---IVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY-IVH-KEGVWA  260 (735)
T ss_pred             ---EEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE-Eec-cCceEE
Confidence               789999999999999999999999999999999999999999999999999999999999999886 467 457999


Q ss_pred             EEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          294 VEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       294 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      +.-+|+-..+.+|+.||.|..-++..+..
T Consensus       261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             EeeCCCcceEEecCCCCcEEecccCCchh
Confidence            99999999999999999999999987653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.1e-29  Score=187.35  Aligned_cols=263  Identities=13%  Similarity=0.145  Sum_probs=222.3

Q ss_pred             EEEecCCCCeeEEEEcC---CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           57 YVFDESEGDPMTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      .+-.||..+|..++|+|   +|-+|++++.|+.-.+-+-+++..+..+..       |.+.|....++.+....++++.|
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-------hkgavw~~~l~~na~~aasaaad   80 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-------HKGAVWSATLNKNATRAASAAAD   80 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-------cCcceeeeecCchhhhhhhhccc
Confidence            34578999999999986   888999999999888888888888777764       88999999999998899999999


Q ss_pred             CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      -+-++||.-++..+..+ .|..-|..++|+.|.++|++|+.+.-++|||++..+....-...+.+.|..+.|....+.  
T Consensus        81 ftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~--  157 (334)
T KOG0278|consen   81 FTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKC--  157 (334)
T ss_pred             chhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCce--
Confidence            99999999999988766 566789999999999999999999999999998765443333456678999999988876  


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                         ++++..|+.|++||.+++..++.+.. ..+++++.++++|++|.++ ..+.|.+||..+..+++....   ...|.+
T Consensus       158 ---iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~---P~nV~S  229 (334)
T KOG0278|consen  158 ---ILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM---PCNVES  229 (334)
T ss_pred             ---EEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC---cccccc
Confidence               77889999999999999999877765 4589999999999988776 456799999999998877653   347999


Q ss_pred             EEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          294 VEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       294 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      .+.+|+...+++|+.|+.++.||+....+...  ...+|.+.|.+|
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcV  273 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCV  273 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeee--cccCCCCceEEE
Confidence            99999999999999999999999987765222  247787777665

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.2e-29  Score=194.98  Aligned_cols=245  Identities=13%  Similarity=0.180  Sum_probs=206.0

Q ss_pred             EEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482           57 YVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  135 (340)
                      ..|.||.+.|.+++=+|.. ..+++|+.||.|+|||+....+...+..       |.+.|..+++..  ..+++++.|.+
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A-------H~G~V~Gi~v~~--~~~~tvgdDKt  130 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA-------HEGLVRGICVTQ--TSFFTVGDDKT  130 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec-------ccCceeeEEecc--cceEEecCCcc
Confidence            3579999999999999977 7899999999999999998877666654       889999999987  57889999999


Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      |+.|.++. .....+ .....+..+.-+..+..++|++.  .|.|||.+...++..+..+.+ .+.++.|+|....+   
T Consensus       131 vK~wk~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsI---  202 (433)
T KOG0268|consen  131 VKQWKIDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSI---  202 (433)
T ss_pred             eeeeeccC-Ccceee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchh---
Confidence            99999775 333333 33456778887777888999975  599999999999999987664 69999999998764   


Q ss_pred             EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  295 (340)
                       +++++.|+.|.+||+++..+++..... -.-+.++|+|.+-.+++|++|..++.||++..+.......+| .+.|.++.
T Consensus       203 -Las~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVd  279 (433)
T KOG0268|consen  203 -LASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVD  279 (433)
T ss_pred             -eeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEec
Confidence             678889999999999999987665432 345789999988889999999999999999877666666677 67999999


Q ss_pred             EecCCeEEEEEecCCcEEEEEecCCC
Q 019482          296 FCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       296 ~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      |||.|+-+++||.|.+|+||..+...
T Consensus       280 fsptG~EfvsgsyDksIRIf~~~~~~  305 (433)
T KOG0268|consen  280 FSPTGQEFVSGSYDKSIRIFPVNHGH  305 (433)
T ss_pred             cCCCcchhccccccceEEEeecCCCc
Confidence            99999999999999999999987544

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.2e-27  Score=181.72  Aligned_cols=242  Identities=16%  Similarity=0.249  Sum_probs=191.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ++.|.++.|+|.+..|++++.||.+++|++........        +.|..++.+++|.++ ..+++|+-||.|+.+|+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~--------~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK--------FKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh--------eecCCceeeeeccCC-ceEEEeccCceEEEEEec
Confidence            56799999999999999999999999999987743332        347899999999874 478999999999999999


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (340)
                      +++... +..|..+|.++..++....+++|+.|++|++||.+.......+.  ....|.++..+.+  .     ++.++.
T Consensus        84 ~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~g~--~-----LvVg~~  153 (323)
T KOG1036|consen   84 TGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVSGN--R-----LVVGTS  153 (323)
T ss_pred             CCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEeccCC--E-----EEEeec
Confidence            887653 55677899999999988899999999999999999865555554  3346888876543  3     788899


Q ss_pred             cceEEEEECCCCcEEeee--eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe---eccccccc--------cc
Q 019482          223 KALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWSKRLHL--------GT  289 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~--------~~  289 (340)
                      +..+.+||+++.....+.  ...+..+.++++-|++.=.++++-||.|.+=.+...+..   ......|.        .-
T Consensus       154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y  233 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY  233 (323)
T ss_pred             CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence            999999999987654322  233467899999998888899999999988666554111   11112221        13


Q ss_pred             ceeeEEEecCCeEEEEEecCCcEEEEEecCCCCC
Q 019482          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (340)
Q Consensus       290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (340)
                      ||++++|+|--..|+||+.||.|.+|++...+..
T Consensus       234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             EeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence            8999999999999999999999999999876643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=5.5e-26  Score=187.91  Aligned_cols=262  Identities=16%  Similarity=0.218  Sum_probs=192.1

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE-EEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      .++.+.+|+.+        +......+..|. .+.+++|+|+++.+ ++++.++.|++||..+++....+..       +
T Consensus         9 ~d~~v~~~d~~--------t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-------~   72 (300)
T TIGR03866         9 KDNTISVIDTA--------TLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-------G   72 (300)
T ss_pred             CCCEEEEEECC--------CCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-------C
Confidence            56679999875        222334455553 47789999999976 5667789999999988765443321       1


Q ss_pred             CCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCC-eEEEEEccCCeeE
Q 019482          112 AGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAW  189 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~  189 (340)
                       ..+..+.|+|+++.+++ +..++.|++||+++.+.+..+. ....+.+++|+|+++++++++.++ .+.+||.++++..
T Consensus        73 -~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~  150 (300)
T TIGR03866        73 -PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV  150 (300)
T ss_pred             -CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE
Confidence             23467899999987755 4568999999999877665553 233467899999999999888765 5677899888776


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-------CCeeEEEECCCCCEEEEe
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG  262 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~  262 (340)
                      ......  ..+..++|+|+++.+    ++++..++.|++||+++++.+..+..+.       .....++|+|++++++++
T Consensus       151 ~~~~~~--~~~~~~~~s~dg~~l----~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       151 DNVLVD--QRPRFAEFTADGKEL----WVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             EEEEcC--CCccEEEECCCCCEE----EEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            655422  346789999999862    2445568999999999988766554221       123468899999986554


Q ss_pred             -eCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEecCCC
Q 019482          263 -SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTVPA  321 (340)
Q Consensus       263 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~  321 (340)
                       +.++.+.+||.++++.......   ...+.+++|+|+|++|+++ +.+|.|.+|++....
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence             4567899999998887654422   3478999999999998876 468999999997654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.2e-26  Score=193.32  Aligned_cols=284  Identities=14%  Similarity=0.176  Sum_probs=227.3

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEEEEe
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~   82 (340)
                      +.+|+|+|++....  . +|.      +..++.|+||++..       ...+..++.+++ ..|.+++|+ ++..|.+.+
T Consensus        25 Ps~I~slA~s~kS~--~-lAv------sRt~g~IEiwN~~~-------~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g   87 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSN--Q-LAV------SRTDGNIEIWNLSN-------NWFLEPVIHGPEDRSIESLAWA-EGGRLFSSG   87 (691)
T ss_pred             ccceEEEEEeccCC--c-eee------eccCCcEEEEccCC-------CceeeEEEecCCCCceeeEEEc-cCCeEEeec
Confidence            46799999998644  3 444      44677799999874       344556677765 469999999 455788889


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee--ccccCccceeEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHKSVLDM  160 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~i~~~  160 (340)
                      .+|.|.-||+.+.+.......       ..+.|++++.+|.+..++.|+.||.+..++...++...  .+....+.+.++
T Consensus        88 ~sg~i~EwDl~~lk~~~~~d~-------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl  160 (691)
T KOG2048|consen   88 LSGSITEWDLHTLKQKYNIDS-------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL  160 (691)
T ss_pred             CCceEEEEecccCceeEEecC-------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence            999999999999887665543       45899999999999999999999988888877665432  233445689999


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      +|+|++..+++|+.||.|++||...++.+....       .....-|+++.|-.++.      ++++...|.|.+||...
T Consensus       161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t------I~sgDS~G~V~FWd~~~  234 (691)
T KOG2048|consen  161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST------IASGDSAGTVTFWDSIF  234 (691)
T ss_pred             EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc------EEEecCCceEEEEcccC
Confidence            999999999999999999999999988776221       11234578888888887      79999999999999999


Q ss_pred             CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE--eecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       234 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                      +..++....|...|.+++..+++.++++++.|+.|..|...+...  +......++...+.+++..++  .+++|+.|..
T Consensus       235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~  312 (691)
T KOG2048|consen  235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT  312 (691)
T ss_pred             cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence            999999999999999999999999999999999999998877643  222222233678999999876  8999999998


Q ss_pred             EEEEEecC
Q 019482          312 AMITKLTV  319 (340)
Q Consensus       312 i~iw~~~~  319 (340)
                      +.+-....
T Consensus       313 l~i~~s~~  320 (691)
T KOG2048|consen  313 LAICSSRE  320 (691)
T ss_pred             EEEccccc
Confidence            88776643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-26  Score=167.53  Aligned_cols=247  Identities=17%  Similarity=0.231  Sum_probs=192.4

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee----------eeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT----------DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      ....|.+++|+|.|.+.++|+...+++|-....-..          ......  .....|.+.|+|.+|+|+|++|++|+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~--kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC--KRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe--eeccccCccEEEEEecCccCeEEecC
Confidence            456799999999999999999999998865432110          000111  11123789999999999999999999


Q ss_pred             CCCcEEEEeCCCCce-----eeccccCccceeEEEecCC----CCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCcee
Q 019482          132 VDGHLRIMHWPSLRI-----ILDEPKAHKSVLDMDFSLD----SEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIE  201 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~-----~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~  201 (340)
                      .|.+|++...+...+     -..+.-|.+.|..++|-.+    +.+|++++ .|..|++-|...|+....+.++. +.|.
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght-ghil  187 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT-GHIL  187 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc-ccEE
Confidence            999999987654322     2235557778999999543    45677765 46788888999999988887655 4455


Q ss_pred             eEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-------CCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      ++ ++-++-.     +++++.|.+|++||++-..++..+...       ...|.+++..|.|++|++|-.|....+||++
T Consensus       188 al-yswn~~m-----~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  188 AL-YSWNGAM-----FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR  261 (350)
T ss_pred             EE-EEecCcE-----EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence            44 2333443     789999999999999988777665322       2578999999999999999999999999999


Q ss_pred             CceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       275 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      .+++++.+ ..| ...|+++.|+|...++++++.|..|++-++.-
T Consensus       262 g~r~iq~f-~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  262 GGRMIQRF-HPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCceeeee-CCC-ccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            99999877 456 67999999999999999999999999999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.3e-27  Score=188.55  Aligned_cols=239  Identities=21%  Similarity=0.235  Sum_probs=195.4

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      .++|.+++-+|+|.+|+.|+..|.+++|.+.++.....+..       |...|+|+.|+.||.+|++|+.||.|.+|.+.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-------hccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence            56799999999999999998999999999999987665533       88999999999999999999999999999873


Q ss_pred             ---------CCceeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          143 ---------SLRIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       143 ---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                               +-++...+..|.-+|+++...+.  ..+++|+|.|.++++||+..+..+.++..  ...+.+++.+|.+..
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f--p~si~av~lDpae~~  231 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF--PSSIKAVALDPAERV  231 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec--CCcceeEEEcccccE
Confidence                     22445566667779999998774  45799999999999999999999888864  457999999999987


Q ss_pred             ceEEEEEecCCcceEEEEECCCCc----------------EEeeeeccCC--CeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWN----------------KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                           ++.|+.+|.|.+.++.+..                .+..+.+|.+  +|+|++++-||..|++|+.||.++|||+
T Consensus       232 -----~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  232 -----VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             -----EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence                 7889999999988875432                3445666766  9999999999999999999999999999


Q ss_pred             cCceEeecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEe
Q 019482          274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKL  317 (340)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~  317 (340)
                      .+.++++.+..  ..++|+.+.+.|-.+-.+.+ ...-.+..|++
T Consensus       307 ~S~Q~iRtl~~--~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  307 YSKQCIRTLQT--SKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             chHHHHHHHhh--hccccceeEeeccccceecccccCccCCchHh
Confidence            99999988753  25799999997754433332 22333444444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.8e-27  Score=179.48  Aligned_cols=237  Identities=15%  Similarity=0.181  Sum_probs=192.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC--eEEEE
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVCS   81 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~   81 (340)
                      .++|+|++-+.     .++|+|+      .|.+|.||++...        ...-.+-.|.+.|+++.|.+.-.  .|++|
T Consensus        43 ~~sitavAVs~-----~~~aSGs------sDetI~IYDm~k~--------~qlg~ll~HagsitaL~F~~~~S~shLlS~  103 (362)
T KOG0294|consen   43 AGSITALAVSG-----PYVASGS------SDETIHIYDMRKR--------KQLGILLSHAGSITALKFYPPLSKSHLLSG  103 (362)
T ss_pred             ccceeEEEecc-----eeEeccC------CCCcEEEEeccch--------hhhcceeccccceEEEEecCCcchhheeee
Confidence            46677777765     4677666      5667999998732        22234567999999999998654  89999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +.||.|.+|+...-.....+..       |.+.|+.++.+|.+++.++.+.|+.+++||+-+|+......- ....+.+.
T Consensus       104 sdDG~i~iw~~~~W~~~~slK~-------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~  175 (362)
T KOG0294|consen  104 SDDGHIIIWRVGSWELLKSLKA-------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVS  175 (362)
T ss_pred             cCCCcEEEEEcCCeEEeeeecc-------cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeE
Confidence            9999999999988876666543       778899999999999999999999999999988876544432 22345599


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      |+|.|.+++.+..+ .|-+|.+++......+...  ..+.++.|...+.      +++++++..|.+||.+...+...+.
T Consensus       176 w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~--~r~l~~~~l~~~~------L~vG~d~~~i~~~D~ds~~~~~~~~  246 (362)
T KOG0294|consen  176 WSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP--KRILCATFLDGSE------LLVGGDNEWISLKDTDSDTPLTEFL  246 (362)
T ss_pred             EcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc--ccceeeeecCCce------EEEecCCceEEEeccCCCccceeee
Confidence            99999988888764 6999999887766665422  4577888877766      7999999999999999999999999


Q ss_pred             ccCCCeeEEEE--CCCCCEEEEeeCCCcEEEEeccCc
Q 019482          242 LLRKPASVLSI--SLDGKYLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       242 ~~~~~i~~~~~--s~~~~~l~~~~~dg~i~i~d~~~~  276 (340)
                      .|...|-.+.+  .|++.+|++++.||.|++||++..
T Consensus       247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99999998874  567899999999999999999875

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=4.2e-27  Score=196.50  Aligned_cols=257  Identities=12%  Similarity=0.132  Sum_probs=213.5

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeE-EEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCC
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMT-IAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP  108 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  108 (340)
                      ++.++++++|.-.  .+    .......+.+|.+-|.. +++-+ ++-++++|+.|..+.+|.+........+..     
T Consensus        31 ~sRd~t~~vw~~~--~~----~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lkg-----   99 (745)
T KOG0301|consen   31 GSRDGTVKVWAKK--GK----QYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKG-----   99 (745)
T ss_pred             cCCCCceeeeecc--Cc----ccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhc-----
Confidence            3456779999753  22    12223456778887777 88876 455799999999999999988877665543     


Q ss_pred             CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       109 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  188 (340)
                        |...|.|+....++. +++|+.|.++++|...  ++.....+|...|++++.-|++ .++||+.|.+|++|.-  ++.
T Consensus       100 --H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~  171 (745)
T KOG0301|consen  100 --HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL  171 (745)
T ss_pred             --cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch
Confidence              889999999888886 9999999999999754  5556688999999999999987 8999999999999985  778


Q ss_pred             EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (340)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  268 (340)
                      ++++.+ |...|+.+++-+++.      +++++.||.|++|++ +++.+..+.+|..-+.+++..+++..++++++|+++
T Consensus       172 l~tf~g-HtD~VRgL~vl~~~~------flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtl  243 (745)
T KOG0301|consen  172 LKTFSG-HTDCVRGLAVLDDSH------FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTL  243 (745)
T ss_pred             hhhhcc-chhheeeeEEecCCC------eEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceE
Confidence            888886 556799999999988      799999999999999 788889999999999999988888999999999999


Q ss_pred             EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +||+..  ++.+.+.  +....|+++.+-++|. |++|+.||.|+||....
T Consensus       244 riW~~~--e~~q~I~--lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  244 RIWKKD--ECVQVIT--LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEeecC--ceEEEEe--cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            999987  5554443  2245899999999887 88889999999999874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.9e-27  Score=179.57  Aligned_cols=264  Identities=15%  Similarity=0.131  Sum_probs=194.5

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHL  136 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i  136 (340)
                      -.+|.+-|+++.|.+.|+++|+|+.|++++|||.++..........-   -.|.+.|..+.|.+  -|+.+|+++.|+++
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEEEEecCccccceEEEEecCCce
Confidence            34788999999999999999999999999999976554333332211   12889999999966  58899999999999


Q ss_pred             EEEeCCC---------CceeeccccCccceeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEee------------
Q 019482          137 RIMHWPS---------LRIILDEPKAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLT------------  193 (340)
Q Consensus       137 ~~~d~~~---------~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------------  193 (340)
                      .||.-..         ......+......|+++.|.|  -|-.|++++.||.+|||+....-.+....            
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9997521         112233445566899999999  46789999999999999876543322221            


Q ss_pred             cCCCCceeeEEEccCCCcceEEEEEecCCc-----ceEEEEECCCC----cEEeeeeccCCCeeEEEECCC----CCEEE
Q 019482          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTW----NKIGHKRLLRKPASVLSISLD----GKYLA  260 (340)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~----~~~l~  260 (340)
                      ..+..+..|+.|+|..-..-+  ++.++.+     +.++||.....    ..+.++..+..+|+.++|.|+    -..||
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~--iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPL--IAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             ccccCcceEEeeccccccCce--EEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence            123446788999976433222  3444433     47888876543    356667789999999999995    35799


Q ss_pred             EeeCCCcEEEEeccCce------------------Eeec-ccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          261 MGSKDGDICVVDVKKME------------------INHW-SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       261 ~~~~dg~i~i~d~~~~~------------------~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +++.|| |+||.++...                  .... ....| ...|+.+.|+-.|..|++.|.||.|++|.....+
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence            999999 9999987411                  1111 12345 6799999999999999999999999999998888


Q ss_pred             CCCCCccc
Q 019482          322 DWKGLSLP  329 (340)
Q Consensus       322 ~~~~~~~~  329 (340)
                      .|+.....
T Consensus       322 ~~kC~sv~  329 (361)
T KOG2445|consen  322 LWKCTSVL  329 (361)
T ss_pred             hheeeeEE
Confidence            77654433

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.96  E-value=3.8e-27  Score=187.82  Aligned_cols=291  Identities=16%  Similarity=0.186  Sum_probs=214.4

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEEe
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~   82 (340)
                      .++|+|++|.|..+ ..++|.|+..|.      |-+|+++.+...    ..-.+.+..|..+|.++.|+|. ...+++.+
T Consensus       186 ~~Rit~l~fHPt~~-~~lva~GdK~G~------VG~Wn~~~~~~d----~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  186 DRRITSLAFHPTEN-RKLVAVGDKGGQ------VGLWNFGTQEKD----KDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             ccceEEEEecccCc-ceEEEEccCCCc------EEEEecCCCCCc----cCceEEeccCCccccceEecCCChhheeeec
Confidence            57999999999653 478888886555      999999633322    2233567889999999999994 46899999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce-eeccccCccceeEEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-ILDEPKAHKSVLDMD  161 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~~i~~~~  161 (340)
                      .||+|++-|++.......+...     ........+.|+.+...++.+..=|...+||+++... ...+.-|...|.+++
T Consensus       255 yDGtiR~~D~~~~i~e~v~s~~-----~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  255 YDGTIRLQDFEGNISEEVLSLD-----TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA  329 (498)
T ss_pred             cCceeeeeeecchhhHHHhhcC-----ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence            9999999999876543322221     1334567788888877788887778999999998765 555666777999999


Q ss_pred             ecC-CCCeEEEeeCCCeEEEEEccCCeeEEE---eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC----C
Q 019482          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----T  233 (340)
Q Consensus       162 ~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~----~  233 (340)
                      ++| ...+|+|++.|++++|||++.-.....   ....|...|.++.|||.+..     +++.+.|..|+|||..    .
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-----l~TT~~D~~IRv~dss~~sa~  404 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-----LLTTCQDNEIRVFDSSCISAK  404 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-----eEeeccCCceEEeeccccccc
Confidence            999 556799999999999999986433221   11245668999999999887     7899999999999984    2


Q ss_pred             CcEEeeeeccC----C--CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee-eEEEecCCeEEEEE
Q 019482          234 WNKIGHKRLLR----K--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA-LVEFCPTQRVVLTA  306 (340)
Q Consensus       234 ~~~~~~~~~~~----~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~  306 (340)
                      ..+...+ .|.    .  ......|.|+..++++|..-..|-|+|-..++.+..+.... ...|. -..|+|-+..+++|
T Consensus       405 ~~p~~~I-~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~aG  482 (498)
T KOG4328|consen  405 DEPLGTI-PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPMRDTLAAG  482 (498)
T ss_pred             CCcccee-eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeecccccceecc
Confidence            2232222 222    1  13346899999999999999999999999998776653333 22344 34799988745554


Q ss_pred             -ecCCcEEEEEe
Q 019482          307 -SKEWGAMITKL  317 (340)
Q Consensus       307 -~~dg~i~iw~~  317 (340)
                       +..|.|+||.-
T Consensus       483 ~~s~Gki~vft~  494 (498)
T KOG4328|consen  483 GNSSGKIYVFTN  494 (498)
T ss_pred             CCccceEEEEec
Confidence             45688888864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.96  E-value=4.1e-26  Score=184.15  Aligned_cols=274  Identities=16%  Similarity=0.218  Sum_probs=208.8

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecC-CCCeeEEEEcCCCCeEEEEecC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-EGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      -|+.++|.|...  +++++-+       .+.+.+|..  .+..+.+   ..-.++.+ .+-|.|++|.++|+ +++|..+
T Consensus       202 ~v~~a~FHPtd~--nliit~G-------k~H~~Fw~~--~~~~l~k---~~~~fek~ekk~Vl~v~F~engd-viTgDS~  266 (626)
T KOG2106|consen  202 VVFLATFHPTDP--NLIITCG-------KGHLYFWTL--RGGSLVK---RQGIFEKREKKFVLCVTFLENGD-VITGDSG  266 (626)
T ss_pred             eEEEEEeccCCC--cEEEEeC-------CceEEEEEc--cCCceEE---EeeccccccceEEEEEEEcCCCC-EEeecCC
Confidence            467889999644  5665333       233777754  3433322   11223333 35699999999986 7899999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-----------------
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----------------  147 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----------------  147 (340)
                      |.|.||+..+.+......       .|.+.|.++....+|.+ ++|+.|..|..||-. -+..                 
T Consensus       267 G~i~Iw~~~~~~~~k~~~-------aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e  337 (626)
T KOG2106|consen  267 GNILIWSKGTNRISKQVH-------AHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAE  337 (626)
T ss_pred             ceEEEEeCCCceEEeEee-------ecCCceEEEEEecCccE-eecCccceEEecccc-ccccccccCchhcCCeeEEec
Confidence            999999997776554443       38899999999999965 559999999999831 1000                 


Q ss_pred             ------------------------eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeE
Q 019482          148 ------------------------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (340)
Q Consensus       148 ------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~  203 (340)
                                              ....+|.+....++.+|+.+.+++++.|+.+++|+  ..+++.+..  ...+..++
T Consensus       338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~--~~d~~~~~  413 (626)
T KOG2106|consen  338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI--IEDPAECA  413 (626)
T ss_pred             CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE--ecCceeEe
Confidence                                    01234555778899999999999999999999999  445544443  34578999


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-Eeecc
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWS  282 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~  282 (340)
                      .|+|.|.      ++.+...|...+.|..+...+..... ..+++++.|+|+|.+||+|+.|+.|+||-+.... .....
T Consensus       414 ~fhpsg~------va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~  486 (626)
T KOG2106|consen  414 DFHPSGV------VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV  486 (626)
T ss_pred             eccCcce------EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence            9999994      78899999999999999666654444 8899999999999999999999999999987543 33333


Q ss_pred             cccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       283 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  315 (340)
                      .. +.+.+|+.+.|++|+++|.+-+.|-.+..|
T Consensus       487 ~k-~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW  518 (626)
T KOG2106|consen  487 GK-CSGSPITHLDWSSDSQFLVSNSGDYEILYW  518 (626)
T ss_pred             ee-ecCceeEEeeecCCCceEEeccCceEEEEE
Confidence            33 336899999999999999999999999999

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.96  E-value=2.2e-27  Score=198.15  Aligned_cols=322  Identities=14%  Similarity=0.122  Sum_probs=229.2

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCc-----------ccCC--ee----------eEEEec
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV-----------YTSP--LV----------TYVFDE   61 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~-----------~~~~--~~----------~~~~~~   61 (340)
                      .-|.+++|.....+..++|+++      .|..|+||.+...+..-           ...+  ..          ...+.|
T Consensus       192 DWIrsl~f~~~~~~~~~laS~S------QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G  265 (764)
T KOG1063|consen  192 DWIRSLAFARLGGDDLLLASSS------QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG  265 (764)
T ss_pred             hhhhhhhhhccCCCcEEEEecC------CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence            4467788887555456777666      56679999986444110           0001  01          123459


Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      |++-|+++.|+|.+..|++++.|.++.+|...+...+......-...-...+......|+|+++.+++-+..|..++|..
T Consensus       266 HeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt  345 (764)
T KOG1063|consen  266 HEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKT  345 (764)
T ss_pred             cccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEec
Confidence            99999999999999999999999999999988764332221111000123456788999999999999999999999983


Q ss_pred             CCC---ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC---------------------------------
Q 019482          142 PSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---------------------------------  185 (340)
Q Consensus       142 ~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---------------------------------  185 (340)
                      ++.   .....+.+|.+.|.+++|+|.|.+|++.+.|.+-|+|-.-.                                 
T Consensus       346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg  425 (764)
T KOG1063|consen  346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG  425 (764)
T ss_pred             cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence            321   23344567888999999999999999999999888862110                                 


Q ss_pred             --CeeEEE------------------------------------------------------------------------
Q 019482          186 --GVAWTF------------------------------------------------------------------------  191 (340)
Q Consensus       186 --~~~~~~------------------------------------------------------------------------  191 (340)
                        .+.++.                                                                        
T Consensus       426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~  505 (764)
T KOG1063|consen  426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT  505 (764)
T ss_pred             ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence              000000                                                                        


Q ss_pred             ---------------eecCCCCceeeEEEccCCCcceEEEEEecC-----CcceEEEEECCCCcEEeeeeccCCCeeEEE
Q 019482          192 ---------------LTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----DKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (340)
Q Consensus       192 ---------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  251 (340)
                                     +. +|...|++++.+|+++.     ++++.     ....|++|+..++..++.+..|.-.|+.++
T Consensus       506 EdqLq~~tLwPEv~KLY-GHGyEv~~l~~s~~gnl-----iASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~  579 (764)
T KOG1063|consen  506 EDQLQQNTLWPEVHKLY-GHGYEVYALAISPTGNL-----IASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA  579 (764)
T ss_pred             HHHHHHhccchhhHHhc-cCceeEEEEEecCCCCE-----EeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence                           00 12245788999999885     34443     345699999999999989999999999999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEeccCceEeec---ccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCc-
Q 019482          252 ISLDGKYLAMGSKDGDICVVDVKKMEINHW---SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLS-  327 (340)
Q Consensus       252 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-  327 (340)
                      |||||++|++.+.|+++.+|..........   ....| ..-|+++.|+|++.+++|+|.|.+|+||.......-.... 
T Consensus       580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~  658 (764)
T KOG1063|consen  580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF  658 (764)
T ss_pred             ECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh
Confidence            999999999999999999998855332211   13456 5689999999999999999999999999997652211111 


Q ss_pred             cccccccccccC
Q 019482          328 LPLLHSHSQNSV  339 (340)
Q Consensus       328 ~~~~h~~~v~~v  339 (340)
                      .-..+...|+++
T Consensus       659 a~~~~~~aVTAv  670 (764)
T KOG1063|consen  659 ACLKFSLAVTAV  670 (764)
T ss_pred             chhccCCceeeE
Confidence            334455555554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.3e-27  Score=174.54  Aligned_cols=239  Identities=13%  Similarity=0.123  Sum_probs=184.8

Q ss_pred             EcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEEEecCCCEEEEEecCceeeeee
Q 019482           24 LGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINL  101 (340)
Q Consensus        24 ~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~  101 (340)
                      +|.+..+.++|++|+|+...+...     ..+..+|.||.++|..++|..  .|.+||+++.||+|.||.-..++..+..
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~-----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~   96 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQ-----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY   96 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCC-----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence            333334466888899999986653     245678999999999999965  7999999999999999998877543222


Q ss_pred             ccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCC-c--eeeccccCccceeEEEecCC---C-------
Q 019482          102 LAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSL-R--IILDEPKAHKSVLDMDFSLD---S-------  166 (340)
Q Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~-~--~~~~~~~~~~~i~~~~~~~~---~-------  166 (340)
                      .     ...|...|++++|.|.  |-.|++++.||.|.+.+.++. .  .......|.-.++++.|.|.   |       
T Consensus        97 e-----~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~  171 (299)
T KOG1332|consen   97 E-----HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP  171 (299)
T ss_pred             h-----hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCc
Confidence            2     2238899999999995  568899999999999988754 1  22334456668999999985   4       


Q ss_pred             ----CeEEEeeCCCeEEEEEccCCeeE--EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc---EE
Q 019482          167 ----EFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KI  237 (340)
Q Consensus       167 ----~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~  237 (340)
                          +.|++|+.|..|+||+..+++-+  .++ ..|...|+.++|.|.-.. -..++++++.|+.+.||-.+...   ..
T Consensus       172 ~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~e~wk~  249 (299)
T KOG1332|consen  172 AAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEYEPWKK  249 (299)
T ss_pred             ccccceeeccCCccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCccCcccc
Confidence                56999999999999999876322  223 356678999999998643 23458999999999999877321   12


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      ..+......+..+.||+.|+.|++++.|+.+.+|.-.
T Consensus       250 tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  250 TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            2344456789999999999999999999999999754

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8e-27  Score=200.61  Aligned_cols=244  Identities=11%  Similarity=0.139  Sum_probs=204.2

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      .|...-+.++|.|+|++|++++.||.|++|+..... ....+.       .+...|.+++.  ++.+|++++.+++|.+|
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-------~~g~~v~~ia~--~s~~f~~~s~~~tv~~y   81 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-------ISGELVSSIAC--YSNHFLTGSEQNTVLRY   81 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-------ccCceeEEEee--cccceEEeeccceEEEe
Confidence            588889999999999999999999999999987663 221111       04456666654  56699999999999999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      .+..++.-..+....-++.+++++.+|+++|.|+.|-.|++-++.+......+.+ +.++|.++.|+|.+..     +++
T Consensus        82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~f-----LAv  155 (933)
T KOG1274|consen   82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNF-----LAV  155 (933)
T ss_pred             eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCE-----EEE
Confidence            9998876555555566899999999999999999999999999998888888874 5679999999999997     788


Q ss_pred             cCCcceEEEEECCCCcEEeeeecc--------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482          220 RGDKALLAVYDISTWNKIGHKRLL--------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i  291 (340)
                      .+.||.+++||+.++.....+..-        ...+..++|+|+|..+++.+.|+.|++|+..+.+....+...+....+
T Consensus       156 ss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~  235 (933)
T KOG1274|consen  156 SSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKF  235 (933)
T ss_pred             EecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccce
Confidence            889999999999988765444322        245678999999888888889999999999999888777655545569


Q ss_pred             eeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          292 ALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ..++|+|+|+|||+++.||.|.||+++.
T Consensus       236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  236 SDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             EEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            9999999999999999999999999984

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.6e-29  Score=209.05  Aligned_cols=237  Identities=18%  Similarity=0.257  Sum_probs=212.5

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  138 (340)
                      +-.|...|.++..-..++.+++|+.|..+-+|.+........+.       .|..+|.++.|+++..+|++|+.+|+|++
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-------~hespIeSl~f~~~E~LlaagsasgtiK~   96 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT-------GHESPIESLTFDTSERLLAAGSASGTIKV   96 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee-------ccCCcceeeecCcchhhhcccccCCceee
Confidence            33588888888887788899999999989999987665554433       38899999999999999999999999999


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      ||++..+.+..+.+|...+..+.|+|-+.+++.|+.|+.+++||.+...+...+.. +...+..+.|+|+|++     ++
T Consensus        97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~-----v~  170 (825)
T KOG0267|consen   97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRW-----VA  170 (825)
T ss_pred             eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-CcceeEEEeecCCCce-----ee
Confidence            99999999999999999999999999999999999999999999998889888886 5567999999999998     78


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      .+++|..+++||...|+....+..|.+.+..+.|+|..-+++.|+.|+.+++||+++.+.+......  ...|.+.+|+|
T Consensus       171 ~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~  248 (825)
T KOG0267|consen  171 SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNP  248 (825)
T ss_pred             ccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecC
Confidence            8999999999999999999999999999999999999999999999999999999999888766433  46899999999


Q ss_pred             CCeEEEEEecCC
Q 019482          299 TQRVVLTASKEW  310 (340)
Q Consensus       299 ~~~~l~~~~~dg  310 (340)
                      ++..+++|..+.
T Consensus       249 ~~~~~~~G~q~s  260 (825)
T KOG0267|consen  249 DGKIVLSGEQIS  260 (825)
T ss_pred             CceeeecCchhh
Confidence            999988887663

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.6e-27  Score=181.99  Aligned_cols=269  Identities=13%  Similarity=0.149  Sum_probs=220.6

Q ss_pred             eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      .+...+.||.+.|..++.......+.+++.|.+.+||.++++.+...+.+       |.+.|++++|++.+.++++++.|
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-------H~GSVNsikfh~s~~L~lTaSGD  211 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-------HTGSVNSIKFHNSGLLLLTASGD  211 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-------cccceeeEEeccccceEEEccCC
Confidence            34567899999999999988888999999999999999999999877764       88999999999999999999999


Q ss_pred             CcEEEEeC------CC----------------------------------CceeeccccCccceeEEEecCCCCeEEEee
Q 019482          134 GHLRIMHW------PS----------------------------------LRIILDEPKAHKSVLDMDFSLDSEFLATTS  173 (340)
Q Consensus       134 g~i~~~d~------~~----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  173 (340)
                      ++..||..      ..                                  .-++..+.+|...|.+..|-..|+.+++++
T Consensus       212 ~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS  291 (481)
T KOG0300|consen  212 ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS  291 (481)
T ss_pred             cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee
Confidence            99999962      11                                  001234556777888899999999999999


Q ss_pred             CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-cEEeeeeccCCCeeEEEE
Q 019482          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSI  252 (340)
Q Consensus       174 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~  252 (340)
                      .|.+..+||+++++++..+.++ +...+.++-+|..+.     +++++.|.+.++||++.. ..+..+.+|...|+++.|
T Consensus       292 WDRTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQrL-----VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF  365 (481)
T KOG0300|consen  292 WDRTANLWDVETGEVVNILTGH-DSELTHCSTHPTQRL-----VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF  365 (481)
T ss_pred             ccccceeeeeccCceeccccCc-chhccccccCCcceE-----EEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence            9999999999999999988865 456888888998886     789999999999999853 356778999999999999


Q ss_pred             CCCCCEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCC-CCcccc
Q 019482          253 SLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK-GLSLPL  330 (340)
Q Consensus       253 s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~  330 (340)
                      ..+. .+++|+.|.+|++||++... ++..+..   .++++.++.+..+..|+.--++..|++||++...... +-...+
T Consensus       366 ~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq  441 (481)
T KOG0300|consen  366 NTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ  441 (481)
T ss_pred             ecCC-ceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence            8764 68899999999999998865 3443332   5689999999988889998888999999997544221 223456


Q ss_pred             ccccccccC
Q 019482          331 LHSHSQNSV  339 (340)
Q Consensus       331 ~h~~~v~~v  339 (340)
                      .|...|.+.
T Consensus       442 gHrRMV~c~  450 (481)
T KOG0300|consen  442 GHRRMVTCC  450 (481)
T ss_pred             ccceeeeee
Confidence            777766554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.7e-26  Score=176.14  Aligned_cols=285  Identities=13%  Similarity=0.175  Sum_probs=215.6

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      ..|+.|++   -+.++|.|..      +|.+-||+++        +......+.+|..+|.+++||++|+.|++++.|..
T Consensus        26 a~~~~Fs~---~G~~lAvGc~------nG~vvI~D~~--------T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   26 AECCQFSR---WGDYLAVGCA------NGRVVIYDFD--------TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS   88 (405)
T ss_pred             cceEEecc---Ccceeeeecc------CCcEEEEEcc--------ccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence            57999999   5568888885      4559999998        55556778899999999999999999999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCCCCceeeccccC-c----cceeEE
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKA-H----KSVLDM  160 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~----~~i~~~  160 (340)
                      |.+||+..+....++.        ..++|....|+|... ..++.-.+..-.+.++....... +... .    ....+.
T Consensus        89 i~lwDl~~gs~l~rir--------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d~d~dln~sas~~  159 (405)
T KOG1273|consen   89 IKLWDLLKGSPLKRIR--------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKDDDGDLNSSASHG  159 (405)
T ss_pred             eEEEeccCCCceeEEE--------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCCCccccccccccc
Confidence            9999999988665553        558999999999443 33333333334455554322111 1111 1    123344


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC------
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW------  234 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------  234 (340)
                      .|.+.|+++++|...|.+.++|..+-+++..++......|..+.++..|+.     ++..+.|..|+.|+++.-      
T Consensus       160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-----liiNtsDRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-----LIINTSDRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             cccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-----EEEecCCceEEEEehhhhcccCcc
Confidence            688999999999999999999999999998887655567999999999997     788899999999998631      


Q ss_pred             -cEE--eeeec--cCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482          235 -NKI--GHKRL--LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       235 -~~~--~~~~~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                       ++.  +.+..  .+.+-.+++||.+|.|++.++. -..++||....|..++.+. +..+.....+.|+|-...+++- .
T Consensus       235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp~rp~i~si-~  312 (405)
T KOG1273|consen  235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHPVRPIIASI-A  312 (405)
T ss_pred             CCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-CCchhheeecccccceeeeeec-c
Confidence             111  11110  1234467889999999998874 4579999999999998774 4435678899999998888877 7


Q ss_pred             CCcEEEEEecCCCCCC
Q 019482          309 EWGAMITKLTVPADWK  324 (340)
Q Consensus       309 dg~i~iw~~~~~~~~~  324 (340)
                      .|.++||....+..|.
T Consensus       313 sg~v~iw~~~~~enws  328 (405)
T KOG1273|consen  313 SGVVYIWAVVQVENWS  328 (405)
T ss_pred             CCceEEEEeecccchh
Confidence            7899999998776654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.8e-26  Score=182.53  Aligned_cols=232  Identities=14%  Similarity=0.170  Sum_probs=186.9

Q ss_pred             CeEEEEecC-CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482           76 DDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        76 ~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  154 (340)
                      .+++++... ..+.+|.+.........       .--.++|.+++-+|+|.+++.|+..|.|++|.+.+|..+..+..|-
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-------~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY  123 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQY-------IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY  123 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhh-------cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc
Confidence            566666543 47899998765443311       1144789999999999999999899999999999999999898888


Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEcc---------CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTE---------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      ..|+++.|+-||.+|++|+.||.|.+|++.         +-+++..+. +|.-+|+++...+.|....   +++++.|.+
T Consensus       124 Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~r---l~TaS~D~t  199 (476)
T KOG0646|consen  124 QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGGTNAR---LYTASEDRT  199 (476)
T ss_pred             cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCCccce---EEEecCCce
Confidence            999999999999999999999999999874         234555555 4556899999888764322   789999999


Q ss_pred             EEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE----------------eecccccccc-
Q 019482          226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI----------------NHWSKRLHLG-  288 (340)
Q Consensus       226 i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----------------~~~~~~~~~~-  288 (340)
                      +++||+..+..+..+.. ...+.+++.+|-++.+++|+++|.|.+.++.....                ... ..+|.+ 
T Consensus       200 ~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~-~~Gh~~~  277 (476)
T KOG0646|consen  200 IKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV-LVGHENE  277 (476)
T ss_pred             EEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeee-eccccCC
Confidence            99999999988766543 56899999999999999999999999988754321                111 234532 


Q ss_pred             cceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       289 ~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ..|++++.+-||.+|++|+.||.++||++...
T Consensus       278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSK  309 (476)
T ss_pred             cceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence            48999999999999999999999999998643

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=2.4e-27  Score=191.25  Aligned_cols=248  Identities=14%  Similarity=0.193  Sum_probs=202.4

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      .|..-|.++.++...+++++|+..+ |+|||+......  ........+.....++++.+.|||+.|++|++-.++.|||
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkgc-VKVWdis~pg~k--~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISQPGNK--SPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCCe-EEEeeccCCCCC--CccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence            4777788999999999999998755 999999754221  1111222333567899999999999999999999999999


Q ss_pred             CCCCceeec--cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          141 WPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       141 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      +.......+  +....-....++.+||.+..+++..||.|.|||+.+...+..+.++.+ .+.|+..+++|..     +-
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-GascIdis~dGtk-----lW  567 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISKDGTK-----LW  567 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-CceeEEecCCCce-----ee
Confidence            976544322  222223578899999999999999999999999999999999987665 5999999999998     89


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      +++-|++++.||+++++.+... .....|.++..+|++.++++|-+++.+-+......+..+.  ..| .+-|.++.|.+
T Consensus       568 TGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql--hlh-eScVLSlKFa~  643 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL--HLH-ESCVLSLKFAY  643 (705)
T ss_pred             cCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceee--ccc-ccEEEEEEecc
Confidence            9999999999999998876443 3456899999999999999999999998887766554443  345 67899999999


Q ss_pred             CCeEEEEEecCCcEEEEEecCCC
Q 019482          299 TQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .|+++++.+.|+.+..|......
T Consensus       644 cGkwfvStGkDnlLnawrtPyGa  666 (705)
T KOG0639|consen  644 CGKWFVSTGKDNLLNAWRTPYGA  666 (705)
T ss_pred             cCceeeecCchhhhhhccCcccc
Confidence            99999999999999999987654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=6.4e-26  Score=195.09  Aligned_cols=275  Identities=20%  Similarity=0.228  Sum_probs=215.2

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      .-.+.++|.|+.+   ++.+      .++++.|++|+-.....    .|..   +.-+...|.+++..  +.+|++++.+
T Consensus        14 ~G~t~i~~d~~ge---fi~t------cgsdg~ir~~~~~sd~e----~P~t---i~~~g~~v~~ia~~--s~~f~~~s~~   75 (933)
T KOG1274|consen   14 GGLTLICYDPDGE---FICT------CGSDGDIRKWKTNSDEE----EPET---IDISGELVSSIACY--SNHFLTGSEQ   75 (933)
T ss_pred             CceEEEEEcCCCC---EEEE------ecCCCceEEeecCCccc----CCch---hhccCceeEEEeec--ccceEEeecc
Confidence            3467899999654   4443      34677799998764421    1211   11266778888774  5599999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (340)
                      ++|.+|.+..++....+..       ..-++++++|+-+|++++.|+.|-.|++.++.+......+.+|..+|.++.|+|
T Consensus        76 ~tv~~y~fps~~~~~iL~R-------ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p  148 (933)
T KOG1274|consen   76 NTVLRYKFPSGEEDTILAR-------FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP  148 (933)
T ss_pred             ceEEEeeCCCCCccceeee-------eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence            9999999987764332221       346889999999999999999999999999999888889999999999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEccCCeeEEEeecC-------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE
Q 019482          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRN-------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  237 (340)
                      ++++||+.+-||.|++||++++.+...+..-       ....+..++|+|++..     ++....|+.|++|+...+...
T Consensus       149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-----la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-----LAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-----EEeeccCCeEEEEccCCceeh
Confidence            9999999999999999999998877665421       1345678999999776     677788999999999999877


Q ss_pred             eeeecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482          238 GHKRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       238 ~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  315 (340)
                      ..+...  ...+..+.|+|+|+|||+++.||.|.|||.++-+. +    .. ...|.+++|.|+.+.+-.....|...+|
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~----~~-~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H----EF-KRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----cc-cceeEEEecCCCCCeeEEEeeccccccC
Confidence            666543  34489999999999999999999999999998322 1    11 4589999999998766555555555444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=3e-25  Score=179.21  Aligned_cols=287  Identities=14%  Similarity=0.235  Sum_probs=213.6

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      .-|+|++|++.+....+++. +    .+.+..+.+|++......        ...+...+.|....|+|.+..++.....
T Consensus       155 ~GV~~vaFsk~~~G~~l~~v-D----~s~~h~lSVWdWqk~~~~--------~~vk~sne~v~~a~FHPtd~nliit~Gk  221 (626)
T KOG2106|consen  155 RGVTCVAFSKINGGSLLCAV-D----DSNPHMLSVWDWQKKAKL--------GPVKTSNEVVFLATFHPTDPNLIITCGK  221 (626)
T ss_pred             ccceeeeecccCCCceEEEe-c----CCCccccchhhchhhhcc--------CcceeccceEEEEEeccCCCcEEEEeCC
Confidence            45899999996654344442 2    346778999999743321        1233345678899999977766665666


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (340)
                      +.+.+|+++.+....+.-.-+.   .....|.|++|.++|+ +++|..+|.|.||+..+.+.......|.+.|.+++.-.
T Consensus       222 ~H~~Fw~~~~~~l~k~~~~fek---~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr  297 (626)
T KOG2106|consen  222 GHLYFWTLRGGSLVKRQGIFEK---REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR  297 (626)
T ss_pred             ceEEEEEccCCceEEEeecccc---ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence            7799999988776544322111   1337899999999995 67999999999999987777666668888999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEccCCe-----------eEEEe----------------------------ecCCCCceeeEEE
Q 019482          165 DSEFLATTSTDGSARIWKTEDGV-----------AWTFL----------------------------TRNSDEKIELCRF  205 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~-----------~~~~~----------------------------~~~~~~~v~~~~~  205 (340)
                      +|.+ ++|+.|..|..||-.-.+           .++++                            ...|......++.
T Consensus       298 ~Gtl-lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~  376 (626)
T KOG2106|consen  298 DGTL-LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT  376 (626)
T ss_pred             CccE-eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence            9874 559999999999832110           00110                            0112235667788


Q ss_pred             ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                      +|+..+     +++++.|+.+++|+  ..+++ --+....+..++.|+|.| .++.|+..|...+.|.++...+..-.. 
T Consensus       377 hps~~q-----~~T~gqdk~v~lW~--~~k~~-wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-  446 (626)
T KOG2106|consen  377 HPSKNQ-----LLTCGQDKHVRLWN--DHKLE-WTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-  446 (626)
T ss_pred             CCChhh-----eeeccCcceEEEcc--CCcee-EEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-
Confidence            888777     79999999999999  33333 233445688999999999 999999999999999999766654322 


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                        +.+++.++|+|+|.+||.|+.|+.|+||.+...+
T Consensus       447 --~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  447 --NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             --CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence              5799999999999999999999999999998655

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=191.38  Aligned_cols=293  Identities=14%  Similarity=0.128  Sum_probs=212.2

Q ss_pred             EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCE
Q 019482            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (340)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i   87 (340)
                      ++..|++.+....+|+.+.      .++.|.+++.......+  +.........|.+.|..+.|-|....|++++.|.++
T Consensus        53 f~~sFs~~~n~eHiLavad------E~G~i~l~dt~~~~fr~--ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVAD------EDGGIILFDTKSIVFRL--EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             ccccccCCCCccceEEEec------CCCceeeecchhhhcch--hhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence            6689999887778888777      55568888765333221  222224466799999999999966789999999999


Q ss_pred             EEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCce--------------------
Q 019482           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRI--------------------  146 (340)
Q Consensus        88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~--------------------  146 (340)
                      ++||++..+....-     ..+.|.+.|.+++|.| |...|++|+.||.|.|||++-...                    
T Consensus       125 r~Wdvk~s~l~G~~-----~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGR-----LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             eeeeeccceeecce-----eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence            99999988765442     1235899999999999 556899999999999999853220                    


Q ss_pred             -------eeccccCccceeE---EEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeec--------C--CCCceeeEEE
Q 019482          147 -------ILDEPKAHKSVLD---MDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTR--------N--SDEKIELCRF  205 (340)
Q Consensus       147 -------~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~--------~--~~~~v~~~~~  205 (340)
                             +..-..+...|.+   +.+..|...||+++. |+.|++||++..........        +  ....+.++..
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l  279 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL  279 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence                   0011112223444   555667888998887 99999999997655433211        1  0123566777


Q ss_pred             ccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCC--CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      ...|.+     +++.+.|+.|++|++.+-.  ++..+.++..  -...-..+||+.++++|+.|...++|.+.+.+....
T Consensus       280 DssGt~-----L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  280 DSSGTY-----LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             cCCCCe-----EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh
Confidence            777787     5666669999999998643  3333333221  112234689999999999999999999999887777


Q ss_pred             ccccccccceeeEEEecCC-eEEEEEecCCcEEEEEecC
Q 019482          282 SKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       282 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~~~~  319 (340)
                      +..+| ...|+.++|.|.. .-++++++|..++||++..
T Consensus       355 ~l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  355 LLLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             hhhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence            77788 6799999998843 4578889999999999953

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=5.8e-25  Score=187.39  Aligned_cols=286  Identities=20%  Similarity=0.215  Sum_probs=217.6

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      |+++.--+.  ..+=++.|.      ..+.+.+|++.        +....++++++...|+++.-+|-=+.+|.|..+|+
T Consensus       162 Ital~HP~T--YLNKIvvGs------~~G~lql~Nvr--------t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~  225 (910)
T KOG1539|consen  162 ITALLHPST--YLNKIVVGS------SQGRLQLWNVR--------TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGT  225 (910)
T ss_pred             eeeEecchh--heeeEEEee------cCCcEEEEEec--------cCcEEEEecccccceeEeccCCcceEEEEeccCce
Confidence            555543332  234455555      55569999998        77788999999999999999999999999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCe-EEEccCCCcEEEEeCCCCceeecccc-CccceeEEEecC
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSL  164 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~  164 (340)
                      |.+++++.++....+..       ..+.|+.++|..||+. +++|+..|.+.+||++..+.+..... |.+.+....|.|
T Consensus       226 ViifNlK~dkil~sFk~-------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~  298 (910)
T KOG1539|consen  226 VIIFNLKFDKILMSFKQ-------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP  298 (910)
T ss_pred             EEEEEcccCcEEEEEEc-------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence            99999999988776642       2489999999999984 56666779999999998776666653 336777777877


Q ss_pred             CCCeEEEeeCCCeEEEEEccCCee-----------------EE-------------------------------------
Q 019482          165 DSEFLATTSTDGSARIWKTEDGVA-----------------WT-------------------------------------  190 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~~-----------------~~-------------------------------------  190 (340)
                      ....+++++.|+++++|=.+++.-                 +.                                     
T Consensus       299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~  378 (910)
T KOG1539|consen  299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN  378 (910)
T ss_pred             CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence            777778877777777763331000                 00                                     


Q ss_pred             ---------------------E--------------------------------------eecC----CCCceeeEEEcc
Q 019482          191 ---------------------F--------------------------------------LTRN----SDEKIELCRFSK  207 (340)
Q Consensus       191 ---------------------~--------------------------------------~~~~----~~~~v~~~~~~~  207 (340)
                                           .                                      +...    ....+++++.++
T Consensus       379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~  458 (910)
T KOG1539|consen  379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF  458 (910)
T ss_pred             ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence                                 0                                      0000    112355666666


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc--
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS--  282 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--  282 (340)
                      -|+.     .+.|...|.|.+|++.+|-....+   ..|+.+|+.++...-++.+++++.+|.+++||.++...+..+  
T Consensus       459 CGNF-----~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l  533 (910)
T KOG1539|consen  459 CGNF-----VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL  533 (910)
T ss_pred             cCce-----EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc
Confidence            6665     677788999999999999877777   588999999999999999999999999999998875532211  


Q ss_pred             --------------------------------------cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          283 --------------------------------------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       283 --------------------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                                                            ..+| ++.|++++|||||++|++++.|++|++||+....
T Consensus       534 ~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  534 GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence                                                  1245 6799999999999999999999999999997644

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.95  E-value=1.1e-25  Score=170.16  Aligned_cols=290  Identities=15%  Similarity=0.174  Sum_probs=217.0

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc----cCCee---eEEEecCCCCeeEEEEcC-C
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----TSPLV---TYVFDESEGDPMTIAVNP-S   74 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~---~~~~~~h~~~v~~~~~~~-~   74 (340)
                      +++.|.++.-.+.  .++++++|+      .++.|.+|++......-.    ....+   ..--.+|.-.|..+.|-| |
T Consensus        42 HgGsvNsL~id~t--egrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   42 HGGSVNSLQIDLT--EGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             CCCccceeeeccc--cceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence            4566777777664  346777666      566699999975442111    11111   111246777899999999 5


Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~  151 (340)
                      .-.+.+++-|.++++||..+.+....+.        .++.|+.-+++|-   ..++|+|..+-.|++-|+.+|.....+.
T Consensus       114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~--------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls  185 (397)
T KOG4283|consen  114 TGMFTSSSFDHTLKVWDTNTLQEAVDFK--------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS  185 (397)
T ss_pred             CceeecccccceEEEeecccceeeEEee--------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence            5588899999999999999877655543        4477888889882   4478889999999999999999999999


Q ss_pred             cCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCC-eeEEEee-------------cCCCCceeeEEEccCCCcceEEE
Q 019482          152 KAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDG-VAWTFLT-------------RNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~-~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      +|.+.|.++.|+|...+ |++|+.||.|++||++.. .+...+.             ..+.+.+..++|+.++.+     
T Consensus       186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~-----  260 (397)
T KOG4283|consen  186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY-----  260 (397)
T ss_pred             cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh-----
Confidence            99999999999997765 789999999999999864 3333322             234567999999999998     


Q ss_pred             EEecCCcceEEEEECCCCcEEeeee---ccCC----CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccc
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKR---LLRK----PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~----~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  289 (340)
                      +++.+.|..+++|+..+|+....-.   .+..    .+. +. +-+...++.--.++.+.++++-.++.++.+ ..| ..
T Consensus       261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l-~~h-~k  336 (397)
T KOG4283|consen  261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRL-STH-LK  336 (397)
T ss_pred             hhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEee-ecc-cc
Confidence            7889999999999998876321111   1111    111 22 334445555556688999999999988877 456 67


Q ss_pred             ceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          290 SIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      .+.+.++-|+-+...++..|+.+..|..
T Consensus       337 ~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  337 RINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             eeeEEeecCchhhhhccccCCccccccc
Confidence            8999999999999999999999999987

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.95  E-value=8.9e-27  Score=187.73  Aligned_cols=287  Identities=15%  Similarity=0.165  Sum_probs=218.2

Q ss_pred             CCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC
Q 019482           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (340)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (340)
                      ...+++|++........      +.-....-.+.++.|+.... .+++.+.|..+++|.-.............     ..
T Consensus        11 gd~~kl~D~s~~~~~~~------~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~-----~g   79 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSE------YVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKL-----TG   79 (673)
T ss_pred             CCceEEeecccccCccc------cccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecc-----cc
Confidence            34589999874433221      10011122388999986654 23344567788899765442211111111     11


Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  192 (340)
                      ..-.|++......|+++|+..+.|+|||++...+...+..|...|+++.++-...+||+++..|.|.|..+.++.....+
T Consensus        80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f  159 (673)
T KOG4378|consen   80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF  159 (673)
T ss_pred             chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce
Confidence            23455555555689999999999999999976677777788889999999999999999999999999999999888888


Q ss_pred             ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCC-CCEEEEeeCCCcEEE
Q 019482          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLD-GKYLAMGSKDGDICV  270 (340)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i  270 (340)
                      .......+.-+.|+|..+.+    +.+++++|.|.+||+....++.. ...|..+...++|+|. ..+|++.+.|.+|.+
T Consensus       160 ~~~sgqsvRll~ys~skr~l----L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~  235 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFL----LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINI  235 (673)
T ss_pred             ecCCCCeEEEeeccccccee----eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEE
Confidence            76656677899999998764    68889999999999998776644 4578889999999994 577888999999999


Q ss_pred             EeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       271 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                      ||....+....+..   ..|...++|+++|.+|+.|+..|.+..||+.....  ++...-.|...|.+||
T Consensus       236 yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~--Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  236 YDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA--PVAVRSAHDASVTRVA  300 (673)
T ss_pred             eecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCC--CceEeeecccceeEEE
Confidence            99998776655544   34899999999999999999999999999986553  6777888888887764

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4.2e-25  Score=184.16  Aligned_cols=266  Identities=13%  Similarity=0.157  Sum_probs=216.2

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      --..+|.++||+.+.+.||.+-.+|.|.+|++..+-........     +....|.+++|++. ..|++.+.+|.|.-||
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-----~~drsIE~L~W~e~-~RLFS~g~sg~i~EwD   96 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-----PEDRSIESLAWAEG-GRLFSSGLSGSITEWD   96 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec-----CCCCceeeEEEccC-CeEEeecCCceEEEEe
Confidence            34678999999999999999999999999999886555444432     25578999999954 4677888899999999


Q ss_pred             CCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEEe
Q 019482          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      +.+++.........+.|.+++.+|.+..++.|+.||.+..++...++...... ....+.+.+++|+|++..     ++.
T Consensus        97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-----i~~  171 (691)
T KOG2048|consen   97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-----IAG  171 (691)
T ss_pred             cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-----EEe
Confidence            99999988887777899999999999999999999988888887776654433 233478999999999998     899


Q ss_pred             cCCcceEEEEECCCCcEEeeee-----cc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482          220 RGDKALLAVYDISTWNKIGHKR-----LL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~-----~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i  291 (340)
                      |+.||.|++||..+++.+....     ..   ..-|+++.+-.+ ..|++|..-|.|.+||...+..++... .| ...|
T Consensus       172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h-~adV  248 (691)
T KOG2048|consen  172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHS-CH-DADV  248 (691)
T ss_pred             cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhh-hh-hcce
Confidence            9999999999999998765211     11   123566666544 478999999999999999999887763 55 5789


Q ss_pred             eeEEEecCCeEEEEEecCCcEEEEEecCCCC-CCCCccccccccccccCC
Q 019482          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPAD-WKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~h~~~v~~vs  340 (340)
                      .+++..+++.+++++|.|+.+..+....... |........|.+.|.+++
T Consensus       249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~a  298 (691)
T KOG2048|consen  249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMA  298 (691)
T ss_pred             eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeee
Confidence            9999999999999999999999998876543 555667778888887764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.8e-27  Score=208.02  Aligned_cols=303  Identities=18%  Similarity=0.209  Sum_probs=228.3

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCC----cccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCe---
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD---   77 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---   77 (340)
                      .+--.++|+|+..  .+++.|...+    +-+.+..++||.++.........+.  -.+. -....+.++|.+.|..   
T Consensus         7 ~Rta~~awSp~~~--~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--~s~~-s~~rF~kL~W~~~g~~~~G   81 (1049)
T KOG0307|consen    7 SRTATFAWSPASP--PLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--GSLQ-SSNRFNKLAWGSYGSHSHG   81 (1049)
T ss_pred             cccceEEecCCCc--hhhHHHhhhhccccccccccccceeeecccCcccccccc--cccc-ccccceeeeecccCCCccc
Confidence            3445689999753  4666666544    2356788999998855544311111  1111 2456889999997775   


Q ss_pred             -EEEEecCCCEEEEEecCc--eeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccc--
Q 019482           78 -FVCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP--  151 (340)
Q Consensus        78 -l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~--  151 (340)
                       ||.|..||.|.+||...-  ......+.   ..-.|.+.|..+.|++. +++|++|+.||.|.|||+...+......  
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la---~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~  158 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLA---TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ  158 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHh---hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC
Confidence             888999999999998763  11111111   11248999999999995 4599999999999999998766554432  


Q ss_pred             cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC-CceeeEEEccCCCcceEEEEEecCC---cceE
Q 019482          152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGD---KALL  226 (340)
Q Consensus       152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~---d~~i  226 (340)
                      ...+.|.+++|+. ....|++++.+|.+.|||++..+++..+..... ..+..++|+|++...    ++++++   .-.|
T Consensus       159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq----l~~As~dd~~Pvi  234 (1049)
T KOG0307|consen  159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ----LLVASGDDSAPVI  234 (1049)
T ss_pred             CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee----eeeecCCCCCcee
Confidence            2345899999998 566799999999999999999888877764433 347899999998654    333333   3579


Q ss_pred             EEEECCCCc-EEeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe-EE
Q 019482          227 AVYDISTWN-KIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VV  303 (340)
Q Consensus       227 ~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l  303 (340)
                      .+||+|... +++.+..|...|.++.|++.+ +++++++.|+.|.+|+.++++.+..+.. . ++.+..+.|.|... .+
T Consensus       235 qlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~-~nW~fdv~w~pr~P~~~  312 (1049)
T KOG0307|consen  235 QLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-Q-GNWCFDVQWCPRNPSVM  312 (1049)
T ss_pred             EeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-C-CcceeeeeecCCCcchh
Confidence            999998654 667788999999999999955 8999999999999999999999988754 2 57899999999775 88


Q ss_pred             EEEecCCcEEEEEecCCC
Q 019482          304 LTASKEWGAMITKLTVPA  321 (340)
Q Consensus       304 ~~~~~dg~i~iw~~~~~~  321 (340)
                      +.++-||.|.|+.+....
T Consensus       313 A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  313 AAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hhheeccceeeeeeecCC
Confidence            999999999999997554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.95  E-value=2.7e-25  Score=167.69  Aligned_cols=296  Identities=11%  Similarity=0.134  Sum_probs=215.6

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-----
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-----   76 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----   76 (340)
                      +...+++++.|+..+.....+|.|+-..-  ..|+|.|..++....++.....     ..|.-+++.+.|.|+..     
T Consensus        42 ~ap~~lya~~Ws~~~~~~~rla~gS~~Ee--~~Nkvqiv~ld~~s~e~~~~a~-----fd~~YP~tK~~wiPd~~g~~pd  114 (364)
T KOG0290|consen   42 NAPWPLYAMNWSVRPDKKFRLAVGSFIEE--YNNKVQIVQLDEDSGELVEDAN-----FDHPYPVTKLMWIPDSKGVYPD  114 (364)
T ss_pred             cCCCceeeeccccCCCcceeEEEeeeccc--cCCeeEEEEEccCCCceeccCC-----CCCCCCccceEecCCccccCcc
Confidence            34678999999987766778888886554  6799999999866655543322     35888999999999763     


Q ss_pred             eEEEEecCCCEEEEEecCceee--eeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCc---eeecc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATD--INLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR---IILDE  150 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~---~~~~~  150 (340)
                      +||+ +.|. +++|.+...+..  ...........++..++++..|+. +.++|.+.+-|.+..|||++++.   ....+
T Consensus       115 lLAT-s~D~-LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL  192 (364)
T KOG0290|consen  115 LLAT-SSDF-LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL  192 (364)
T ss_pred             hhhc-ccCe-EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence            4554 4444 999999743221  111111112334678999999988 78899999999999999999863   35567


Q ss_pred             ccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEee-cCC-CCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          151 PKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-RNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       151 ~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                      ..|.++|..++|...+ +.|++.+.||+||+||++..+--..+. ... ..+...++|++..... +  .....+...|.
T Consensus       193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny-m--ATf~~dS~~V~  269 (364)
T KOG0290|consen  193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY-M--ATFAMDSNKVV  269 (364)
T ss_pred             EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH-H--hhhhcCCceEE
Confidence            7888999999999855 479999999999999998754433332 122 4577888998876652 2  23334567799


Q ss_pred             EEECCCC-cEEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceE---eecccccccccceeeEEEec-CCe
Q 019482          228 VYDISTW-NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEI---NHWSKRLHLGTSIALVEFCP-TQR  301 (340)
Q Consensus       228 i~d~~~~-~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~  301 (340)
                      +.|+|.. .++..++.|.+.|+.++|.|. ...|++++.|..+.+||+...-.   ...+.....+..|+.+.|++ ...
T Consensus       270 iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  270 ILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD  349 (364)
T ss_pred             EEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC
Confidence            9999975 477889999999999999995 57899999999999999976322   00111111256899999996 457


Q ss_pred             EEEEEecC
Q 019482          302 VVLTASKE  309 (340)
Q Consensus       302 ~l~~~~~d  309 (340)
                      +++.+...
T Consensus       350 wiai~~~k  357 (364)
T KOG0290|consen  350 WIAICFGK  357 (364)
T ss_pred             EEEEEecC
Confidence            78777654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-25  Score=177.99  Aligned_cols=288  Identities=12%  Similarity=0.139  Sum_probs=206.3

Q ss_pred             cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-------CCCeEEEEecCCCEEEEEe
Q 019482           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-------SGDDFVCSTTNGGCKLFEV   92 (340)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~l~~~~~d~~i~iw~~   92 (340)
                      ++++++..   -.....+.+|-++.....+.-  ...+.+   .....|++|..       .|+++|.|+.|..|.|||+
T Consensus       138 nlIl~ar~---eddvs~LEvYVyn~~e~nlYv--HHD~il---pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDL  209 (463)
T KOG0270|consen  138 NLILCARN---EDDVSYLEVYVYNEEEENLYV--HHDFIL---PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDL  209 (463)
T ss_pred             cEEEEeec---cCCceEEEEEEEcCCCcceeE--ecceec---cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEecc
Confidence            45554443   224456888888755422210  000011   13356777743       3579999999999999998


Q ss_pred             cCceeeeee--cc------------ccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccccCccce
Q 019482           93 YGGATDINL--LA------------KKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (340)
Q Consensus        93 ~~~~~~~~~--~~------------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i  157 (340)
                      +-.......  +.            +......|...|..++|+.. .+.||+|+.|.+|++||+.++++...+..|.+.|
T Consensus       210 DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V  289 (463)
T KOG0270|consen  210 DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKV  289 (463)
T ss_pred             ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCce
Confidence            643211110  00            11112247788889999885 4589999999999999999999998888778899


Q ss_pred             eEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-
Q 019482          158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-  234 (340)
Q Consensus       158 ~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-  234 (340)
                      .+++|+| ....|++|+.|++|.+.|.|..... ..++  ..+.|..++|.|.....    ++.+..||.++-+|+|+. 
T Consensus       290 q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~----f~~~tddG~v~~~D~R~~~  363 (463)
T KOG0270|consen  290 QTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENS----FFVSTDDGTVYYFDIRNPG  363 (463)
T ss_pred             eEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCcee----EEEecCCceEEeeecCCCC
Confidence            9999999 6778999999999999999953222 2222  34679999999988764    577789999999999986 


Q ss_pred             cEEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC-eEEEEEecCCcE
Q 019482          235 NKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGA  312 (340)
Q Consensus       235 ~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i  312 (340)
                      +++..+..|..+|.++++++. ..++++++.|+.|++|++..............-+...+.++.|+- -+++.|+..+.+
T Consensus       364 ~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~  443 (463)
T KOG0270|consen  364 KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVL  443 (463)
T ss_pred             CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceE
Confidence            789999999999999999885 467889999999999999765443222111112346677777865 457778778889


Q ss_pred             EEEEecCCC
Q 019482          313 MITKLTVPA  321 (340)
Q Consensus       313 ~iw~~~~~~  321 (340)
                      +||++....
T Consensus       444 ~vwd~~~~~  452 (463)
T KOG0270|consen  444 RVWDIFTNS  452 (463)
T ss_pred             EEeecccCh
Confidence            999997544

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.1e-25  Score=188.22  Aligned_cols=244  Identities=14%  Similarity=0.143  Sum_probs=202.1

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEE-EEEec-CCCeEEEc
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSV-DGSRFAAG  130 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~  130 (340)
                      ..+.+++.+|...|..++..+ +..++++++||++++|+-...+......     ...+.+-|.+ ++|-+ ++-.+++|
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~-----~~~~~g~i~~~i~y~e~~~~~l~~g   77 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHA-----FEGPKGFIANSICYAESDKGRLVVG   77 (745)
T ss_pred             ceeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCccccccee-----cccCcceeeccceeccccCcceEee
Confidence            345678999999999999874 4479999999999999986655433111     1124555555 77765 45569999


Q ss_pred             cCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      +.|++|.+|.+.+..+...+.+|...|.++....++. +++||.|.++++|-.  +++...+. .|...|+++..-|++.
T Consensus        78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~e~~  153 (745)
T KOG0301|consen   78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLPENT  153 (745)
T ss_pred             cccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccC-CcchheeeeeecCCCc
Confidence            9999999999999999999999999999999887776 999999999999976  45555666 4557899999999996


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  290 (340)
                            +++++.|..|++|.-  ++.++.+.+|...|+.+++-|++ .+++++.||.|++|++ +++.+... .+| ...
T Consensus       154 ------~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~-~gh-tn~  221 (745)
T KOG0301|consen  154 ------YVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM-HGH-TNF  221 (745)
T ss_pred             ------EEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee-ecc-ceE
Confidence                  699999999999987  66778899999999999998875 5678889999999999 66666655 467 679


Q ss_pred             eeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          291 IALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +.+++..+++..++++++|++++||+..
T Consensus       222 vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  222 VYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             EEEEEecCCCCeEEEecCCceEEEeecC
Confidence            9999988888999999999999999976

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=5.2e-24  Score=176.10  Aligned_cols=260  Identities=15%  Similarity=0.138  Sum_probs=183.8

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE-ec
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT   83 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~   83 (340)
                      ..+.+++|+|+..  .+++.++      .++.+.+|+...        ......+..+. .+..++|+|+++.++++ ..
T Consensus        31 ~~~~~l~~~~dg~--~l~~~~~------~~~~v~~~d~~~--------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~   93 (300)
T TIGR03866        31 QRPRGITLSKDGK--LLYVCAS------DSDTIQVIDLAT--------GEVIGTLPSGP-DPELFALHPNGKILYIANED   93 (300)
T ss_pred             CCCCceEECCCCC--EEEEEEC------CCCeEEEEECCC--------CcEEEeccCCC-CccEEEECCCCCEEEEEcCC
Confidence            3466788988533  3434433      456699998762        22222333333 35678999999977655 56


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-cEEEEeCCCCceeeccccCccceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      ++.+++||+.+.+....+.        ....+.+++|+|++++++++..++ .+.+||.++++....... ......+.|
T Consensus        94 ~~~l~~~d~~~~~~~~~~~--------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~  164 (300)
T TIGR03866        94 DNLVTVIDIETRKVLAEIP--------VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEF  164 (300)
T ss_pred             CCeEEEEECCCCeEEeEee--------CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEE
Confidence            7899999998766544332        223467899999999999888765 467789887766543322 234578999


Q ss_pred             cCCCCeEEEe-eCCCeEEEEEccCCeeEEEeecCC------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          163 SLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNS------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       163 ~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      +|++++++++ ..++.|++||+++++.+..+....      ......++|+|+++..    +++.+.++.+.+||.++++
T Consensus       165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~----~~~~~~~~~i~v~d~~~~~  240 (300)
T TIGR03866       165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA----FVALGPANRVAVVDAKTYE  240 (300)
T ss_pred             CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEE----EEEcCCCCeEEEEECCCCc
Confidence            9999987544 468999999999988776654221      1123568899999963    2334556789999999888


Q ss_pred             EEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          236 KIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      .+.... +...+.+++|+|+|++|+++ ..+|.|++||+.+++.+..+..   +...++++++|
T Consensus       241 ~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~  300 (300)
T TIGR03866       241 VLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV---GRLPWGVVVRP  300 (300)
T ss_pred             EEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc---ccccceeEeCC
Confidence            765443 34578899999999999886 4589999999999998877753   34568888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.3e-25  Score=177.88  Aligned_cols=262  Identities=17%  Similarity=0.223  Sum_probs=200.7

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHW  141 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~  141 (340)
                      .+.|+++.|+|.-..+++++.|+.++||.++..... .+..-..    ...+|.+..|.|+|+ .+++++....++.||+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeec
Confidence            367999999999999999999999999999765432 1111111    346899999999999 8999999999999999


Q ss_pred             CCCceeec--cccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          142 PSLRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       142 ~~~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      .+.+....  ..++. ..+.....+|++++|+..+..|.|.+....+++.+..++  ..+.+..+.|+.+++.     ++
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~-----l~  360 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKE-----LL  360 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcE-----EE
Confidence            88764322  22222 257888999999999999999999999999999999887  3467999999999987     77


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCC-CeeEEEECCCCCEEEEeeCCCcEEEEeccC------ceEeecccccccccce
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVKK------MEINHWSKRLHLGTSI  291 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~~~i  291 (340)
                      .++.+|.|.+||++...++..+...++ .-++++.++++.|||+|+..|.|.|||.++      .+++..+.  .....|
T Consensus       361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--NLtt~I  438 (514)
T KOG2055|consen  361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--NLTTAI  438 (514)
T ss_pred             EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh--hhheee
Confidence            788899999999999988777665432 346778889999999999999999999764      23333332  224689


Q ss_pred             eeEEEecCCeEEEEEec--CCcEEEEEecCCCCCCCCcccccccccccc
Q 019482          292 ALVEFCPTQRVVLTASK--EWGAMITKLTVPADWKGLSLPLLHSHSQNS  338 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~  338 (340)
                      ++++|+||.+.||.+|.  ...+++-.++.-.-++.++.....-+.|++
T Consensus       439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc  487 (514)
T KOG2055|consen  439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTC  487 (514)
T ss_pred             eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEE
Confidence            99999999999988886  456777666544434444433333333443

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1.7e-25  Score=169.20  Aligned_cols=206  Identities=15%  Similarity=0.197  Sum_probs=169.3

Q ss_pred             CCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCc------------ee---eccccCccceeEEEecC-CCCeEEEee
Q 019482          111 DAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLR------------II---LDEPKAHKSVLDMDFSL-DSEFLATTS  173 (340)
Q Consensus       111 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~------------~~---~~~~~~~~~i~~~~~~~-~~~~l~~~~  173 (340)
                      |.+.|..+...+ .|+|+++|+.||.|.+||++...            ++   .....|.-.|..+.|-| |..++.+++
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            778899999988 79999999999999999997533            11   01122334799999999 777899999


Q ss_pred             CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEEC
Q 019482          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (340)
Q Consensus       174 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  253 (340)
                      .|.++++||..+-+....+.  .++.|++-+++|-.....|  ++++..+-+|++-|+.+|..-..+.+|...|.++.|+
T Consensus       122 FDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcL--iA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  122 FDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCL--IAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             ccceEEEeecccceeeEEee--cCceeehhhcChhhhcceE--EEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            99999999999988888876  4567999999997653333  6888899999999999999999999999999999999


Q ss_pred             CCCCE-EEEeeCCCcEEEEeccCc-eEee-----------c--ccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          254 LDGKY-LAMGSKDGDICVVDVKKM-EINH-----------W--SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       254 ~~~~~-l~~~~~dg~i~i~d~~~~-~~~~-----------~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      |...+ |++|+.||.|++||++.. .+..           .  ....| .+.+++++|+.|+.++++++.|..+++|+..
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecccchhhhhccCccceEEeecc
Confidence            97765 678999999999999753 1111           1  12334 5789999999999999999999999999997


Q ss_pred             CCC
Q 019482          319 VPA  321 (340)
Q Consensus       319 ~~~  321 (340)
                      ...
T Consensus       277 ~G~  279 (397)
T KOG4283|consen  277 SGR  279 (397)
T ss_pred             cCc
Confidence            654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=4.9e-27  Score=197.03  Aligned_cols=214  Identities=15%  Similarity=0.210  Sum_probs=188.8

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      |.+..+.+|...        .+.....|.+|+.+|.++.|+++..+|++|+.+|+|++||++.......+.+       |
T Consensus        47 g~~~k~~L~~i~--------kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-------h  111 (825)
T KOG0267|consen   47 GEDEKVNLWAIG--------KPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-------H  111 (825)
T ss_pred             CCceeecccccc--------CCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-------c
Confidence            356668888776        4444456899999999999999999999999999999999998776665543       7


Q ss_pred             CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE
Q 019482          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  191 (340)
                      ...+..+.|+|-+.+.+.|+.|+.+++||++...+...+.+|...+..+.|+|+|++++.++.|.+++|||...|+....
T Consensus       112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~e  191 (825)
T KOG0267|consen  112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKE  191 (825)
T ss_pred             ccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccc
Confidence            78999999999999999999999999999998888888888888899999999999999999999999999999999988


Q ss_pred             eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC
Q 019482          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (340)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  266 (340)
                      +.. +.+.+.++.|+|..-.     +..++.|+++++||+++.+.+.........|.+..|+|+++.+++|....
T Consensus       192 f~~-~e~~v~sle~hp~e~L-----la~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  192 FKS-HEGKVQSLEFHPLEVL-----LAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccc-ccccccccccCchhhh-----hccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            874 4578999999998765     78999999999999999888888777788999999999999999886653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=2.6e-25  Score=179.39  Aligned_cols=267  Identities=18%  Similarity=0.232  Sum_probs=206.2

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      ++++.|+..+.    ++..+    .+.+..+.+|.-+......   |... .+.+  +.-.|++......|+++|+..+.
T Consensus        37 ~~s~~w~~~n~----lvvas----~~gdk~~~~~~K~g~~~~V---p~~~-k~~g--d~~~Cv~~~s~S~y~~sgG~~~~  102 (673)
T KOG4378|consen   37 DFSFNWQRRNF----LVVAS----MAGDKVMRIKEKDGKTPEV---PRVR-KLTG--DNAFCVACASQSLYEISGGQSGC  102 (673)
T ss_pred             ceeeeccccce----EEEee----cCCceeEEEecccCCCCcc---ceee-cccc--chHHHHhhhhcceeeeccCcCce
Confidence            88999998432    33333    3356678888765442222   2211 1222  23445555555689999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-ceeEEEecCC
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLD  165 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~  165 (340)
                      |+|||++...+...+.       .|...|+++.++....|||+++..|.|.+..+.++.....+....+ .+.-+.++|.
T Consensus       103 Vkiwdl~~kl~hr~lk-------dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s  175 (673)
T KOG4378|consen  103 VKIWDLRAKLIHRFLK-------DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS  175 (673)
T ss_pred             eeehhhHHHHHhhhcc-------CCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc
Confidence            9999998544333322       3789999999999999999999999999999998887766654433 5778999997


Q ss_pred             CCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC
Q 019482          166 SEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (340)
Q Consensus       166 ~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (340)
                      .+. |.+++.+|.|.+||+....++..+...|..+...++|+|....+    +++.+.|..|.+||.+..+....+. ..
T Consensus       176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l----~vsVG~Dkki~~yD~~s~~s~~~l~-y~  250 (673)
T KOG4378|consen  176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL----LVSVGYDKKINIYDIRSQASTDRLT-YS  250 (673)
T ss_pred             cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce----EEEecccceEEEeecccccccceee-ec
Confidence            664 66788999999999999889888888888999999999998864    6888999999999999766544433 35


Q ss_pred             CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482          245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       245 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      .+...++|+++|.+|+.|+..|.|..||++..+........| ...|++++|-|.-
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s~  305 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPSP  305 (673)
T ss_pred             CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeecc
Confidence            689999999999999999999999999999877665666777 5789999998864

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=6.6e-25  Score=171.15  Aligned_cols=256  Identities=14%  Similarity=0.174  Sum_probs=187.3

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCC--eEEEEecCCCEEEEEecCcee-------eeee-cccc-CCCCCCCCCeEEEEE
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGAT-------DINL-LAKK-MPPLQDAGPQKCLSF  120 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~~-------~~~~-~~~~-~~~~~~~~~v~~~~~  120 (340)
                      .|......-.|.+.++.+.-++-++  +.++=+..|.|+||++...-.       .... ...+ .....|...=+.+.|
T Consensus       140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdW  219 (440)
T KOG0302|consen  140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDW  219 (440)
T ss_pred             cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeec
Confidence            3556666677889999998888654  555667789999999854211       0000 0000 111236677789999


Q ss_pred             ecC-CCeEEEccCCCcEEEEeCCCCcee---eccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE-EEeec
Q 019482          121 SVD-GSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLTR  194 (340)
Q Consensus       121 ~~~-~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~  194 (340)
                      ||- --.|++|..-+.|++|...++.-.   .-+.+|...|..++|+| ....|++||.||+|+|||+|.+... ..+..
T Consensus       220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k  299 (440)
T KOG0302|consen  220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK  299 (440)
T ss_pred             ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee
Confidence            992 225888888899999998876533   23556888999999999 5568999999999999999987322 22224


Q ss_pred             CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC---CcEEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEE
Q 019482          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICV  270 (340)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i  270 (340)
                      .|...|+-+.|+..-..     ++++++||+++|||+|+   ++++..++.|..+|+++.|+|. ...|++++.|.+|.|
T Consensus       300 Ah~sDVNVISWnr~~~l-----LasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti  374 (440)
T KOG0302|consen  300 AHNSDVNVISWNRREPL-----LASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI  374 (440)
T ss_pred             ccCCceeeEEccCCcce-----eeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence            56678999999988774     89999999999999986   4578899999999999999994 567888899999999


Q ss_pred             EeccCceE---------------eecccccc-cccceeeEEEecCC-eEEEEEecCCcE
Q 019482          271 VDVKKMEI---------------NHWSKRLH-LGTSIALVEFCPTQ-RVVLTASKEWGA  312 (340)
Q Consensus       271 ~d~~~~~~---------------~~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i  312 (340)
                      ||+....-               ...+...| .+..+..+.|++.- .+|++.+.||--
T Consensus       375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn  433 (440)
T KOG0302|consen  375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN  433 (440)
T ss_pred             EEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence            99853111               11122233 23578899999865 477888888743

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.94  E-value=9.5e-25  Score=167.42  Aligned_cols=292  Identities=13%  Similarity=0.140  Sum_probs=208.1

Q ss_pred             CCCceeEEeeeee--cCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC----C
Q 019482            2 EGGGTVTCGSWIK--RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----G   75 (340)
Q Consensus         2 ~~~~~v~~~~w~~--~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~   75 (340)
                      .++-+|+.++|++  .-++.+++|+.|       .+.+.+|+...+....   ......-..|+.....++|+-+    .
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG-------~~rvtiy~c~~d~~ir---~lq~y~D~d~~Esfytcsw~yd~~~~~  105 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVG-------GNRVTIYECPGDGGIR---LLQSYADEDHDESFYTCSWSYDSNTGN  105 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeC-------CcEEEEEEECCcccee---eeeeccCCCCCcceEEEEEEecCCCCC
Confidence            4567899999996  222335555444       3458888887655211   1111222247778888998753    3


Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeecc---c
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE---P  151 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~---~  151 (340)
                      .++|+++.-|.|+|.|+.+++....+..       |...|..+.+.|+ .+++++++.|..|++|++++..++..+   .
T Consensus       106 p~la~~G~~GvIrVid~~~~~~~~~~~g-------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e  178 (385)
T KOG1034|consen  106 PFLAAGGYLGVIRVIDVVSGQCSKNYRG-------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE  178 (385)
T ss_pred             eeEEeecceeEEEEEecchhhhccceec-------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence            4889999999999999998887766654       8899999999995 578999999999999999999887654   4


Q ss_pred             cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe---------------------------ecCCCCceeeEE
Q 019482          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---------------------------TRNSDEKIELCR  204 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---------------------------~~~~~~~v~~~~  204 (340)
                      +|.+.|.++.|+++|.+|++++.|.++++|++...+....+                           ...|...|.|+.
T Consensus       179 gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr  258 (385)
T KOG1034|consen  179 GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR  258 (385)
T ss_pred             cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence            57779999999999999999999999999999743211111                           011223344444


Q ss_pred             EccCCCcceEEEEEecCCcceEEEEECCC-Cc-------------EEeeeeccCCCeeEEE--ECCCCCEEEEeeCCCcE
Q 019482          205 FSKDGTKPFLFCTVQRGDKALLAVYDIST-WN-------------KIGHKRLLRKPASVLS--ISLDGKYLAMGSKDGDI  268 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~-------------~~~~~~~~~~~i~~~~--~s~~~~~l~~~~~dg~i  268 (340)
                      |--  .+     +++-+-++.|..|.... .+             .+..+......|.-+.  |.|-++.||.|.+.|.|
T Consensus       259 w~g--d~-----ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v  331 (385)
T KOG1034|consen  259 WFG--DF-----ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKV  331 (385)
T ss_pred             HHh--hh-----eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcE
Confidence            432  22     57777788999998721 11             1233333445565554  45668999999999999


Q ss_pred             EEEeccCceEeecccccc--cccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          269 CVVDVKKMEINHWSKRLH--LGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      ++||++..++.......|  .+..|...+|+.|+..|+...+|+.|--|+.
T Consensus       332 ~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  332 YVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             EEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence            999999876642221111  2468999999999999999999998877764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.94  E-value=1.2e-24  Score=166.67  Aligned_cols=269  Identities=14%  Similarity=0.096  Sum_probs=198.4

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee----e--ccccCCCCCCCCCeEEEEEe-------cCCCeEEEcc
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN----L--LAKKMPPLQDAGPQKCLSFS-------VDGSRFAAGG  131 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~----~--~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~  131 (340)
                      -...+.|+|||..|++-+.|..+.+|++........    .  .............|..-+|-       |+..++++.+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            356789999999999999999999999854321111    0  00001111234567777775       5667999999


Q ss_pred             CCCcEEEEeCCCCceeecccc--Ccc---ceeEEEecCCCCeEEEeeCCCeEEEEEc-cCCeeEEE---e---ecCCCCc
Q 019482          132 VDGHLRIMHWPSLRIILDEPK--AHK---SVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWTF---L---TRNSDEK  199 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~--~~~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~-~~~~~~~~---~---~~~~~~~  199 (340)
                      ++.-|.+||.-+|+....+..  |.+   ...+++|+|||.+|++|- ...|++||+ +.|.-...   +   +....+.
T Consensus       131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            999999999999887655543  322   457899999999998875 689999999 44432211   1   1123467


Q ss_pred             eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceE
Q 019482          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI  278 (340)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~  278 (340)
                      +.+++|+|.....    ++.++....+-||.-....++..+.+|.+.|+.+.|.++|+.|++|.. |..|-.||++....
T Consensus       210 isc~a~sP~~~~~----~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  210 ISCFAFSPMDSKT----LAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             eeeeeccCCCCcc----eeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence            8899999987642    688888889999999999999999999999999999999999999975 67899999987544


Q ss_pred             eecccccccccceeeEE--EecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482          279 NHWSKRLHLGTSIALVE--FCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       279 ~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                      +......|.+..-..|-  ..|++++|++|+.||.|++|+++.+.+  .......|+..+|.||
T Consensus       286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--~~sv~~~~sd~vNgvs  347 (406)
T KOG2919|consen  286 PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--EVSVTGNYSDTVNGVS  347 (406)
T ss_pred             hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--ccccccccccccccee
Confidence            33322345333333444  468899999999999999999998775  3455666777777764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.94  E-value=3e-24  Score=169.03  Aligned_cols=308  Identities=12%  Similarity=0.083  Sum_probs=212.8

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc-cCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY-TSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +.||+++.|.++..  +.+++|+      .|..|++|.+......-. ..-.....|..|...|+++.|+|+|+.||+|+
T Consensus        13 ~~pv~s~dfq~n~~--~~laT~G------~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~   84 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSL--NKLATAG------GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG   84 (434)
T ss_pred             CCceEEEEeccCcc--cceeccc------CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence            46888999988644  3666665      677799999874332221 12234456889999999999999999999999


Q ss_pred             cCCCEEEEEecCceee---------eeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           83 TNGGCKLFEVYGGATD---------INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      .+|.+.+|....-...         ............|...|..++|+|++.++++++.|..+++||+..|........|
T Consensus        85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh  164 (434)
T KOG1009|consen   85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH  164 (434)
T ss_pred             CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence            9999999987621110         0000000111237789999999999999999999999999999999999888888


Q ss_pred             ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--------c-C---------C----CCceeeEEEccCCCc
Q 019482          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--------R-N---------S----DEKIELCRFSKDGTK  211 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~-~---------~----~~~v~~~~~~~~~~~  211 (340)
                      ...+..++|.|-++++++-+.|...+.+.+...+.+....        . +         +    ..-...++|+|+|..
T Consensus       165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l  244 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL  244 (434)
T ss_pred             ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence            8899999999999999999999877777765433322211        0 0         0    012445789999985


Q ss_pred             ceEEEE-EecCC---cceEEEEECCCC-cEEeeeeccCCCeeEEEECC------------------CCCEEEEeeCCCcE
Q 019482          212 PFLFCT-VQRGD---KALLAVYDISTW-NKIGHKRLLRKPASVLSISL------------------DGKYLAMGSKDGDI  268 (340)
Q Consensus       212 ~~~~~~-~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~dg~i  268 (340)
                      +..-.- +..+.   -+..++|+-... ++...+.....+...+.++|                  -+-.+++++ .+.|
T Consensus       245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~sv  323 (434)
T KOG1009|consen  245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSV  323 (434)
T ss_pred             EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceE
Confidence            211100 00011   123345543322 23334444444444444443                  223455555 4579


Q ss_pred             EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ++||.++..++......| -..|+.++|++||..++..|.||...+-.++...
T Consensus       324 yvydtq~~~P~~~v~nih-y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  324 YVYDTQTLEPLAVVDNIH-YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEeccccccceEEEeeee-eeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            999999999988887778 5799999999999999999999988887776544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-24  Score=165.31  Aligned_cols=243  Identities=15%  Similarity=0.173  Sum_probs=184.6

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  145 (340)
                      -.|+.|++-|.+||+|+.||.|.|||+.+......+.       .|..+|.+++||+||++|++++.|..|.+||+..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-------aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-------AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-------ccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence            7899999999999999999999999999877544433       388899999999999999999999999999999999


Q ss_pred             eeeccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCC----CCceeeEEEccCCCcceEEEEEec
Q 019482          146 IILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      +..++ ....+|..+.|+|. .+..+++-.+..-.+-++..++. ..+....    +....+..|.+.|++     +++|
T Consensus        99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~y-----IitG  171 (405)
T KOG1273|consen   99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKY-----IITG  171 (405)
T ss_pred             ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCE-----EEEe
Confidence            77665 45679999999993 44444444455556666654222 1111111    112334468899998     8999


Q ss_pred             CCcceEEEEECCCCcEEeeeeccC-CCeeEEEECCCCCEEEEeeCCCcEEEEeccCc-------eEe--ecccccccccc
Q 019482          221 GDKALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKM-------EIN--HWSKRLHLGTS  290 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-------~~~--~~~~~~~~~~~  290 (340)
                      ...|.+.++|..+.+++..++... ..|..+.++..|++|+.-+.|..|+.|+++.-       ++.  +.+...-....
T Consensus       172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~  251 (405)
T KOG1273|consen  172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ  251 (405)
T ss_pred             cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence            999999999999999988888776 78999999999999999999999999998631       111  22111111224


Q ss_pred             eeeEEEecCCeEEEEEec-CCcEEEEEecCCCC
Q 019482          291 IALVEFCPTQRVVLTASK-EWGAMITKLTVPAD  322 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~  322 (340)
                      -.++.|+.+|.+++.++. -..++||.-...+.
T Consensus       252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL  284 (405)
T KOG1273|consen  252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL  284 (405)
T ss_pred             hhheeecCCccEEEeccccceeEEEEecCCcce
Confidence            567889999999887774 46799998776553

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7e-25  Score=174.36  Aligned_cols=256  Identities=13%  Similarity=0.140  Sum_probs=192.0

Q ss_pred             EEeeeeec----CCCccEEEEcCCCCcccCCCceEEEEeCCCCCCccc-------------CCeeeEEEecCCCCeeEEE
Q 019482            8 TCGSWIKR----PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYT-------------SPLVTYVFDESEGDPMTIA   70 (340)
Q Consensus         8 ~~~~w~~~----~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~-------------~~~~~~~~~~h~~~v~~~~   70 (340)
                      .|++|...    .+.++++|.|.      .+..|.||+++-....++.             .........+|++.|.+++
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGt------mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls  250 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGT------MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS  250 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEec------cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence            48888764    34478999888      4556999999854432210             0111122457999999999


Q ss_pred             EcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceee
Q 019482           71 VNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        71 ~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~  148 (340)
                      |+..- +.||+|+.|.+|.+||+.++++...+..       |...|.++.|+| ...+|++|+.|++|.+.|.+......
T Consensus       251 ~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~-------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~  323 (463)
T KOG0270|consen  251 WNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH-------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG  323 (463)
T ss_pred             hccccceeEEecCCCceEEEEEcCCCCcceehhh-------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence            98754 5889999999999999999987665542       778999999999 67799999999999999998543333


Q ss_pred             ccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482          149 DEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (340)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (340)
                      ..-...+.|..++|.|.. ..++++..||+|+-+|+|+. +++.++.. |++.|.++++++.-..+    +.+++.|+.+
T Consensus       324 ~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A-Hd~~ISgl~~n~~~p~~----l~t~s~d~~V  398 (463)
T KOG0270|consen  324 KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA-HDDEISGLSVNIQTPGL----LSTASTDKVV  398 (463)
T ss_pred             ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe-ccCCcceEEecCCCCcc----eeeccccceE
Confidence            333445689999999955 45778889999999999976 77888774 55689999999887763    7889999999


Q ss_pred             EEEECCCCcE--EeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeec
Q 019482          227 AVYDISTWNK--IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       227 ~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      ++|++...++  +......-+...|+++.|+- -.++.|+..+.+++||+.+....+.
T Consensus       399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             EEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            9999875443  22211112346777888864 4677788888899999988776554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.94  E-value=4.1e-24  Score=161.27  Aligned_cols=274  Identities=12%  Similarity=0.179  Sum_probs=205.6

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEEecC-------CCEEEEEecCceeeeee---
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCSTTN-------GGCKLFEVYGGATDINL---  101 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d-------~~i~iw~~~~~~~~~~~---  101 (340)
                      .+|.|.+..+++....+.     ...|..|.+.|..++-+|-.. .|+++-.+       ..+.||.+.........   
T Consensus        38 ~dNqVhll~~d~e~s~l~-----skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl  112 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELL-----SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL  112 (370)
T ss_pred             CcceeEEEEecCccchhh-----hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh
Confidence            679999999997775543     345667899999999999555 55555432       24679998654322111   


Q ss_pred             ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-eccc-----cCccceeEEEecC--CCCeEEEee
Q 019482          102 LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEP-----KAHKSVLDMDFSL--DSEFLATTS  173 (340)
Q Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~-----~~~~~i~~~~~~~--~~~~l~~~~  173 (340)
                      ..-......+.+.|.|+.|.|++..+++.. |..|.+|++..+..+ ..+.     ++....++-+|+|  +++.+++.+
T Consensus       113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~  191 (370)
T KOG1007|consen  113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS  191 (370)
T ss_pred             hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence            110111112457899999999999998876 788999999877652 2221     2234678889999  788888875


Q ss_pred             CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEE
Q 019482          174 TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSI  252 (340)
Q Consensus       174 ~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~  252 (340)
                       |+++..||+++.++...+...|...+..+.|+|+-++.    ++++++|+.|++||.+..+ ++..+..|...+.++.|
T Consensus       192 -d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~----lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf  266 (370)
T KOG1007|consen  192 -DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHI----LVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF  266 (370)
T ss_pred             -CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEE----EEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence             89999999999999888888888889999999998764    7999999999999999765 78889999999999999


Q ss_pred             CCC-CCEEEEeeCCCcEEEEeccCce------------------------Eeec----ccccccccceeeEEEecCCe-E
Q 019482          253 SLD-GKYLAMGSKDGDICVVDVKKME------------------------INHW----SKRLHLGTSIALVEFCPTQR-V  302 (340)
Q Consensus       253 s~~-~~~l~~~~~dg~i~i~d~~~~~------------------------~~~~----~~~~~~~~~i~~~~~~~~~~-~  302 (340)
                      +|. .++|++|+.|..|.+|...+-.                        ++.-    ....| ...|.+++||.-.. .
T Consensus       267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydeh-EDSVY~~aWSsadPWi  345 (370)
T KOG1007|consen  267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEH-EDSVYALAWSSADPWI  345 (370)
T ss_pred             cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccc-ccceEEEeeccCCCee
Confidence            994 5788899999999999654311                        0000    11234 57899999998665 5


Q ss_pred             EEEEecCCcEEEEEec
Q 019482          303 VLTASKEWGAMITKLT  318 (340)
Q Consensus       303 l~~~~~dg~i~iw~~~  318 (340)
                      +|+-+.||.+.|-+++
T Consensus       346 FASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  346 FASLSYDGRVIISSVP  361 (370)
T ss_pred             EEEeccCceEEeecCC
Confidence            6889999999988774

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.94  E-value=2.3e-24  Score=168.13  Aligned_cols=230  Identities=15%  Similarity=0.230  Sum_probs=171.3

Q ss_pred             CCCceEEEEeCCCCCCcc--------cCCeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeecc
Q 019482           33 SPSVLEIFSFDPKTTSVY--------TSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLA  103 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~  103 (340)
                      ..+.+++|++.+.-..+.        ......+++.+|...=++++|||-. -.|++|..-+.|++|...++......  
T Consensus       173 e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~--  250 (440)
T KOG0302|consen  173 ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQ--  250 (440)
T ss_pred             ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecC--
Confidence            345588888764332221        2344667899999999999999933 25888888889999999886543222  


Q ss_pred             ccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCc--eeeccccCccceeEEEecCCCCeEEEeeCCCeEEE
Q 019482          104 KKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI  180 (340)
Q Consensus       104 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i  180 (340)
                        .+...|...|..++|||. ...|++|+.||+|+|||++.+.  .......|...|+.+.|+.+-.+||+|+.||+++|
T Consensus       251 --~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~i  328 (440)
T KOG0302|consen  251 --RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSI  328 (440)
T ss_pred             --ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEE
Confidence              333458999999999994 5589999999999999999873  22234667779999999998889999999999999


Q ss_pred             EEccC---CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----------------Eeeee
Q 019482          181 WKTED---GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----------------IGHKR  241 (340)
Q Consensus       181 wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----------------~~~~~  241 (340)
                      ||+++   ++++..++. |..+|+++.|+|.....    +++++.|.+|.+||+..-..                .+.+.
T Consensus       329 wDLR~~~~~~pVA~fk~-Hk~pItsieW~p~e~s~----iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLF  403 (440)
T KOG0302|consen  329 WDLRQFKSGQPVATFKY-HKAPITSIEWHPHEDSV----IAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLF  403 (440)
T ss_pred             EEhhhccCCCcceeEEe-ccCCeeEEEeccccCce----EEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEE
Confidence            99985   567777774 56799999999987653    78889999999999863211                11122


Q ss_pred             cc--CCCeeEEEECCC-CCEEEEeeCCCcEEEEe
Q 019482          242 LL--RKPASVLSISLD-GKYLAMGSKDGDICVVD  272 (340)
Q Consensus       242 ~~--~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d  272 (340)
                      .|  ...+..+.|+++ ..++++.+.|| +.||.
T Consensus       404 VHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  404 VHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             EecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            23  345777889885 45777777887 55553

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=160.22  Aligned_cols=290  Identities=17%  Similarity=0.171  Sum_probs=204.9

Q ss_pred             EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc----cCCeeeEEEec-CCCCeeEEEEc-------CCC
Q 019482            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----TSPLVTYVFDE-SEGDPMTIAVN-------PSG   75 (340)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~----~~~~~~~~~~~-h~~~v~~~~~~-------~~~   75 (340)
                      ..+.|+|+..  .+|+       ...++.+.+|++..+.-.-.    .......+++. ....|+..+|-       |+.
T Consensus        53 kgckWSPDGS--ciL~-------~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t  123 (406)
T KOG2919|consen   53 KGCKWSPDGS--CILS-------LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST  123 (406)
T ss_pred             ccceeCCCCc--eEEe-------ecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence            4678999654  4565       56889999999875332211    01111112222 23457788875       677


Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC-CCCcee--ecc--
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW-PSLRII--LDE--  150 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~-~~~~~~--~~~--  150 (340)
                      .++|+.+++.-|++||..+++....+..-.  ....-....+++|+|||.+|++|. ...|+++|+ +.|...  ...  
T Consensus       124 ~l~a~ssr~~PIh~wdaftG~lraSy~~yd--h~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~  200 (406)
T KOG2919|consen  124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYD--HQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT  200 (406)
T ss_pred             ceeeeccccCceeeeeccccccccchhhhh--hHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence            899999999999999999988655543211  111223557899999999999875 578999998 444321  111  


Q ss_pred             ---ccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC-Ccce
Q 019482          151 ---PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKAL  225 (340)
Q Consensus       151 ---~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~  225 (340)
                         .+..+-|.+++|+| +.+.++.++...++-||.-..+.++..+- .+.+.|+.++|.++|+.     ++++. .+..
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~-----lfsGaRk~dk  274 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNK-----LFSGARKDDK  274 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCe-----ecccccCCCe
Confidence               12234688999999 66799999999999999988888877775 56678999999999997     45544 5788


Q ss_pred             EEEEECCCCc-EEeeeeccCC---CeeEEEECCCCCEEEEeeCCCcEEEEeccC-ceEeecccccccccceeeEEEecCC
Q 019482          226 LAVYDISTWN-KIGHKRLLRK---PASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       226 i~i~d~~~~~-~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      |..||+|.-. ++..+..|..   .---....|++++|++|+.||.|++||+++ +.....+ ..+ ...++.++++|--
T Consensus       275 Il~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~-~~~-sd~vNgvslnP~m  352 (406)
T KOG2919|consen  275 ILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT-GNY-SDTVNGVSLNPIM  352 (406)
T ss_pred             EEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc-ccc-cccccceecCccc
Confidence            9999999644 4444544433   122345578999999999999999999998 5544443 334 5789999999998


Q ss_pred             eEEEEEecCCcEEEEEecCC
Q 019482          301 RVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~  320 (340)
                      .++++++..   +++..+..
T Consensus       353 pilatssGq---r~f~~~~d  369 (406)
T KOG2919|consen  353 PILATSSGQ---RIFKYPKD  369 (406)
T ss_pred             ceeeeccCc---eeecCCCc
Confidence            888888766   55555443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=182.13  Aligned_cols=244  Identities=13%  Similarity=0.134  Sum_probs=200.1

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC---CCCeEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGDDFV   79 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~   79 (340)
                      +..-+.|++-+|   +++.||+|.+.+.      +++|++.        +......++.|+.+|.|+.|+.   ..++||
T Consensus       458 ~r~G~R~~~vSp---~gqhLAsGDr~Gn------lrVy~Lq--------~l~~~~~~eAHesEilcLeyS~p~~~~kLLA  520 (1080)
T KOG1408|consen  458 SRFGFRALAVSP---DGQHLASGDRGGN------LRVYDLQ--------ELEYTCFMEAHESEILCLEYSFPVLTNKLLA  520 (1080)
T ss_pred             cccceEEEEECC---CcceecccCccCc------eEEEEeh--------hhhhhhheecccceeEEEeecCchhhhHhhh
Confidence            456688999999   6788999997776      9999997        4444456788999999999985   346899


Q ss_pred             EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC--CeEEEccCCCcEEEEeCCC-CceeeccccCc--
Q 019482           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPS-LRIILDEPKAH--  154 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~--  154 (340)
                      ++++|..|.|||+...-.......      .|...|+++.|..+|  ..+++++.|..|.+ +... ......+..++  
T Consensus       521 SasrdRlIHV~Dv~rny~l~qtld------~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t  593 (1080)
T KOG1408|consen  521 SASRDRLIHVYDVKRNYDLVQTLD------GHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQT  593 (1080)
T ss_pred             hccCCceEEEEecccccchhhhhc------ccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccc
Confidence            999999999999976543322222      378999999999877  67889998987654 4332 11112222222  


Q ss_pred             ---cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC--CCceeeEEEccCCCcceEEEEEecCCcceEEEE
Q 019482          155 ---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (340)
Q Consensus       155 ---~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  229 (340)
                         ..+.+|+..|..+++++++.|..|+|||+++++..+.+++.+  ++..-.+...|.|.+     +++...|.++.++
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY-----~atScsdktl~~~  668 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY-----LATSCSDKTLCFV  668 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE-----EEEeecCCceEEE
Confidence               368999999999999999999999999999999999998544  356777888999988     8999999999999


Q ss_pred             ECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       230 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      |..+++++..+.+|...|+.+.|.+|-+.|++.+.||.|.+|.+..
T Consensus       669 Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  669 DFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            9999999999999999999999999999999999999999998864

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=3.2e-24  Score=176.74  Aligned_cols=249  Identities=18%  Similarity=0.186  Sum_probs=195.3

Q ss_pred             eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC--eEEEcc
Q 019482           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAAGG  131 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~  131 (340)
                      .+...+.||++.|.++...|.|.+|++|+.||+|+||.+.++.++....        ..+.|.|++|+|.+.  .||++-
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--------~d~~I~~vaw~P~~~~~vLAvA~  462 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--------FDSEIRSVAWNPLSDLCVLAVAV  462 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--------ecceeEEEEecCCCCceeEEEEe
Confidence            3567789999999999999999999999999999999999999987764        346899999999765  344433


Q ss_pred             CCCcEEEEeCCCC---------------------------------c----eeeccccCccceeEEEecCCCCeEEEeeC
Q 019482          132 VDGHLRIMHWPSL---------------------------------R----IILDEPKAHKSVLDMDFSLDSEFLATTST  174 (340)
Q Consensus       132 ~dg~i~~~d~~~~---------------------------------~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  174 (340)
                      . ..+.+.+..-|                                 +    -+.....|...|..+.|+..|.||++...
T Consensus       463 ~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~  541 (733)
T KOG0650|consen  463 G-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP  541 (733)
T ss_pred             c-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc
Confidence            2 22444332111                                 0    01123345668999999999999998765


Q ss_pred             C---CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEE
Q 019482          175 D---GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (340)
Q Consensus       175 d---~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  251 (340)
                      +   ..|.|+++........+. ...+.+.++.|+|...++     +. .....|++||+.....++.+......|..++
T Consensus       542 ~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~l-----fV-aTq~~vRiYdL~kqelvKkL~tg~kwiS~ms  614 (733)
T KOG0650|consen  542 DSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYL-----FV-ATQRSVRIYDLSKQELVKKLLTGSKWISSMS  614 (733)
T ss_pred             CCCcceEEEEecccccccCchh-hcCCceeEEEecCCCceE-----EE-EeccceEEEehhHHHHHHHHhcCCeeeeeee
Confidence            4   579999998766655554 344679999999998863     22 2366799999999887777777778899999


Q ss_pred             ECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          252 ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       252 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      .+|.|.-|+.|+.|+.+..||+.-..........| ...+++++|++.-.++++|+.||.+.|+.-..
T Consensus       615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V  681 (733)
T KOG0650|consen  615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV  681 (733)
T ss_pred             ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence            99999999999999999999998765544444455 67999999999999999999999999986544

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=2.2e-23  Score=174.42  Aligned_cols=289  Identities=17%  Similarity=0.219  Sum_probs=214.7

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      -+.+-|+|+.   ++++.-+      ..+..++|.-. +..    .-.......||.+.|..++|+|.|++|++.+.|.+
T Consensus       319 F~g~lw~~n~---~~ii~~g------~~Gg~hlWkt~-d~~----~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  319 FWGGLWSPNS---NVIIAHG------RTGGFHLWKTK-DKT----FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             eeeEEEcCCC---CEEEEec------ccCcEEEEecc-Ccc----ceeeccccccccccceeeeecCCCCEEEEeccccc
Confidence            4566777743   3343333      34448888821 211    22344557899999999999999999999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-----------------------
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-----------------------  143 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-----------------------  143 (340)
                      -|++-....+......   ..+.-|.-...|++|-+....+++|.....+|+|+...                       
T Consensus       385 TRlFa~wg~q~~wHEi---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~g  461 (764)
T KOG1063|consen  385 TRLFARWGRQQEWHEI---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDG  461 (764)
T ss_pred             eeeecccccccceeee---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccc
Confidence            9998776333222222   22233777889999998767889999889999997621                       


Q ss_pred             --------------------Cce---------------------------------eeccccCccceeEEEecCCCCeEE
Q 019482          144 --------------------LRI---------------------------------ILDEPKAHKSVLDMDFSLDSEFLA  170 (340)
Q Consensus       144 --------------------~~~---------------------------------~~~~~~~~~~i~~~~~~~~~~~l~  170 (340)
                                          |..                                 +.++.+|.-.|++++.+|+++++|
T Consensus       462 A~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliA  541 (764)
T KOG1063|consen  462 ANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIA  541 (764)
T ss_pred             cccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEe
Confidence                                000                                 012445666899999999999999


Q ss_pred             EeeCCC-----eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----Eeeee
Q 019482          171 TTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKR  241 (340)
Q Consensus       171 ~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~  241 (340)
                      +++...     .|++|+..+-..++.+.. |.-.|+.++||||+++     +++.+.|.++.+|.......    ....+
T Consensus       542 SaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsLTVT~l~FSpdg~~-----LLsvsRDRt~sl~~~~~~~~~e~~fa~~k  615 (764)
T KOG1063|consen  542 SACKSSLKEHAVIRLWNTANWLQVQELEG-HSLTVTRLAFSPDGRY-----LLSVSRDRTVSLYEVQEDIKDEFRFACLK  615 (764)
T ss_pred             ehhhhCCccceEEEEEeccchhhhheecc-cceEEEEEEECCCCcE-----EEEeecCceEEeeeeecccchhhhhcccc
Confidence            998543     599999988888777765 4567999999999998     89999999999999854331    22356


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc--eEeecccccccccceeeEEEecC-----CeEEEEEecCCcEEE
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWSKRLHLGTSIALVEFCPT-----QRVVLTASKEWGAMI  314 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i  314 (340)
                      .|..-|.+..|+|+++++++++.|.+|++|.....  +.+..+.....+..|+.++|.|-     +..++.|-..|.|.+
T Consensus       616 ~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l  695 (764)
T KOG1063|consen  616 AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVL  695 (764)
T ss_pred             ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEE
Confidence            78888999999999999999999999999998876  44333222223678999999872     237788888999999


Q ss_pred             EEec
Q 019482          315 TKLT  318 (340)
Q Consensus       315 w~~~  318 (340)
                      |+.+
T Consensus       696 ~~~~  699 (764)
T KOG1063|consen  696 WRRK  699 (764)
T ss_pred             Eecc
Confidence            9976

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=7.5e-24  Score=169.18  Aligned_cols=256  Identities=14%  Similarity=0.054  Sum_probs=191.0

Q ss_pred             EEEecCCCCeeEEEEcCCC--CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCC
Q 019482           57 YVFDESEGDPMTIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD  133 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  133 (340)
                      ...+.+.++|.+++|+|..  +.+|+|..-|+|-+||+.+.+....-   ......|.++|.++.|+| +-..+++.+.|
T Consensus       180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~---v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG---VYLFTPHSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc---eEEeccCCccccceEecCCChhheeeeccC
Confidence            4566789999999999965  47888888999999999633221110   111224889999999999 55689999999


Q ss_pred             CcEEEEeCCCCceeecccc--CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          134 GHLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      |+|++-|++....-..+..  ....+..+.|+.+...++.+..=|...+||++++........-|...|.+++++|...+
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            9999999987643322222  33467889999888878888777799999999876643333344558999999999887


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc----CceEeeccc
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK----KMEINHWSK  283 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~  283 (340)
                      .    +++++.|++.+|||++....    +.....|...|.++.|||.+..|++.+.|..|+|||..    ...+...+.
T Consensus       337 ~----laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  337 F----LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             h----eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence            5    79999999999999986543    33445678899999999988779999999999999984    233333332


Q ss_pred             ccccc---cceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          284 RLHLG---TSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       284 ~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ..+..   -......|.|+..++++|-.-..|-|++-..
T Consensus       413 Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~  451 (498)
T KOG4328|consen  413 HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG  451 (498)
T ss_pred             ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence            22211   1345678999999999998888888877543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=7.9e-23  Score=155.64  Aligned_cols=254  Identities=11%  Similarity=0.145  Sum_probs=183.0

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEEEe
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCST   82 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~   82 (340)
                      .-|.|+.|.+.   ++-+|+++      +|.+++||+++....    +..+....+.|.+.|..+.|.+  -|+.+|+++
T Consensus        14 DlihdVs~D~~---GRRmAtCS------sDq~vkI~d~~~~s~----~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS   80 (361)
T KOG2445|consen   14 DLIHDVSFDFY---GRRMATCS------SDQTVKIWDSTSDSG----TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS   80 (361)
T ss_pred             ceeeeeeeccc---Cceeeecc------CCCcEEEEeccCCCC----ceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence            45899999983   34455554      777899999865443    4456667889999999999965  589999999


Q ss_pred             cCCCEEEEEecCceeee--eeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCC------ceeeccc-
Q 019482           83 TNGGCKLFEVYGGATDI--NLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSL------RIILDEP-  151 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~-  151 (340)
                      .|+++.||.-.......  ..-............|+++.|.|  -|-.|++++.||.+|||+...-      .....+. 
T Consensus        81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~  160 (361)
T KOG2445|consen   81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN  160 (361)
T ss_pred             cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence            99999999863221110  00000111123457899999999  4668999999999999986532      1111221 


Q ss_pred             ------cCccceeEEEecCC---CCeEEEeeCC-----CeEEEEEccCCe----eEEEeecCCCCceeeEEEccCCCcce
Q 019482          152 ------KAHKSVLDMDFSLD---SEFLATTSTD-----GSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       152 ------~~~~~i~~~~~~~~---~~~l~~~~~d-----~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                            .++.+..|+.|+|.   ..+|+.|+.+     +.++||....+.    .+.++. .+..+|++++|.|+-...|
T Consensus       161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y  239 (361)
T KOG2445|consen  161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSY  239 (361)
T ss_pred             ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCce
Confidence                  23447889999973   4578888755     479999876543    234444 4567999999999854433


Q ss_pred             EEEEEecCCcceEEEEECCCC--------------------cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482          214 LFCTVQRGDKALLAVYDISTW--------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~--------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                      - .+++++.|| |+||.++..                    +.+..+..|++.+..+.|+-.|..|++.+.||.|++|..
T Consensus       240 ~-~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  240 H-LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             e-eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            2 368888899 999998731                    234556788899999999999999999999999999976


Q ss_pred             c
Q 019482          274 K  274 (340)
Q Consensus       274 ~  274 (340)
                      .
T Consensus       318 n  318 (361)
T KOG2445|consen  318 N  318 (361)
T ss_pred             h
Confidence            4

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.92  E-value=2.9e-23  Score=163.04  Aligned_cols=237  Identities=12%  Similarity=0.116  Sum_probs=179.8

Q ss_pred             EecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcE
Q 019482           59 FDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHL  136 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i  136 (340)
                      +.||+++|..++|+| +...||+|+.|.+|.||.+-.+.....+.........|...|--++|+|. .+.|++++.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            679999999999999 55688999999999999997765544443222223458889999999994 5688999999999


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      .+||+.+++....+. |.+.|.++.|+.||.+|++++.|..|+|||.++++.+..-..+.......+.|-.++.  ++..
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~--i~tT  233 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK--IFTT  233 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc--eeee
Confidence            999999999887775 8899999999999999999999999999999999999888666666677788888888  2333


Q ss_pred             EEecCCcceEEEEECCCCcEE---eeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEe-ecccccccccce
Q 019482          217 TVQRGDKALLAVYDISTWNKI---GHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEIN-HWSKRLHLGTSI  291 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~~~~~~~~~~i  291 (340)
                      .++...+.++-+||..+.+..   ..+.. ...|.---|.||.+.++.++ .|+.|+.|.+....+. +.+.......+-
T Consensus       234 Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQ  312 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQ  312 (472)
T ss_pred             ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcc
Confidence            444557889999998775532   22222 23455566788888776654 6899999999776532 222111113455


Q ss_pred             eeEEEecC
Q 019482          292 ALVEFCPT  299 (340)
Q Consensus       292 ~~~~~~~~  299 (340)
                      ..+.|-|.
T Consensus       313 RG~g~mPK  320 (472)
T KOG0303|consen  313 RGMGFMPK  320 (472)
T ss_pred             cccccccc
Confidence            66666664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.92  E-value=2.1e-23  Score=174.36  Aligned_cols=279  Identities=13%  Similarity=0.145  Sum_probs=203.8

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (340)
                      -|+.++|-|+..+ .++|.         ++.+.+|+.+        +.....++++|.+.|++++|+.||+.+|+|+.|.
T Consensus        14 ci~d~afkPDGsq-L~lAA---------g~rlliyD~n--------dG~llqtLKgHKDtVycVAys~dGkrFASG~aDK   75 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQ-LILAA---------GSRLLVYDTS--------DGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADK   75 (1081)
T ss_pred             chheeEECCCCce-EEEec---------CCEEEEEeCC--------CcccccccccccceEEEEEEccCCceeccCCCce
Confidence            5788999997653 33342         2346777665        4445567999999999999999999999999999


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCC
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD  165 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  165 (340)
                      .|.+|+..-... .+        ..|...|.|+.|+|-.+.|++++-. ..-+|..+..... +. .....+.+.+|..|
T Consensus        76 ~VI~W~~klEG~-Lk--------YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~-K~-kss~R~~~CsWtnD  143 (1081)
T KOG1538|consen   76 SVIIWTSKLEGI-LK--------YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVS-KH-KSSSRIICCSWTND  143 (1081)
T ss_pred             eEEEecccccce-ee--------eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHH-hh-hhheeEEEeeecCC
Confidence            999998654322 11        2488999999999998899988753 4678886543322 22 22347889999999


Q ss_pred             CCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc
Q 019482          166 SEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL  243 (340)
Q Consensus       166 ~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (340)
                      |++++.|-.+|+|.+-+- ++++...+.  ++.+.+|.+++|+|....-..-.++......++.+|.+. |+.+..-+..
T Consensus       144 GqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L  221 (1081)
T KOG1538|consen  144 GQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL  221 (1081)
T ss_pred             CcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC
Confidence            999999999999999864 444433333  456678999999997542111113444555666666554 3444433444


Q ss_pred             CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +-...|+.+.|+|.+++.|+.|+.+++|.-+ |-.+.++..  ....|+.++..|++++++.|..||++--|++-.
T Consensus       222 ~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~--~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  222 NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGE--QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             CCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccc--cceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence            4566789999999999999999999999754 434433322  256899999999999999999999999998753

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.8e-24  Score=188.50  Aligned_cols=256  Identities=13%  Similarity=0.162  Sum_probs=197.6

Q ss_pred             CceeEEeeeeecCCC-ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEE
Q 019482            4 GGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~-~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~   81 (340)
                      ..+-+.++|.+.... ..++|.|.      .||.|.+|+.+......  ..........|++.|..+.|++.+. .||+|
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~------edG~I~ly~p~~~~~~~--~~~~la~~~~h~G~V~gLDfN~~q~nlLASG  135 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGL------EDGNIVLYDPASIIANA--SEEVLATKSKHTGPVLGLDFNPFQGNLLASG  135 (1049)
T ss_pred             cccceeeeecccCCCccceeeccc------cCCceEEecchhhccCc--chHHHhhhcccCCceeeeeccccCCceeecc
Confidence            456788999985433 23455333      67789999887531111  2233455778999999999999655 99999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccccCcc--cee
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK--SVL  158 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~i~  158 (340)
                      +.||.|.|||+...+......     .....+.|.+++|+.. .+.|++++.+|.+.|||++..+.+..+..+..  .+.
T Consensus       136 a~~geI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S  210 (1049)
T KOG0307|consen  136 ADDGEILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCS  210 (1049)
T ss_pred             CCCCcEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcccee
Confidence            999999999998755433332     1224578999999984 45788999999999999998887777765544  578


Q ss_pred             EEEecCCC-CeEEEeeCCC---eEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          159 DMDFSLDS-EFLATTSTDG---SARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       159 ~~~~~~~~-~~l~~~~~d~---~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      .++|+|+. ..+++++.|.   .|.+||+|.-. +++.+. +|...|.++.|++.+..+    +++++.|+.|.+|+.++
T Consensus       211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~~D~~l----llSsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCPQDPRL----LLSSGKDNRIICWNPNT  285 (1049)
T ss_pred             eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCCCCchh----hhcccCCCCeeEecCCC
Confidence            99999965 4577776553   69999998644 445554 555679999999988553    78999999999999999


Q ss_pred             CcEEeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCce
Q 019482          234 WNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       234 ~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      ++.+..+......+..+.|+|.. ..+++++-||.|.||.+.+..
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99999999888899999999965 588889999999999987654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=4.3e-23  Score=170.17  Aligned_cols=287  Identities=14%  Similarity=0.098  Sum_probs=213.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC--eEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~   80 (340)
                      +++.|.|++-.|   .+..+++|+.      ++++++|.+.        +..+..... -.+.|.|++|+|.++  .||+
T Consensus       399 Htg~Vr~iSvdp---~G~wlasGsd------DGtvriWEi~--------TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAv  460 (733)
T KOG0650|consen  399 HTGLVRSISVDP---SGEWLASGSD------DGTVRIWEIA--------TGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAV  460 (733)
T ss_pred             cCCeEEEEEecC---CcceeeecCC------CCcEEEEEee--------cceEEEEEe-ecceeEEEEecCCCCceeEEE
Confidence            367889999888   5678998885      5559999997        555444333 245799999999776  4444


Q ss_pred             EecCCCEEEEEecCceeeee-----e-----------------ccc--------cCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482           81 STTNGGCKLFEVYGGATDIN-----L-----------------LAK--------KMPPLQDAGPQKCLSFSVDGSRFAAG  130 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~-----~-----------------~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (340)
                      +-... +.|.+..-+..+..     .                 ...        -...+.|...|..+.|+..|.||++.
T Consensus       461 A~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV  539 (733)
T KOG0650|consen  461 AVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV  539 (733)
T ss_pred             EecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence            44333 55655433311000     0                 000        00123467789999999999999988


Q ss_pred             cCC---CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482          131 GVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       131 ~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (340)
                      ..+   ..|.|.++.......-+...++.+.++.|+|...+|++++. ..|+|||+..+..++.+.... ..|..++.+|
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~-kwiS~msihp  617 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGS-KWISSMSIHP  617 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCC-eeeeeeeecC
Confidence            654   46889999877666556666778999999999988888875 689999999887777776544 4799999999


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCC-cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec------cCce---
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV------KKME---  277 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~------~~~~---  277 (340)
                      .|..     ++.++.|+.+..||+.-. ++.+.+..|...+++++|++.-.++++|+.||.+.||--      -...   
T Consensus       618 ~GDn-----li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV  692 (733)
T KOG0650|consen  618 NGDN-----LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV  692 (733)
T ss_pred             CCCe-----EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence            9998     889999999999999854 566778889999999999999999999999999999842      2211   


Q ss_pred             Eeeccccccc---ccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          278 INHWSKRLHL---GTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       278 ~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ++..+ .+|.   ...|..+.|+|...+|++++.||+|++|.
T Consensus       693 PlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  693 PLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             eeeec-cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            12222 3442   12488889999999999999999999983

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.92  E-value=3.6e-23  Score=171.72  Aligned_cols=264  Identities=17%  Similarity=0.198  Sum_probs=185.0

Q ss_pred             eEEEEcC---CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           67 MTIAVNP---SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        67 ~~~~~~~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      .+..|++   ....|+.+.+||.|.++|........ ....-.....|.+.|..+.|-|....|++++.|.++++||+++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~-ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL-EERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcch-hhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc
Confidence            3466665   34588999999999999987654330 0111123456999999999999667899999999999999999


Q ss_pred             Cceeec--cccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCe--------------------eEEEee------c
Q 019482          144 LRIILD--EPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGV--------------------AWTFLT------R  194 (340)
Q Consensus       144 ~~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~--------------------~~~~~~------~  194 (340)
                      .+....  +.+|...+.+++|.| |...|++|+.||.+.|||++-..                    +...+.      .
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            887766  788999999999999 55679999999999999987432                    000000      0


Q ss_pred             CCCCc----eeeEEEccCCCcceEEEEEecCC-cceEEEEECCCCcEEeee--------ecc---CCCeeEEEECCCCCE
Q 019482          195 NSDEK----IELCRFSKDGTKPFLFCTVQRGD-KALLAVYDISTWNKIGHK--------RLL---RKPASVLSISLDGKY  258 (340)
Q Consensus       195 ~~~~~----v~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~--------~~~---~~~i~~~~~s~~~~~  258 (340)
                      .+...    |+.+.|- |...     +++++. |+.|++||+++.......        ..+   ...+.++.....|.+
T Consensus       212 A~s~ti~ssvTvv~fk-De~t-----laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFK-DEST-----LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cccCceeeeeEEEEEe-ccce-----eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence            11122    3444444 4443     566665 999999999976543221        112   235677888888899


Q ss_pred             EEEeeCCCcEEEEeccCceEeecc-cccccccc-eeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccccccc
Q 019482          259 LAMGSKDGDICVVDVKKMEINHWS-KRLHLGTS-IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQ  336 (340)
Q Consensus       259 l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v  336 (340)
                      |++.+.|+.|++||+.+...-... ..++.... -..-..+||+.++++|+.|...++|.+..+..  +.....+|...|
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Ght~eV  363 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA--PPALLLGHTREV  363 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC--ChhhhhCcceEE
Confidence            999999999999999874432111 11111111 11224689999999999999999999987764  556677787777


Q ss_pred             ccC
Q 019482          337 NSV  339 (340)
Q Consensus       337 ~~v  339 (340)
                      ..|
T Consensus       364 t~V  366 (720)
T KOG0321|consen  364 TTV  366 (720)
T ss_pred             EEE
Confidence            655

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.91  E-value=9.8e-21  Score=158.16  Aligned_cols=275  Identities=9%  Similarity=0.087  Sum_probs=176.6

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCC
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~  110 (340)
                      ..++.|.+|+++..+ .+    .....+. +.+.+..++++|++++|++++ .++.|.+|+++..........     ..
T Consensus         9 ~~~~~I~~~~~~~~g-~l----~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~-----~~   77 (330)
T PRK11028          9 PESQQIHVWNLNHEG-AL----TLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE-----SP   77 (330)
T ss_pred             CCCCCEEEEEECCCC-ce----eeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee-----ec
Confidence            356779999996322 11    1222232 345678899999999887664 467899999973211111111     01


Q ss_pred             CCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCcee---eccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccC
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTED  185 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~  185 (340)
                      ..+....++|+|++++|++++. ++.|.+|++++....   .....+......++++|+++++++++ .++.|.+||+++
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~  157 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD  157 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence            2235678999999998887764 789999999643211   11112223467788999999886555 569999999976


Q ss_pred             CeeEEE-----eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--Cc--EEeeeeccC------CCeeEE
Q 019482          186 GVAWTF-----LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WN--KIGHKRLLR------KPASVL  250 (340)
Q Consensus       186 ~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~--~~~~~~~~~------~~i~~~  250 (340)
                      ...+..     ...........+.|+|+++++    .++...++.|.+||++.  ++  .+..+....      .....+
T Consensus       158 ~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~l----yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i  233 (330)
T PRK11028        158 DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYA----YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI  233 (330)
T ss_pred             CCcccccCCCceecCCCCCCceEEECCCCCEE----EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence            332211     111122346789999999973    23344589999999973  22  222222211      122358


Q ss_pred             EECCCCCEEEEeeC-CCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEec-CCcEEEEEecCCC
Q 019482          251 SISLDGKYLAMGSK-DGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASK-EWGAMITKLTVPA  321 (340)
Q Consensus       251 ~~s~~~~~l~~~~~-dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~  321 (340)
                      .++|++++++++.. ++.|.+|++.... ..........+.....++|+|||++|+++.. ++.|.+|+++.+.
T Consensus       234 ~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~  307 (330)
T PRK11028        234 HITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET  307 (330)
T ss_pred             EECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence            89999999999865 6899999986432 2211111111235678999999999887775 8999999997543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.4e-24  Score=173.11  Aligned_cols=262  Identities=15%  Similarity=0.179  Sum_probs=192.1

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecccc-CCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      ....+++..|.+.|+.++|+|....|++++.|+.+.+|++...........+. ...-.|.++|.|+++.++++.+++|+
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            44556888899999999999999999999999999999994321111000000 11124899999999999999999999


Q ss_pred             CCCcEEEEeCCCCc----------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec-CCCCce
Q 019482          132 VDGHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKI  200 (340)
Q Consensus       132 ~dg~i~~~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v  200 (340)
                      -||+|+.|++....          ....+.+|.+.++.+++++....|++++.||++++|+.....+ .++.. ...+..
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P  442 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP  442 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence            99999999765221          2234667888999999999888999999999999999876665 22321 122345


Q ss_pred             eeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-------CCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                      .++++-......    .++...-+.-.+++......+..+...       ...+..+.++|.+.+.+++..|+.|+++|.
T Consensus       443 lsvd~~ss~~a~----~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn  518 (577)
T KOG0642|consen  443 LSVDRTSSRPAH----SLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN  518 (577)
T ss_pred             ceEeeccchhHh----hhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence            566665443211    222233333334444443333322211       135678889999999999999999999999


Q ss_pred             cCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .+++++... ..| ...++++++.|+|.+|++++.||.+++|+++.+.
T Consensus       519 ~~~~~l~s~-~a~-~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  519 KTGKILHSM-VAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cccccchhe-eec-cceecceeecCCCceEEeecCCceeehhhccchh
Confidence            999998876 356 4689999999999999999999999999997554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-22  Score=154.81  Aligned_cols=203  Identities=13%  Similarity=0.115  Sum_probs=152.6

Q ss_pred             CCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-----eccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEc
Q 019482          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKT  183 (340)
Q Consensus       110 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~  183 (340)
                      .|...|++++|+.||++|++++.|+.|++|+++..+..     +.... -+..+.+.|.||.+-++ ++-...++++|.+
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~  162 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL  162 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence            48899999999999999999999999999999864321     11111 12567899999887544 4455678999987


Q ss_pred             cCCe---eEE--------EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEE
Q 019482          184 EDGV---AWT--------FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI  252 (340)
Q Consensus       184 ~~~~---~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~  252 (340)
                      ...+   ...        .+...+...+..+-...++.+     +++++.|..|.+||++ |+.+..+......-+..+.
T Consensus       163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~-----imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKY-----IMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             eecccCCCCcccccccccccchhcccceEEEeecCCceE-----EEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            5321   111        122223334555555556665     7899999999999999 8888888877777788899


Q ss_pred             CCCCCEEEEeeCCCcEEEEecc---Cce---Eeecc-cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          253 SLDGKYLAMGSKDGDICVVDVK---KME---INHWS-KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       253 s~~~~~l~~~~~dg~i~i~d~~---~~~---~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ||+|+++++++-.-.|++|.+-   .|.   ..+.+ ..+| ...|..++|+|+...+++.|.||+++|||.+..
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr  310 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR  310 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence            9999999999999999999863   222   22222 2466 689999999999999999999999999998753

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.91  E-value=4.3e-21  Score=149.76  Aligned_cols=244  Identities=18%  Similarity=0.180  Sum_probs=185.3

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--CcEEEEe
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMH  140 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d  140 (340)
                      ...++.+.|+.+...|..|+.|| .++|+...........       .....|--+-|+..  ++|..+.+  ..+++++
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~-------~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~   74 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKD-------TEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVH   74 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhccc-------CCCeEEEEeecccc--eeEEEecCCCceEEEEE
Confidence            34567777999999999999999 8999887654311111       12234555666544  55555443  4599999


Q ss_pred             CCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      .+.+..+..+. ...+|.++.++  -+.|+++-.+ .|+|||+++.+.+.++......+-.-++++|+....+++ .-..
T Consensus        75 ~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA-yp~s  149 (391)
T KOG2110|consen   75 FKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA-YPGS  149 (391)
T ss_pred             cccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE-ecCC
Confidence            88777665543 34578999988  4456666544 599999999999998875433333455566555432221 2234


Q ss_pred             CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCc-EEEEeccCceEeecccccccccceeeEEEecC
Q 019482          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      ...|.|.+||+.+.+++..+..|++++.+++|+++|.+||++++.|+ ||+|.+.+++.+..+..+.....|.+++|+||
T Consensus       150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d  229 (391)
T KOG2110|consen  150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD  229 (391)
T ss_pred             CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence            45799999999999999999999999999999999999999999986 88999999999998887766668999999999


Q ss_pred             CeEEEEEecCCcEEEEEecCCC
Q 019482          300 QRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +++|++.|..++|+|+.++...
T Consensus       230 s~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  230 SQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             CCeEEEecCCCeEEEEEecccc
Confidence            9999999999999999998654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.90  E-value=4.4e-22  Score=165.65  Aligned_cols=159  Identities=19%  Similarity=0.227  Sum_probs=128.4

Q ss_pred             ceeEEEecC-CCCeEEEeeCCCeEEEEEccCC-------eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDG-------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       156 ~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                      .|+++.|.| |...|++++.||.|++|.+..+       .+...+. .|.+.|+++.|+|--..+    +++++.|.+|+
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPLAadv----La~asyd~Ti~  703 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPLAADV----LAVASYDSTIE  703 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEecchhhhH----hhhhhccceee
Confidence            578899999 8889999999999999998753       2333344 455689999999975543    68889999999


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      +||+++++....+.+|...|..++|||+|+.+++.+.||+|++|+.++++....-..+..+..--.+.|.-||+++++.+
T Consensus       704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence            99999999989999999999999999999999999999999999998876543322233344556788999999999888


Q ss_pred             cCC----cEEEEEecC
Q 019482          308 KEW----GAMITKLTV  319 (340)
Q Consensus       308 ~dg----~i~iw~~~~  319 (340)
                      .|.    .|.+|+-..
T Consensus       784 fdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  784 FDKSSERQVQMYDAQT  799 (1012)
T ss_pred             ccccchhhhhhhhhhh
Confidence            773    466666543

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=2.4e-21  Score=152.36  Aligned_cols=205  Identities=14%  Similarity=0.185  Sum_probs=165.0

Q ss_pred             CCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCC-------ceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEE
Q 019482          110 QDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL-------RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARI  180 (340)
Q Consensus       110 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~i  180 (340)
                      .|.++|..++|+| +.+.||+|++|.+|.||++..+       +.+..+.+|...|.-++|+| -.+.|++++.|.+|.+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i  158 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI  158 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence            4899999999999 6678999999999999998754       34556778888999999999 5567999999999999


Q ss_pred             EEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC-CeeEEEECCCCCEE
Q 019482          181 WKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYL  259 (340)
Q Consensus       181 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l  259 (340)
                      ||+.+++.+.++.  |...|+++.|+.+|.+     +.+.+.|..|+|||.++++.+..-..|.+ .-..+.|-.+|..+
T Consensus       159 Wnv~tgeali~l~--hpd~i~S~sfn~dGs~-----l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~  231 (472)
T KOG0303|consen  159 WNVGTGEALITLD--HPDMVYSMSFNRDGSL-----LCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIF  231 (472)
T ss_pred             EeccCCceeeecC--CCCeEEEEEeccCCce-----eeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCcee
Confidence            9999999988886  6678999999999998     89999999999999999999888777764 34456677888865


Q ss_pred             EEee---CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482          260 AMGS---KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA  321 (340)
Q Consensus       260 ~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~  321 (340)
                      .+|.   .+.++-+||....+....+.....++.|.---|.+|..++..+| .|+.|+-|.+....
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            5553   47789999987755433332233245666666788887765554 59999999997655

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=6.1e-22  Score=152.13  Aligned_cols=246  Identities=15%  Similarity=0.163  Sum_probs=181.2

Q ss_pred             CceeEEeeeeecCCC-ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEE
Q 019482            4 GGTVTCGSWIKRPEN-VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS   81 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~-~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~   81 (340)
                      ....+-++|+-+..+ .-++|.||..|      .|++.++.        .......+.+|...|+.+.|+|+. ++++++
T Consensus        89 ~Esfytcsw~yd~~~~~p~la~~G~~G------vIrVid~~--------~~~~~~~~~ghG~sINeik~~p~~~qlvls~  154 (385)
T KOG1034|consen   89 DESFYTCSWSYDSNTGNPFLAAGGYLG------VIRVIDVV--------SGQCSKNYRGHGGSINEIKFHPDRPQLVLSA  154 (385)
T ss_pred             CcceEEEEEEecCCCCCeeEEeeccee------EEEEEecc--------hhhhccceeccCccchhhhcCCCCCcEEEEe
Confidence            455688999986654 45677666544      49999887        455556688999999999999975 588899


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec------------
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD------------  149 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~------------  149 (340)
                      +.|..|++|++++..++..+-+-+    .|.+.|.++.|+++|.+|++++.|.+|++|++...+....            
T Consensus       155 SkD~svRlwnI~~~~Cv~VfGG~e----gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t  230 (385)
T KOG1034|consen  155 SKDHSVRLWNIQTDVCVAVFGGVE----GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKT  230 (385)
T ss_pred             cCCceEEEEeccCCeEEEEecccc----cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCc
Confidence            999999999999999887775433    5899999999999999999999999999999973221100            


Q ss_pred             ----------------cccCccceeEEEecCCCCeEEEeeCCCeEEEEEc-cCCeeEEEee------------cCCCCce
Q 019482          150 ----------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT-EDGVAWTFLT------------RNSDEKI  200 (340)
Q Consensus       150 ----------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~-~~~~~~~~~~------------~~~~~~v  200 (340)
                                      ..-|...|.|+.|-  |+++++=+-++.|..|.. +-++.+...+            .-....+
T Consensus       231 ~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i  308 (385)
T KOG1034|consen  231 TRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI  308 (385)
T ss_pred             cCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence                            11133355666665  688999888999999987 2222211111            0112234


Q ss_pred             eeEEE--ccCCCcceEEEEEecCCcceEEEEECCCCcEEee----eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          201 ELCRF--SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH----KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       201 ~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      +-+.|  .|-++.     ++.+...|.+.+||++..++...    .......|...+|+.||..|+..++|+.|.-||..
T Consensus       309 Wfirf~~d~~~~~-----la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  309 WFIRFAFDPWQKM-----LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEEeecHHHHH-----HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            44444  455665     68888999999999998776311    11224578899999999999999999999999864

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.90  E-value=1.9e-21  Score=147.02  Aligned_cols=261  Identities=16%  Similarity=0.178  Sum_probs=183.7

Q ss_pred             CceeEEeeeeecCCCccEEEEcCC-CCcccCCCceEEEEeCCCCCCccc-CCeeeEEEe-cCCCCeeEEEEcCCCCeEEE
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYT-SPLVTYVFD-ESEGDPMTIAVNPSGDDFVC   80 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~-~~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~   80 (340)
                      .++|..++=+|...  .++++--. .+.++.--.+.||.+......... +..+...|. .+-+.|.|+.|.|++..+++
T Consensus        63 agEvw~las~P~d~--~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klas  140 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQ--RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLAS  140 (370)
T ss_pred             CcceehhhcCCCCC--ceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEE
Confidence            46677777777533  44443222 111233345789988644433111 122223333 45568999999999999998


Q ss_pred             EecCCCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCceeeccccCcc-c
Q 019482           81 STTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-S  156 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~  156 (340)
                      -. |..|.+|+++.... ...+....  ...+....++-+|+|  +++.+++. .|+++..||+++..+...+...++ .
T Consensus       141 m~-dn~i~l~~l~ess~~vaev~ss~--s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~  216 (370)
T KOG1007|consen  141 MD-DNNIVLWSLDESSKIVAEVLSSE--SAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQR  216 (370)
T ss_pred             ec-cCceEEEEcccCcchheeecccc--cccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcce
Confidence            77 55699999987765 22222211  222556778889999  78888775 488999999999888877776664 7


Q ss_pred             eeEEEecCCCC-eEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482          157 VLDMDFSLDSE-FLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (340)
Q Consensus       157 i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  234 (340)
                      +..+.|+|+.+ +|++|+.||.|++||.+..+. +..+. .|...+.++.|+|....+    +++++.|..+.+|....-
T Consensus       217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~VRfn~~hdqL----iLs~~SDs~V~Lsca~sv  291 (370)
T KOG1007|consen  217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAVRFNPEHDQL----ILSGGSDSAVNLSCASSV  291 (370)
T ss_pred             eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEEEecCccceE----EEecCCCceeEEEecccc
Confidence            99999999765 588999999999999987554 45554 566799999999988774    788999999999875321


Q ss_pred             -----------------------------cEEeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccC
Q 019482          235 -----------------------------NKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       235 -----------------------------~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~  275 (340)
                                                   ..+..+..|...|.+++||.-. =.+|+-+.||.+.|=.+..
T Consensus       292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence                                         1234566778899999998744 4567779999998866543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.9e-20  Score=137.39  Aligned_cols=283  Identities=11%  Similarity=0.077  Sum_probs=195.0

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCc--ccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSV--YTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      .|++-+|+|   ..++++.|.      ..+.|.++++.......  .+........++|+++|+.++|+  .++|++++ 
T Consensus        12 tvf~qa~sp---~~~~l~agn------~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-   79 (325)
T KOG0649|consen   12 TVFAQAISP---SKQYLFAGN------LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-   79 (325)
T ss_pred             HHHHHhhCC---cceEEEEec------CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-
Confidence            467778888   345566555      56669999887433222  22333445568999999999998  45666666 


Q ss_pred             CCCEEEEEecCceee---eeeccccCCCC----CCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccc
Q 019482           84 NGGCKLFEVYGGATD---INLLAKKMPPL----QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS  156 (340)
Q Consensus        84 d~~i~iw~~~~~~~~---~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~  156 (340)
                      ||.|+-|..+.....   +.+.. ...+.    -.-..|+++...|..+-++.++.|+.++-||+++|+....+.+|.+.
T Consensus        80 dG~V~gw~W~E~~es~~~K~lwe-~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY  158 (325)
T KOG0649|consen   80 DGLVYGWEWNEEEESLATKRLWE-VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY  158 (325)
T ss_pred             CceEEEeeehhhhhhccchhhhh-hcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence            499999987654321   11110 01111    12356889999997777777778999999999999999999999999


Q ss_pred             eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC---------CCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                      +.++.--.....+++|+.||++|+||.++++.+..+....         ...|.+++-+.  .      -+.++....+.
T Consensus       159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e--d------WlvCGgGp~ls  230 (325)
T KOG0649|consen  159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE--D------WLVCGGGPKLS  230 (325)
T ss_pred             eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC--c------eEEecCCCcee
Confidence            9999885556679999999999999999999988775322         22344444433  3      35566778899


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC-eEEEEE
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ-RVVLTA  306 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~  306 (340)
                      +|.++..++...+.. ..++..+.|..  +.++++++.+.+.-|.+.. .........+  ....+..|+..- ++|-.+
T Consensus       231 lwhLrsse~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s--~~c~s~s~~~~p~k~~s~a  304 (325)
T KOG0649|consen  231 LWHLRSSESTCVFPI-PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG-VLQANIPVES--TACYSASWQTSPIKFISIA  304 (325)
T ss_pred             EEeccCCCceEEEec-ccceeEeeeec--ceEEEeccccceeeeeecc-EEEEeccCCc--cceeeecccCCceEEEEec
Confidence            999999988766654 45677788854  4788888888899998754 3333332233  245666665433 556667


Q ss_pred             ecCCcEEEE
Q 019482          307 SKEWGAMIT  315 (340)
Q Consensus       307 ~~dg~i~iw  315 (340)
                      +..+.+.|+
T Consensus       305 g~s~~~~i~  313 (325)
T KOG0649|consen  305 GFSNKLHIL  313 (325)
T ss_pred             ccceeeeee
Confidence            777777665

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=8.5e-21  Score=162.49  Aligned_cols=267  Identities=12%  Similarity=0.097  Sum_probs=191.5

Q ss_pred             ceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCC
Q 019482           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (340)
Q Consensus        36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  114 (340)
                      .+.+|++....     .|.  ..+. -...|.++.|+| +..+++.|..+|+|.+||+........ .........|..+
T Consensus       223 ~~~vW~~~~p~-----~Pe--~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  223 VLLVWSLKNPN-----TPE--LVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-SGLSALEVSHSEP  293 (555)
T ss_pred             eEEEEecCCCC-----Cce--EEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-cccccccccCCcC
Confidence            67888887432     222  2222 367899999999 556788889999999999987764211 1111223358899


Q ss_pred             eEEEEEecCCC--eEEEccCCCcEEEEeCCCCceee-----ccc-------cCccceeEEEecC-CCCeEEEeeCCCeEE
Q 019482          115 QKCLSFSVDGS--RFAAGGVDGHLRIMHWPSLRIIL-----DEP-------KAHKSVLDMDFSL-DSEFLATTSTDGSAR  179 (340)
Q Consensus       115 v~~~~~~~~~~--~l~~~~~dg~i~~~d~~~~~~~~-----~~~-------~~~~~i~~~~~~~-~~~~l~~~~~d~~v~  179 (340)
                      +..+.|..+..  -|++++.||.|..|+++.-....     ...       .....+++++|.+ +-..++.|+.+|.|.
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence            99999987554  49999999999999886433211     111       1122689999998 667799999999988


Q ss_pred             EEEccCCeeE-------EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCCCeeEEE
Q 019482          180 IWKTEDGVAW-------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLS  251 (340)
Q Consensus       180 iwd~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~  251 (340)
                      --+....+.-       ......+.++|+.+.++|-+..+     +..+.|..+++|... ...++..+..+...+++++
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~-----fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va  448 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKN-----FLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA  448 (555)
T ss_pred             EEeccCCcccccccccccccccccCcceEeeecCCCccce-----eeeeccceeEeccccCCCCcchhhhhccceeeeeE
Confidence            7443322211       11123456789999999998874     333339999999998 6777777777777899999


Q ss_pred             ECCCC-CEEEEeeCCCcEEEEeccCce--EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          252 ISLDG-KYLAMGSKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       252 ~s~~~-~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      |||-. ..++++..||.|.+||+....  +..... .+ ....+.+.|+++|+.|+.|...|.++++++.
T Consensus       449 WSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  449 WSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK-VC-SPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             EcCcCceEEEEEcCCCceehhhhhccccCCccccc-cc-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            99954 678888889999999997543  332222 12 4567888899999999999999999999995

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=1.7e-21  Score=145.40  Aligned_cols=250  Identities=17%  Similarity=0.144  Sum_probs=184.7

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  132 (340)
                      |.+.+.+.+|.+.|+++.|..+++ |.+|...|.|.+|++.+.+....+..      -+...|+.+.--|+ ..+.+-++
T Consensus         4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~------~g~~~it~lq~~p~-d~l~tqgR   75 (323)
T KOG0322|consen    4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL------FGRLFITNLQSIPN-DSLDTQGR   75 (323)
T ss_pred             CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh------hccceeeceeecCC-cchhhcCC
Confidence            444567889999999999987664 89999999999999988765443321      14567788888777 46777888


Q ss_pred             CCcEEEEeCCCCceee------------------------c---c--------------------------ccCccceeE
Q 019482          133 DGHLRIMHWPSLRIIL------------------------D---E--------------------------PKAHKSVLD  159 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~------------------------~---~--------------------------~~~~~~i~~  159 (340)
                      |+.+.+|++.-+..+.                        .   .                          ....+.+.+
T Consensus        76 d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc  155 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC  155 (323)
T ss_pred             CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence            9999999874311100                        0   0                          001123445


Q ss_pred             EEecC-CCC--eEEEeeCCCeEEEEEccCCeeEEEee---------cCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          160 MDFSL-DSE--FLATTSTDGSARIWKTEDGVAWTFLT---------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       160 ~~~~~-~~~--~l~~~~~d~~v~iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                      ..+.. ++.  ++++|-.+|.+.+||+.++..+..+.         ..+..++.++.+.+.-..     .+.++.+..+.
T Consensus       156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-----Gisgga~dkl~  230 (323)
T KOG0322|consen  156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-----GISGGADDKLV  230 (323)
T ss_pred             eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-----CcCCCccccce
Confidence            55433 333  36677789999999999875443332         234568999999876554     67788888899


Q ss_pred             EEECCCC--c--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482          228 VYDISTW--N--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (340)
Q Consensus       228 i~d~~~~--~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  303 (340)
                      .|.+...  .  .-.+.......+..+.+-||++.+|+++.|+.||+|..++.+++..+. .| ...|++++|+|+...+
T Consensus       231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yH-sagvn~vAfspd~~lm  308 (323)
T KOG0322|consen  231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YH-SAGVNAVAFSPDCELM  308 (323)
T ss_pred             eeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hh-hcceeEEEeCCCCchh
Confidence            9988643  2  112233334568889999999999999999999999999999998874 56 5799999999999999


Q ss_pred             EEEecCCcEEEEEe
Q 019482          304 LTASKEWGAMITKL  317 (340)
Q Consensus       304 ~~~~~dg~i~iw~~  317 (340)
                      |++|.|+.|.+|++
T Consensus       309 AaaskD~rISLWkL  322 (323)
T KOG0322|consen  309 AAASKDARISLWKL  322 (323)
T ss_pred             hhccCCceEEeeec
Confidence            99999999999986

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.1e-21  Score=149.90  Aligned_cols=270  Identities=14%  Similarity=0.124  Sum_probs=189.0

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEEEecCCCEEEEEecCceeeeeeccccCCC
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP  108 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  108 (340)
                      +-+.+.+++|+..        +......+++|...++.++|..  ....+.+++.||+|++||++.......+.....  
T Consensus        46 ~lSngsv~lyd~~--------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~--  115 (376)
T KOG1188|consen   46 SLSNGSVRLYDKG--------TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ--  115 (376)
T ss_pred             EecCCeEEEEecc--------chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC--
Confidence            3466779999987        3333456889999999999976  456889999999999999998776555443221  


Q ss_pred             CCCCCCeEEEEEecCCCeEEEccC----CCcEEEEeCCCCce-eecc-ccCccceeEEEecC-CCCeEEEeeCCCeEEEE
Q 019482          109 LQDAGPQKCLSFSVDGSRFAAGGV----DGHLRIMHWPSLRI-ILDE-PKAHKSVLDMDFSL-DSEFLATTSTDGSARIW  181 (340)
Q Consensus       109 ~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~-~~~~-~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iw  181 (340)
                        ...+..|++.+..++.+++|..    +-.|.+||++..+. +..+ ..|++.|+++.|+| +.++|++||.||-|.+|
T Consensus       116 --~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf  193 (376)
T KOG1188|consen  116 --SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF  193 (376)
T ss_pred             --CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence              1246678888778888888863    56799999998766 4333 45677999999999 67899999999999999


Q ss_pred             EccCCeeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC------------Ce
Q 019482          182 KTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK------------PA  247 (340)
Q Consensus       182 d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------~i  247 (340)
                      |++....--.+.  ..+...|.++.|..++-..    +..-+......+|+++.+.++..+....-            .+
T Consensus       194 D~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr----I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  194 DTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR----IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             ecCCCcchhhHHHhhcccceeeeeeeecCCcce----EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            997543211111  1344569999999887211    45557788899999998876544433210            11


Q ss_pred             eEEEECC-CCCEEEEeeC-CCcEEEEecc---Cc---eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          248 SVLSISL-DGKYLAMGSK-DGDICVVDVK---KM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       248 ~~~~~s~-~~~~l~~~~~-dg~i~i~d~~---~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      -. ..+| +...++.++. -|...++-+.   ++   +.+..+..+| ..-|+++.|...+.++.|||.||.+.+|..+
T Consensus       270 I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  270 IN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             ee-cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            11 1234 4455555544 5566665443   22   2333333334 5789999999889999999999999999963

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=8.8e-19  Score=151.92  Aligned_cols=287  Identities=20%  Similarity=0.343  Sum_probs=211.7

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEE-cCCCC-eEEE
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAV-NPSGD-DFVC   80 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~-~l~~   80 (340)
                      ...+.++.+.+..   ..++.++      .++.+.+|+.....       .....+.++. ..+..+.+ ++++. .++.
T Consensus        65 ~~~i~~~~~~~~~---~~~~~~~------~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (466)
T COG2319          65 EDSITSIAFSPDG---ELLLSGS------SDGTIKLWDLDNGE-------KLIKSLEGLHDSSVSKLALSSPDGNSILLA  128 (466)
T ss_pred             cceEEEEEECCCC---cEEEEec------CCCcEEEEEcCCCc-------eeEEEEeccCCCceeeEEEECCCcceEEec
Confidence            4567777887743   3444333      57779999987433       1233444433 36777777 88887 5555


Q ss_pred             Eec-CCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeeccccCccce
Q 019482           81 STT-NGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSV  157 (340)
Q Consensus        81 ~~~-d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~i  157 (340)
                      .+. |+.+.+|+... ......+.       .|...|..++|+|+++.+++++. |+.+++|++..+..+..+..|...+
T Consensus       129 ~~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  201 (466)
T COG2319         129 SSSLDGTVKLWDLSTPGKLIRTLE-------GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV  201 (466)
T ss_pred             cCCCCccEEEEEecCCCeEEEEEe-------cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence            444 89999999987 44333333       27788999999999998888886 9999999999877777777788899


Q ss_pred             eEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEE-EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          158 LDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       158 ~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      .+++|+|++. .+++++.|+.+++||...+..+. .+..+.. .. ...|+|++..     +++++.|+.+++||.+...
T Consensus       202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSL-----LASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             EEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCE-----EEEecCCCcEEEeeecCCC
Confidence            9999999998 55555899999999988777777 4544333 33 3389999954     5688999999999999776


Q ss_pred             E-EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc-ccccccceeeEEEecCCeEEEEE-ecCCcE
Q 019482          236 K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTA-SKEWGA  312 (340)
Q Consensus       236 ~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i  312 (340)
                      . +.....|...+.++.|.|++..+++++.|+.+.+||..+........ ..| ...+..+.|.+++..++.+ ..|+.+
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcE
Confidence            5 44445667899999999988888889889889999998877655543 345 3468999994332455555 678899


Q ss_pred             EEEEecCCC
Q 019482          313 MITKLTVPA  321 (340)
Q Consensus       313 ~iw~~~~~~  321 (340)
                      .+|++....
T Consensus       354 ~~~~~~~~~  362 (466)
T COG2319         354 RLWDLRTGK  362 (466)
T ss_pred             EeeecCCCc
Confidence            999887654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.9e-21  Score=150.79  Aligned_cols=264  Identities=13%  Similarity=0.060  Sum_probs=194.3

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .+.+...+.+|.+.|+++.|+.++++|++|+.|..+++|+++..-..............|...|.|++|.....++++|.
T Consensus        45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~  124 (609)
T KOG4227|consen   45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE  124 (609)
T ss_pred             cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence            34455667899999999999999999999999999999998643221111111112223678999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeeccccCc--cceeEEEecCCCCeEEEeeCCCeEEEEEccCCe-eEEE-eecCCCCceeeEEEcc
Q 019482          132 VDGHLRIMHWPSLRIILDEPKAH--KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTF-LTRNSDEKIELCRFSK  207 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~-~~~~~~~~v~~~~~~~  207 (340)
                      .+++|..-|+++.+.+..+....  +.|..+..+|..+.|++.+.++.|.+||.+..+ .+.. +..........+.|+|
T Consensus       125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP  204 (609)
T ss_pred             CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence            99999999999988776543222  379999999998999999999999999998765 2222 2234445688999999


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcEE-eee---ecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKI-GHK---RLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~---~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  280 (340)
                      ....+    +++....+-+.+||.+..... ...   ...   ......+.|+|+|..+++.-....-.+||+-+..+..
T Consensus       205 ~~P~L----i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V  280 (609)
T KOG4227|consen  205 ETPAL----ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV  280 (609)
T ss_pred             CCcee----EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence            98764    677777888999999875421 111   111   1223567899999999888766667788887765543


Q ss_pred             ccccccc------ccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          281 WSKRLHL------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       281 ~~~~~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .. ..|.      ...+.+++|..|- .+++|+.+-.+++|.++...
T Consensus       281 ~k-~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~  325 (609)
T KOG4227|consen  281 LK-SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAN  325 (609)
T ss_pred             Ee-ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCc
Confidence            22 2221      1357788887654 49999999999999997543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.88  E-value=2.3e-19  Score=155.53  Aligned_cols=250  Identities=23%  Similarity=0.338  Sum_probs=199.6

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEE-ecCCC-eEEEccC-C
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSF-SVDGS-RFAAGGV-D  133 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~-~l~~~~~-d  133 (340)
                      .+..|...+..+.+.+.+..++.++.|+.+.+|+..... ....+....      ...+..+.+ ++++. .++..+. |
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d  133 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH------DSSVSKLALSSPDGNSILLASSSLD  133 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC------CCceeeEEEECCCcceEEeccCCCC
Confidence            466789999999999999999999999999999998876 333332211      135666666 78777 5555444 8


Q ss_pred             CcEEEEeCCC-CceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          134 GHLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       134 g~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      +.+.+|+... ......+..|...|..++|+|+++.+++++. |+.+++|++..+..+..+.. +...+.+++|+|++..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  212 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGL  212 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcce
Confidence            9999999987 6777778888889999999999998888885 99999999998777777765 5567999999999872


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEe-eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE-eeccccccccc
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGT  289 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~  289 (340)
                      .    +++++.|+.+++||...+..+. .+..|.... ...|+|++.++++++.|+.+++|++..... .... ..| ..
T Consensus       213 ~----~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~-~~  285 (466)
T COG2319         213 L----IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGH-SS  285 (466)
T ss_pred             E----EEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecC-Cc
Confidence            1    4445899999999999777776 566666654 338999999999999999999999987664 3333 445 67


Q ss_pred             ceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .+.++.|+|++..+++++.|+.+.+|+.....
T Consensus       286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence            99999999988888889999889999776554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.87  E-value=1e-21  Score=167.92  Aligned_cols=251  Identities=13%  Similarity=0.099  Sum_probs=195.1

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      ..+.+|.+.|+|+.|...|.++++|+.|..++||..++..+.....+       |.+.++.++.+.+..++++++.|..|
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-------hs~ditdlavs~~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-------HSGDITDLAVSSNNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-------CccccchhccchhhhhhhhcccCceE
Confidence            45779999999999999999999999999999999988887666543       88999999999999999999999999


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE---eecCCCCcee------------
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF---LTRNSDEKIE------------  201 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~---~~~~~~~~v~------------  201 (340)
                      ++|.+.++..+..+.+|.+.|++++|+|-.    +.+.||++++||.+-.-.+..   +.......+.            
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence            999999999999999999999999999954    677899999999871100000   0000000111            


Q ss_pred             --------------eEEEccCCCcceE-------EEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC-CCCEE
Q 019482          202 --------------LCRFSKDGTKPFL-------FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYL  259 (340)
Q Consensus       202 --------------~~~~~~~~~~~~~-------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l  259 (340)
                                    .++|....-. |.       ....++-.+..+++|++.++..++.+.+|...+..+.++| +.+..
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~~~li-f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRSNLLI-FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             cccCCcccccchhhHhhhhccceE-EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence                          1111111110 00       0023344566788999999998888999999999999999 45666


Q ss_pred             EEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          260 AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       260 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .+++.||+..|||+-.+.+++....+|  ..+...+||+||..++....-|.++|....-.+
T Consensus       412 msag~dgst~iwdi~eg~pik~y~~gh--~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYFIGH--GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeeeccc--ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            788999999999999998888776665  467788999999999998888999988775444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.86  E-value=8.1e-20  Score=138.37  Aligned_cols=247  Identities=15%  Similarity=0.197  Sum_probs=177.3

Q ss_pred             CCCceeEEeeeeecCCC--ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCe-eeEEEecCCCCeeEEEEcC-CCCe
Q 019482            2 EGGGTVTCGSWIKRPEN--VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPL-VTYVFDESEGDPMTIAVNP-SGDD   77 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~--~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~-~~~~   77 (340)
                      +..+|++.+.|+|+...  -.++|        ++...+++|....+.......-. ....-..+..++++..|+. +-++
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLA--------Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~  165 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLA--------TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL  165 (364)
T ss_pred             CCCCCccceEecCCccccCcchhh--------cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence            56789999999997632  24554        34456999999865443322111 1111234567899999987 5678


Q ss_pred             EEEEecCCCEEEEEecCcee---eeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeeccc--
Q 019482           78 FVCSTTNGGCKLFEVYGGAT---DINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDEP--  151 (340)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~--  151 (340)
                      |.+++-|-+..|||++++..   ..++       +.|..+|..++|...+ +.|++++.||.+++||++..+.-..+.  
T Consensus       166 igtSSiDTTCTiWdie~~~~~~vkTQL-------IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~  238 (364)
T KOG0290|consen  166 IGTSSIDTTCTIWDIETGVSGTVKTQL-------IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED  238 (364)
T ss_pred             eEeecccCeEEEEEEeeccccceeeEE-------EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC
Confidence            88999999999999998632   2222       3488999999999855 478999999999999998765433222  


Q ss_pred             -cCccceeEEEecC-CCCeEEEeeCC-CeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          152 -KAHKSVLDMDFSL-DSEFLATTSTD-GSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       152 -~~~~~i~~~~~~~-~~~~l~~~~~d-~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                       ..+.+...++|++ |-+++|+-..| ..|.|.|++... ++..+. .|.+.|+.++|.|.....    +.++++|.+..
T Consensus       239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~h----ictaGDD~qal  313 (364)
T KOG0290|consen  239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSH----ICTAGDDCQAL  313 (364)
T ss_pred             CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCce----eeecCCcceEE
Confidence             2245788999998 56778776654 579999999754 455555 566789999999987754    78999999999


Q ss_pred             EEECCCCc------EEeeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEE
Q 019482          228 VYDISTWN------KIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICV  270 (340)
Q Consensus       228 i~d~~~~~------~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i  270 (340)
                      +||+.+.-      ++..+. .++.|+.+.|++ .+.+++.+.. +++.+
T Consensus       314 iWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  314 IWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             EEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            99997532      222222 457899999997 5678887754 34443

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.86  E-value=6.4e-20  Score=149.94  Aligned_cols=210  Identities=11%  Similarity=0.083  Sum_probs=162.5

Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  155 (340)
                      +.|+.++.||.+.+.+-. ++......       .|.+.+.+-.|+|||.-|+++++||.|++|. ++|-....+.....
T Consensus        76 d~~~i~s~DGkf~il~k~-~rVE~sv~-------AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~  146 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS-ARVERSIS-------AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE  146 (737)
T ss_pred             ceEEEEcCCceEEEeccc-chhhhhhh-------hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc
Confidence            578889999988888743 33322222       3889999999999999999999999999998 44543334445556


Q ss_pred             ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      +|.|++|.|+.+.++.+. .+.+.|=-+.....+..++ .|++-|.++.|++....     +++++.|-..++||-. |.
T Consensus       147 ~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~l-----I~sgGED~kfKvWD~~-G~  218 (737)
T KOG1524|consen  147 SIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNI-----IASGGEDFRFKIWDAQ-GA  218 (737)
T ss_pred             eeEEEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCccccc-----eeecCCceeEEeeccc-Cc
Confidence            899999999888777765 3577777776665556665 56788999999999987     8999999999999976 55


Q ss_pred             EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  315 (340)
                      .+..-..|+.+|++++|.|+ +.++.++.+ .++            +.... .+.|..++||+||..++.|...|.+.+-
T Consensus       219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R------------~~~p~-~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR------------FSSPR-VGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ccccCChhccceeeeeeccc-cceeeeeee-eee------------ecCCC-ccceEEEEEcCCCceeeccccCceEEEe
Confidence            56666788899999999999 667766643 344            22223 4689999999999999999999887654


Q ss_pred             Ee
Q 019482          316 KL  317 (340)
Q Consensus       316 ~~  317 (340)
                      ..
T Consensus       284 ~~  285 (737)
T KOG1524|consen  284 YA  285 (737)
T ss_pred             ee
Confidence            43

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=9.6e-21  Score=155.38  Aligned_cols=245  Identities=14%  Similarity=0.122  Sum_probs=175.3

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeee---ccccCC
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL---LAKKMP  107 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~~~  107 (340)
                      ++.++.+.+|++......-........++.+|.++|.|++..+++..+++|+-||+|+.|++....-....   ..-...
T Consensus       312 ~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~  391 (577)
T KOG0642|consen  312 ASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGT  391 (577)
T ss_pred             eccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccc
Confidence            45788899999954333333356677899999999999999999999999999999999976522111100   011112


Q ss_pred             CCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc--CccceeEEEecCCC-CeEEEeeCCCeEEEEEcc
Q 019482          108 PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLDMDFSLDS-EFLATTSTDGSARIWKTE  184 (340)
Q Consensus       108 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~  184 (340)
                      ...|.+.|+.+++|+....|++++.||+++.|+...... ..+..  .++....+++-... ...++...-+.--+++++
T Consensus       392 l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  392 LLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             eeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence            235889999999999999999999999999999766554 22222  22334556654322 122222222333334444


Q ss_pred             CCeeEEEeecC------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCE
Q 019482          185 DGVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY  258 (340)
Q Consensus       185 ~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~  258 (340)
                      ..+.+..+...      ....+..+.++|.+..     .+++..|+.|+++|..+++.+.....|...++++++.|+|-+
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~-----~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~  545 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADI-----TFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPY  545 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecCCCCe-----eEecccCCceecccccccccchheeeccceecceeecCCCce
Confidence            44443333211      1134667888888875     788899999999999999999999999999999999999999


Q ss_pred             EEEeeCCCcEEEEeccCceEeec
Q 019482          259 LAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       259 l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      |++++.||.+++|.+....+...
T Consensus       546 l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  546 LMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             EEeecCCceeehhhccchheeec
Confidence            99999999999999876655543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.86  E-value=5.4e-19  Score=135.66  Aligned_cols=254  Identities=15%  Similarity=0.177  Sum_probs=180.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..||+|.+|+++.   ..+|.+.      ..+.+.||+.....     ......+++.|...|++++|+|..+.|++++.
T Consensus        10 ~~pitchAwn~dr---t~iAv~~------~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~   75 (361)
T KOG1523|consen   10 LEPITCHAWNSDR---TQIAVSP------NNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH   75 (361)
T ss_pred             cCceeeeeecCCC---ceEEecc------CCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEccC
Confidence            4689999999954   3455444      45569999886443     24566789999999999999999999999999


Q ss_pred             CCCEEEEEe-cCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee----eccccCcccee
Q 019482           84 NGGCKLFEV-YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII----LDEPKAHKSVL  158 (340)
Q Consensus        84 d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~~~~~~~~i~  158 (340)
                      |..-++|.. ..++....+..     ++++..++++.|+|..+.|++|+....|.||=++..+-=    ..-..+...|.
T Consensus        76 drnayVw~~~~~~~WkptlvL-----lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~  150 (361)
T KOG1523|consen   76 DRNAYVWTQPSGGTWKPTLVL-----LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT  150 (361)
T ss_pred             CCCccccccCCCCeeccceeE-----EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence            999999998 44433222221     237789999999999999999999999999987654321    12234456899


Q ss_pred             EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe
Q 019482          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  238 (340)
                      +++|+|++-+|++|+.|+.++++..-    ++.+....       +=.|-|..                   +.-|+.+.
T Consensus       151 sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekp-------ap~pWgsk-------------------~PFG~lm~  200 (361)
T KOG1523|consen  151 SLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKP-------APTPWGSK-------------------MPFGQLMS  200 (361)
T ss_pred             eeeccCCcceecccccCcceeEEEEe----eeccccCC-------CCCCCccC-------------------CcHHHHHH
Confidence            99999999999999999999999742    22222111       11233332                   11133334


Q ss_pred             eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-EeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       239 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      ++....+.+..+.|+|+|..|+-.+.|..+.+-|..... .+......+  -|..++.|-.+.. ++.++.|
T Consensus       201 E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~-vv~ag~~  269 (361)
T KOG1523|consen  201 EASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENS-VVAAGYD  269 (361)
T ss_pred             hhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCc-eeecCCC
Confidence            444556789999999999999999999999999987664 333332222  4777888865433 4444444

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.85  E-value=8.7e-20  Score=136.37  Aligned_cols=228  Identities=16%  Similarity=0.170  Sum_probs=165.9

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEe-cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee----------
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI----------   99 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~----------   99 (340)
                      +...+.+.+|.+.....        ...++ .|...|+.+.--|+ +.+.+-++|..+.+|++.......          
T Consensus        31 g~~~G~V~~w~lqt~r~--------~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslg  101 (323)
T KOG0322|consen   31 GLSVGIVKMWVLQTERD--------LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLG  101 (323)
T ss_pred             ccccceEEEEEeecCcc--------chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccc
Confidence            34566799999984332        22234 46677888888887 568888999999999987632100          


Q ss_pred             ----eecc-------------c-------------------cCCCCCCCCCeEEEEEec-CCC--eEEEccCCCcEEEEe
Q 019482          100 ----NLLA-------------K-------------------KMPPLQDAGPQKCLSFSV-DGS--RFAAGGVDGHLRIMH  140 (340)
Q Consensus       100 ----~~~~-------------~-------------------~~~~~~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~~~d  140 (340)
                          .+..             +                   ........+.+.|..+.. ++.  ++++|.++|.+.+||
T Consensus       102 FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd  181 (323)
T KOG0322|consen  102 FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD  181 (323)
T ss_pred             cccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEE
Confidence                0000             0                   000011234566666433 233  567888999999999


Q ss_pred             CCCCceee----------ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC--ee--EEEeecCCCCceeeEEEc
Q 019482          141 WPSLRIIL----------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VA--WTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       141 ~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~--~~~~~~~~~~~v~~~~~~  206 (340)
                      +.++..+.          ....|..++.++.+.+.-..=++|+.+..+..|++...  ..  ..++...+ -.+..+...
T Consensus       182 ~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIR  260 (323)
T KOG0322|consen  182 LSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIR  260 (323)
T ss_pred             ccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC-CCccceEEc
Confidence            99874333          34456678999999886666788888889999988643  21  12222223 348889999


Q ss_pred             cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                      ||++.     +++++.|+.|++|..++.+++..++.|...+++++|+|+...+|.++.|++|.+|++
T Consensus       261 pD~KI-----lATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  261 PDGKI-----LATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCcE-----EeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99997     899999999999999999999999999999999999999999999999999999986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=3.3e-19  Score=140.59  Aligned_cols=293  Identities=10%  Similarity=0.028  Sum_probs=205.0

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEE-EecCCCCeeEEEEcCCCCeEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-FDESEGDPMTIAVNPSGDDFVC   80 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~   80 (340)
                      ++.+-|.++.|+.+   .++||+|+.      +-.+.+|.++..-...  .|.+... -..|...|.|++|......+++
T Consensus        54 ~H~GCiNAlqFS~N---~~~L~SGGD------D~~~~~W~~de~~~~k--~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S  122 (609)
T KOG4227|consen   54 EHTGCINALQFSHN---DRFLASGGD------DMHGRVWNVDELMVRK--TPKPIGVMEHPHRSNIFSLEFDLENRFLYS  122 (609)
T ss_pred             hhccccceeeeccC---CeEEeecCC------cceeeeechHHHHhhc--CCCCceeccCccccceEEEEEccCCeeEec
Confidence            46788999999984   578998874      4559999987322211  2222221 2345688999999988899999


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce-ee--ccccCccce
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI-IL--DEPKAHKSV  157 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~--~~~~~~~~i  157 (340)
                      |..+++|.+.|+++.+.+......     ...+.|+.+..+|-.+.|++.+.++.|.+||.+.... ..  .........
T Consensus       123 G~~~~~VI~HDiEt~qsi~V~~~~-----~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F  197 (609)
T KOG4227|consen  123 GERWGTVIKHDIETKQSIYVANEN-----NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF  197 (609)
T ss_pred             CCCcceeEeeecccceeeeeeccc-----CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence            999999999999988765444322     1346899999999888999999999999999986552 11  122233467


Q ss_pred             eEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE-EEee---cCC--CCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          158 LDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW-TFLT---RNS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       158 ~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~---~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      ..+.|+| .-.+|++.+..+-+-+||.+..+.. ....   ...  ...-.++.|+|+|.+     +++--....-.+||
T Consensus       198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q-----~msiRR~~~P~~~D  272 (609)
T KOG4227|consen  198 YTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ-----FMSIRRGKCPLYFD  272 (609)
T ss_pred             eeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe-----ehhhhccCCCEEee
Confidence            8899999 4567888888899999999865431 1111   000  112357889999998     45545555566788


Q ss_pred             CCCCcEEeeeeccC-------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE----------------------eec
Q 019482          231 ISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI----------------------NHW  281 (340)
Q Consensus       231 ~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----------------------~~~  281 (340)
                      +-+..+......|.       ..+.+++|.-|. .+++|+.+=.|++|.+.....                      ...
T Consensus       273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~  351 (609)
T KOG4227|consen  273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT  351 (609)
T ss_pred             eecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence            87755432222222       245667776554 499999999999998753110                      011


Q ss_pred             ccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      ...+| .+-++.+.|+|-..+|++.+-.+.++||.-
T Consensus       352 VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  352 VLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             EEecc-cccccceeecCCcceEeccchhhheecccc
Confidence            23466 468899999999999999999999999953

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=2.4e-20  Score=155.42  Aligned_cols=242  Identities=13%  Similarity=0.159  Sum_probs=170.0

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCC
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  109 (340)
                      ++..+.|.||++...+...  +....-.+  ....|+.+.|.| |...||+++.||.|++|.+..+.........+....
T Consensus       599 ~g~gG~iai~el~~PGrLP--Dgv~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt  674 (1012)
T KOG1445|consen  599 AGSGGVIAIYELNEPGRLP--DGVMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT  674 (1012)
T ss_pred             cCCCceEEEEEcCCCCCCC--cccccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee
Confidence            4566779999997544322  22222222  235699999999 677999999999999999987765554444333334


Q ss_pred             CCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482          110 QDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       110 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  188 (340)
                      .|...|+.+.|+| -.+.|++++.|.+|++||+.+++...++.+|.+.|..++|+|+|+.+++.+.||+|++|+.++++.
T Consensus       675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            5888999999999 567899999999999999999999999999999999999999999999999999999999987654


Q ss_pred             -EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCC-CeeEEEECCCC-CEEEEee
Q 019482          189 -WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRK-PASVLSISLDG-KYLAMGS  263 (340)
Q Consensus       189 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~-~i~~~~~s~~~-~~l~~~~  263 (340)
                       ++.-.+.....-..+.|.-+|+++. ...+......+|.+||..+-.  ++........ .+.--.+.+|. -++++|-
T Consensus       755 pv~Eg~gpvgtRgARi~wacdgr~vi-v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK  833 (1012)
T KOG1445|consen  755 PVYEGKGPVGTRGARILWACDGRIVI-VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK  833 (1012)
T ss_pred             ccccCCCCccCcceeEEEEecCcEEE-EecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecC
Confidence             3333322233445677888998621 112223345678899876533  2222211111 11112344554 4566777


Q ss_pred             CCCcEEEEeccCce
Q 019482          264 KDGDICVVDVKKME  277 (340)
Q Consensus       264 ~dg~i~i~d~~~~~  277 (340)
                      .|..|.+|.+-...
T Consensus       834 GD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  834 GDRFVNMYEVIYES  847 (1012)
T ss_pred             CCceEEEEEecCCC
Confidence            89999999875543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.6e-18  Score=127.18  Aligned_cols=237  Identities=15%  Similarity=0.191  Sum_probs=171.7

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccc---cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK---KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      ..|.+-+++|.+++|++|..+|.|.++.+.+..........   ......|.++++.++|.  ..+|++|+ ||.|+-|.
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence            34667789999999999999999999998753221111111   01123489999999998  33677765 59999997


Q ss_pred             CCCCce------eec--cccCc-----cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEE-c
Q 019482          141 WPSLRI------ILD--EPKAH-----KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF-S  206 (340)
Q Consensus       141 ~~~~~~------~~~--~~~~~-----~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~-~  206 (340)
                      .+....      ...  .+.+.     ..|+++-..|..+-++.++.|+.++-||+++|+...++.+|. ..+.++.- +
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt-DYvH~vv~R~  166 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT-DYVHSVVGRN  166 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc-ceeeeeeecc
Confidence            654322      111  11122     268899999977767777789999999999999999998655 57999888 4


Q ss_pred             cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC----------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----------KPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  276 (340)
                      .+++      +++++.||++++||+++++.+..+...+          ..|-+++  -+..++++|+ ...+.+|.+++.
T Consensus       167 ~~~q------ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrss  237 (325)
T KOG0649|consen  167 ANGQ------ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSS  237 (325)
T ss_pred             cCcc------eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCC
Confidence            4454      8999999999999999999877665432          2344444  4556888775 457999999999


Q ss_pred             eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          277 EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       277 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ++...+.-   ..++..+.|..  ..+++++..+.+.-|.+.
T Consensus       238 e~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  238 ESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             CceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec
Confidence            88776643   35788888865  467777777788888775

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=4.6e-19  Score=152.58  Aligned_cols=220  Identities=18%  Similarity=0.166  Sum_probs=149.2

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CC
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD  133 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d  133 (340)
                      .+..|...+..++|+|||+.|+.++.+   ..|++||+.+++... +..       ..+....++|+|||+.|+.+. .+
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~-------~~g~~~~~~wSPDG~~La~~~~~~  269 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VAS-------FRGHNGAPAFSPDGSRLAFASSKD  269 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-Eec-------CCCccCceeECCCCCEEEEEEecC
Confidence            456678889999999999999987654   369999998765322 111       112334689999999888764 67


Q ss_pred             CcEEEE--eCCCCceeeccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          134 GHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       134 g~i~~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      |.+.+|  |+.+++. ..+..+...+....|+|||+.|+.++ .++...||+++.......... +..  ....|+|+|+
T Consensus       270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~SpDG~  345 (429)
T PRK01742        270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG-GRG--YSAQISADGK  345 (429)
T ss_pred             CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec-CCC--CCccCCCCCC
Confidence            765555  6665553 34445555678899999999877655 578888888754222112222 222  4678999999


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc--CceEeecccccccc
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KMEINHWSKRLHLG  288 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~  288 (340)
                      .     ++..+.++ +.+||+.+++.......  .....+.|+|||++|+.++.++...+|++.  +++..+.+. .| .
T Consensus       346 ~-----ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-~~-~  415 (429)
T PRK01742        346 T-----LVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-GS-D  415 (429)
T ss_pred             E-----EEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-CC-C
Confidence            7     33444444 66699998875422222  233567899999999999999988888763  465555553 34 4


Q ss_pred             cceeeEEEecC
Q 019482          289 TSIALVEFCPT  299 (340)
Q Consensus       289 ~~i~~~~~~~~  299 (340)
                      ..+...+|+|-
T Consensus       416 g~~~~p~wsp~  426 (429)
T PRK01742        416 GQVKFPAWSPY  426 (429)
T ss_pred             CCCCCcccCCC
Confidence            57888999984

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.84  E-value=4e-19  Score=152.92  Aligned_cols=231  Identities=18%  Similarity=0.094  Sum_probs=151.2

Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      +..|.+||.+.... ..+.       .+...+..++|+|||+.|+.++.+   ..|++||+.+++... +.........+
T Consensus       183 ~~~i~i~d~dg~~~-~~lt-------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~  253 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FIVN-------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAP  253 (429)
T ss_pred             eEEEEEECCCCCCc-eEec-------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCce
Confidence            35799999876542 2221       255678999999999999887643   469999998875422 11122234568


Q ss_pred             EecCCCCeEEEee-CCCeEEEE--EccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-E
Q 019482          161 DFSLDSEFLATTS-TDGSARIW--KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-K  236 (340)
Q Consensus       161 ~~~~~~~~l~~~~-~d~~v~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~  236 (340)
                      +|+|||+.|+.++ .+|.+.||  |+.+++. ..+.. +...+....|+|||+.+    ++++..++...+|+++... .
T Consensus       254 ~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i----~f~s~~~g~~~I~~~~~~~~~  327 (429)
T PRK01742        254 AFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSI----LFTSDRSGSPQVYRMSASGGG  327 (429)
T ss_pred             eECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEE----EEEECCCCCceEEEEECCCCC
Confidence            9999999888764 67765555  6555543 44443 34457889999999973    3344456777777764322 1


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ...+ .+..  ....|+|||++|+.++.++ +.+||+.+++...... ..   ...++.|+|||++|+.++.++...+|.
T Consensus       328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-TF---LDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-CC---CCCCceECCCCCEEEEEEcCCCceEEE
Confidence            2222 2322  4578999999999887765 6679998887654322 11   245788999999999999999999888


Q ss_pred             ecCCCCCCCCcccccccccccc
Q 019482          317 LTVPADWKGLSLPLLHSHSQNS  338 (340)
Q Consensus       317 ~~~~~~~~~~~~~~~h~~~v~~  338 (340)
                      +..... +.......|.+.+..
T Consensus       400 ~~~~~G-~~~~~l~~~~g~~~~  420 (429)
T PRK01742        400 LVSADG-RFKARLPGSDGQVKF  420 (429)
T ss_pred             EEECCC-CceEEccCCCCCCCC
Confidence            753222 122223345554443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.84  E-value=8.9e-19  Score=150.23  Aligned_cols=258  Identities=14%  Similarity=0.117  Sum_probs=183.8

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC--CeEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG--DDFV   79 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~   79 (340)
                      +...+|+|+.|+|..+  .+++.|.      .+|.|.+|+......... .+. ......|..++..+.|..+.  .-++
T Consensus       240 ~~~s~v~~~~f~p~~p--~ll~gG~------y~GqV~lWD~~~~~~~~~-s~l-s~~~~sh~~~v~~vvW~~~~~~~~f~  309 (555)
T KOG1587|consen  240 ESPSEVTCLKFCPFDP--NLLAGGC------YNGQVVLWDLRKGSDTPP-SGL-SALEVSHSEPVTAVVWLQNEHNTEFF  309 (555)
T ss_pred             ecCCceeEEEeccCCc--ceEEeec------cCceEEEEEccCCCCCCC-ccc-ccccccCCcCeEEEEEeccCCCCceE
Confidence            3467899999999654  6777666      455699999875544221 122 22345689999999997644  4599


Q ss_pred             EEecCCCEEEEEecCceeeeeecccc-----CCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCC---Cc-----
Q 019482           80 CSTTNGGCKLFEVYGGATDINLLAKK-----MPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPS---LR-----  145 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~---~~-----  145 (340)
                      +++.||.|..|+++.-..........     .........+++++|.+ +...++.|+.+|.|.--+...   ..     
T Consensus       310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~  389 (555)
T KOG1587|consen  310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK  389 (555)
T ss_pred             EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence            99999999999887544322221111     11122346789999988 667899999999887733222   11     


Q ss_pred             eeeccccCccceeEEEecCCCCe-EEEeeCCCeEEEEEcc-CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          146 IILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      ....+..|.++|.++.++|-+.. +++++ |.+++||... ...++..+... ...+++++|||....+    +++...+
T Consensus       390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~-~~~v~~vaWSptrpav----F~~~d~~  463 (555)
T KOG1587|consen  390 GHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSS-PDYVTDVAWSPTRPAV----FATVDGD  463 (555)
T ss_pred             ccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhc-cceeeeeEEcCcCceE----EEEEcCC
Confidence            12234456679999999996654 45554 9999999987 55666666543 3469999999998753    5777889


Q ss_pred             ceEEEEECCCC--cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          224 ALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       224 ~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      |.|.+||+...  .++..........+.+.|+++|+.|++|...|.+++|++..
T Consensus       464 G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  464 GNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            99999999754  34445555566678889999999999999999999999964

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=4.7e-18  Score=146.67  Aligned_cols=270  Identities=17%  Similarity=0.167  Sum_probs=190.9

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCc-e--eeeeeccccCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-A--TDINLLAKKMPPL  109 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-~--~~~~~~~~~~~~~  109 (340)
                      .+..+.+|.....+...    .....-..|...+++.++||.++++|++..||.|.+|.-... .  .......      
T Consensus       179 ~~~~~~~~~v~~~~~~~----~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH------  248 (792)
T KOG1963|consen  179 HMCKIHIYFVPKHTKHT----SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH------  248 (792)
T ss_pred             EeeeEEEEEecccceee----ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE------
Confidence            34456777766433111    111112346777999999999999999999999999975441 1  1111111      


Q ss_pred             CCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          110 QDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       110 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      =|..+|.+++|+++|.+|++|+..+.+.+|.+.+++ .+-++.-..+|..+.++||+.+.+....|+.|.+-...+....
T Consensus       249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k  327 (792)
T KOG1963|consen  249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK  327 (792)
T ss_pred             ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence            167899999999999999999999999999999988 4446666679999999999999999999999999887654443


Q ss_pred             EEeec----------CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-----------CCCee
Q 019482          190 TFLTR----------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-----------RKPAS  248 (340)
Q Consensus       190 ~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~~i~  248 (340)
                      .++.+          ...+-.+.++++|..+.     ++..+..+.|.+||+-+.+.+..+...           .-.++
T Consensus       328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~-----~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it  402 (792)
T KOG1963|consen  328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNS-----LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT  402 (792)
T ss_pred             hhccCccCCCccccccccccceeEEEcCCCCc-----eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence            33321          12334667888885444     678889999999999887766554321           12467


Q ss_pred             EEEECCCCCEEEEee--------CC--CcEEEEeccC----ceEeecccccccccceeeEEE-ecCCe-EEEEEecCCcE
Q 019482          249 VLSISLDGKYLAMGS--------KD--GDICVVDVKK----MEINHWSKRLHLGTSIALVEF-CPTQR-VVLTASKEWGA  312 (340)
Q Consensus       249 ~~~~s~~~~~l~~~~--------~d--g~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~-~~~~~-~l~~~~~dg~i  312 (340)
                      +++.+..|.+++++-        .|  -.+++|-...    ......+...|. ..+...++ ++... ..++++.||.+
T Consensus       403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~-~~~vat~~~~~~rs~~~vta~~dg~~  481 (792)
T KOG1963|consen  403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG-NAFVATIFLNPTRSVRCVTASVDGDF  481 (792)
T ss_pred             eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC-ceeEEEEEecCcccceeEEeccCCeE
Confidence            778888899999873        23  3578896644    334444556674 44444444 44433 79999999999


Q ss_pred             EEEEecC
Q 019482          313 MITKLTV  319 (340)
Q Consensus       313 ~iw~~~~  319 (340)
                      +||-+..
T Consensus       482 KiW~~~~  488 (792)
T KOG1963|consen  482 KIWVFTD  488 (792)
T ss_pred             EEEEEec
Confidence            9999943

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.5e-18  Score=151.08  Aligned_cols=292  Identities=12%  Similarity=0.158  Sum_probs=193.5

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec---CCCCeeEEEEcC--CCCeEEEE
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNP--SGDDFVCS   81 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~--~~~~l~~~   81 (340)
                      -..+.|+|-.+  .+++       +.....|.+|+++.... +       ..+..   -...|+.+.+-.  |...+++|
T Consensus      1067 pk~~~~hpf~p--~i~~-------ad~r~~i~vwd~e~~~~-l-------~~F~n~~~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1067 PKTLKFHPFEP--QIAA-------ADDRERIRVWDWEKGRL-L-------NGFDNGAFPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred             CceeeecCCCc--eeEE-------cCCcceEEEEecccCce-e-------ccccCCCCCCCccceeeeecccchhheeee
Confidence            34566666432  4455       33455699999974322 1       11111   234588888865  44588999


Q ss_pred             ecCCCEEEEEecCce-eeeeeccc----cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-
Q 019482           82 TTNGGCKLFEVYGGA-TDINLLAK----KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-  155 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~-~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-  155 (340)
                      +.||.|+||+-.... ...++...    ........+.-.-+.|.....+|++++.-..|+|||......+..++...+ 
T Consensus      1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred             ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence            999999999864332 11111110    000000111114567877655666666678999999988777766655443 


Q ss_pred             ceeEEEecC-CCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCc--eeeEEEccCCCcceEEEEEecCCcceEEEE
Q 019482          156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEK--IELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (340)
Q Consensus       156 ~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  229 (340)
                      .++++.-+. .|+.+++|-.||.|++||.+...+   +.... .|...  |..+.+.+.|-.-    +++++.+|.|++|
T Consensus      1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~e----lvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGE----LVSGSQDGDIQLL 1284 (1387)
T ss_pred             cceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcc----eeeeccCCeEEEE
Confidence            577776654 578999999999999999986433   33333 33334  8888888866432    7999999999999


Q ss_pred             ECCCCcEEeeee--cc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc----cccccccceeeEEEecCC
Q 019482          230 DISTWNKIGHKR--LL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS----KRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       230 d~~~~~~~~~~~--~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~i~~~~~~~~~  300 (340)
                      |++.......+.  .+   ++..+++..+++...+|+|+. +.|+||++...+.....    ..+.....+.+++|+|--
T Consensus      1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred             ecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchh
Confidence            999843222222  11   235899999999999999998 99999998654332111    111123578999999999


Q ss_pred             eEEEEEecCCcEEEEEecCCC
Q 019482          301 RVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      -++|+|+.|..|.||....+.
T Consensus      1364 ~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1364 LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             HhhhhccCCceEEEeecCCcC
Confidence            999999999999999987654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=2.4e-19  Score=150.40  Aligned_cols=231  Identities=15%  Similarity=0.183  Sum_probs=179.2

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      .|+.++|-|||..|+.+..+. +.+||...+.....+..       |...|+|++|+.||+.+++|+.|..|.+|+-.- 
T Consensus        14 ci~d~afkPDGsqL~lAAg~r-lliyD~ndG~llqtLKg-------HKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSR-LLVYDTSDGTLLQPLKG-------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-   84 (1081)
T ss_pred             chheeEECCCCceEEEecCCE-EEEEeCCCccccccccc-------ccceEEEEEEccCCceeccCCCceeEEEecccc-
Confidence            799999999999998887776 99999999887666654       889999999999999999999999999998542 


Q ss_pred             ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      +-+.++ .|.+.|.|+.|+|-...|++++- ...-+|........+ .  .....+.+++|..||++     ++.+-.+|
T Consensus        85 EG~LkY-SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~--kss~R~~~CsWtnDGqy-----lalG~~nG  154 (1081)
T KOG1538|consen   85 EGILKY-SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-H--KSSSRIICCSWTNDGQY-----LALGMFNG  154 (1081)
T ss_pred             cceeee-ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-h--hhheeEEEeeecCCCcE-----EEEeccCc
Confidence            333333 57789999999999999999985 357788876543322 2  23456899999999998     78888899


Q ss_pred             eEEEEECCCCcEEeeee---ccCCCeeEEEECCCC-----CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482          225 LLAVYDISTWNKIGHKR---LLRKPASVLSISLDG-----KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                      +|.+-+-. +++...+.   +.+.+|.+++|+|..     ..+++.....++.+|.+.....-..-..   +....++++
T Consensus       155 TIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L---~FdP~CisY  230 (1081)
T KOG1538|consen  155 TISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL---NFDPCCISY  230 (1081)
T ss_pred             eEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC---CCCchhhee
Confidence            99988644 33322333   356799999999953     5788888888899998865433322111   335678899


Q ss_pred             ecCCeEEEEEecCCcEEEEEec
Q 019482          297 CPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .++|.+++.|+.|+.++++.-+
T Consensus       231 f~NGEy~LiGGsdk~L~~fTR~  252 (1081)
T KOG1538|consen  231 FTNGEYILLGGSDKQLSLFTRD  252 (1081)
T ss_pred             ccCCcEEEEccCCCceEEEeec
Confidence            9999999999999999888654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=6.2e-18  Score=132.04  Aligned_cols=289  Identities=16%  Similarity=0.181  Sum_probs=183.6

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEEecCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNG   85 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~   85 (340)
                      +.-++|++.-.  .+++       +..|..|++|+-..+..     ..+.   ......|++++|-|. +..|+.|+..|
T Consensus       101 lr~~aWhqH~~--~fav-------a~nddvVriy~ksst~p-----t~Lk---s~sQrnvtclawRPlsaselavgCr~g  163 (445)
T KOG2139|consen  101 LRGVAWHQHII--AFAV-------ATNDDVVRIYDKSSTCP-----TKLK---SVSQRNVTCLAWRPLSASELAVGCRAG  163 (445)
T ss_pred             eeeEeechhhh--hhhh-------hccCcEEEEeccCCCCC-----ceec---chhhcceeEEEeccCCcceeeeeecce
Confidence            45678998322  2333       44677799997653211     1111   123567999999994 46788888888


Q ss_pred             CEEEEEecCceeeeee----ccccCCCC--CCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeeccccCcccee
Q 019482           86 GCKLFEVYGGATDINL----LAKKMPPL--QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKAHKSVL  158 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~----~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~~~~i~  158 (340)
                       |.+|...........    .....+.+  +...+|++++|.+||..+++++. |..|.|||..++..+.-.....+.+.
T Consensus       164 -IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s  242 (445)
T KOG2139|consen  164 -ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS  242 (445)
T ss_pred             -eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence             999987643221111    11111111  23478999999999999998875 57899999999887765545556889


Q ss_pred             EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC----
Q 019482          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----  234 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----  234 (340)
                      -+.|+||+.+|+.+.-|+..++|+..+.......... .+.|....|+|+|+.++    ++.+...  ++|.+...    
T Consensus       243 lLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLL----f~~sgsp--~lysl~f~~~~~  315 (445)
T KOG2139|consen  243 LLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLL----FACSGSP--RLYSLTFDGEDS  315 (445)
T ss_pred             eEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEE----EEEcCCc--eEEEEeecCCCc
Confidence            9999999999999999999999965543332233222 34799999999999743    2222222  22222110    


Q ss_pred             --------cE---Eee---------eeccCCCeeEEEECCCCCEEEEeeCC--------CcEEEEeccCceEeeccccc-
Q 019482          235 --------NK---IGH---------KRLLRKPASVLSISLDGKYLAMGSKD--------GDICVVDVKKMEINHWSKRL-  285 (340)
Q Consensus       235 --------~~---~~~---------~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~-  285 (340)
                              +.   +..         .+...+++.+++|.|.|.+|++.-..        ..|.+||.+..-+.....-+ 
T Consensus       316 ~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~  395 (445)
T KOG2139|consen  316 VFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGM  395 (445)
T ss_pred             cccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccc
Confidence                    00   000         01124678899999999999997553        34777887665443332111 


Q ss_pred             ccccceeeEEEec---CCeEEEEEecCCcEEEEEecCC
Q 019482          286 HLGTSIALVEFCP---TQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       286 ~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ..+.+..-+.|+|   ++.+|..+=..|.+.-|.+...
T Consensus       396 i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~  433 (445)
T KOG2139|consen  396 IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQ  433 (445)
T ss_pred             ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEEE
Confidence            1122355666766   5677777767788887777543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.84  E-value=3.2e-17  Score=137.02  Aligned_cols=246  Identities=12%  Similarity=0.139  Sum_probs=155.3

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-C
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-N   84 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d   84 (340)
                      ....++++|+   .+++..+..     .++.|.+|+++.+. .+.    ..... .....+..++|+|+++++++++. +
T Consensus        36 ~~~~l~~spd---~~~lyv~~~-----~~~~i~~~~~~~~g-~l~----~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~~  101 (330)
T PRK11028         36 QVQPMVISPD---KRHLYVGVR-----PEFRVLSYRIADDG-ALT----FAAES-PLPGSPTHISTDHQGRFLFSASYNA  101 (330)
T ss_pred             CCccEEECCC---CCEEEEEEC-----CCCcEEEEEECCCC-ceE----Eeeee-cCCCCceEEEECCCCCEEEEEEcCC
Confidence            3556777774   344443332     35668889987322 111    11111 12335778999999998888764 6


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceeec-----c-ccCccce
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILD-----E-PKAHKSV  157 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~-----~-~~~~~~i  157 (340)
                      +.|.+|+++..........    ...+...+.+++++|++++++++ ..++.|.+||+.+...+..     . .......
T Consensus       102 ~~v~v~~~~~~g~~~~~~~----~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p  177 (330)
T PRK11028        102 NCVSVSPLDKDGIPVAPIQ----IIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP  177 (330)
T ss_pred             CeEEEEEECCCCCCCCcee----eccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCC
Confidence            8899999974322111111    11223456788999999988654 4568999999976332211     0 0112346


Q ss_pred             eEEEecCCCCeEEEeeC-CCeEEEEEccC--Ce--eEEEeecC-----CCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          158 LDMDFSLDSEFLATTST-DGSARIWKTED--GV--AWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~-d~~v~iwd~~~--~~--~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                      ..+.|+|++++++++.. +++|.+|+++.  ++  .+..+...     .......+.++|+++++    .++...++.|.
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l----yv~~~~~~~I~  253 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL----YACDRTASLIS  253 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE----EEecCCCCeEE
Confidence            78999999999888775 89999999973  22  23333211     11123358899999973    23335578999


Q ss_pred             EEECCCCc----EEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEecc
Q 019482          228 VYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVK  274 (340)
Q Consensus       228 i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~  274 (340)
                      +|++....    .+..... ......+.++|+|++|++++. ++.|.+|++.
T Consensus       254 v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        254 VFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            99986543    1222222 234567899999999998876 8899999874

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=1.7e-17  Score=127.40  Aligned_cols=241  Identities=14%  Similarity=0.166  Sum_probs=171.1

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCC------CcEEE
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVD------GHLRI  138 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d------g~i~~  138 (340)
                      ...++|+.|..-+++|..+| .+||+.+.-+.......       +.+.+.-+...-..++|+. |+.+      ..|.|
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~-------~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF-------IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc-------ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEE
Confidence            45599999999999999999 99999876322111100       1111111111112334443 3322      46999


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEcc-CCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      ||=....++..+ ....+|.++.+.++  .|++.- ++.|++|... +.+.+..+.... .+---++..|.....++  .
T Consensus        80 WDD~k~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~-NPkGlC~~~~~~~k~~L--a  152 (346)
T KOG2111|consen   80 WDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRS-NPKGLCSLCPTSNKSLL--A  152 (346)
T ss_pred             EecccCcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeeccc-CCCceEeecCCCCceEE--E
Confidence            994444444433 55678999999865  455554 6899999987 555555554322 12224455555443332  3


Q ss_pred             EecCCcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCCc-EEEEeccCceEeecccccccccceeeE
Q 019482          218 VQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKMEINHWSKRLHLGTSIALV  294 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~i~~~  294 (340)
                      .-+-.-|+|.+-|+...+.  ...+..|...|.+++++.+|..+|+++..|+ |||||..++..++.+..+.....|.++
T Consensus       153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i  232 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI  232 (346)
T ss_pred             cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence            4555679999999987665  4678899999999999999999999999996 899999999999998877766789999


Q ss_pred             EEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          295 EFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       295 ~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +|||+..+|+++|+-|+++|+.+....
T Consensus       233 aFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  233 AFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            999999999999999999999998654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=3.4e-19  Score=141.54  Aligned_cols=195  Identities=20%  Similarity=0.201  Sum_probs=150.8

Q ss_pred             eEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (340)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  146 (340)
                      .+++|+++|..+++++.||.+|+|+..+........       .|...|.++.|+|||++|++.+.| ..+||+.+++..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-------~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-------AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-------hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence            468999999999999999999999976655443332       378999999999999999999999 899999999976


Q ss_pred             eeccccC--ccceeEEEecCCC---Ce--EEEeeCCCeEEEEEccCCee-----EEEeecCCCCceeeEEEccCCCcceE
Q 019482          147 ILDEPKA--HKSVLDMDFSLDS---EF--LATTSTDGSARIWKTEDGVA-----WTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       147 ~~~~~~~--~~~i~~~~~~~~~---~~--l~~~~~d~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      +......  ......+.|+.|+   .+  ++....-+.|+.|++.....     ..+.. ...+.|.+++.+++|+.   
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf---  295 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKF---  295 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcE---
Confidence            6555422  2357778888776   33  33333456677776643211     11111 12346999999999997   


Q ss_pred             EEEEecCCcceEEEEECCCCcEEeee-eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          215 FCTVQRGDKALLAVYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                        ++.++.||.|.+++..+.+.++.. +.|..-|+.+.|+||.+++++.+.|....+..+.-
T Consensus       296 --~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  296 --LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             --EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence              788999999999999998876554 56788999999999999999999999999887754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.82  E-value=1e-16  Score=133.85  Aligned_cols=268  Identities=13%  Similarity=0.141  Sum_probs=169.8

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (340)
                      .++.+.+.+.+        +......+......-..+.|+|||+++++++.||.|.++|+.+.+...++..        .
T Consensus        14 ~~~~v~viD~~--------t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--------G   77 (369)
T PF02239_consen   14 GSGSVAVIDGA--------TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--------G   77 (369)
T ss_dssp             GGTEEEEEETT--------T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---------S
T ss_pred             CCCEEEEEECC--------CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--------C
Confidence            45668887765        4444455655444344578999999999999999999999999987766643        2


Q ss_pred             CCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCceeeccccC-------ccceeEEEecCCCCeEEEeeC-CCeEEEEEc
Q 019482          113 GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTST-DGSARIWKT  183 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~  183 (340)
                      ....++++++||++++++. ..+.+.++|.++.+.+..+...       ...+..+..+|....++..-. .+.|.+.|.
T Consensus        78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy  157 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDY  157 (369)
T ss_dssp             SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEET
T ss_pred             CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEe
Confidence            4568899999999998775 5799999999999887765432       235677888888876655554 488888887


Q ss_pred             cCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE--------------------------
Q 019482          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--------------------------  237 (340)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--------------------------  237 (340)
                      ...+.+..-............|+|+++++    +++....+.|.++|..+++.+                          
T Consensus       158 ~d~~~~~~~~i~~g~~~~D~~~dpdgry~----~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw  233 (369)
T PF02239_consen  158 SDPKNLKVTTIKVGRFPHDGGFDPDGRYF----LVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW  233 (369)
T ss_dssp             TTSSCEEEEEEE--TTEEEEEE-TTSSEE----EEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred             ccccccceeeecccccccccccCccccee----eecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence            76654433222334567889999999873    233344556777776654332                          


Q ss_pred             -----------------------------eeeeccCCCeeEEEECCCCCEEEEe----eCCCcEEEEeccCceEeecccc
Q 019482          238 -----------------------------GHKRLLRKPASVLSISLDGKYLAMG----SKDGDICVVDVKKMEINHWSKR  284 (340)
Q Consensus       238 -----------------------------~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~  284 (340)
                                                   +.+.....+ ..+..+|+++++.+.    ...+.|.++|.++.+....+..
T Consensus       234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~  312 (369)
T PF02239_consen  234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP  312 (369)
T ss_dssp             EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred             eeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence                                         222222223 456779999999988    4458999999999988777653


Q ss_pred             cccccceeeEEEecCCeEEEEEecC--CcEEEEEecCCCC
Q 019482          285 LHLGTSIALVEFCPTQRVVLTASKE--WGAMITKLTVPAD  322 (340)
Q Consensus       285 ~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~  322 (340)
                      .. +..+..+.|++||+.+..+..+  +.|.|+|-..-+.
T Consensus       313 ~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  313 GP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             HH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             cC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            33 3459999999999866555544  3699999765443

...

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4.8e-17  Score=140.53  Aligned_cols=294  Identities=13%  Similarity=0.058  Sum_probs=200.3

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCC-CCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDP-KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      +..+++|.+++|   ..+++|.|.      .+|+|.+|.--. ..     .......+.-|.+.|++++|+++|.+|++|
T Consensus       204 Htf~~t~~~~sp---n~~~~Aa~d------~dGrI~vw~d~~~~~-----~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG  269 (792)
T KOG1963|consen  204 HTFNITCVALSP---NERYLAAGD------SDGRILVWRDFGSSD-----DSETCTLLHWHHDEVNSLSFSSDGAYLLSG  269 (792)
T ss_pred             hcccceeEEecc---ccceEEEec------cCCcEEEEecccccc-----ccccceEEEecccccceeEEecCCceEeec
Confidence            455689999999   445677666      567799996432 11     222335577899999999999999999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc---------
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK---------  152 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---------  152 (340)
                      +..+.+.+|.+.+++  .+++.      +-.++|..+.++||+.+.+....|..|.+....+.+....+.+         
T Consensus       270 G~E~VLv~Wq~~T~~--kqfLP------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k  341 (792)
T KOG1963|consen  270 GREGVLVLWQLETGK--KQFLP------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK  341 (792)
T ss_pred             ccceEEEEEeecCCC--ccccc------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence            999999999999887  34433      2458999999999999999999999999998765443322211         


Q ss_pred             --CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec----CCC------CceeeEEEccCCCcceEEEE---
Q 019482          153 --AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----NSD------EKIELCRFSKDGTKPFLFCT---  217 (340)
Q Consensus       153 --~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~------~~v~~~~~~~~~~~~~~~~~---  217 (340)
                        ..+-.+.++++|.-+.++-.+..+.|.+||+-+.+.+..+..    ..+      -.++.++.+..|.++...-.   
T Consensus       342 ~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d  421 (792)
T KOG1963|consen  342 TRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARID  421 (792)
T ss_pred             ccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeeh
Confidence              122367788999777788888999999999988777665541    111      13556666666664211100   


Q ss_pred             --EecCCcceEEEEECCCCcE----Ee-eeeccCCCeeEEEECC-C-CCEEEEeeCCCcEEEEeccCceEee--------
Q 019482          218 --VQRGDKALLAVYDISTWNK----IG-HKRLLRKPASVLSISL-D-GKYLAMGSKDGDICVVDVKKMEINH--------  280 (340)
Q Consensus       218 --~~~~~d~~i~i~d~~~~~~----~~-~~~~~~~~i~~~~~s~-~-~~~l~~~~~dg~i~i~d~~~~~~~~--------  280 (340)
                        ......-.+++|-......    .. ....|+..+...++.+ . ...+++++.||.+++|-+...+.+.        
T Consensus       422 ~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c  501 (792)
T KOG1963|consen  422 KFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTC  501 (792)
T ss_pred             hhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEE
Confidence              0011234678887654332    11 1234554444444433 2 3378999999999999884432211        


Q ss_pred             -cccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          281 -WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       281 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                       .+...| ..++++++|+.||. +++.+.|+.|.+|+...+
T Consensus       502 ~~i~sy~-k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  502 KAIGSYH-KTPITALCFSQDGS-LLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             eeeeccc-cCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence             111223 57899999999996 555667889999999874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=9.9e-19  Score=138.21  Aligned_cols=195  Identities=14%  Similarity=0.195  Sum_probs=146.0

Q ss_pred             CCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeee--eccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           63 EGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDIN--LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        63 ~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      ..+|..+.|.++.. .+++|+.|..|++|.+........  ...-......|...|+++.|+|+|+.|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35799999998766 999999999999999976543321  111111223588999999999999999999999999999


Q ss_pred             eCC--------C--------CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeE
Q 019482          140 HWP--------S--------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (340)
Q Consensus       140 d~~--------~--------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~  203 (340)
                      -..        +        ........+|.+.|..++|+|+++++++++.|.++++||+..|+....+. .|...+..+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgv  171 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGV  171 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccccccee
Confidence            765        2        11223345677789999999999999999999999999999999988776 455689999


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-------------------ccC----CCeeEEEECCCCCEEE
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------------------LLR----KPASVLSISLDGKYLA  260 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-------------------~~~----~~i~~~~~s~~~~~l~  260 (340)
                      +|.|-+++     +++-+.|...+.+.+...+.+....                   .|+    .-...++|+|+|.+++
T Consensus       172 awDpl~qy-----v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv  246 (434)
T KOG1009|consen  172 AWDPLNQY-----VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV  246 (434)
T ss_pred             ecchhhhh-----hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence            99999987     6666777766666655433221111                   011    1234678999999998


Q ss_pred             Eee
Q 019482          261 MGS  263 (340)
Q Consensus       261 ~~~  263 (340)
                      +..
T Consensus       247 tPa  249 (434)
T KOG1009|consen  247 TPA  249 (434)
T ss_pred             ccc
Confidence            864

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.81  E-value=4.2e-16  Score=122.19  Aligned_cols=278  Identities=15%  Similarity=0.150  Sum_probs=194.2

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC-
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-   84 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-   84 (340)
                      .+....|+.   +..++..|...+       .++|+.++.......        ....-.|.-+-|+  ..++|..+.+ 
T Consensus         7 ti~~~~~Nq---d~~~lsvGs~~G-------yk~~~~~~~~k~~~~--------~~~~~~IvEmLFS--SSLvaiV~~~q   66 (391)
T KOG2110|consen    7 TINFIGFNQ---DSTLLSVGSKDG-------YKIFSCSPFEKCFSK--------DTEGVSIVEMLFS--SSLVAIVSIKQ   66 (391)
T ss_pred             ceeeeeecc---ceeEEEccCCCc-------eeEEecCchHHhhcc--------cCCCeEEEEeecc--cceeEEEecCC
Confidence            455666776   556777666544       788888755431110        0011224455565  4456655544 


Q ss_pred             -CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC---ccceeEE
Q 019482           85 -GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA---HKSVLDM  160 (340)
Q Consensus        85 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~i~~~  160 (340)
                       +.+++.+++....+..+.        -..+|.++.++.+  .|+++-++ .|+|||+++.+.+..+..-   ...+.++
T Consensus        67 pr~Lkv~~~Kk~~~ICe~~--------fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~Al  135 (391)
T KOG2110|consen   67 PRKLKVVHFKKKTTICEIF--------FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCAL  135 (391)
T ss_pred             CceEEEEEcccCceEEEEe--------cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEee
Confidence             458899988776555443        3368899999754  56666554 4999999999887766543   3357777


Q ss_pred             EecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce-EEEEECCCCcEE
Q 019482          161 DFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTWNKI  237 (340)
Q Consensus       161 ~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~  237 (340)
                      .+++.+.+++.-+  ..|.|.+||..+-+++..+. .|++.+.+++|+++|..     ++++++.|+ ||++.+.+++.+
T Consensus       136 S~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~l-----lATASeKGTVIRVf~v~~G~kl  209 (391)
T KOG2110|consen  136 SPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTL-----LATASEKGTVIRVFSVPEGQKL  209 (391)
T ss_pred             ccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCE-----EEEeccCceEEEEEEcCCccEe
Confidence            7777777888643  46899999999999988887 56789999999999997     788887775 799999999999


Q ss_pred             eeeeccC--CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc------------------------c--------
Q 019482          238 GHKRLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS------------------------K--------  283 (340)
Q Consensus       238 ~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------~--------  283 (340)
                      .+++...  ..|.+++|+|++++|++.+..++|++|.+........-                        .        
T Consensus       210 ~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~  289 (391)
T KOG2110|consen  210 YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRK  289 (391)
T ss_pred             eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccc
Confidence            8887654  46789999999999999999999999988653210000                        0        


Q ss_pred             --c--cccccceeeEEEe--cCCeEEEEEecCCcEEEEEecCC
Q 019482          284 --R--LHLGTSIALVEFC--PTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       284 --~--~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                        .  ......-..+.+.  +....+..++.||.++.|.++..
T Consensus       290 FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  290 FATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK  332 (391)
T ss_pred             eeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence              0  0001111334444  46788999999999999999875

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.81  E-value=1.5e-19  Score=145.23  Aligned_cols=235  Identities=12%  Similarity=0.117  Sum_probs=194.1

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      +...+.+.++.+|++|+.|+..|.+-.+|..+......+.        -...|.++.|..+.+++|++ ....++||| .
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--------v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~  198 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--------VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-N  198 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee--------hhhhhhhhhhhcchHHHHhh-hhceEEEec-C
Confidence            4457789999999999999999999999999888765553        23578899999888777776 567899999 5


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (340)
                      .|..+..+.. +..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+.... +.+..++-+|-+..     +-.|..
T Consensus       199 ~GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~-G~~~vm~qNP~NaV-----ih~Ghs  271 (545)
T KOG1272|consen  199 NGTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA-GRTDVMKQNPYNAV-----IHLGHS  271 (545)
T ss_pred             CCcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC-CccchhhcCCccce-----EEEcCC
Confidence            5676666644 4578999999999899999999999999999999998887543 56778888887764     678889


Q ss_pred             cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV  302 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  302 (340)
                      .|+|.+|.....+++..+-.|.++|.++++.++|+|+++.+.|..++|||++....+..+...   .+...+++|..|  
T Consensus       272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg--  346 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG--  346 (545)
T ss_pred             CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc--
Confidence            999999999999999999999999999999999999999999999999999998877665542   368888998766  


Q ss_pred             EEEEecCCcEEEEEecC
Q 019482          303 VLTASKEWGAMITKLTV  319 (340)
Q Consensus       303 l~~~~~dg~i~iw~~~~  319 (340)
                      ++++|....+.||.=..
T Consensus       347 lLA~~~G~~v~iw~d~~  363 (545)
T KOG1272|consen  347 LLALSYGDHVQIWKDAL  363 (545)
T ss_pred             ceeeecCCeeeeehhhh
Confidence            33444445789996443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=4.5e-19  Score=145.46  Aligned_cols=218  Identities=10%  Similarity=0.065  Sum_probs=163.0

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV  132 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  132 (340)
                      .+.+|.||++.|++++|+.+|.+|++|+.|-.+.|||....+....+.+      .|...|.+++|-|  +.+.+++|..
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T------gHtaNIFsvKFvP~tnnriv~sgAg  115 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST------GHTANIFSVKFVPYTNNRIVLSGAG  115 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec------ccccceeEEeeeccCCCeEEEeccC
Confidence            4567899999999999999999999999999999999987666555543      4889999999999  5568999999


Q ss_pred             CCcEEEEeCCCC----------ceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEE-------Eeec
Q 019482          133 DGHLRIMHWPSL----------RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWT-------FLTR  194 (340)
Q Consensus       133 dg~i~~~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~-------~~~~  194 (340)
                      |..|+++|+...          +.......|...|..++-.|++ +.+.+++.||+++-+|++....-.       .+..
T Consensus       116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence            999999999742          2233445667788889999988 789999999999999998632211       1100


Q ss_pred             --CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC--------c----------EEeeee-cc----C-----
Q 019482          195 --NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--------N----------KIGHKR-LL----R-----  244 (340)
Q Consensus       195 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--------~----------~~~~~~-~~----~-----  244 (340)
                        ..--...++..+|...+.    ++.|+.|-..++||.+..        .          ++..+. .|    .     
T Consensus       196 y~~~lielk~ltisp~rp~~----laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~  271 (758)
T KOG1310|consen  196 YNPQLIELKCLTISPSRPYY----LAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDR  271 (758)
T ss_pred             hchhhheeeeeeecCCCCce----EEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccc
Confidence              011246789999988863    788999999999995421        1          111111 11    0     


Q ss_pred             --CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          245 --KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       245 --~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                        ..++-++|+|+|..|++.-....|+++|+..++....+
T Consensus       272 ~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  272 YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence              12566889999988887766668999999887655443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1e-17  Score=129.75  Aligned_cols=232  Identities=12%  Similarity=0.145  Sum_probs=169.0

Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCceeecc--c
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDE--P  151 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~  151 (340)
                      ..+|++..+|.|++||..+++....+..       +...+..++|..  .+..+.+++.||+|++||++.......+  .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~-------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKG-------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecC-------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence            5788899999999999999877666654       445667788876  4678999999999999999976654333  2


Q ss_pred             cCc-cceeEEEecCCCCeEEEee----CCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          152 KAH-KSVLDMDFSLDSEFLATTS----TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       152 ~~~-~~i~~~~~~~~~~~l~~~~----~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      ++. .+..+++.+..++.+++|.    .|-.|.+||+|..+. +..+...|...|++++|+|....+    +++++.||.
T Consensus       114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl----LlSGSvDGL  189 (376)
T KOG1188|consen  114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL----LLSGSVDGL  189 (376)
T ss_pred             CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe----EEeecccce
Confidence            333 3667777776778888876    467899999998777 777777777889999999998764    799999999


Q ss_pred             EEEEECCCCcE---EeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccccccc----------cce
Q 019482          226 LAVYDISTWNK---IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLG----------TSI  291 (340)
Q Consensus       226 i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----------~~i  291 (340)
                      +.+||+.....   +.....+...|..+.|..++ +.|.+-+..+...+|+++.+.....+......          ..+
T Consensus       190 vnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  190 VNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             EEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            99999986542   22334456679999998876 56888888999999999988765544322110          122


Q ss_pred             eeEEEecCCeEEEEEec-CCcEEEEEec
Q 019482          292 ALVEFCPTQRVVLTASK-EWGAMITKLT  318 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~-dg~i~iw~~~  318 (340)
                      .......++...+.++. -+...++-+.
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~  297 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLV  297 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEee
Confidence            22222224455555555 5677777665

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.81  E-value=1.1e-18  Score=142.93  Aligned_cols=234  Identities=17%  Similarity=0.180  Sum_probs=160.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccc-cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      |...+.++.|+.....+.+++.+..+.-||+............ ..++..|..+ .+..=-.....|+.++.||.+.+.+
T Consensus        13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~-rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGG-RSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccc-cccCCCCCcceEEEEcCCceEEEec
Confidence            5666779999877666665555554444454433322111111 1111112100 0000011234788888999999987


Q ss_pred             CCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                       +.++.......|.+.+.+-.|+|||.-|++++.||.|++|. ++|....++. ....+|+|++|.|+...+    +++ 
T Consensus        92 -k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~S~~v----l~c-  163 (737)
T KOG1524|consen   92 -KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPNSNSI----VFC-  163 (737)
T ss_pred             -ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCCCCce----EEe-
Confidence             55666666777888999999999999999999999999998 4565544443 345689999999999863    232 


Q ss_pred             CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                       ..+.+.+=.+.....+-..+.|++-|.++.|+|..+.+++|++|-..++||.........  ..| ..+|++++|+|+ 
T Consensus       164 -~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~-ey~ITSva~npd-  238 (737)
T KOG1524|consen  164 -QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAE-EYAITSVAFNPE-  238 (737)
T ss_pred             -cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chh-ccceeeeeeccc-
Confidence             244566666666666667899999999999999999999999999999999765444332  344 579999999999 


Q ss_pred             eEEEEEecC
Q 019482          301 RVVLTASKE  309 (340)
Q Consensus       301 ~~l~~~~~d  309 (340)
                      ..++.+|..
T Consensus       239 ~~~~v~S~n  247 (737)
T KOG1524|consen  239 KDYLLWSYN  247 (737)
T ss_pred             cceeeeeee
Confidence            667777654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.79  E-value=2.2e-16  Score=135.77  Aligned_cols=222  Identities=19%  Similarity=0.164  Sum_probs=146.0

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEec---CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCC
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDG  134 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg  134 (340)
                      +..+...+...+|+|||+.|+..+.   +..+.+|++.+++... +..       ..+.+..+.|+|||+.|+.. +.+|
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~-------~~~~~~~~~~SPDG~~La~~~~~~g  265 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-------FPRHNGAPAFSPDGSKLAFALSKTG  265 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccC-------CCCCcCCeEECCCCCEEEEEEcCCC
Confidence            3446678999999999999986543   3468999988765322 111       12334568999999988764 4444


Q ss_pred             --cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC-C--eEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-G--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       135 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                        .|++||+++++... +..+...+....|+|||+.|+..+.+ +  .|+++|+.+++.. .+.. .........|+|||
T Consensus       266 ~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~SpDG  342 (429)
T PRK03629        266 SLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDG  342 (429)
T ss_pred             CcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCccCEEECCCC
Confidence              58899998876543 33444567889999999988877654 4  4555566665443 3332 22345678999999


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCc---EEEEeccCceEeecccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD---ICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~  286 (340)
                      +.+++  .........|.+||+.+++.. .+.. ........|+|||++|+.++.++.   +.++++..... ..+. .+
T Consensus       343 ~~Ia~--~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~-~~l~-~~  416 (429)
T PRK03629        343 KFMVM--VSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLP-AT  416 (429)
T ss_pred             CEEEE--EEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe-EECc-cC
Confidence            97422  111223456899999887643 2322 223446789999999999887764   67777754433 3332 34


Q ss_pred             cccceeeEEEec
Q 019482          287 LGTSIALVEFCP  298 (340)
Q Consensus       287 ~~~~i~~~~~~~  298 (340)
                       ...+...+|+|
T Consensus       417 -~~~~~~p~Wsp  427 (429)
T PRK03629        417 -DGQVKFPAWSP  427 (429)
T ss_pred             -CCCcCCcccCC
Confidence             45788889987

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.79  E-value=3.1e-17  Score=146.38  Aligned_cols=270  Identities=11%  Similarity=0.056  Sum_probs=185.4

Q ss_pred             CcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCe
Q 019482           48 SVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR  126 (340)
Q Consensus        48 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  126 (340)
                      .....+.....+..|...|..++.++.. .++++|+.||+|++|+...-...................+.++...+.++.
T Consensus      1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            3334566777888999999999988754 899999999999999997543221111000101114578899999999999


Q ss_pred             EEEccCCCcEEEEeCCCCc-------eeeccccCc-cc-eeEEEecC-CCC-eEEEeeCCCeEEEEEccCCeeEEEeec-
Q 019482          127 FAAGGVDGHLRIMHWPSLR-------IILDEPKAH-KS-VLDMDFSL-DSE-FLATTSTDGSARIWKTEDGVAWTFLTR-  194 (340)
Q Consensus       127 l~~~~~dg~i~~~d~~~~~-------~~~~~~~~~-~~-i~~~~~~~-~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~-  194 (340)
                      +|+++.||.|++.+++..+       +......+. +. +..-+|.. .+. .++.+..-+.|..||++.......++. 
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            9999999999999987521       111111111 22 33334433 333 678888889999999998766555442 


Q ss_pred             CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCC---CCEEEEee--CCCcE
Q 019482          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLD---GKYLAMGS--KDGDI  268 (340)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~---~~~l~~~~--~dg~i  268 (340)
                      ...+.|++++.+|.+.+     ++.|+..|.+.+||+|-+.++.... .+..++..+..+|-   ....++++  ..+.|
T Consensus      1193 ~~hG~vTSi~idp~~~W-----lviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNW-----LVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred             ccccceeEEEecCCceE-----EEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCce
Confidence            22367999999999997     7899999999999999888776543 33467888877763   34555544  46789


Q ss_pred             EEEeccCceEeecccccc-----------------cccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          269 CVVDVKKMEINHWSKRLH-----------------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      .+|++.++.....+....                 ..-......+..-+..+.+|+.|..|+.||...|..
T Consensus      1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            999999876554432220                 001222334444457899999999999999987753

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=6.2e-17  Score=142.51  Aligned_cols=246  Identities=17%  Similarity=0.154  Sum_probs=180.0

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ....+.|+|-...++++...-.|++||.+.++....+....    .....|+.+.+-.  |..++++|+.||.|+||+--
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~----~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA----FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC----CCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            46678899988999998877789999999888766554432    2346788888866  45689999999999999632


Q ss_pred             -CC----ceeecccc-------CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC-C
Q 019482          143 -SL----RIILDEPK-------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD-G  209 (340)
Q Consensus       143 -~~----~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~  209 (340)
                       +.    +.+....+       ..+.-.-++|.....+|++++.-..|+|||....+....+....+..++++.-+-. |
T Consensus      1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred             ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence             21    22211111       11112446787766666666667899999999888888887666666777655543 3


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCc---EEeeeeccCCC--eeEEEECCCCC-EEEEeeCCCcEEEEeccCceEeeccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRLLRKP--ASVLSISLDGK-YLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      ..     +++|..||.+++||.+...   .+...+.|...  |..+.+.+.|- .|++|+.||.|++||++.......+.
T Consensus      1222 n~-----i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~ 1296 (1387)
T KOG1517|consen 1222 NI-----IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLT 1296 (1387)
T ss_pred             ce-----EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccce
Confidence            44     7888999999999998654   35566777765  99999998764 59999999999999999842222111


Q ss_pred             -cccc--ccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          284 -RLHL--GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       284 -~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                       ..|.  ++..+++..++....+|+|+. +.|+||++.-.
T Consensus      1297 iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1297 IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence             1121  335899999999999999998 99999999744

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.79  E-value=2e-17  Score=135.47  Aligned_cols=243  Identities=16%  Similarity=0.207  Sum_probs=171.1

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE-----ecCCCeEEEccCCCcEEEEe
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-----SVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~~~d  140 (340)
                      +....++-.|++|+..-.+ .+++|+...+......+.+...   ......|-.|     .|++--++.|-.-|.|.+.|
T Consensus       126 ~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y---~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  126 VTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREY---KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID  201 (636)
T ss_pred             eeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcc---cCCCCceecccccccCCCCcceEEeeccCceEEec
Confidence            3344444566777655443 3899998864332222221111   1122334444     34566788888889999998


Q ss_pred             CCCCceeecccc-----CccceeEEEecC-CCCeEEEeeCCCeEEEEEccC--------------Ce-------------
Q 019482          141 WPSLRIILDEPK-----AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED--------------GV-------------  187 (340)
Q Consensus       141 ~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~--------------~~-------------  187 (340)
                      ....+ +.++..     ....++++.|-| +...++.+-.+|.+++||...              +.             
T Consensus       202 p~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~r  280 (636)
T KOG2394|consen  202 PINFE-VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTR  280 (636)
T ss_pred             chhhH-HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccC
Confidence            76532 222111     124799999999 445677777899999997632              11             


Q ss_pred             -eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC
Q 019482          188 -AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (340)
Q Consensus       188 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  266 (340)
                       ++..+.. ..+.|...+|+|||++     +++.+.|+.++|||..+.+.+..++..-+...|++|||||+||++|++|.
T Consensus       281 NPv~~w~~-~~g~in~f~FS~DG~~-----LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD  354 (636)
T KOG2394|consen  281 NPVARWHI-GEGSINEFAFSPDGKY-----LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD  354 (636)
T ss_pred             CccceeEe-ccccccceeEcCCCce-----EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence             1111111 1246889999999998     89999999999999999887777777778899999999999999999999


Q ss_pred             cEEEEeccCceEeecccccccccceeeEEEecC-----------------------------------------------
Q 019482          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----------------------------------------------  299 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------------------------------------------  299 (340)
                      .|.||.+...+++..- ++| .+.|..++|.|-                                               
T Consensus       355 LVtVwSf~erRVVARG-qGH-kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~  432 (636)
T KOG2394|consen  355 LVTVWSFEERRVVARG-QGH-KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINS  432 (636)
T ss_pred             eEEEEEeccceEEEec-ccc-ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccc
Confidence            9999999999988765 577 579999999830                                               


Q ss_pred             -CeEEEEEecCCcEEEEEecCCC
Q 019482          300 -QRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       300 -~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                       .-.|.+.+.|-.+.+||+....
T Consensus       433 v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  433 VTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             eEEEeecccccceEEEEecchhh
Confidence             1247788899999999998654

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.79  E-value=1.3e-17  Score=128.10  Aligned_cols=202  Identities=18%  Similarity=0.205  Sum_probs=161.1

Q ss_pred             CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc---eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-e
Q 019482          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-V  187 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~  187 (340)
                      ..+|+|.+|++|+..++.+.....|.||.....+   ....+..|...|+.++|+|..+.|++|+.|..-++|....+ +
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            3689999999999999999999999999887554   56677788889999999999999999999999999998433 2


Q ss_pred             --eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEEEE
Q 019482          188 --AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAM  261 (340)
Q Consensus       188 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~  261 (340)
                        +...+.. .+...+++.|+|.++.     +++++....|.+|-+...+.    ....+.+...|++++|+|++-++++
T Consensus        90 WkptlvLlR-iNrAAt~V~WsP~enk-----FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   90 WKPTLVLLR-INRAATCVKWSPKENK-----FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             eccceeEEE-eccceeeEeecCcCce-----EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence              3333332 4467999999999987     78888889999888765432    2233445678999999999999999


Q ss_pred             eeCCCcEEEEeccC------------------ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          262 GSKDGDICVVDVKK------------------MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       262 ~~~dg~i~i~d~~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      |+.|+..++|..--                  |+.+....  ..++.+..+.|+|+|..|+-.+.|..+.+=|-..|.
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            99999999996421                  11111111  225689999999999999999999999998887775

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=5.8e-17  Score=127.80  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=168.1

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCe-EEEccCC--CcEEE
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVD--GHLRI  138 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~~  138 (340)
                      ....|..+... +| .|++|-.+|.+++|..+.+.......    ........+..+.-++...+ +++|+..  ..+.+
T Consensus       104 ~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l----~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  104 GTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKL----IKLATGPGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             ccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccc----eeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence            45566666654 33 67788889999999998544211110    01112356677777775554 5558888  78999


Q ss_pred             EeCCCCceeeccccCcc---------ceeEEEecCC--CCeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEc
Q 019482          139 MHWPSLRIILDEPKAHK---------SVLDMDFSLD--SEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~---------~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~  206 (340)
                      ||+++.+.+..-.....         .++++.|-+.  ...|++++.-+.+++||.+.+ +++..+.. ...+++++...
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~  256 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLT  256 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeec
Confidence            99998876655433221         4678889886  788999999999999999865 45555553 35689999999


Q ss_pred             cCCCcceEEEEEecCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          207 KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                      |.++.     ++++..-+.+..||++.++.... +.+..+.++++..+|.++++++++-|..|||+|+++.+++..... 
T Consensus       257 p~gn~-----Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-  330 (412)
T KOG3881|consen  257 PSGNF-----IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-  330 (412)
T ss_pred             CCCcE-----EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-
Confidence            99997     78888899999999999998766 788889999999999999999999999999999999777765432 


Q ss_pred             ccccceeeEEEecC
Q 019482          286 HLGTSIALVEFCPT  299 (340)
Q Consensus       286 ~~~~~i~~~~~~~~  299 (340)
                        ...++.+-+.++
T Consensus       331 --Ks~lt~il~~~~  342 (412)
T KOG3881|consen  331 --KSRLTFILLRDD  342 (412)
T ss_pred             --hccccEEEecCC
Confidence              456777777654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=3e-16  Score=140.16  Aligned_cols=305  Identities=12%  Similarity=0.094  Sum_probs=205.7

Q ss_pred             CCCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEE
Q 019482            1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (340)
Q Consensus         1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   80 (340)
                      +|+...|..++-++..  ..++++|+      .|++|++|+........ .....+.++..-...+.++.+.+.++.+|+
T Consensus      1045 ~Ehs~~v~k~a~s~~~--~s~FvsgS------~DGtVKvW~~~k~~~~~-~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEH--TSLFVSGS------DDGTVKVWNLRKLEGEG-GSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             hhccccccceeecCCC--CceEEEec------CCceEEEeeehhhhcCc-ceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            4566666666666643  36777776      56669999987543332 133344445545678999999999999999


Q ss_pred             EecCCCEEEEEecCceeeeee-ccccCCCCCCCCCe-EEEEEec-CCC-eEEEccCCCcEEEEeCCCCceeecc--ccCc
Q 019482           81 STTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQ-KCLSFSV-DGS-RFAAGGVDGHLRIMHWPSLRIILDE--PKAH  154 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v-~~~~~~~-~~~-~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~  154 (340)
                      ++.||.|++.+++..+..... ...........+.+ ..-+|.. .+. .++.+..-+.|..||++........  ...+
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence            999999999999863221111 11111111222333 3444443 233 7788888899999999877655443  3445


Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC-CcceEEEEECCC
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDIST  233 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~  233 (340)
                      +.|++++.+|.+++++.|+..|.+.+||++=+.++..+......++..+..+|-..+--.. +.++. ..+.|.+|++.+
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~-vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS-VSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE-EEecccCCCceeeeeccc
Confidence            6899999999999999999999999999999999988887677788888888765421111 33333 688999999998


Q ss_pred             CcEEeeeecc-CC------------------CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe---------------
Q 019482          234 WNKIGHKRLL-RK------------------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---------------  279 (340)
Q Consensus       234 ~~~~~~~~~~-~~------------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---------------  279 (340)
                      +.....+... +.                  ......+...+.++.+|+.|..|+.||....+..               
T Consensus      1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~ 1354 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNS 1354 (1431)
T ss_pred             CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccc
Confidence            8655444433 10                  1112233334568899999999999997542211               


Q ss_pred             --------------ec-------------------c-------cccccccceeeEEEecCC-eEEEEEecCCcEEEEE
Q 019482          280 --------------HW-------------------S-------KRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITK  316 (340)
Q Consensus       280 --------------~~-------------------~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~  316 (340)
                                    ..                   .       ...| ..+|+++++.... .+|++++.||.|+||.
T Consensus      1355 ~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H-~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1355 ESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYH-HDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             hhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccc-cchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                          00                   0       0123 3578888886544 6899999999999994

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=5.7e-16  Score=133.18  Aligned_cols=206  Identities=15%  Similarity=0.075  Sum_probs=138.7

Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc---CCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|.++|.+..... .+.       .+...+...+|+|||+.|+..+   .+..|.+|++.+++... +...........|
T Consensus       180 ~l~~~d~dg~~~~-~lt-------~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~  250 (429)
T PRK03629        180 ELRVSDYDGYNQF-VVH-------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAF  250 (429)
T ss_pred             eEEEEcCCCCCCE-Eee-------cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEE
Confidence            6888888765432 221       1446789999999999888654   24579999998876432 2222334557899


Q ss_pred             cCCCCeEEEe-eCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCcEE
Q 019482          163 SLDSEFLATT-STDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKI  237 (340)
Q Consensus       163 ~~~~~~l~~~-~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~  237 (340)
                      +|||+.|+.. +.++  .|++||+++++... +... ...+....|+|||+.+    +++...++  .|.++|+.+++..
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~-~~~~~~~~wSPDG~~I----~f~s~~~g~~~Iy~~d~~~g~~~  324 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDG-RSNNTEPTWFPDSQNL----AYTSDQAGRPQVYKVNINGGAPQ  324 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCC-CCCcCceEECCCCCEE----EEEeCCCCCceEEEEECCCCCeE
Confidence            9999988765 3344  58999998876543 3322 2357889999999973    22223333  5666677766543


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                       .+...........|+|||++|+..+.+   ..|.+||+.+++..... ..   .......|+|||++|+.++.++.
T Consensus       325 -~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-~~---~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        325 -RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-DT---FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             -EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-CC---CCCCCceECCCCCEEEEEEcCCC
Confidence             333344455678999999999886543   35888999888754432 21   23456789999999999998865

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.78  E-value=1.9e-14  Score=120.41  Aligned_cols=275  Identities=16%  Similarity=0.199  Sum_probs=178.1

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec----CCCEEEEEecCc-eeeeeeccccCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----NGGCKLFEVYGG-ATDINLLAKKMP  107 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----d~~i~iw~~~~~-~~~~~~~~~~~~  107 (340)
                      ..+.|..|.++.....+..  .  ... .-......++++|++++|.+...    ++.|..|++... .....+....  
T Consensus        11 ~~~gI~~~~~d~~~g~l~~--~--~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~--   83 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTL--V--QTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP--   83 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEE--E--EEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE--
T ss_pred             CCCcEEEEEEcCCCCCceE--e--eee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec--
Confidence            4567999999766655422  1  111 13456778999999999998876    468999998875 1111111111  


Q ss_pred             CCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCC-ceeec--cc-----------cCccceeEEEecCCCCeEEEe
Q 019482          108 PLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSL-RIILD--EP-----------KAHKSVLDMDFSLDSEFLATT  172 (340)
Q Consensus       108 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~-~~~~~--~~-----------~~~~~i~~~~~~~~~~~l~~~  172 (340)
                        ........++++|++++|+++. .+|.|.++++... .....  ..           .......++.++|+++++++.
T Consensus        84 --~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   84 --SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             --ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             --cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence              0234556799999999988876 4899999999863 22211  11           112357889999999988876


Q ss_pred             eC-CCeEEEEEccCCe--e--EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--CCcE--Eeeeecc
Q 019482          173 ST-DGSARIWKTEDGV--A--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNK--IGHKRLL  243 (340)
Q Consensus       173 ~~-d~~v~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~~~  243 (340)
                      .. ...|.+|++....  .  ...+........+.+.|+|+++++|    +....++.|.++++.  ++..  +......
T Consensus       162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Y----v~~e~s~~v~v~~~~~~~g~~~~~~~~~~~  237 (345)
T PF10282_consen  162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAY----VVNELSNTVSVFDYDPSDGSLTEIQTISTL  237 (345)
T ss_dssp             ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEE----EEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred             ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEE----EecCCCCcEEEEeecccCCceeEEEEeeec
Confidence            53 3589999997654  2  2233334445689999999999743    455678889999988  4432  2222211


Q ss_pred             ------CCCeeEEEECCCCCEEEEeeC-CCcEEEEecc--CceEeecccccccccceeeEEEecCCeEEEEEe-cCCcEE
Q 019482          244 ------RKPASVLSISLDGKYLAMGSK-DGDICVVDVK--KMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAM  313 (340)
Q Consensus       244 ------~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  313 (340)
                            ......+.++|||++|+++.. .+.|.+|++.  +++....-.....+...+.++++|+|++|+++. .++.|.
T Consensus       238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~  317 (345)
T PF10282_consen  238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS  317 (345)
T ss_dssp             ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred             cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence                  125678999999999988764 5689999993  233222111111134589999999999988776 567999


Q ss_pred             EEEecCC
Q 019482          314 ITKLTVP  320 (340)
Q Consensus       314 iw~~~~~  320 (340)
                      +|+++..
T Consensus       318 vf~~d~~  324 (345)
T PF10282_consen  318 VFDIDPD  324 (345)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999743

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=4.3e-16  Score=134.72  Aligned_cols=222  Identities=12%  Similarity=0.080  Sum_probs=147.9

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEec---CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCC
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVD  133 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d  133 (340)
                      .+..|...+...+|+|||+.|+..+.   +..|.+||+.+++.. .+.       ...+.+...+|+|||+.|+ +.+.+
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-------~~~g~~~~~~~SPDG~~la~~~~~~  267 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-------NFPGMTFAPRFSPDGRKVVMSLSQG  267 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-------cCCCcccCcEECCCCCEEEEEEecC
Confidence            35567888999999999999887764   358999999877542 221       1335667889999999775 44555


Q ss_pred             Cc--EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482          134 GH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (340)
Q Consensus       134 g~--i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (340)
                      +.  |++||+.+++.. .+..+........|+|||+.|+..+. ++  .|+++|+..++.. .+... ...+....|+|+
T Consensus       268 g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~Spd  344 (435)
T PRK05137        268 GNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWSPR  344 (435)
T ss_pred             CCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEECCC
Confidence            54  777898877653 34444445677899999998887763 33  6888888765543 33322 334677899999


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC------CcEEEEeccCceEeecc
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD------GDICVVDVKKMEINHWS  282 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~  282 (340)
                      |+.+++  ......+..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+.+      ..+.++|+..+.... +
T Consensus       345 G~~ia~--~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~-l  419 (435)
T PRK05137        345 GDLIAF--TKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE-V  419 (435)
T ss_pred             CCEEEE--EEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE-c
Confidence            997432  11122335788999865543 2232 22346778999999998876543      258888887665533 2


Q ss_pred             cccccccceeeEEEec
Q 019482          283 KRLHLGTSIALVEFCP  298 (340)
Q Consensus       283 ~~~~~~~~i~~~~~~~  298 (340)
                      ..   ...+...+|+|
T Consensus       420 ~~---~~~~~~p~Wsp  432 (435)
T PRK05137        420 PT---PGDASDPAWSP  432 (435)
T ss_pred             cC---CCCccCcccCC
Confidence            21   23466777876

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.78  E-value=6.8e-17  Score=122.88  Aligned_cols=152  Identities=20%  Similarity=0.277  Sum_probs=113.1

Q ss_pred             eEEEecCCCCeEEEeeC----------CCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482          158 LDMDFSLDSEFLATTST----------DGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~----------d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (340)
                      ..+.|+|+|++|+.-..          -+...+|.++. +.....+.....++|.+++|+|+|+.+.   ++.+..+..|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~fa---vi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFA---VIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEE---EEEccCCccc
Confidence            45889999987665432          13455666533 3344555444456799999999999732   3455667899


Q ss_pred             EEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC---CCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (340)
Q Consensus       227 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  303 (340)
                      .+||++ ++.+..+  ....++.+.|+|+|++|++++.   .|.|.+||.++.+.+....  |  ..++.++|+|||++|
T Consensus        86 ~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~--~~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   86 TLYDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H--SDATDVEWSPDGRYL  158 (194)
T ss_pred             EEEcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--c--CcEEEEEEcCCCCEE
Confidence            999997 5555444  3567889999999999999874   4679999999888877653  3  357899999999999


Q ss_pred             EEEec------CCcEEEEEecC
Q 019482          304 LTASK------EWGAMITKLTV  319 (340)
Q Consensus       304 ~~~~~------dg~i~iw~~~~  319 (340)
                      +++..      |+.++||++.-
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEeccceeccccEEEEEecC
Confidence            98875      78899999863

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.2e-16  Score=124.89  Aligned_cols=231  Identities=16%  Similarity=0.183  Sum_probs=160.0

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~  142 (340)
                      -.+..++|++.-..+|++..|-.|++|+-.. .....+..      .....|.|++|-|. ++.|+.|+..| |.+|...
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPlsaselavgCr~g-IciW~~s  170 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDS  170 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCCcceeeeeecce-eEEEEcC
Confidence            4578899999777788999999999999766 32222221      13468999999994 45777777654 8999764


Q ss_pred             CCce--------------eeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482          143 SLRI--------------ILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       143 ~~~~--------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (340)
                      ....              +.+. ..+..|+++.|++||..+++++. |..|.|||..+++.+.-... ..+.+.-+.|||
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~-pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSP  248 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQD-PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSP  248 (445)
T ss_pred             cccccccccccccccchhheeC-CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcC
Confidence            2111              1111 12358999999999999999884 67899999998877655432 335688999999


Q ss_pred             CCCcceEEEEEecCCcceEEEEEC-CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce---------
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDI-STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---------  277 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------  277 (340)
                      |+.+     ++++.-|+..++|.. +++..... ....+.|....|+|+|++|+.+.. |.-++|.+.-.+         
T Consensus       249 dgd~-----lfaAt~davfrlw~e~q~wt~erw-~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~  321 (445)
T KOG2139|consen  249 DGDV-----LFAATCDAVFRLWQENQSWTKERW-ILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQ  321 (445)
T ss_pred             CCCE-----EEEecccceeeeehhcccceecce-eccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcc
Confidence            9998     788888999999954 44444433 334458999999999998776653 334455442110         


Q ss_pred             ------Eeecc-----ccc--ccccceeeEEEecCCeEEEEEecCCc
Q 019482          278 ------INHWS-----KRL--HLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       278 ------~~~~~-----~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                            ++..+     ..+  -..+++.+++|.|.|.+||+.-+.+.
T Consensus       322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  322 SIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             cceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence                  00000     000  01357899999999999998876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.77  E-value=5.2e-17  Score=133.11  Aligned_cols=174  Identities=20%  Similarity=0.262  Sum_probs=133.4

Q ss_pred             cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCC-------
Q 019482           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPS-------  143 (340)
Q Consensus        72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~-------  143 (340)
                      .|.+--++.|-..|.+++.|....+. .++..+..  ......|+|+.|-|. ...++++..+|.+++||.+-       
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~-sklfne~r--~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p  258 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEV-SKLFNEER--LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP  258 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHH-HHhhhhcc--cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence            34666788888889999999876332 22222111  124478999999994 44667777899999997531       


Q ss_pred             -------Cc--------------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceee
Q 019482          144 -------LR--------------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (340)
Q Consensus       144 -------~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~  202 (340)
                             +.              ++....-....|..++|+|||++||+.+.||.+||||..+.+.+..++.-. +...|
T Consensus       259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-GGLLC  337 (636)
T KOG2394|consen  259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-GGLLC  337 (636)
T ss_pred             cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-cceEE
Confidence                   00              011111123468899999999999999999999999999888776666444 46899


Q ss_pred             EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC
Q 019482          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL  254 (340)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~  254 (340)
                      ++|||||++     +++++.|..|.||.+...+.+..-.+|+.+|..++|.|
T Consensus       338 vcWSPDGKy-----IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  338 VCWSPDGKY-----IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEcCCccE-----EEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            999999998     89999999999999999999999999999999999983

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.7e-17  Score=134.29  Aligned_cols=289  Identities=14%  Similarity=0.124  Sum_probs=211.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC--CCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~   80 (340)
                      +.+-|..+.|+.   .+.++++|+      .+..+.+|++......+       ....+|...|....|-|.  ...+++
T Consensus       141 H~GcVntV~FN~---~Gd~l~SgS------DD~~vv~WdW~~~~~~l-------~f~SGH~~NvfQaKFiP~s~d~ti~~  204 (559)
T KOG1334|consen  141 HKGCVNTVHFNQ---RGDVLASGS------DDLQVVVWDWVSGSPKL-------SFESGHCNNVFQAKFIPFSGDRTIVT  204 (559)
T ss_pred             CCCccceeeecc---cCceeeccC------ccceEEeehhhccCccc-------ccccccccchhhhhccCCCCCcCcee
Confidence            457788888888   445777666      55669999997443322       224579889998889883  458999


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccc--c-Ccc-
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEP--K-AHK-  155 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~-~~~-  155 (340)
                      ++.||.+++=.+..........    ...+|.++|.-++.-|+ ...|.+++.|+.+.-+|++++.....+.  . ... 
T Consensus       205 ~s~dgqvr~s~i~~t~~~e~t~----rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~  280 (559)
T KOG1334|consen  205 SSRDGQVRVSEILETGYVENTK----RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE  280 (559)
T ss_pred             ccccCceeeeeeccccceecce----ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence            9999999998776544332221    12248899999999995 4578999999999999998765432222  1 222 


Q ss_pred             --ceeEEEecCC-CCeEEEeeCCCeEEEEEccCCee------EEEeec-----CCCCceeeEEEccCCCcceEEEEEecC
Q 019482          156 --SVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVA------WTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       156 --~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                        ....++.+|. ...+++++.|..+++||.+.-..      +..+..     .....|++++|+.++..     ++++.
T Consensus       281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-----lLaSY  355 (559)
T KOG1334|consen  281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-----LLASY  355 (559)
T ss_pred             ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-----eeeee
Confidence              5678999994 45899999999999999875221      222222     22346899999988776     67778


Q ss_pred             CcceEEEEECCC--C----------cEEe-eeeccCC--CeeEEE-ECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          222 DKALLAVYDIST--W----------NKIG-HKRLLRK--PASVLS-ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       222 ~d~~i~i~d~~~--~----------~~~~-~~~~~~~--~i~~~~-~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                      .|-.|+++.-.-  +          ..+. .+++|..  .|..+- |-|...|+++|+.-|.|.||+-.+++.++.+...
T Consensus       356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD  435 (559)
T KOG1334|consen  356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD  435 (559)
T ss_pred             cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence            888899995432  1          1112 2556643  355554 4688999999999999999999999999888655


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ++  .|+++.=+|--..||+.|-|..|+||.-.
T Consensus       436 r~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  436 RH--VVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             cc--eEeccCCCCCCchhhccCCccceeeecCC
Confidence            52  89999999999999999999999999863

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=2.2e-16  Score=124.58  Aligned_cols=250  Identities=15%  Similarity=0.160  Sum_probs=181.9

Q ss_pred             CCCCeeEEEEcCCCC--eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           62 SEGDPMTIAVNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        62 h~~~v~~~~~~~~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      ....|..++|.-+++  .+...+.+..+..+.+............. ...-...+|..++.. |+ .|++|-.+|.+.+|
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~-~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK-TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVR  130 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccc-ccccccccccchhhc-CC-EEEEEecCCcEEEE
Confidence            345688888876554  45555466667777766555433321100 011134566666654 34 67777889999999


Q ss_pred             eCCCCc----eeeccccCccceeEEEecCCCC-eEEEeeCC--CeEEEEEccCCeeEEEeecCC--------CCceeeEE
Q 019482          140 HWPSLR----IILDEPKAHKSVLDMDFSLDSE-FLATTSTD--GSARIWKTEDGVAWTFLTRNS--------DEKIELCR  204 (340)
Q Consensus       140 d~~~~~----~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d--~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~  204 (340)
                      ..+.+.    ....+ .-..++..+.-++... ++++|+..  ..+.+||+++.+++.+-+...        .-.++++.
T Consensus       131 ~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~  209 (412)
T KOG3881|consen  131 HDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR  209 (412)
T ss_pred             eccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence            987433    22222 2234677777777544 56668888  889999999886655433211        12567888


Q ss_pred             EccC--CCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          205 FSKD--GTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       205 ~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      |.+.  ...     +++++.-+++++||.+.++ ++..+.....+++++...|+++++++|..-+.+..||+++++.+..
T Consensus       210 Fl~g~~~~~-----fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  210 FLEGSPNYK-----FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             ecCCCCCce-----EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            8887  443     7889999999999999764 7778888889999999999999999999999999999999998877


Q ss_pred             ccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          282 SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ...+- .+.|+++..+|..++++++|-|..++|+|++...
T Consensus       285 ~~kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk  323 (412)
T KOG3881|consen  285 GLKGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK  323 (412)
T ss_pred             ccCCc-cCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence            54555 5789999999999999999999999999998744

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=2.8e-18  Score=138.05  Aligned_cols=197  Identities=16%  Similarity=0.222  Sum_probs=171.3

Q ss_pred             CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee
Q 019482          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  193 (340)
                      ..+.+.++.+|++|+.|+..|.|..+|..++.....+ .....|.++.|-.+.+++|++- ...++||| ..|..+..+.
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei-~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk  207 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI-NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLK  207 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeee-ehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehh
Confidence            4467899999999999999999999999998866544 3456899999998888888774 67899999 4688888887


Q ss_pred             cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                      .+  ..+..+.|.|-.-.     +++++..|.++.-|+.+|+.+..+....+.+..+.-+|-+..+-+|..+|+|.+|..
T Consensus       208 ~~--~~v~rLeFLPyHfL-----L~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP  280 (545)
T KOG1272|consen  208 RH--IRVARLEFLPYHFL-----LVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP  280 (545)
T ss_pred             hc--Cchhhhcccchhhe-----eeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC
Confidence            44  35899999997643     788999999999999999999999888899999999999999999999999999999


Q ss_pred             cCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      .+.+++..+. .| .++|.++++.++|++++|+|.|..++|||+..-..
T Consensus       281 ~skePLvKiL-cH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q  327 (545)
T KOG1272|consen  281 NSKEPLVKIL-CH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ  327 (545)
T ss_pred             CCcchHHHHH-hc-CCCcceEEECCCCcEEeecccccceeEeeeccccc
Confidence            9998887763 56 57999999999999999999999999999986553

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=8.8e-16  Score=132.59  Aligned_cols=222  Identities=18%  Similarity=0.167  Sum_probs=144.6

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCC
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDG  134 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg  134 (340)
                      +..|...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +..       ..+...+.+|+|||+.|+ +.+.+|
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~-------~~g~~~~~~~SpDG~~l~~~~s~~g  270 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VAS-------FRGINGAPSFSPDGRRLALTLSRDG  270 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-ecc-------CCCCccCceECCCCCEEEEEEeCCC
Confidence            44567789999999999999987643   469999998765422 111       223445789999999775 444454


Q ss_pred             --cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CCe--EEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       135 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                        .|++||+.+++.. .+..+.......+|+|||+.|+.++. ++.  |+++|+.+++... +... ......++|+|+|
T Consensus       271 ~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~SpDG  347 (433)
T PRK04922        271 NPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSPDG  347 (433)
T ss_pred             CceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECCCC
Confidence              5999999887644 34444444567899999998887763 444  6667776665433 3222 2335578999999


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~  286 (340)
                      +.+++.  ...+....|.+||+.+++.. .+. +........|+|||++++..+.+   +.|.++++..+.. ..+. .+
T Consensus       348 ~~Ia~~--~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~-~~l~-~~  421 (433)
T PRK04922        348 KKIAMV--HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR-QRLV-SA  421 (433)
T ss_pred             CEEEEE--ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce-EEcc-cC
Confidence            974221  11122347999999887754 332 22234567999999998877653   4588888865443 3332 12


Q ss_pred             cccceeeEEEec
Q 019482          287 LGTSIALVEFCP  298 (340)
Q Consensus       287 ~~~~i~~~~~~~  298 (340)
                       ...+...+|+|
T Consensus       422 -~g~~~~p~wsp  432 (433)
T PRK04922        422 -DGEVREPAWSP  432 (433)
T ss_pred             -CCCCCCCccCC
Confidence             24567778876

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.76  E-value=5.7e-16  Score=133.32  Aligned_cols=199  Identities=21%  Similarity=0.209  Sum_probs=130.5

Q ss_pred             CCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEc--c
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKT--E  184 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~--~  184 (340)
                      +...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +......+....|+|||+.|+ +.+.++...||.+  .
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  272 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD  272 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence            45678899999999998876643   459999998886543 323334567899999999876 4567777666654  4


Q ss_pred             CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEE--ECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY--DISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (340)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  262 (340)
                      .+. ...+.. +........|+|||+.++    +++..++...+|  ++.+++.. .+...........|+|||++|+..
T Consensus       273 ~~~-~~~lt~-~~~~~~~~~wSpDG~~l~----f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~  345 (427)
T PRK02889        273 GSG-LRRLTQ-SSGIDTEPFFSPDGRSIY----FTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYI  345 (427)
T ss_pred             CCC-cEECCC-CCCCCcCeEEcCCCCEEE----EEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEE
Confidence            333 344433 233456789999999732    233333444444  55555432 222223334567899999999987


Q ss_pred             eCCC---cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC-cEEEEEecCCC
Q 019482          263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW-GAMITKLTVPA  321 (340)
Q Consensus       263 ~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~  321 (340)
                      +.++   .|.+||+.+++...... .   .......|+|||+.|+.++.++ .-.++-+....
T Consensus       346 s~~~g~~~I~v~d~~~g~~~~lt~-~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g  404 (427)
T PRK02889        346 SRVGGAFKLYVQDLATGQVTALTD-T---TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG  404 (427)
T ss_pred             EccCCcEEEEEEECCCCCeEEccC-C---CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence            7654   59999998887654332 1   2346789999999888777654 44455555443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.8e-15  Score=130.80  Aligned_cols=217  Identities=14%  Similarity=0.068  Sum_probs=143.4

Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---CCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|.++|.+.... ..+.       .+...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+......+...+|
T Consensus       183 ~l~~~d~dg~~~-~~lt-------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~  253 (435)
T PRK05137        183 RLAIMDQDGANV-RYLT-------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRF  253 (435)
T ss_pred             EEEEECCCCCCc-EEEe-------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEE
Confidence            677888755432 2222       25578999999999998887653   468999999887653 33344556778999


Q ss_pred             cCCCCeEE-EeeCCCe--EEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          163 SLDSEFLA-TTSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       163 ~~~~~~l~-~~~~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      +|||+.|+ +.+.++.  |++||+++++.. .+.. +........|+|||+.+++  .........|.++|+..++.. .
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~-~~~~~~~~~~spDG~~i~f--~s~~~g~~~Iy~~d~~g~~~~-~  328 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD-SPAIDTSPSYSPDGSQIVF--ESDRSGSPQLYVMNADGSNPR-R  328 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCceE-EccC-CCCccCceeEcCCCCEEEE--EECCCCCCeEEEEECCCCCeE-E
Confidence            99998775 4555554  777788877653 3432 3345677999999997421  111122357889998776543 3


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-Cc---E
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WG---A  312 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~---i  312 (340)
                      +......+....|+|||++|+..+.+   ..|.+||+.++... .+..   ...+....|+|||+.|+..+.+ +.   .
T Consensus       329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~  404 (435)
T PRK05137        329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAP  404 (435)
T ss_pred             eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccC---CCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence            33334556778999999999887643   36888898665443 2222   2246788999999988776553 22   3


Q ss_pred             EEEEecCC
Q 019482          313 MITKLTVP  320 (340)
Q Consensus       313 ~iw~~~~~  320 (340)
                      .+|.++..
T Consensus       405 ~L~~~dl~  412 (435)
T PRK05137        405 KLYTVDLT  412 (435)
T ss_pred             eEEEEECC
Confidence            45555443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=2e-15  Score=130.35  Aligned_cols=216  Identities=19%  Similarity=0.152  Sum_probs=141.8

Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|.+||...... ..+.       .+...+.+.+|+|||+.|+..+.+   ..|++||+.+++... +...........|
T Consensus       185 ~l~i~D~~g~~~-~~lt-------~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~  255 (433)
T PRK04922        185 ALQVADSDGYNP-QTIL-------RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSF  255 (433)
T ss_pred             EEEEECCCCCCc-eEee-------cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceE
Confidence            588888764432 2222       245678899999999998877643   469999998876543 2233334557899


Q ss_pred             cCCCCeEE-EeeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCcEE
Q 019482          163 SLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKI  237 (340)
Q Consensus       163 ~~~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~  237 (340)
                      +|||+.|+ +.+.++  .|++||+.+++.. .+.. +......++|+|||+.+    +++...++  .|.++|+.+++..
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~~~~spDG~~l----~f~sd~~g~~~iy~~dl~~g~~~  329 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN-HFGIDTEPTWAPDGKSI----YFTSDRGGRPQIYRVAASGGSAE  329 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEE----EEEECCCCCceEEEEECCCCCeE
Confidence            99998775 445555  5999999887653 3432 22345678999999973    22233333  5777788776643


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-CcEE
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAM  313 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~  313 (340)
                       .+.........++|+|||++|+..+.++   .|.+||+.+++..... .   ........|+|||++|+..+.+ +.-.
T Consensus       330 -~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt-~---~~~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        330 -RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT-P---GSLDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             -EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC-C---CCCCCCceECCCCCEEEEEEecCCceE
Confidence             2333333455789999999998875443   5999999887765332 2   1234567999999988776654 4445


Q ss_pred             EEEecCCC
Q 019482          314 ITKLTVPA  321 (340)
Q Consensus       314 iw~~~~~~  321 (340)
                      ||.+...+
T Consensus       405 L~~~~~~g  412 (433)
T PRK04922        405 LAAVSTDG  412 (433)
T ss_pred             EEEEECCC
Confidence            55554433

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.2e-15  Score=131.35  Aligned_cols=223  Identities=18%  Similarity=0.186  Sum_probs=140.1

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCC
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDG  134 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg  134 (340)
                      +..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +..       ..+.+...+|+|||+.|+ +.+.+|
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~-------~~g~~~~~~~SPDG~~la~~~~~~g  262 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VAN-------FKGSNSAPAWSPDGRTLAVALSRDG  262 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eec-------CCCCccceEECCCCCEEEEEEccCC
Confidence            44567789999999999999877643   359999998775422 211       224456889999999886 456777


Q ss_pred             cEEEE--eCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEc--cCCeeEEEeecCCCCceeeEEEccCC
Q 019482          135 HLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKT--EDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       135 ~i~~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      ...+|  |+.++. ...+..+........|+|||+.|+..+. ++...+|.+  ..++. ..+... .......+|+|+|
T Consensus       263 ~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~-g~~~~~~~~SpDG  339 (427)
T PRK02889        263 NSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT-GSYNTSPRISPDG  339 (427)
T ss_pred             CceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC-CCCcCceEECCCC
Confidence            76665  444443 3344444444567889999998876653 456666655  44433 222211 2234568999999


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEeecccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~  286 (340)
                      +.+++  ....+.+..|.+||+.+++... +.. ........|+|||++|+.++.++   .+.+.++. +.....+. .+
T Consensus       340 ~~Ia~--~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~-~~  413 (427)
T PRK02889        340 KLLAY--ISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLS-VQ  413 (427)
T ss_pred             CEEEE--EEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEee-cC
Confidence            97321  1111223479999998877543 222 22346789999999998887544   35566663 43333332 22


Q ss_pred             cccceeeEEEecC
Q 019482          287 LGTSIALVEFCPT  299 (340)
Q Consensus       287 ~~~~i~~~~~~~~  299 (340)
                       ...+...+|+|-
T Consensus       414 -~g~~~~p~wsp~  425 (427)
T PRK02889        414 -GGDVREPSWGPF  425 (427)
T ss_pred             -CCCCCCCccCCC
Confidence             345777788873

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=4.4e-17  Score=131.97  Aligned_cols=255  Identities=14%  Similarity=0.108  Sum_probs=189.3

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV  132 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  132 (340)
                      +...|.+|.+.|+.+.|+..|..|++++.|..|.+||.........+..      .|...|....|-|  +..-+++++.
T Consensus       134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S------GH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES------GHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccccc------ccccchhhhhccCCCCCcCceeccc
Confidence            3456889999999999999999999999999999999988877666544      3667777778888  3457899999


Q ss_pred             CCcEEEEeCCCCce---eeccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEee--cCCCC---ceeeE
Q 019482          133 DGHLRIMHWPSLRI---ILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLT--RNSDE---KIELC  203 (340)
Q Consensus       133 dg~i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~---~v~~~  203 (340)
                      ||.+++=.+.....   ...+..|+++|.-++.-|+.. -|.+++.|+.+.-+|++.+.+...+.  .....   ....+
T Consensus       208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence            99999987653322   334556778999999999654 59999999999999999876544432  12222   46778


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCcEE------eeee------ccCCCeeEEEECCCCCEEEEeeCCCcEEEE
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI------GHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  271 (340)
                      +..|...+.    +++++.|..+++||.+.-...      ..+-      .....|++++++.++.-|.+.-.|-.|+++
T Consensus       288 a~~P~nt~~----faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF  363 (559)
T KOG1334|consen  288 AVDPRNTNE----FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLF  363 (559)
T ss_pred             ecCCCCccc----cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEe
Confidence            888887753    688999999999998754321      1211      223568999999887777777778889999


Q ss_pred             eccC--c----------eEeecccccccc-cceeeEEE-ecCCeEEEEEecCCcEEEEEecC
Q 019482          272 DVKK--M----------EINHWSKRLHLG-TSIALVEF-CPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       272 d~~~--~----------~~~~~~~~~~~~-~~i~~~~~-~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      .-..  +          ........+|.. ..|..+-| -|...++++||+-|.|.||+-..
T Consensus       364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t  425 (559)
T KOG1334|consen  364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT  425 (559)
T ss_pred             ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence            5432  2          112222345542 35777775 57889999999999999999654

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=2.9e-15  Score=115.96  Aligned_cols=271  Identities=14%  Similarity=0.093  Sum_probs=182.3

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE-EEEecCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNG   85 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~   85 (340)
                      |.-+.|.-+..   .+..+     ...++.+.+|++.        .+.....++.....+.+++|||||+.| .+..-+-
T Consensus        51 i~yieW~ads~---~ilC~-----~yk~~~vqvwsl~--------Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~l  114 (447)
T KOG4497|consen   51 IVYIEWKADSC---HILCV-----AYKDPKVQVWSLV--------QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDL  114 (447)
T ss_pred             hhheeeeccce---eeeee-----eeccceEEEEEee--------cceeEEEeccCCCcceeeeECCCcceEeeeeccee
Confidence            44566775332   22222     4467789999998        666667777888899999999999655 4666777


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--------------------------------
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------------------------------  133 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------------------------  133 (340)
                      .|.+|.+.+.+......        ....+..++|+|||++.+.+++.                                
T Consensus       115 riTVWSL~t~~~~~~~~--------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW  186 (447)
T KOG4497|consen  115 RITVWSLNTQKGYLLPH--------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW  186 (447)
T ss_pred             EEEEEEeccceeEEecc--------cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE
Confidence            89999998876533221        12456888999999887765421                                


Q ss_pred             ----CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee---------------------
Q 019482          134 ----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---------------------  188 (340)
Q Consensus       134 ----g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---------------------  188 (340)
                          ..+.+||-.-.-.+... .-.-.+..++|+|.+++|+.|+.|+.+|+.+--+-+.                     
T Consensus       187 sPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke  265 (447)
T KOG4497|consen  187 SPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE  265 (447)
T ss_pred             CCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence                22444442111111111 1113688899999999999999999988854321100                     


Q ss_pred             ---------------------------------------EEEee-----cCCCCceeeEEEccCCCcceEEEEEec--CC
Q 019482          189 ---------------------------------------WTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQR--GD  222 (340)
Q Consensus       189 ---------------------------------------~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~  222 (340)
                                                             +..++     .+..-.+.-++|++|..+     +++-  ..
T Consensus       266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y-----~aTrnd~~  340 (447)
T KOG4497|consen  266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY-----AATRNDKY  340 (447)
T ss_pred             hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE-----EeeecCCC
Confidence                                                   00011     011123556899999885     3332  33


Q ss_pred             cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV  302 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  302 (340)
                      -+.+-+||++..+.- ..-....+|....|+|....|+.+.....+++|.......+.....   +-.|..+.|..+|..
T Consensus       341 PnalW~Wdlq~l~l~-avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~---GF~i~~l~W~~~g~~  416 (447)
T KOG4497|consen  341 PNALWLWDLQNLKLH-AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK---GFNIQKLQWLQPGEF  416 (447)
T ss_pred             CceEEEEechhhhhh-hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC---CceeeeEEecCCCcE
Confidence            467999999986643 3333457899999999888888887777899999877666554333   468999999999999


Q ss_pred             EEEEecCCc
Q 019482          303 VLTASKEWG  311 (340)
Q Consensus       303 l~~~~~dg~  311 (340)
                      ++..++|.-
T Consensus       417 i~l~~kDaf  425 (447)
T KOG4497|consen  417 IVLCGKDAF  425 (447)
T ss_pred             EEEEcCCce
Confidence            999999953

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=1.4e-17  Score=128.65  Aligned_cols=223  Identities=12%  Similarity=0.136  Sum_probs=158.9

Q ss_pred             EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCCCce
Q 019482           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRI  146 (340)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~  146 (340)
                      -..|||+|+++|++++- .+.|-|.++-+....+..        -..|.-+.|..|..++++ ...|+.|.+|++...+-
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew   83 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW   83 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--------HHHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence            36799999999999877 488888777664433322        245677889988876655 46788999999998888


Q ss_pred             eeccccCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc-
Q 019482          147 ILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-  224 (340)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-  224 (340)
                      ..++.....++..+.|+|||+. |.+...|-.|.+|.+.+.+....-  +....+..++|+|||++.    .+....|. 
T Consensus        84 ~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f~----ai~sRrDCk  157 (447)
T KOG4497|consen   84 YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQFC----AILSRRDCK  157 (447)
T ss_pred             EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCcee----eeeecccHH
Confidence            8888888889999999999965 556667899999999877664433  333457899999999962    12222221 


Q ss_pred             -eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482          225 -LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (340)
Q Consensus       225 -~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  303 (340)
                       .+.+.....+..++.+....-..+.+.|+|||..|++         ||.--...+..   .+.+-.+..++|+|.+++|
T Consensus       158 dyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~a---Ye~~lG~k~v~wsP~~qfl  225 (447)
T KOG4497|consen  158 DYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYA---YERGLGLKFVEWSPCNQFL  225 (447)
T ss_pred             HHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeee---eeeccceeEEEeccccceE
Confidence             1223333344455666666667889999999988875         44322222111   2224578899999999999


Q ss_pred             EEEecCCcEEEEEe
Q 019482          304 LTASKEWGAMITKL  317 (340)
Q Consensus       304 ~~~~~dg~i~iw~~  317 (340)
                      +.|+.|+.++|-+-
T Consensus       226 avGsyD~~lrvlnh  239 (447)
T KOG4497|consen  226 AVGSYDQMLRVLNH  239 (447)
T ss_pred             Eeeccchhhhhhce
Confidence            99999999988653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.74  E-value=3e-17  Score=141.10  Aligned_cols=239  Identities=15%  Similarity=0.224  Sum_probs=177.0

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      ..|+|+.|..   .+..++.|.      .+..++||..+        +..+.....||.+.|+.++.+.+...+++++.|
T Consensus       191 naVyca~fDr---tg~~Iitgs------dd~lvKiwS~e--------t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D  253 (1113)
T KOG0644|consen  191 NAVYCAIFDR---TGRYIITGS------DDRLVKIWSME--------TARCLASCRGHSGDITDLAVSSNNTMIAAASND  253 (1113)
T ss_pred             hheeeeeecc---ccceEeecC------ccceeeeeecc--------chhhhccCCCCccccchhccchhhhhhhhcccC
Confidence            4589999988   445666555      56669999976        445556788999999999999888899999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc-----cCcc----
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-----KAHK----  155 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-----~~~~----  155 (340)
                      ..|++|.+..+..+..+.       +|.+.|++++|+|-.    +.+.||++++||.+ .......+     ...+    
T Consensus       254 ~vIrvWrl~~~~pvsvLr-------ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s  321 (1113)
T KOG0644|consen  254 KVIRVWRLPDGAPVSVLR-------GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDS  321 (1113)
T ss_pred             ceEEEEecCCCchHHHHh-------ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceee
Confidence            999999999988765554       388999999999954    66789999999976 11110000     0000    


Q ss_pred             ----------------------ceeEEEecCCCCeEEEee-----------CCCeEEEEEccCCeeEEEeecCCCCceee
Q 019482          156 ----------------------SVLDMDFSLDSEFLATTS-----------TDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (340)
Q Consensus       156 ----------------------~i~~~~~~~~~~~l~~~~-----------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~  202 (340)
                                            .+.+++|..+.-.+++.+           .+-.+++|++.+++..+.+.. +...+..
T Consensus       322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-hsd~~yv  400 (1113)
T KOG0644|consen  322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-HSDEVYV  400 (1113)
T ss_pred             eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-cccceee
Confidence                                  122333333333333333           334567788888877766654 4457899


Q ss_pred             EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      +.++|-+..+    ..+++.||...|||+-.+.+++.+......+..-+||+||..++....-|.++|.....++
T Consensus       401 Ld~Hpfn~ri----~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  401 LDVHPFNPRI----AMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             eeecCCCcHh----hhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            9999988764    5788999999999999998887776656677788999999999998888999998765543

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.73  E-value=8.9e-16  Score=116.77  Aligned_cols=156  Identities=16%  Similarity=0.156  Sum_probs=108.3

Q ss_pred             EEEEEecCCCeEEEccC----------CCcEEEEeCCCC-ceeeccc-cCccceeEEEecCCCCeEEEe--eCCCeEEEE
Q 019482          116 KCLSFSVDGSRFAAGGV----------DGHLRIMHWPSL-RIILDEP-KAHKSVLDMDFSLDSEFLATT--STDGSARIW  181 (340)
Q Consensus       116 ~~~~~~~~~~~l~~~~~----------dg~i~~~d~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~l~~~--~~d~~v~iw  181 (340)
                      ..+.|+|+|++|+.-..          -+...+|.++.. .....+. ...++|.+++|+|+|+.|++.  ..+..|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            45789999987765432          134555555322 2222222 233479999999999986554  467799999


Q ss_pred             EccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEE
Q 019482          182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (340)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  261 (340)
                      |++ ++.+..+.   ...+..+.|+|+|+++++  ...+...|.|.+||.++.+.+.....  ..++.++|+|||+++++
T Consensus        89 d~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~--~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   89 DVK-GKKIFSFG---TQPRNTISWSPDGRFLVL--AGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLAT  160 (194)
T ss_pred             cCc-ccEeEeec---CCCceEEEECCCCCEEEE--EEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEE
Confidence            996 66666664   345789999999997321  11223457899999998888755543  34789999999999999


Q ss_pred             eeC------CCcEEEEeccCceEee
Q 019482          262 GSK------DGDICVVDVKKMEINH  280 (340)
Q Consensus       262 ~~~------dg~i~i~d~~~~~~~~  280 (340)
                      +..      |+.++||+.. |+.+.
T Consensus       161 a~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             EEeccceeccccEEEEEec-CeEeE
Confidence            864      7889999985 44443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=5.7e-15  Score=122.30  Aligned_cols=286  Identities=10%  Similarity=0.059  Sum_probs=197.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCC-C-eeEEEEcCCCCeEEEE
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG-D-PMTIAVNPSGDDFVCS   81 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~-~-v~~~~~~~~~~~l~~~   81 (340)
                      ..--+.+.-+|+..  .++|+|.      ....|++|++..-        .  ..+..|.+ . |.-.-.+.|-..++.-
T Consensus        51 p~ast~ik~s~DGq--Y~lAtG~------YKP~ikvydlanL--------S--LKFERhlDae~V~feiLsDD~SK~v~L  112 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQ--YLLATGT------YKPQIKVYDLANL--------S--LKFERHLDAEVVDFEILSDDYSKSVFL  112 (703)
T ss_pred             ccccceeEecCCCc--EEEEecc------cCCceEEEEcccc--------e--eeeeecccccceeEEEeccchhhheEe
Confidence            33445666777433  5666665      4455999998722        2  23344433 2 3333444444455556


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      ..|..|.+..-...-....          -...-.+++++.-..-|++++....|+-++++.|..+..+......++++.
T Consensus       113 ~~DR~IefHak~G~hy~~R----------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~  182 (703)
T KOG2321|consen  113 QNDRTIEFHAKYGRHYRTR----------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVS  182 (703)
T ss_pred             ecCceeeehhhcCeeeeee----------cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeee
Confidence            6677776655332211111          112335566665333344445556788899999998877766667899999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----------CceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  231 (340)
                      .++-..+|++|+.+|.|..||.+....+..+.....          ..|+++.|+.+|-.     ++.|..+|.+.|||+
T Consensus       183 in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-----~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  183 INEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-----VAVGTSTGSVLIYDL  257 (703)
T ss_pred             ecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee-----EEeeccCCcEEEEEc
Confidence            999888999999999999999998777666643221          24899999999876     799999999999999


Q ss_pred             CCCcEEeeee-ccCCCeeEEEECCC--CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482          232 STWNKIGHKR-LLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       232 ~~~~~~~~~~-~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      +..+++.... ...-+|..+.|.+.  ++.+++. ....++|||-.+++....+..   ...++.+++-|++-+++++-.
T Consensus       258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane  333 (703)
T KOG2321|consen  258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANE  333 (703)
T ss_pred             ccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecC
Confidence            9988764332 22357888999775  4455554 456799999999998887654   346999999999999999999


Q ss_pred             CCcEEEEEecCCCCCCCC
Q 019482          309 EWGAMITKLTVPADWKGL  326 (340)
Q Consensus       309 dg~i~iw~~~~~~~~~~~  326 (340)
                      ++.+..|-++.-+..+.|
T Consensus       334 ~~~m~~yyiP~LGPaPrW  351 (703)
T KOG2321|consen  334 SSKMHTYYIPSLGPAPRW  351 (703)
T ss_pred             CCcceeEEccccCCCchh
Confidence            998888887654443334

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.71  E-value=6.8e-14  Score=107.94  Aligned_cols=283  Identities=12%  Similarity=0.148  Sum_probs=174.8

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEE-EEe
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~   82 (340)
                      ..+..+++|+.+.   ...+.|       .+...++|+.+|-.+.....      +....-.+.-+-|  ..++|| +|+
T Consensus         5 ~~~~lsvs~NQD~---ScFava-------~~~Gfriyn~~P~ke~~~r~------~~~~G~~~veMLf--R~N~laLVGG   66 (346)
T KOG2111|consen    5 EPKTLSVSFNQDH---SCFAVA-------TDTGFRIYNCDPFKESASRQ------FIDGGFKIVEMLF--RSNYLALVGG   66 (346)
T ss_pred             cCceeEEEEccCC---ceEEEE-------ecCceEEEecCchhhhhhhc------cccCchhhhhHhh--hhceEEEecC
Confidence            3456779999853   334433       34459999999743322110      1111111222222  344555 333


Q ss_pred             cC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-ceeecccc--C
Q 019482           83 TN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPK--A  153 (340)
Q Consensus        83 ~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~--~  153 (340)
                      .+      ..+.|||=....+...+        .-..+|.++.+.++  .|++.- .+.|++|...+. +.+..+..  .
T Consensus        67 g~~pky~pNkviIWDD~k~~~i~el--------~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~N  135 (346)
T KOG2111|consen   67 GSRPKYPPNKVIIWDDLKERCIIEL--------SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSN  135 (346)
T ss_pred             CCCCCCCCceEEEEecccCcEEEEE--------EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccC
Confidence            33      37999994444433333        24578999999876  555554 578999998743 33332222  1


Q ss_pred             ccceeEEEecCCCCeEEEee-CCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce-EEEEE
Q 019482          154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYD  230 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d  230 (340)
                      .....+++-+.+...||.-+ .-|.|+|-|+...+. ...+...|+..|.+++.+-+|..     +++++..|+ |+|||
T Consensus       136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~-----vATaStkGTLIRIFd  210 (346)
T KOG2111|consen  136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTL-----VATASTKGTLIRIFD  210 (346)
T ss_pred             CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccE-----EEEeccCcEEEEEEE
Confidence            23444444333444555433 568999999976555 12233456788999999999997     788887776 79999


Q ss_pred             CCCCcEEeeeecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec-----------ccccc-----------
Q 019482          231 ISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW-----------SKRLH-----------  286 (340)
Q Consensus       231 ~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~-----------  286 (340)
                      ..+++.+.+++..  ...|.+++|||++.+|+++|+.|+|+||.++.......           +...-           
T Consensus       211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l  290 (346)
T KOG2111|consen  211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQL  290 (346)
T ss_pred             cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEc
Confidence            9999999888754  35799999999999999999999999998865321111           10000           


Q ss_pred             cccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ..++..-++|-.+.+.++..+.||.-+=+.+...
T Consensus       291 ~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~~~  324 (346)
T KOG2111|consen  291 PQGTQCIIAFGSETNTVIAICADGSYYKFKFDPK  324 (346)
T ss_pred             cCCCcEEEEecCCCCeEEEEEeCCcEEEEEeccc
Confidence            0124445666666455666667776655555433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2.8e-16  Score=129.35  Aligned_cols=209  Identities=15%  Similarity=0.196  Sum_probs=150.2

Q ss_pred             CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc-cCccceeEEEecC--CCCeEEEeeCCCeEEEEEccC
Q 019482          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTED  185 (340)
Q Consensus       109 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~  185 (340)
                      ..|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|  +.+++++|..|..|+++|+..
T Consensus        47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence            3589999999999999999999999999999988766665543 5667999999999  566899999999999999974


Q ss_pred             Ce----------eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee----------eeccCC
Q 019482          186 GV----------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH----------KRLLRK  245 (340)
Q Consensus       186 ~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~----------~~~~~~  245 (340)
                      .+          ....+. .|...|..++-.|++...    +.+++.||+|+-||++....-..          +...--
T Consensus       127 ~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~Pht----fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHT----FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             ccccccccCccchhhhhh-hhhhhhhheecCCCCCce----EEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            21          122222 334568888999998664    67889999999999987431100          111113


Q ss_pred             CeeEEEECCC-CCEEEEeeCCCcEEEEeccCc--------e----------Eeeccccccc----------ccceeeEEE
Q 019482          246 PASVLSISLD-GKYLAMGSKDGDICVVDVKKM--------E----------INHWSKRLHL----------GTSIALVEF  296 (340)
Q Consensus       246 ~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~--------~----------~~~~~~~~~~----------~~~i~~~~~  296 (340)
                      ...++.++|. ..+|++|+.|-..++||.+..        .          ++..+..+|.          -..++-+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            4678899994 578999999999999994321        1          1222222221          012677899


Q ss_pred             ecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      +|+|.-|+..-..-.|+++++.....
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCCCC
Confidence            99996555544445799999876554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.70  E-value=1.2e-14  Score=113.13  Aligned_cols=252  Identities=13%  Similarity=0.176  Sum_probs=166.4

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC------------CCeeEEEEcC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIAVNP   73 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~   73 (340)
                      -|.++.|..   .+.+||+|.++|.      +.++.-+.....   +......++.|+            ..|+.+.|.+
T Consensus        27 iis~vef~~---~Ge~LatGdkgGR------Vv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~   94 (433)
T KOG1354|consen   27 IISAVEFDH---YGERLATGDKGGR------VVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD   94 (433)
T ss_pred             ceeeEEeec---ccceEeecCCCCe------EEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence            467888888   5678999987665      777765433321   111222333333            3589999998


Q ss_pred             CCC--eEEEEecCCCEEEEEecCceeee-----------------------------eeccccCCCCCCCCCeEEEEEec
Q 019482           74 SGD--DFVCSTTNGGCKLFEVYGGATDI-----------------------------NLLAKKMPPLQDAGPQKCLSFSV  122 (340)
Q Consensus        74 ~~~--~l~~~~~d~~i~iw~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~v~~~~~~~  122 (340)
                      ++.  .++..+.|.+|++|.+.......                             .........-.|.-.|.++.++.
T Consensus        95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns  174 (433)
T KOG1354|consen   95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS  174 (433)
T ss_pred             CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence            765  67778889999999986533211                             00001111123666788999999


Q ss_pred             CCCeEEEccCCCcEEEEeCCCCce---eeccccCc-----cceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE----
Q 019482          123 DGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAH-----KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW----  189 (340)
Q Consensus       123 ~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~----  189 (340)
                      |+..++++. |-.|.+|+++--..   +..+.++.     .-|++..|+| ..+.++..+..|+|++.|++....-    
T Consensus       175 D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs  253 (433)
T KOG1354|consen  175 DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS  253 (433)
T ss_pred             ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence            998888764 77899999864322   22233332     3689999999 5677888888999999999853211    


Q ss_pred             EEeec-----------CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCC------------
Q 019482          190 TFLTR-----------NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRK------------  245 (340)
Q Consensus       190 ~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~------------  245 (340)
                      +.+..           .--..|..+.|+++|++     ++ .-+--+|++||+. ..+++..+..|..            
T Consensus       254 KlfEepedp~~rsffseiIsSISDvKFs~sGry-----il-sRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD  327 (433)
T KOG1354|consen  254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRY-----IL-SRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND  327 (433)
T ss_pred             hhhccccCCcchhhHHHHhhhhhceEEccCCcE-----EE-EeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence            00100           01135788999999996     33 3344789999994 5556666655531            


Q ss_pred             ---CeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482          246 ---PASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       246 ---~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  276 (340)
                         .-..++|+-++.++++|+..+..++|+...+
T Consensus       328 ~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  328 AIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             chhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence               1245789999999999999999999996543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.70  E-value=2.6e-14  Score=123.68  Aligned_cols=207  Identities=17%  Similarity=0.122  Sum_probs=138.1

Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|.++|...... ..+.       .+...+...+|+|||++|+.+..+   ..|++||+.+++... +......+..++|
T Consensus       171 ~l~~~d~~g~~~-~~l~-------~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~  241 (417)
T TIGR02800       171 ELQVADYDGANP-QTIT-------RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAF  241 (417)
T ss_pred             eEEEEcCCCCCC-EEee-------cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEE
Confidence            577777654332 2222       134568889999999999877643   479999998876443 2234445667899


Q ss_pred             cCCCCeEEE-eeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC--CcceEEEEECCCCcEE
Q 019482          163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKI  237 (340)
Q Consensus       163 ~~~~~~l~~-~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~  237 (340)
                      +||++.|+. .+.++  .|++||+.+++.. .+.. +........|+|+++.++    +...  ....|.++|+.+++..
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~s~dg~~l~----~~s~~~g~~~iy~~d~~~~~~~  315 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTN-GPGIDTEPSWSPDGKSIA----FTSDRGGSPQIYMMDADGGEVR  315 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCC-CCCCCCCEEECCCCCEEE----EEECCCCCceEEEEECCCCCEE
Confidence            999987764 44444  5888998876543 3332 223455789999998732    2222  2346888898876643


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  312 (340)
                       .+.........+.|+|+|++++.++.++   .|.+||+.++.......    ........|+|||++|+..+.++..
T Consensus       316 -~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~p~~spdg~~l~~~~~~~~~  388 (417)
T TIGR02800       316 -RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----TGLDESPSFAPNGRMILYATTRGGR  388 (417)
T ss_pred             -EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC----CCCCCCceECCCCCEEEEEEeCCCc
Confidence             3444455667889999999999988775   78999998765433221    1234566899999988887776533

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1.4e-14  Score=123.28  Aligned_cols=294  Identities=14%  Similarity=0.142  Sum_probs=200.3

Q ss_pred             CCCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCC-------eeeEEEecCCCCeeEEEEcC
Q 019482            1 MEGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSP-------LVTYVFDESEGDPMTIAVNP   73 (340)
Q Consensus         1 ~~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~~   73 (340)
                      ++...+..|++|+.+   ..++|.||      .++.+++..++.++......+       ....++.||...|.-+.|+.
T Consensus        11 iPnnvkL~c~~WNke---~gyIAcgG------~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe   81 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNKE---SGYIACGG------ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE   81 (1189)
T ss_pred             CCCCceEEEEEEccc---CCeEEecc------ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence            356788999999994   35777777      566699999987665554333       35568999999999999999


Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      +.+.|-+...+|.|.+|-+..+.........     +..+.|.+++|+.||..++.+..||.|.+=.++..+ +....-.
T Consensus        82 ~~QKLTtSDt~GlIiVWmlykgsW~EEMiNn-----RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLk  155 (1189)
T KOG2041|consen   82 NNQKLTTSDTSGLIIVWMLYKGSWCEEMINN-----RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELK  155 (1189)
T ss_pred             ccccccccCCCceEEEEeeecccHHHHHhhC-----cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcc
Confidence            9899999999999999999888765544433     255789999999999999999999999887766433 3211111


Q ss_pred             ccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-------eeEEEee---cCCCCceeeEEEc--------cCCCcceEE
Q 019482          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-------VAWTFLT---RNSDEKIELCRFS--------KDGTKPFLF  215 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-------~~~~~~~---~~~~~~v~~~~~~--------~~~~~~~~~  215 (340)
                      ......+.|++|.+.++.+-..|.+.+||.+..       .+.....   ......+..+.|.        |+...    
T Consensus       156 g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~----  231 (1189)
T KOG2041|consen  156 GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR----  231 (1189)
T ss_pred             hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE----
Confidence            124567899999999888888999999997532       1111111   1112235555554        34443    


Q ss_pred             EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---------CcEEEEeccCceEeecccccc
Q 019482          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---------GDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~  286 (340)
                       ++.+-..|.+.+..-.+......+. ..-.+....|+++|..|++++.+         +.|.+|.. -|+.+..+.. .
T Consensus       232 -lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkv-p  307 (1189)
T KOG2041|consen  232 -LAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKV-P  307 (1189)
T ss_pred             -EEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEec-C
Confidence             5666667777766544333222222 22567889999999999998764         24555543 3444444432 2


Q ss_pred             cccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                       +..|++++|-..|-.++.+ .|+.|++=++..
T Consensus       308 -g~~It~lsWEg~gLriA~A-vdsfiyfanIRP  338 (1189)
T KOG2041|consen  308 -GSCITGLSWEGTGLRIAIA-VDSFIYFANIRP  338 (1189)
T ss_pred             -CceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence             4679999998777666655 456666655543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.68  E-value=2.9e-12  Score=101.09  Aligned_cols=277  Identities=16%  Similarity=0.219  Sum_probs=183.2

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPL  109 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~  109 (340)
                      ....|..|+++.....+...     .+-.+.+.++-++|+|+++.|.++..+   |.|..|.++.......+.....  .
T Consensus        14 ~s~gI~v~~ld~~~g~l~~~-----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--~   86 (346)
T COG2706          14 ESQGIYVFNLDTKTGELSLL-----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--L   86 (346)
T ss_pred             CCCceEEEEEeCcccccchh-----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--c
Confidence            35669999999666555322     223467789999999999999887655   6788888876422223322211  1


Q ss_pred             CCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceee---ccccCcc----------ceeEEEecCCCCeEEEeeC-
Q 019482          110 QDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIIL---DEPKAHK----------SVLDMDFSLDSEFLATTST-  174 (340)
Q Consensus       110 ~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~---~~~~~~~----------~i~~~~~~~~~~~l~~~~~-  174 (340)
                       ...+...++++++|++++++.. .|.|.++.++....+.   ....|.+          .+....+.|++++|++..- 
T Consensus        87 -~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG  165 (346)
T COG2706          87 -PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG  165 (346)
T ss_pred             -CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence             2233488999999999988865 4789999886522111   1112222          2788899999999998863 


Q ss_pred             CCeEEEEEccCCeeEEEe--ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-cEEeeeecc--------
Q 019482          175 DGSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-NKIGHKRLL--------  243 (340)
Q Consensus       175 d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~--------  243 (340)
                      -..|.+|++..++....-  ........+.+.|+|+++..++    ..--+++|.+|..... ..+..+..+        
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~----v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~  241 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYL----VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT  241 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEE----EeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence            247999999977653221  1123345789999999997543    3345788999998873 222222211        


Q ss_pred             -CCCeeEEEECCCCCEEEEeeC-CCcEEEEeccC--ceEeecccccccccceeeEEEecCCeEEEEEecC-CcEEEEEec
Q 019482          244 -RKPASVLSISLDGKYLAMGSK-DGDICVVDVKK--MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT  318 (340)
Q Consensus       244 -~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw~~~  318 (340)
                       ......+.++|||++|.+... ...|.+|.+..  ++..........+...+...|+++|++|+++..+ ..+.++..+
T Consensus       242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence             245678899999999998854 34688887654  3322211112223457899999999999888875 569999887


Q ss_pred             CCC
Q 019482          319 VPA  321 (340)
Q Consensus       319 ~~~  321 (340)
                      ...
T Consensus       322 ~~T  324 (346)
T COG2706         322 KET  324 (346)
T ss_pred             CCC
Confidence            543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=2.1e-13  Score=118.19  Aligned_cols=222  Identities=15%  Similarity=0.107  Sum_probs=140.6

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCC
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG  134 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg  134 (340)
                      +..+...+....|+|||+.|+..+.+   ..|.+|++.+++... +..       ..+.+....|+|||+.|+. ...+|
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~-------~~g~~~~~~~SpDG~~la~~~~~~g  265 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITN-------FEGLNGAPAWSPDGSKLAFVLSKDG  265 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccC-------CCCCcCCeEECCCCCEEEEEEccCC
Confidence            44566788999999999999876543   368889998765422 111       1234456899999998864 44444


Q ss_pred             --cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       135 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                        .|++||+.+++.. .+..+........|+|||+.|+..+. ++  .|+++|+.+++... +... ........|+|+|
T Consensus       266 ~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~~~~~~Spdg  342 (430)
T PRK00178        266 NPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYNARPRLSADG  342 (430)
T ss_pred             CceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCccceEECCCC
Confidence              5888899877644 34344445567889999998776653 33  57778887776433 2211 1234567899999


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~  286 (340)
                      +.+++  .........|.++|+.+++.. .+.. ........|+|||+.++..+.+   ..|.++++...... .+. .+
T Consensus       343 ~~i~~--~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~-~l~-~~  416 (430)
T PRK00178        343 KTLVM--VHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRL-PLP-TA  416 (430)
T ss_pred             CEEEE--EEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceE-ECc-CC
Confidence            97432  111122346889999887653 2222 2222356899999999887654   34777777544332 222 12


Q ss_pred             cccceeeEEEec
Q 019482          287 LGTSIALVEFCP  298 (340)
Q Consensus       287 ~~~~i~~~~~~~  298 (340)
                       ...+...+|+|
T Consensus       417 -~g~~~~p~ws~  427 (430)
T PRK00178        417 -QGEVREPSWSP  427 (430)
T ss_pred             -CCCcCCCccCC
Confidence             34567777876

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2.5e-13  Score=117.78  Aligned_cols=216  Identities=15%  Similarity=0.132  Sum_probs=139.5

Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|.++|.+.... ..+.       .+...+....|+|||+.|+..+.+   ..|.+||+.+++... +......+....|
T Consensus       180 ~l~~~d~~g~~~-~~l~-------~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~  250 (430)
T PRK00178        180 TLQRSDYDGARA-VTLL-------QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAW  250 (430)
T ss_pred             EEEEECCCCCCc-eEEe-------cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEE
Confidence            366677665432 2221       244678899999999988776543   369999998876543 3233344557899


Q ss_pred             cCCCCeEEE-eeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC--CcceEEEEECCCCcEE
Q 019482          163 SLDSEFLAT-TSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--DKALLAVYDISTWNKI  237 (340)
Q Consensus       163 ~~~~~~l~~-~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~  237 (340)
                      +|||+.|+. .+.++  .|+++|+++++.. .+.. .........|+|||+.++    +...  ....|.++|+.+++..
T Consensus       251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~-~~~~~~~~~~spDg~~i~----f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTN-HPAIDTEPFWGKDGRTLY----FTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeE-Eccc-CCCCcCCeEECCCCCEEE----EEECCCCCceEEEEECCCCCEE
Confidence            999998774 44444  6888899877653 3332 233466789999999742    2222  2346888888877643


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeCC-C--cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-CcEE
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAM  313 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~  313 (340)
                      . +...........|+|||++|+..+.+ +  .|.++|+.+++...... ..   ......|+|||++++..+.+ +.-.
T Consensus       325 ~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~---~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        325 R-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TS---LDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             E-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-CC---CCCCceECCCCCEEEEEEecCCceE
Confidence            2 22222334457899999999887653 2  58889998876544322 11   22356899999988776654 5555


Q ss_pred             EEEecCCC
Q 019482          314 ITKLTVPA  321 (340)
Q Consensus       314 iw~~~~~~  321 (340)
                      +|-++...
T Consensus       400 l~~~~~~g  407 (430)
T PRK00178        400 LMLVSING  407 (430)
T ss_pred             EEEEECCC
Confidence            66555544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.8e-13  Score=117.40  Aligned_cols=225  Identities=16%  Similarity=0.110  Sum_probs=136.4

Q ss_pred             cCCCCeeEEEEcCCCCe--E-EEEecCC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CC
Q 019482           61 ESEGDPMTIAVNPSGDD--F-VCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG  134 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~--l-~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg  134 (340)
                      .....+..-+|+|||+.  + ++...++  .|.+.++.+++.. .+..       ..+.....+|+|||+.|+..+. +|
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~-------~~g~~~~p~wSPDG~~Laf~s~~~g  253 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILA-------LQGNQLMPTFSPRKKLLAFISDRYG  253 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-Eeec-------CCCCccceEECCCCCEEEEEECCCC
Confidence            34556778899999975  3 2444443  5777777766432 2211       2234456899999998876542 22


Q ss_pred             ----cEEEEeCCCC--ceeeccccCc-cceeEEEecCCCCeEEEee-CCCeEEEE--EccC-CeeEEEeecCCCCceeeE
Q 019482          135 ----HLRIMHWPSL--RIILDEPKAH-KSVLDMDFSLDSEFLATTS-TDGSARIW--KTED-GVAWTFLTRNSDEKIELC  203 (340)
Q Consensus       135 ----~i~~~d~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~d~~v~iw--d~~~-~~~~~~~~~~~~~~v~~~  203 (340)
                          .+..|++..+  .....+.... .......|+|||+.|+..+ .++...+|  ++.. +.....+... ...+...
T Consensus       254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p  332 (428)
T PRK01029        254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCP  332 (428)
T ss_pred             CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccce
Confidence                3444676653  1222222222 3346789999999887665 46655555  4432 2233334322 2356789


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC---CCcEEEEeccCceEee
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVKKMEINH  280 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~  280 (340)
                      .|+|||+.+++  .........|.+||+.+++... +......+....|+|||+.|+....   ...|+++|+.+++...
T Consensus       333 ~wSPDG~~Laf--~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~  409 (428)
T PRK01029        333 AWSPDGKKIAF--CSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK  409 (428)
T ss_pred             eECCCCCEEEE--EEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            99999997422  1111224579999999887643 3333345678999999998876543   3568899998877654


Q ss_pred             cccccccccceeeEEEecCC
Q 019482          281 WSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       281 ~~~~~~~~~~i~~~~~~~~~  300 (340)
                      ...  . ...+...+|+|-.
T Consensus       410 Lt~--~-~g~~~~p~Ws~~~  426 (428)
T PRK01029        410 IVI--G-SGEKRFPSWGAFP  426 (428)
T ss_pred             eec--C-CCcccCceecCCC
Confidence            432  1 2356778888743

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.65  E-value=7.3e-12  Score=104.98  Aligned_cols=255  Identities=16%  Similarity=0.198  Sum_probs=158.3

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-CCCEEEEEecCc-eeeeee--c---cc-
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGG-ATDINL--L---AK-  104 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~-~~~~~~--~---~~-  104 (340)
                      ..+.|..|.++.+...+.  ..  ............++++|++++|+++.. +|.+.++++... ......  .   .. 
T Consensus        60 ~~g~v~~~~i~~~~g~L~--~~--~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g  135 (345)
T PF10282_consen   60 DSGGVSSYRIDPDTGTLT--LL--NSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSG  135 (345)
T ss_dssp             TTTEEEEEEEETTTTEEE--EE--EEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEE
T ss_pred             CCCCEEEEEECCCcceeE--Ee--eeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCC
Confidence            566788888886643331  11  112223445678999999999998875 789999999874 322211  1   00 


Q ss_pred             cCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCce-e---ecc-ccCccceeEEEecCCCCeEEEe-eCCCe
Q 019482          105 KMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI-I---LDE-PKAHKSVLDMDFSLDSEFLATT-STDGS  177 (340)
Q Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-~---~~~-~~~~~~i~~~~~~~~~~~l~~~-~~d~~  177 (340)
                      .....+......++.|+|+++++++.. ....|.+|++..... +   ..+ .........+.|+|+++++... ..+++
T Consensus       136 ~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~  215 (345)
T PF10282_consen  136 PNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT  215 (345)
T ss_dssp             SSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred             CcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence            011112346678999999999887753 235799999876541 1   111 1233467899999999987555 46788


Q ss_pred             EEEEEcc--CCee--EEEeec---CC--CCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--CCc--EEeeeeccC
Q 019482          178 ARIWKTE--DGVA--WTFLTR---NS--DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWN--KIGHKRLLR  244 (340)
Q Consensus       178 v~iwd~~--~~~~--~~~~~~---~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~--~~~~~~~~~  244 (340)
                      |.++++.  ++..  +..+..   ..  ......++++|||+++    .++....+.|.+|+++  +++  .+.......
T Consensus       216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l----yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G  291 (345)
T PF10282_consen  216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL----YVSNRGSNSISVFDLDPATGTLTLVQTVPTGG  291 (345)
T ss_dssp             EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE----EEEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred             EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE----EEEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence            9999998  4422  222221   11  1257789999999974    3556668899999994  233  333444445


Q ss_pred             CCeeEEEECCCCCEEEEeeC-CCcEEEEec--cCceEeecccccccccceeeEEE
Q 019482          245 KPASVLSISLDGKYLAMGSK-DGDICVVDV--KKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       245 ~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                      ...+.+.++|+|++|+++.. ++.|.+|++  +++.+........ -....++.|
T Consensus       292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~-~~~p~ci~f  345 (345)
T PF10282_consen  292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVP-IPSPVCIVF  345 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEE-SSSEEEEEE
T ss_pred             CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEeccccc-CCCCEEEeC
Confidence            55789999999999998874 568999976  4666554332222 234555554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.65  E-value=2.2e-13  Score=117.99  Aligned_cols=199  Identities=17%  Similarity=0.148  Sum_probs=131.1

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCC
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG  134 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg  134 (340)
                      +..+...+...+|+|||++|+.+...   ..|++||+.+++.....        .+.+.+.+++|+||++.|+. .+.++
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--------~~~~~~~~~~~spDg~~l~~~~~~~~  256 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--------SFPGMNGAPAFSPDGSKLAVSLSKDG  256 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--------cCCCCccceEECCCCCEEEEEECCCC
Confidence            44566678899999999999887644   47999999876532211        12345567899999987764 44444


Q ss_pred             --cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          135 --HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       135 --~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                        .|++||+.+++... +..+........|+||++.|+..+. ++  .|+++|+.+++.. .+.. .......+.|+|++
T Consensus       257 ~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-~~~~~~~~~~spdg  333 (417)
T TIGR02800       257 NPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-RGGYNASPSWSPDG  333 (417)
T ss_pred             CccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CCCCccCeEECCCC
Confidence              58889988765433 3333334456789999998876654 33  6888888766543 3332 23456788999999


Q ss_pred             CcceEEEEEecCCc---ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccC
Q 019482          210 TKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKK  275 (340)
Q Consensus       210 ~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~  275 (340)
                      +.+     +....+   ..|.+||+.++... .+... .......|+|||++|+..+.++   .+++.+...
T Consensus       334 ~~i-----~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       334 DLI-----AFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             CEE-----EEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence            873     333333   37999999876542 22222 2345568999999988877654   355555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.64  E-value=1.7e-13  Score=104.65  Aligned_cols=293  Identities=12%  Similarity=0.081  Sum_probs=182.6

Q ss_pred             eeeecCCCccEEEEcCCCCccc------CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC---CCC-eEEE
Q 019482           11 SWIKRPENVNLVVLGKSSRASS------SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP---SGD-DFVC   80 (340)
Q Consensus        11 ~w~~~~~~~~~~~~g~~~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~~   80 (340)
                      .|+|-....+++|.|+..-.-+      ..+.+.+|++.....    .+.....- .-...+..+.|..   +|. .++-
T Consensus        16 ~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~----~~l~~~q~-~dts~~~dm~w~~~~~~g~~~l~~   90 (339)
T KOG0280|consen   16 PICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKL----SPLDTLQC-TDTSTEFDMLWRIRETDGDFNLLD   90 (339)
T ss_pred             CccccccccceEEEeeEEecCCCCchheeccceEEEeeccccc----Cccceeee-ecccccceeeeeeccCCccceeee
Confidence            3444333346788777544222      345677777753321    22111212 2345677777763   455 5667


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc--eeeccccCcccee
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVL  158 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~i~  158 (340)
                      +...|.|.++..........+..-....+. .....++.|++.+..++++..+|.+.+-+.....  .++..+.|.-++.
T Consensus        91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~W  169 (339)
T KOG0280|consen   91 AHARGQIQLYRNDEDESSVHLRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAW  169 (339)
T ss_pred             ccccceEEEEeeccceeeeeecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeee
Confidence            778899999988765443333221111111 1135788999999999999999999866544332  3346677777888


Q ss_pred             EEEecC-CCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-Cc
Q 019482          159 DMDFSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WN  235 (340)
Q Consensus       159 ~~~~~~-~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~  235 (340)
                      ..+|+. +.+.+.+|+.|+.+..||+|. ++.+..-...|...|.++.-+|.....    +++|+.|..|++||.|+ ++
T Consensus       170 ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~----I~TGsYDe~i~~~DtRnm~k  245 (339)
T KOG0280|consen  170 TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTY----IATGSYDECIRVLDTRNMGK  245 (339)
T ss_pred             eeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCce----EEEeccccceeeeehhcccC
Confidence            899987 557889999999999999993 334333222334468888888764431    89999999999999995 45


Q ss_pred             EEeeeeccCCCeeEEEECCC--CCEEEEeeCCCcEEEEeccCceE----eecccccccccceeeEEEecCCeEEEEEec-
Q 019482          236 KIGHKRLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKKMEI----NHWSKRLHLGTSIALVEFCPTQRVVLTASK-  308 (340)
Q Consensus       236 ~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-  308 (340)
                      ++..- ...+.|+.+.++|.  ++.++++-.+| .+|-+.+....    .......| .+-+..-.|......|||++. 
T Consensus       246 Pl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFY  322 (339)
T KOG0280|consen  246 PLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFY  322 (339)
T ss_pred             ccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeeccccccccceeeeeecc
Confidence            54332 23478999999994  34455544444 77777655332    22233444 456667777555567888764 


Q ss_pred             CCcEE-EEE
Q 019482          309 EWGAM-ITK  316 (340)
Q Consensus       309 dg~i~-iw~  316 (340)
                      |..++ +|-
T Consensus       323 Dk~~~~~Wl  331 (339)
T KOG0280|consen  323 DKKIRQLWL  331 (339)
T ss_pred             ccceeeeee
Confidence            66644 564

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.64  E-value=6.4e-13  Score=110.07  Aligned_cols=231  Identities=16%  Similarity=0.154  Sum_probs=159.3

Q ss_pred             eEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC--eEEE-----ccCCCcEEEE
Q 019482           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS--RFAA-----GGVDGHLRIM  139 (340)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~~~  139 (340)
                      ++..|++|..+.| --..+.+++|++.+.+.....+        |...+..+.+||.+.  .+|+     .+.-..|++|
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl--------~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~  199 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKL--------SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY  199 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCccceeeee--------eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence            5888988776443 2234569999998744332222        557888999998633  3333     2445679999


Q ss_pred             eCCCCcee-----eccccCccceeEEEecCCCCe-EE--EeeCC---------CeEEEEEccCCeeEEEeecCCCCceee
Q 019482          140 HWPSLRII-----LDEPKAHKSVLDMDFSLDSEF-LA--TTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIEL  202 (340)
Q Consensus       140 d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~-l~--~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~v~~  202 (340)
                      .......-     ..+.. .+. ..+.|++-|.- |+  +..-|         .++++.+++...+...+.  ..++|.+
T Consensus       200 ~~~~~~~~~~~a~ksFFk-adk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhd  275 (566)
T KOG2315|consen  200 KYPEEGQHQPVANKSFFK-ADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHD  275 (566)
T ss_pred             ccccccccchhhhccccc-cce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceE
Confidence            87622211     11111 123 35789886653 22  22223         368888887445544443  5679999


Q ss_pred             EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC---CCcEEEEeccCceEe
Q 019482          203 CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVKKMEIN  279 (340)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~  279 (340)
                      +.|+|+++.   ++++.|-.-..+.+||++ ++++  +....++-+++-|+|.|++|+.++-   .|.|-+||..+.+.+
T Consensus       276 v~W~~s~~E---F~VvyGfMPAkvtifnlr-~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i  349 (566)
T KOG2315|consen  276 VTWSPSGRE---FAVVYGFMPAKVTIFNLR-GKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI  349 (566)
T ss_pred             EEECCCCCE---EEEEEecccceEEEEcCC-CCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence            999999987   346777788899999997 4444  4555678889999999999998875   478999999998877


Q ss_pred             ecccccccccceeeEEEecCCeEEEEEec------CCcEEEEEecCC
Q 019482          280 HWSKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVP  320 (340)
Q Consensus       280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~  320 (340)
                      ..+..    ..-+-+.|+|||++++|+..      |+.++||++.-.
T Consensus       350 ~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  350 AKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            76643    24566889999999998875      689999999643

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=5e-13  Score=115.56  Aligned_cols=222  Identities=15%  Similarity=0.140  Sum_probs=137.0

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecC-C--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCC
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTN-G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDG  134 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg  134 (340)
                      +..+...+....|+|||+.|+..+.+ +  .|.+||+.+++... +..       ..+.....+|+|||+.|+. .+.+|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~-------~~g~~~~~~wSPDG~~La~~~~~~g  284 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTS-------FPGINGAPRFSPDGKKLALVLSKDG  284 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecC-------CCCCcCCeeECCCCCEEEEEEeCCC
Confidence            34456678899999999998876543 3  58888887765321 111       1123346899999998765 45556


Q ss_pred             c--EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          135 H--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       135 ~--i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      .  |+++|+.+++.. .+..+........|+||++.|+..+. ++  .|+++|+.+++... +... .......+|+|||
T Consensus       285 ~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~~~~~~SpDG  361 (448)
T PRK04792        285 QPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQNLGGSITPDG  361 (448)
T ss_pred             CeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCCcCeeECCCC
Confidence            4  788888876643 34344445677899999998876653 33  56677777666433 3211 1223457899999


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC-C--cEEEEeccCceEeecccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~  286 (340)
                      +.+++  .........|.++|+.+++.. .+... .......|+|||+.|+..+.+ +  .+++++.. +.....+.. +
T Consensus       362 ~~l~~--~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~-~  435 (448)
T PRK04792        362 RSMIM--VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPA-G  435 (448)
T ss_pred             CEEEE--EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC-C
Confidence            97432  111122235777888887653 22221 122345899999988876543 3  37777874 443333322 2


Q ss_pred             cccceeeEEEec
Q 019482          287 LGTSIALVEFCP  298 (340)
Q Consensus       287 ~~~~i~~~~~~~  298 (340)
                       ...+...+|+|
T Consensus       436 -~g~~~~p~Wsp  446 (448)
T PRK04792        436 -QGEVKSPAWSP  446 (448)
T ss_pred             -CCCcCCCccCC
Confidence             34567788887

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.62  E-value=4.4e-14  Score=110.11  Aligned_cols=250  Identities=13%  Similarity=0.084  Sum_probs=167.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee-eeeeccc---c------CCCCCCCCCeEEEEEecCCC--eEEEc
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-DINLLAK---K------MPPLQDAGPQKCLSFSVDGS--RFAAG  130 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-~~~~~~~---~------~~~~~~~~~v~~~~~~~~~~--~l~~~  130 (340)
                      .+-|.++.|...|.+||+|..+|.|.++.-..... ...+...   +      .....-...|..+.|.++++  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            35588999999999999999999999997654331 1111111   0      11122346788999998654  56667


Q ss_pred             cCCCcEEEEeCCCCceee-----------------------------------cc-ccCccceeEEEecCCCCeEEEeeC
Q 019482          131 GVDGHLRIMHWPSLRIIL-----------------------------------DE-PKAHKSVLDMDFSLDSEFLATTST  174 (340)
Q Consensus       131 ~~dg~i~~~d~~~~~~~~-----------------------------------~~-~~~~~~i~~~~~~~~~~~l~~~~~  174 (340)
                      ..|.+|++|.+.......                                   .+ ..|.-.|.++.++.|+..++++. 
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence            789999999875321110                                   01 12333688999999999998875 


Q ss_pred             CCeEEEEEccCCee---EEEeecCC----CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE----eeee--
Q 019482          175 DGSARIWKTEDGVA---WTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI----GHKR--  241 (340)
Q Consensus       175 d~~v~iwd~~~~~~---~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~--  241 (340)
                      |-.|.+|+++-...   +..++++.    ...|++..|+|..-..    ++.++..|+|++-|++....-    +.+.  
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~----f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV----FVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE----EEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            78999999874322   22222221    2358899999987654    566788999999999853210    0011  


Q ss_pred             ----------ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC-ceEeeccccccc-----------cc---ceeeEEE
Q 019482          242 ----------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHL-----------GT---SIALVEF  296 (340)
Q Consensus       242 ----------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~-----------~~---~i~~~~~  296 (340)
                                ..-..|..+.|+++|+|+++-.. -+|++||+.. .+++... ..|.           ..   .-..++|
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~-~vh~~lr~kLc~lYEnD~IfdKFec~~  337 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY-PVHEYLRSKLCSLYENDAIFDKFECSW  337 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE-eehHhHHHHHHHHhhccchhheeEEEE
Confidence                      11246788999999999998754 5799999954 3333222 2221           11   2356789


Q ss_pred             ecCCeEEEEEecCCcEEEEEecC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +-++.+++||+....++++++..
T Consensus       338 sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  338 SGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             cCCcceEecccccceEEEecCCC
Confidence            99999999999999999999543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=6.5e-13  Score=114.86  Aligned_cols=218  Identities=16%  Similarity=0.125  Sum_probs=134.5

Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .+.++|.+..+. ..+.       .....+.+..|+|||+.|+..+.+   ..|.+||+.+++... +...........|
T Consensus       199 ~l~i~d~dG~~~-~~l~-------~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~w  269 (448)
T PRK04792        199 QLMIADYDGYNE-QMLL-------RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRF  269 (448)
T ss_pred             EEEEEeCCCCCc-eEee-------cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeE
Confidence            466667655432 1221       244678889999999988876532   358899998876432 2222233457899


Q ss_pred             cCCCCeEEE-eeCCCe--EEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          163 SLDSEFLAT-TSTDGS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       163 ~~~~~~l~~-~~~d~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      +|||+.|+. .+.++.  |+++|+++++.. .+.. +........|+||++.+++  .........|.++|+.+++... 
T Consensus       270 SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~-~~~~~~~p~wSpDG~~I~f--~s~~~g~~~Iy~~dl~~g~~~~-  344 (448)
T PRK04792        270 SPDGKKLALVLSKDGQPEIYVVDIATKALT-RITR-HRAIDTEPSWHPDGKSLIF--TSERGGKPQIYRVNLASGKVSR-  344 (448)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEEEE--EECCCCCceEEEEECCCCCEEE-
Confidence            999998765 455664  778888776543 3332 2234677899999997422  1111233568888888776532 


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCC-C--cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec-CCcEEEE
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK-EWGAMIT  315 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iw  315 (340)
                      +..........+|+|||++|+..+.+ +  .|.++|+.+++..... ...   ......|+|||+.|+..+. ++.-.+|
T Consensus       345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~  420 (448)
T PRK04792        345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT-STR---LDESPSVAPNGTMVIYSTTYQGKQVLA  420 (448)
T ss_pred             EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc-CCC---CCCCceECCCCCEEEEEEecCCceEEE
Confidence            22222333457899999999887653 3  4666788777654322 111   2234589999988776554 4444455


Q ss_pred             EecCCC
Q 019482          316 KLTVPA  321 (340)
Q Consensus       316 ~~~~~~  321 (340)
                      -++...
T Consensus       421 ~~~~~G  426 (448)
T PRK04792        421 AVSIDG  426 (448)
T ss_pred             EEECCC
Confidence            554444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=8.7e-13  Score=113.19  Aligned_cols=217  Identities=15%  Similarity=0.029  Sum_probs=129.8

Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE---EEccCC--CcEEEEeCCCCceeeccccCccceeEE
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF---AAGGVD--GHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      .|.+.|.+.... ..+..       ....+..-+|+|||+.+   ++...+  ..|.+.++.+++... +..........
T Consensus       166 ~l~~~d~dG~~~-~~lt~-------~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p  236 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQ-------EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMP  236 (428)
T ss_pred             eEEEEcCCCCCc-eEccc-------CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccce
Confidence            466666655432 22211       23455677999999752   244444  358888888775432 22333445568


Q ss_pred             EecCCCCeEEEeeC-CC----eEEEEEccCC--eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEEC
Q 019482          161 DFSLDSEFLATTST-DG----SARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDI  231 (340)
Q Consensus       161 ~~~~~~~~l~~~~~-d~----~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~  231 (340)
                      +|+|||+.|+..+. +|    .+..|++..+  .....+...........+|+|||+.++    ++...++  .|.++++
T Consensus       237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~La----f~s~~~g~~~ly~~~~  312 (428)
T PRK01029        237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLV----FVSNKDGRPRIYIMQI  312 (428)
T ss_pred             EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEE----EEECCCCCceEEEEEC
Confidence            99999998886653 22    3444776653  122333322223346789999999732    2333344  4555555


Q ss_pred             CC-CcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482          232 ST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       232 ~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      .. +.....+......+....|+|||+.|+..+.+   ..|.+||+.+++.......   ...+....|+|||+.|+...
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEE
Confidence            42 22233344444566788999999999876543   4699999998877554321   23567899999998877543


Q ss_pred             -cCC--cEEEEEec
Q 019482          308 -KEW--GAMITKLT  318 (340)
Q Consensus       308 -~dg--~i~iw~~~  318 (340)
                       .++  .+.++++.
T Consensus       390 ~~~g~~~L~~vdl~  403 (428)
T PRK01029        390 GNSNESELYLISLI  403 (428)
T ss_pred             CCCCCceEEEEECC
Confidence             333  45555554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.61  E-value=1.1e-11  Score=101.48  Aligned_cols=266  Identities=12%  Similarity=0.013  Sum_probs=161.3

Q ss_pred             CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec----------CCCEEEEEecCceeeeeeccc
Q 019482           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLLAK  104 (340)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~  104 (340)
                      +.+.+.+.+        .....-.+..-. ....+ ++|||+.|+.+..          +..|.+||..+.+...++...
T Consensus        27 ~~v~ViD~~--------~~~v~g~i~~G~-~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p   96 (352)
T TIGR02658        27 TQVYTIDGE--------AGRVLGMTDGGF-LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP   96 (352)
T ss_pred             ceEEEEECC--------CCEEEEEEEccC-CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC
Confidence            667777765        233333333322 23334 9999998876655          678999999999887776543


Q ss_pred             cCCCCCCCCCeEEEEEecCCCeEEEcc-C-CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEE
Q 019482          105 KMPPLQDAGPQKCLSFSVDGSRFAAGG-V-DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (340)
Q Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd  182 (340)
                      ..+.+........++++|||++|++.. . +..|.+.|+.+++.+..+.-.. ...-+..+++..+ +- +.||......
T Consensus        97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~-~~-~~Dg~~~~v~  173 (352)
T TIGR02658        97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF-MH-CRDGSLAKVG  173 (352)
T ss_pred             CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE-EE-eecCceEEEE
Confidence            322222233445789999999998766 3 6889999999998877665422 2222223222222 21 2344444433


Q ss_pred             ccC-CeeE-EEeec-CC-CCce-eeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCc-----EEeeeec-------cC
Q 019482          183 TED-GVAW-TFLTR-NS-DEKI-ELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWN-----KIGHKRL-------LR  244 (340)
Q Consensus       183 ~~~-~~~~-~~~~~-~~-~~~v-~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~~~~~-------~~  244 (340)
                      +.+ ++.. ..... +. ..++ ..-.|.+ +++.     +..... |.|.+.|+....     ....+..       ..
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~-----~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP  247 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL-----VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP  247 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCCcE-----EEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence            322 2211 11000 00 0000 1114455 7775     333333 999999964432     2221111       12


Q ss_pred             CCeeEEEECCCCCEEEEeeC----------CCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEe-cCCcE
Q 019482          245 KPASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGA  312 (340)
Q Consensus       245 ~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i  312 (340)
                      +.+.-++++|+++.+++...          .+.|.++|..+++.+..+..   +..+..++++||++ +|++.. .++.|
T Consensus       248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~V  324 (352)
T TIGR02658       248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTL  324 (352)
T ss_pred             CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcE
Confidence            23345999999999888531          25799999999999987765   44799999999999 777666 57889


Q ss_pred             EEEEecCCCC
Q 019482          313 MITKLTVPAD  322 (340)
Q Consensus       313 ~iw~~~~~~~  322 (340)
                      .+.|....+.
T Consensus       325 sViD~~t~k~  334 (352)
T TIGR02658       325 YIFDAETGKE  334 (352)
T ss_pred             EEEECcCCeE
Confidence            9999865543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.60  E-value=1.6e-13  Score=106.96  Aligned_cols=255  Identities=12%  Similarity=0.161  Sum_probs=187.9

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .|.+...++||.+.|++...-|..+-+++.+.|.+++||--.+...-..-...     ....+++++.+.++...|++|-
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-----~mP~~~~~~~y~~e~~~L~vg~   87 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-----YMPSPCSAMEYVSESRRLYVGQ   87 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-----hCCCCceEeeeeccceEEEEEE
Confidence            45555678999999999999898888999999999999965543322111111     1347889999999999999999


Q ss_pred             CCCcEEEEeCC----CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482          132 VDGHLRIMHWP----SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       132 ~dg~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (340)
                      ..|++.-+.+.    ....+.....|...+..+-|+....++++.+.|..+.---.+.+..+.......  ...++.+.-
T Consensus        88 ~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~  165 (404)
T KOG1409|consen   88 DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDA  165 (404)
T ss_pred             ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceee
Confidence            99999888654    344556667788899999999888999999998877655555554433222111  111111111


Q ss_pred             CCCcceEEEEEecCCcceEEEEEC--CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                      .       +...+...+.+..-.+  ....++..+.+|...+.+++|.|..+.+++|..|..+.+||+...+-......+
T Consensus       166 ~-------~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g  238 (404)
T KOG1409|consen  166 L-------YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG  238 (404)
T ss_pred             E-------EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence            1       2455555555554443  445678889999999999999999999999999999999999876655555566


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      | ...|..+...+--+.+++++.||.|.+|+++...
T Consensus       239 h-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  239 H-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             c-hhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            6 5688888887778899999999999999998543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.60  E-value=1e-13  Score=122.48  Aligned_cols=198  Identities=14%  Similarity=0.057  Sum_probs=156.8

Q ss_pred             CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc----ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      .+....+.-+.+.++.+..+..+.+||...+....+......    ...-+.++++.-++++|+.-+.|.+|+....+..
T Consensus        89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p  168 (967)
T KOG0974|consen   89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP  168 (967)
T ss_pred             cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence            334445555677888888899999999887776665544332    1222344667778999999999999998743333


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe-eeeccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  268 (340)
                      ..+ ..|++.+.++.|+-||.+     +++.++|.++++|++.+.+... ...+|...+..+.|.|+  .++++++|.+.
T Consensus       169 ~~l-~GHeG~iF~i~~s~dg~~-----i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  169 IRL-KGHEGSIFSIVTSLDGRY-----IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             cee-cccCCceEEEEEccCCcE-----EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEE
Confidence            334 457788999999999998     8999999999999999988765 66788999999999998  99999999999


Q ss_pred             EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ++|+....+.. .+ ..|....|+.++..++...++|++.|+.+++|++....
T Consensus       241 rvW~~~~~~l~-~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  241 RVWGVNGTQLE-VY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEEecccceeh-hh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            99976554443 33 56767899999999999999999999999999987543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.56  E-value=2.1e-12  Score=107.68  Aligned_cols=192  Identities=19%  Similarity=0.139  Sum_probs=153.9

Q ss_pred             cCCCeEEEccCCCcEEEEeCCCCceeeccccCc---cceeEEEec--------------------CCCCeEEEeeCCCeE
Q 019482          122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFS--------------------LDSEFLATTSTDGSA  178 (340)
Q Consensus       122 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~--------------------~~~~~l~~~~~d~~v  178 (340)
                      |...++|....||.+++|+...++..+.+....   +...+..|.                    .+...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            345689999999999999998877655543321   233333332                    123457778888999


Q ss_pred             EEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC
Q 019482          179 RIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (340)
Q Consensus       179 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~  257 (340)
                      .+|++..++....+. ..|.+.|.++.++.+-..     +.+++.|+.+..|+....+.++........+.+++.+|||+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c-----iyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC-----IYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCc-----eEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            999999999988887 677788999998887665     89999999999999999999988888888999999999999


Q ss_pred             EEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC-----CeEE-EEEecCCcEEEEEecCCCC
Q 019482          258 YLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-----QRVV-LTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       258 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l-~~~~~dg~i~iw~~~~~~~  322 (340)
                      .+++++  +.|++||+++.+.+..+ .+| .++|+.++|.-+     |.++ .+...+..+.+|.+....+
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~f-tgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~k  224 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITF-TGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDK  224 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEe-cCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccc
Confidence            999986  57999999999999877 467 789999999887     5554 4555677899999887543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=2.9e-13  Score=112.39  Aligned_cols=197  Identities=12%  Similarity=0.102  Sum_probs=151.1

Q ss_pred             eEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (340)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  146 (340)
                      ..++++.-..-|++++....|+-++++.+.....+..       ..+.++++..++...+|++|+.+|.|..||.++...
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-------~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr  209 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-------DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR  209 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEcccccccccccc-------ccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence            3455554333344444444588889988877655543       347899999999888999999999999999987654


Q ss_pred             eeccc------cCcc-----ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          147 ILDEP------KAHK-----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       147 ~~~~~------~~~~-----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      +..+.      .+..     .|+++.|+.+|-.+++|+.+|.+.|||++..+++..-.....-+|..+.|.+.+...   
T Consensus       210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~---  286 (703)
T KOG2321|consen  210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN---  286 (703)
T ss_pred             heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc---
Confidence            43321      1222     599999999999999999999999999999999877766666789999998774432   


Q ss_pred             EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          216 CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                       .+.+.+...++|||-.+|+....+... ..++.+++-|++.+++++.+++.+..|=+..
T Consensus       287 -~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  287 -KVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS  344 (703)
T ss_pred             -eEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence             455567788999999999987666543 4589999999999999999998888887655

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.5e-10  Score=91.67  Aligned_cols=279  Identities=11%  Similarity=0.147  Sum_probs=171.1

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      .+..+=++|+|+..   .|..+..   .+..+.+..|.+++....+  +......+.++  +...++++++|++++++..
T Consensus        39 ~~nptyl~~~~~~~---~LY~v~~---~~~~ggvaay~iD~~~G~L--t~ln~~~~~g~--~p~yvsvd~~g~~vf~AnY  108 (346)
T COG2706          39 LGNPTYLAVNPDQR---HLYVVNE---PGEEGGVAAYRIDPDDGRL--TFLNRQTLPGS--PPCYVSVDEDGRFVFVANY  108 (346)
T ss_pred             cCCCceEEECCCCC---EEEEEEe---cCCcCcEEEEEEcCCCCeE--EEeeccccCCC--CCeEEEECCCCCEEEEEEc
Confidence            34456678888543   3333332   3347779999999765444  22222233332  3488999999999999876


Q ss_pred             C-CCEEEEEecCceeeeeecc--ccCCC----CCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeecc---cc
Q 019482           84 N-GGCKLFEVYGGATDINLLA--KKMPP----LQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDE---PK  152 (340)
Q Consensus        84 d-~~i~iw~~~~~~~~~~~~~--~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~---~~  152 (340)
                      . |.|.++.++..........  .+...    -+....+....+.|++++|++..- --.|.+|++..+......   ..
T Consensus       109 ~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~  188 (346)
T COG2706         109 HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK  188 (346)
T ss_pred             cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC
Confidence            5 7899999966432222111  00000    111223889999999999888753 236999999876543211   12


Q ss_pred             CccceeEEEecCCCCeEEEee-CCCeEEEEEccCC-eeEEEee------cC--CCCceeeEEEccCCCcceEEEEEecCC
Q 019482          153 AHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG-VAWTFLT------RN--SDEKIELCRFSKDGTKPFLFCTVQRGD  222 (340)
Q Consensus       153 ~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~-~~~~~~~------~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (340)
                      .......|.|+|++++..... -+++|.+|..... ..+..++      ..  .......+..++||+++    -++.-.
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL----YasNRg  264 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL----YASNRG  264 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEE----EEecCC
Confidence            234678999999999866554 5899999998763 2222222      11  12356788999999963    233444


Q ss_pred             cceEEEEECCCC--cE--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-cEEEEec--cCceEeecccccccccceeeEE
Q 019482          223 KALLAVYDISTW--NK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-DICVVDV--KKMEINHWSKRLHLGTSIALVE  295 (340)
Q Consensus       223 d~~i~i~d~~~~--~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~  295 (340)
                      ...|.+|.+...  +.  +.....+....+...++|.|++|+++.+++ .|.+|..  .+|++-....... .....++.
T Consensus       265 ~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~-~p~Pvcv~  343 (346)
T COG2706         265 HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAV-VPEPVCVK  343 (346)
T ss_pred             CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccC-CCCcEEEE
Confidence            557888887643  22  222223334467899999999999998754 5888865  4565544433233 22344555


Q ss_pred             Ee
Q 019482          296 FC  297 (340)
Q Consensus       296 ~~  297 (340)
                      |.
T Consensus       344 f~  345 (346)
T COG2706         344 FL  345 (346)
T ss_pred             Ec
Confidence            53

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=3e-13  Score=119.50  Aligned_cols=191  Identities=13%  Similarity=0.150  Sum_probs=149.5

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      +...++.+..+..+.+||........+....+..   .-....-+.++++.-++++|+.-+.|.+|+....+....+.+|
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~---~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH  174 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERC---TLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH  174 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceE---EEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence            4567888888888999998877655444322110   0012223345666779999999999999998755555567889


Q ss_pred             ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      .+.|..+.++-||.++++.|.|.++++|++++.+........|...+..+.|.|+ .      +++.+.|.+.++|+..-
T Consensus       175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~------i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-R------IITVGEDCTCRVWGVNG  247 (967)
T ss_pred             CCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-e------eEEeccceEEEEEeccc
Confidence            9999999999999999999999999999999988877444467788999999999 3      89999999999997654


Q ss_pred             CcEEeeeeccC-CCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          234 WNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       234 ~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                       ..+..+..|. ..+..++..++...+++++.|+.+++||+..
T Consensus       248 -~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  248 -TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             -ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence             3334555554 5789999999999999999999999999865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.53  E-value=1.2e-11  Score=100.81  Aligned_cols=144  Identities=16%  Similarity=0.219  Sum_probs=115.0

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCC-CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      +|...|.-..+.-+++-++.|..|| .+-|+|.++++.....        ..-+.|.++..+|+|++++.+.....+.+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--------~~lg~I~av~vs~dGK~~vvaNdr~el~vi  428 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--------KDLGNIEAVKVSPDGKKVVVANDRFELWVI  428 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--------CCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence            4666788888888888899999998 8999999888743322        144789999999999999999999999999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCCeEEEeeCC----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      |+++++....-....+-|+.++|+|+++++|-+--+    ..|+++|+..++.......  .+.-.+.+|.|+++++++
T Consensus       429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCCcEEEE
Confidence            999998766555555689999999999999987655    4799999998877554432  223467889999998654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.52  E-value=8.2e-12  Score=104.59  Aligned_cols=185  Identities=15%  Similarity=0.162  Sum_probs=127.7

Q ss_pred             EEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482          128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       128 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (340)
                      ++-..++.|.+.|..+.+.+..+......-..+.++|||+++++++.||.|.++|+.+++.+.++....  ....+++++
T Consensus        10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i~~s~   87 (369)
T PF02239_consen   10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGIAVSP   87 (369)
T ss_dssp             EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEEEE--
T ss_pred             EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceEEEcC
Confidence            445568999999999998888776654444557899999999999999999999999999999987543  478999999


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-------CCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEe
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEIN  279 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~  279 (340)
                      ||+++    +++....+.+.++|.++.++++.+...       ...+..+.-+|....+++. -+.+.|.+.|....+.+
T Consensus        88 DG~~~----~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~  163 (369)
T PF02239_consen   88 DGKYV----YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL  163 (369)
T ss_dssp             TTTEE----EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred             CCCEE----EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence            99973    345567899999999999988877643       2356778788888755544 45588888898765443


Q ss_pred             ecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEecC
Q 019482          280 HWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTV  319 (340)
Q Consensus       280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~~~  319 (340)
                      ... ....+.......|+|++++++.+ ..+..+-+++...
T Consensus       164 ~~~-~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  164 KVT-TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             EEE-EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             cee-eecccccccccccCcccceeeecccccceeEEEeecc
Confidence            221 11224567889999999987664 4556777777653

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.52  E-value=1.7e-10  Score=107.01  Aligned_cols=298  Identities=11%  Similarity=0.131  Sum_probs=181.0

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|.++.+.++...  +++       +..+|.|.++..+++...    ...+. ...-+..|.+++||||+..|+..+
T Consensus        74 ~~~~ivs~~yl~d~~~--l~~-------~~~~Gdi~~~~~~~~~~~----~~~E~-VG~vd~GI~a~~WSPD~Ella~vT  139 (928)
T PF04762_consen   74 PNDKIVSFQYLADSES--LCI-------ALASGDIILVREDPDPDE----DEIEI-VGSVDSGILAASWSPDEELLALVT  139 (928)
T ss_pred             CCCcEEEEEeccCCCc--EEE-------EECCceEEEEEccCCCCC----ceeEE-EEEEcCcEEEEEECCCcCEEEEEe
Confidence            3567888889886543  232       223444777755542221    11111 122356799999999999999999


Q ss_pred             cCCCEEEEEecCc-----------------------eeeeeeccccC---------CC--------CCCCCCeEEEEEec
Q 019482           83 TNGGCKLFEVYGG-----------------------ATDINLLAKKM---------PP--------LQDAGPQKCLSFSV  122 (340)
Q Consensus        83 ~d~~i~iw~~~~~-----------------------~~~~~~~~~~~---------~~--------~~~~~~v~~~~~~~  122 (340)
                      .++++.+.+.+-.                       +...++.+...         +.        +.....-..++|-.
T Consensus       140 ~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG  219 (928)
T PF04762_consen  140 GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG  219 (928)
T ss_pred             CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC
Confidence            8888877542110                       01111111000         00        11223456789999


Q ss_pred             CCCeEEEccC---C---CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCeeEEEee
Q 019482          123 DGSRFAAGGV---D---GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLT  193 (340)
Q Consensus       123 ~~~~l~~~~~---d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~  193 (340)
                      ||.++|+.+.   .   ..++||+-+ |+.......-.+--.+++|.|.|++||+...   ...|.+|. ++|..-..+.
T Consensus       220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~  297 (928)
T PF04762_consen  220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFT  297 (928)
T ss_pred             CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEe
Confidence            9999998764   2   479999954 5543333322233457899999999998764   34577776 4555444443


Q ss_pred             c---CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeecc-CCCeeEEEECCC-CCEEEEeeCCC
Q 019482          194 R---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLL-RKPASVLSISLD-GKYLAMGSKDG  266 (340)
Q Consensus       194 ~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~-~~~i~~~~~s~~-~~~l~~~~~dg  266 (340)
                      .   .....+..+.|++|+..+     +... ...|.+|-..+..  ..+.+... ...+..+.|+|. ...|...+.+|
T Consensus       298 l~~~~~~~~v~~l~Wn~ds~iL-----Av~~-~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  298 LRFDPEEEKVIELAWNSDSEIL-----AVWL-EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG  371 (928)
T ss_pred             cCCCCCCceeeEEEECCCCCEE-----EEEe-cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC
Confidence            2   335679999999999962     2222 3349999988754  23333322 233455899994 45577776667


Q ss_pred             cEEEEecc----Cc----------------eEeec--c-----------cccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482          267 DICVVDVK----KM----------------EINHW--S-----------KRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (340)
Q Consensus       267 ~i~i~d~~----~~----------------~~~~~--~-----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  313 (340)
                      .+..+++.    .+                ..+..  +           .......+|..++|++++..+++-..||.+.
T Consensus       372 ~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~  451 (928)
T PF04762_consen  372 QYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLS  451 (928)
T ss_pred             cEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEE
Confidence            66655432    11                00000  0           0011246899999999998899999999999


Q ss_pred             EEEecCCCC
Q 019482          314 ITKLTVPAD  322 (340)
Q Consensus       314 iw~~~~~~~  322 (340)
                      +|.+.....
T Consensus       452 ~~~~~~~~~  460 (928)
T PF04762_consen  452 IYEWDLKNM  460 (928)
T ss_pred             EEEecCCCc
Confidence            999876543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.52  E-value=1.7e-13  Score=127.17  Aligned_cols=205  Identities=16%  Similarity=0.240  Sum_probs=160.7

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEE
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  137 (340)
                      .++.+-..|.++.-+|...+.++|+.||.+++|....+..+......      ....|+.+.|+.+|+.+..+..||.+.
T Consensus      2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~------g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA------GNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred             EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc------CcchhhhhhhcccCCceeeeccCCcee
Confidence            34455667888888999999999999999999999877765544332      237889999999999999999999999


Q ss_pred             EEeCCCCceeeccccCccceeEEEecCCCCeEEEee---CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      +|.+. .+.......|.....++.|-.  ..+++++   .++.+.+||..-.....-+...|.+.++++++-|..+.   
T Consensus      2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~ql--- 2350 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQL--- 2350 (2439)
T ss_pred             ecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceE---
Confidence            99977 455666777888888888874  5677765   56899999975432222222456678999999999886   


Q ss_pred             EEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  286 (340)
                        +++|+.+|.+++||++..+..+.+..         +. ...++++|+..|.++||++.....++.+...|
T Consensus      2351 --lisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2351 --LISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred             --EEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence              89999999999999998776655443         44 56799999999999999999887776665444

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.51  E-value=3.8e-12  Score=97.39  Aligned_cols=253  Identities=14%  Similarity=0.059  Sum_probs=157.1

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      ..++.+.|...+.++.+ +.+.    +...+.|.+|..+.........+.....+..  ....++.|++.+..++++..+
T Consensus        70 s~~~dm~w~~~~~~g~~-~l~~----a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~--~~~lslD~~~~~~~i~vs~s~  142 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDF-NLLD----AHARGQIQLYRNDEDESSVHLRGLSSKKISV--VEALSLDISTSGTKIFVSDSR  142 (339)
T ss_pred             cccceeeeeeccCCccc-eeee----ccccceEEEEeeccceeeeeecccchhhhhh--eeeeEEEeeccCceEEEEcCC
Confidence            44677888875555442 2222    4567789999887544333222222111111  134578899999999999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCC-CCceeec-cccCccceeEEE
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP-SLRIILD-EPKAHKSVLDMD  161 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~-~~~~~~~-~~~~~~~i~~~~  161 (340)
                      |.+.+-+...........     -..|.-++....|+. +.+.+++|+.|+.+..||++ .++.+.. .+.|+..|.++.
T Consensus       143 G~~~~v~~t~~~le~vq~-----wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~  217 (339)
T KOG0280|consen  143 GSISGVYETEMVLEKVQT-----WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY  217 (339)
T ss_pred             CcEEEEecceeeeeeccc-----ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence            998865554433222111     113777888888876 55789999999999999998 4444444 445667899998


Q ss_pred             ecC-CCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---
Q 019482          162 FSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---  236 (340)
Q Consensus       162 ~~~-~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---  236 (340)
                      -+| ...++++|+.|..|++||.|+ ++++..-.  ..+.|+.+.++|.-...    ++.+..-+-.++-+...+..   
T Consensus       218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~----lL~~CMh~G~ki~~~~~~~~e~~  291 (339)
T KOG0280|consen  218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHR----LLAACMHNGAKILDSSDKVLEFQ  291 (339)
T ss_pred             cCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhH----HHHHHHhcCceEEEecccccchh
Confidence            887 678999999999999999994 55554433  34679999999976543    22333333355555544322   


Q ss_pred             --EeeeeccCCCeeEEEECCCCCEEEEee-CCCcEE-EEeccC
Q 019482          237 --IGHKRLLRKPASVLSISLDGKYLAMGS-KDGDIC-VVDVKK  275 (340)
Q Consensus       237 --~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~-i~d~~~  275 (340)
                        ......|.+-...-.|.....+|++++ .|+.++ +|-.-+
T Consensus       292 ~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  292 IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             eeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence              222333444344444533345677754 355544 554333

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=2.1e-11  Score=101.24  Aligned_cols=241  Identities=12%  Similarity=0.137  Sum_probs=153.9

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC--eEEE-----EecCCCEEEEEecCceeeeeecccc
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD--DFVC-----STTNGGCKLFEVYGGATDINLLAKK  105 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~-----~~~d~~i~iw~~~~~~~~~~~~~~~  105 (340)
                      ..+.+.+|+.....     ....    +-|...|..+.++|.+.  .+|+     .+.-+.++||.............+ 
T Consensus       144 v~nev~f~~~~~f~-----~~~~----kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k-  213 (566)
T KOG2315|consen  144 VSNEVQFYDLGSFK-----TIQH----KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK-  213 (566)
T ss_pred             hcceEEEEecCCcc-----ceee----eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc-
Confidence            45568888876421     1111    22567899999999743  4443     344568999988632221111111 


Q ss_pred             CCCCCCCCCeEEEEEecCCC-eEEEcc--C---------CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-
Q 019482          106 MPPLQDAGPQKCLSFSVDGS-RFAAGG--V---------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-  172 (340)
Q Consensus       106 ~~~~~~~~~v~~~~~~~~~~-~l~~~~--~---------dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-  172 (340)
                        .+-. ..=-.+.|++-|. +|+.++  -         ..++++++++...... -....++|.++.|+|+++.++++ 
T Consensus       214 --sFFk-adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V-~L~k~GPVhdv~W~~s~~EF~Vvy  289 (566)
T KOG2315|consen  214 --SFFK-ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV-PLLKEGPVHDVTWSPSGREFAVVY  289 (566)
T ss_pred             --cccc-cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE-ecCCCCCceEEEECCCCCEEEEEE
Confidence              0111 1223477888666 333222  2         2468888877333333 33456799999999999876654 


Q ss_pred             -eCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEE
Q 019482          173 -STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (340)
Q Consensus       173 -~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  251 (340)
                       -.-..+.|||++ +.++..+.   .++-+++-|+|.|+.+.+  ...+.-.|.|-+||+.+.+.+..+....  -+-+.
T Consensus       290 GfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~l--AGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~e  361 (566)
T KOG2315|consen  290 GFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILL--AGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFE  361 (566)
T ss_pred             ecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEE--eecCCCCCceEEEeccchhhccccccCC--ceEEE
Confidence             456789999986 66766664   356788999999997432  2334456899999999988776666544  35578


Q ss_pred             ECCCCCEEEEeeC------CCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482          252 ISLDGKYLAMGSK------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       252 ~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      |+|||.++++++.      |+.++||+...........    ......+.|-|-
T Consensus       362 W~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f----~sEL~qv~W~P~  411 (566)
T KOG2315|consen  362 WSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF----KSELLQVEWRPF  411 (566)
T ss_pred             EcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhh----hHhHhheeeeec
Confidence            9999999999864      7889999985543332221    124777888763

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.48  E-value=3.7e-10  Score=106.78  Aligned_cols=249  Identities=10%  Similarity=0.056  Sum_probs=162.9

Q ss_pred             eeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCC-------CCCCCCCeEEEEEecCCCeEEEcc-CCCcE
Q 019482           66 PMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-------PLQDAGPQKCLSFSVDGSRFAAGG-VDGHL  136 (340)
Q Consensus        66 v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i  136 (340)
                      ...++++++ +..+++-..++.|+++|..... ...+......       ....-.....+++.++++.|+++. ..+.|
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            456888875 5566666677889999986543 2222110000       001123468899999888666654 45679


Q ss_pred             EEEeCCCCceeecccc----------C-------ccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecC---
Q 019482          137 RIMHWPSLRIILDEPK----------A-------HKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRN---  195 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~----------~-------~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---  195 (340)
                      +++|+.++... .+.+          .       -.....++++| ++..+++.+.++.|++||..++.... +...   
T Consensus       649 r~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~  726 (1057)
T PLN02919        649 REIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE  726 (1057)
T ss_pred             EEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence            99998765432 1111          0       11346799999 56666777778999999987765432 2110   


Q ss_pred             -----------CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-------------c--------
Q 019482          196 -----------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------L--------  243 (340)
Q Consensus       196 -----------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------~--------  243 (340)
                                 .-.....++++|++..+    .++...++.|++||+.++.......+             .        
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~L----YVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKEL----YIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEE----EEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence                       01235679999999863    45667789999999987653211100             0        


Q ss_pred             CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc-----------cccceeeEEEecCCeEEEEEecCCcE
Q 019482          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH-----------LGTSIALVEFCPTQRVVLTASKEWGA  312 (340)
Q Consensus       244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~dg~i  312 (340)
                      -.....++++++|+.+++-..++.|++||..++........+.           .-.....++++++|+++++-+.++.|
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            0123578999999988888889999999998876653321110           01256789999999999999999999


Q ss_pred             EEEEecCCC
Q 019482          313 MITKLTVPA  321 (340)
Q Consensus       313 ~iw~~~~~~  321 (340)
                      ++|++....
T Consensus       883 rvid~~~~~  891 (1057)
T PLN02919        883 RYLDLNKGE  891 (1057)
T ss_pred             EEEECCCCc
Confidence            999987543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.47  E-value=1e-10  Score=95.61  Aligned_cols=223  Identities=20%  Similarity=0.168  Sum_probs=157.0

Q ss_pred             EcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCC-CCC---CCCCeEEEE-Eec-CCCeEEEccCCCcEEEEeCCCC
Q 019482           71 VNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQ---DAGPQKCLS-FSV-DGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        71 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~---~~~~v~~~~-~~~-~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      .+.||+.++.. ..|.|.+||..+......-..-... ...   ...+..-+. |++ +|.+++..++ |...+.+...+
T Consensus       274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            35578877653 3467999999887654332221111 000   111222222 444 7889988875 77888776555


Q ss_pred             ceeeccccCccceeEEEecCCCCeEEEeeCCC-eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      -.++  .++...|.-..+.-+++-++.|..|| .+-|+|.++++..... .. -+.|.++..+|+|+.     ++.+.+.
T Consensus       352 ~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-~~-lg~I~av~vs~dGK~-----~vvaNdr  422 (668)
T COG4946         352 YSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-KD-LGNIEAVKVSPDGKK-----VVVANDR  422 (668)
T ss_pred             eeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-CC-ccceEEEEEcCCCcE-----EEEEcCc
Confidence            5443  24555688888888888899999998 9999999887654433 23 356999999999997     7788888


Q ss_pred             ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC----cEEEEeccCceEeecccccccccceeeEEEecC
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      .+|.+.|+.+++....-+...+-|+.+.|+|+++++|-+--+|    .|+++|+.+++.......   ...=.+-+|.||
T Consensus       423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d  499 (668)
T COG4946         423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPD  499 (668)
T ss_pred             eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCCC
Confidence            9999999999987655555567799999999999999987665    699999999887765432   223456689999


Q ss_pred             CeEEEEEe
Q 019482          300 QRVVLTAS  307 (340)
Q Consensus       300 ~~~l~~~~  307 (340)
                      +++|.--+
T Consensus       500 ~ryLYfLs  507 (668)
T COG4946         500 GRYLYFLS  507 (668)
T ss_pred             CcEEEEEe
Confidence            99876554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.2e-10  Score=97.91  Aligned_cols=197  Identities=11%  Similarity=0.027  Sum_probs=126.9

Q ss_pred             CCeEEEEEecCCCe-EEEccC---CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-eCC--CeEEEEEccC
Q 019482          113 GPQKCLSFSVDGSR-FAAGGV---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STD--GSARIWKTED  185 (340)
Q Consensus       113 ~~v~~~~~~~~~~~-l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d--~~v~iwd~~~  185 (340)
                      +......|+|||+. ++..+.   +..|.++|+.+++..... ...+......|+|||+.++.. +.+  ..|.++|+..
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence            36678999999984 554333   356999999887654433 344455677899999876644 333  4688888877


Q ss_pred             CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC
Q 019482          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD  265 (340)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  265 (340)
                      ++. ..+.... .......|+|||+.+++  .........|.++|+.+++....... ..  ....|+|||++|+.....
T Consensus       267 g~~-~~LT~~~-~~d~~p~~SPDG~~I~F--~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        267 KTL-TQITNYP-GIDVNGNFVEDDKRIVF--VSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CcE-EEcccCC-CccCccEECCCCCEEEE--EECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcC
Confidence            764 3343222 22446789999997532  11122234788999988776433222 11  124899999998877643


Q ss_pred             ---------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-CcEEEEEecCCC
Q 019482          266 ---------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLTVPA  321 (340)
Q Consensus       266 ---------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~  321 (340)
                               ..|.+.|+.+++.......    .......|+|||+.|+..+.+ +.-.++-++...
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYIRRLTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCeEECCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence                     3688889988876544321    133468899999987766654 455577666655

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.46  E-value=1.7e-11  Score=102.43  Aligned_cols=192  Identities=17%  Similarity=0.141  Sum_probs=149.8

Q ss_pred             cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEe------c--------------CCCeEEEcc
Q 019482           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS------V--------------DGSRFAAGG  131 (340)
Q Consensus        72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~  131 (340)
                      .|.+.++|....||.+++|+...++....+...    ..-.+...+..|.      |              +-..++-|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~----~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPI----ASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccc----hhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            345679999999999999999988765555321    1233445555553      1              123677788


Q ss_pred             CCCcEEEEeCCCCceeeccc--cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          132 VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      ..|.|.+|++..++...++.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+.... ..+.+++.+||+
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~-~~~~sl~is~D~  156 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK-PLVSSLCISPDG  156 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC-CccceEEEcCCC
Confidence            89999999999988776665  455689999999988999999999999999999988888887544 468999999998


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC-----CCEEEEe-eCCCcEEEEeccC
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-----GKYLAMG-SKDGDICVVDVKK  275 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~-~~dg~i~i~d~~~  275 (340)
                      ..     ++++  .++|++||+.+++.+..+.+|.++|++++|.-+     |.+++++ ..+..+.+|-...
T Consensus       157 ~~-----l~~a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  157 KI-----LLTA--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CE-----EEec--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            85     3433  467999999999999999999999999999776     6676654 3455677886654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=9.1e-12  Score=106.50  Aligned_cols=235  Identities=11%  Similarity=0.106  Sum_probs=169.6

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecc--------ccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--------KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  135 (340)
                      ....+++|+....++|+|+.||.+++..+.+.........        -......|.+.|.-+.|+.+.+.|-+...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            3477999999999999999999999999876543222211        11112348899999999999999999999999


Q ss_pred             EEEEeCCCCceeeccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE-EeecCCCCceeeEEEccCCCcc
Q 019482          136 LRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~  212 (340)
                      |.+|-+-.+.-.......  .+.|.++.|+.||..+...-.||.|.+=.++..+... .+++   .....+.|++|.+. 
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg---~~l~hv~ws~D~~~-  170 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG---QLLAHVLWSEDLEQ-  170 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch---heccceeecccHHH-
Confidence            999999887765544433  3468999999999999999999999888776443321 2222   12457899999987 


Q ss_pred             eEEEEEecCCcceEEEEECCCCc-------EEe----eeeccCCCeeEEEEC--------CCCCEEEEeeCCCcEEEEec
Q 019482          213 FLFCTVQRGDKALLAVYDISTWN-------KIG----HKRLLRKPASVLSIS--------LDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~-------~~~----~~~~~~~~i~~~~~s--------~~~~~l~~~~~dg~i~i~d~  273 (340)
                          ++.+-..|.+.+||....-       +..    .+......|..+.|.        ||...++++-.+|.+.|..-
T Consensus       171 ----~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  171 ----ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             ----HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence                5666778999999976321       100    111122335555553        57788999999999998866


Q ss_pred             cCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      ........+..   +-.+..+.|+++|..|+.+|.|
T Consensus       247 eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  247 ENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             cCCCCCeEEec---ccEeecceecCCCcEEEEccCc
Confidence            55443333322   3578999999999999999976

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.42  E-value=1e-10  Score=96.20  Aligned_cols=243  Identities=14%  Similarity=0.106  Sum_probs=170.9

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--------
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------  133 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------  133 (340)
                      ..-++..++|||.|.+|++....+ |.+|.-........+.         ...|..+.|+|+++||.+=+..        
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~---------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e  100 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR---------HPDVKYLDFSPNEKYLVTWSREPIIEPEIE  100 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeee---------cCCceecccCcccceeeeeccCCccChhhc
Confidence            455788999999999999988888 9999987665444432         2578999999999999986543        


Q ss_pred             -------CcEEEEeCCCCceeeccccCccc--ee-EEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceee
Q 019482          134 -------GHLRIMHWPSLRIILDEPKAHKS--VL-DMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIEL  202 (340)
Q Consensus       134 -------g~i~~~d~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~  202 (340)
                             ..+.+||+.++..+..+.....+  .. -+.|+-+.+++|-.. ...++|+++ ++.. ...+..-....+..
T Consensus       101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~d  178 (561)
T COG5354         101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILD  178 (561)
T ss_pred             cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEec-CCccccCchhhccccceee
Confidence                   35999999999988777665544  44 688998888776553 457999997 3221 11111112245888


Q ss_pred             EEEccCCCcceEEEE--EecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-----------CCCcEE
Q 019482          203 CRFSKDGTKPFLFCT--VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-----------KDGDIC  269 (340)
Q Consensus       203 ~~~~~~~~~~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----------~dg~i~  269 (340)
                      ..|+|.+...-++..  -..+...++++|.+..+..+.........-..+.|.+.|++|++--           ....++
T Consensus       179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLy  258 (561)
T COG5354         179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLY  258 (561)
T ss_pred             EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEE
Confidence            999998665432211  2346688999999998877766655555567799999999887531           135688


Q ss_pred             EEeccCceEeecccccccccceeeEEEecCCeEEEEEe--cCCcEEEEEecC
Q 019482          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMITKLTV  319 (340)
Q Consensus       270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iw~~~~  319 (340)
                      |++++...+....  . ..++|...+|.|.++.+++.+  .+-.+.+++++.
T Consensus       259 l~~~~e~~i~V~~--~-~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         259 LLRITERSIPVEK--D-LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             EEeecccccceec--c-ccccceeeeecccCCceeEEecccccceeeccccc
Confidence            8888755443332  1 257999999999987766655  566677777653

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.42  E-value=4.1e-10  Score=92.78  Aligned_cols=282  Identities=15%  Similarity=0.095  Sum_probs=179.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ...|+..++|+|   .+.+++       +.....|.+|...... .+       ..+ .| ..|..+.|+|.++||.+=+
T Consensus        31 ~~~p~~~~~~SP---~G~~l~-------~~~~~~V~~~~g~~~~-~l-------~~~-~~-~~V~~~~fSP~~kYL~tw~   90 (561)
T COG5354          31 ENWPVAYVSESP---LGTYLF-------SEHAAGVECWGGPSKA-KL-------VRF-RH-PDVKYLDFSPNEKYLVTWS   90 (561)
T ss_pred             cCcchhheeecC---cchhee-------hhhccceEEccccchh-he-------eee-ec-CCceecccCcccceeeeec
Confidence            356788899999   445566       3334447888654222 11       111 13 4699999999999999865


Q ss_pred             cCC---------------CEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482           83 TNG---------------GCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (340)
Q Consensus        83 ~d~---------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  146 (340)
                      ..+               .+.+||..++.....+......     .... -+.|+.+.+++|-.. ...++++++ +...
T Consensus        91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~-----~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~-t~n~  163 (561)
T COG5354          91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQP-----YLGWPVLKFSIDDKYVARVV-GSSLYIHEI-TDNI  163 (561)
T ss_pred             cCCccChhhccCCccccCceeEEeccCceeEeeccccCCc-----ccccceeeeeecchhhhhhc-cCeEEEEec-CCcc
Confidence            433               4899999998876665432211     1123 578998888776553 356999997 3322


Q ss_pred             e-eccccC-ccceeEEEecCCC--CeEEE-----eeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          147 I-LDEPKA-HKSVLDMDFSLDS--EFLAT-----TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       147 ~-~~~~~~-~~~i~~~~~~~~~--~~l~~-----~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      . ..+... ...|....|+|.+  ..|+.     .+.++++++|.+..+..+.+... ....-..+.|.+.|+++.+...
T Consensus       164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~  242 (561)
T COG5354         164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVM  242 (561)
T ss_pred             ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEE
Confidence            1 111111 2478899999964  34443     45678999999987666544331 1122356889999987543322


Q ss_pred             Eec-C-----CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee--CCCcEEEEeccCceEeeccccccccc
Q 019482          218 VQR-G-----DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGT  289 (340)
Q Consensus       218 ~~~-~-----~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~  289 (340)
                      .-. +     ....+.++++...... ......++|...+|.|.++.+++.+  .+-.+.++|++.. ....+.    ..
T Consensus       243 t~~ksnKsyfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~  316 (561)
T COG5354         243 THTKSNKSYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQ  316 (561)
T ss_pred             EeeecccceeccceEEEEeecccccc-eeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC----Cc
Confidence            111 1     2356888888854432 2225578999999999988777654  6778999999876 333322    23


Q ss_pred             ceeeEEEecCCeEEEEEecC---CcEEEEEec
Q 019482          290 SIALVEFCPTQRVVLTASKE---WGAMITKLT  318 (340)
Q Consensus       290 ~i~~~~~~~~~~~l~~~~~d---g~i~iw~~~  318 (340)
                      .-+.+.|+|.+++++.++-|   |.+-+|+..
T Consensus       317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             ccccccccCcccEEEEecCCccccceEEeccC
Confidence            45667788888888887765   567777653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=8.6e-11  Score=97.70  Aligned_cols=244  Identities=13%  Similarity=0.084  Sum_probs=165.9

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----------CC
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----------DG  134 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg  134 (340)
                      -+-+.|||.|.||++-...| |.+|--.+-....++.        | ..|.-+.|||..+||++-+.           ..
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~--------H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY--------H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc--------C-CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            45689999999999999999 9999765554444432        3 56888999999999998652           25


Q ss_pred             cEEEEeCCCCceeeccccCcc---ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          135 HLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      .++|||+.+|.....+....+   .-.-+.||.|++++|--.. .+|.||+..+-.++..-. -.-..|....|+|.+..
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTSNL  360 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCcce
Confidence            699999999988777655332   2234789999999988765 579999977643332211 12235889999999875


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC----------CCcEEEEeccCceEeec
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHW  281 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~  281 (340)
                      +.+..--+...-..+.+..+.+++.++....+.-.-..+-|..+|.+|+.--.          --.+.|+.++.......
T Consensus       361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve  440 (698)
T KOG2314|consen  361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE  440 (698)
T ss_pred             EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence            32211111222345677777777777766666655567888889999986421          12355666655443322


Q ss_pred             ccccccccceeeEEEecCCeEEEEEecC---CcEEEEEec-CCCCC
Q 019482          282 SKRLHLGTSIALVEFCPTQRVVLTASKE---WGAMITKLT-VPADW  323 (340)
Q Consensus       282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iw~~~-~~~~~  323 (340)
                      .  ......|...+|-|.|..+++-+..   .++.+|.++ .+..+
T Consensus       441 ~--velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~  484 (698)
T KOG2314|consen  441 V--VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP  484 (698)
T ss_pred             e--eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence            2  1224689999999999877765543   578899888 44443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.41  E-value=2.3e-09  Score=99.72  Aligned_cols=289  Identities=13%  Similarity=0.110  Sum_probs=178.4

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE-----ecCCCCeeEEEEcCCCCeEE
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-----DESEGDPMTIAVNPSGDDFV   79 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~   79 (340)
                      .++...+|.+..+ ..+++++..    .....+.+-.+.....     ......+     ....+.|.++.|-++...++
T Consensus        22 ~~~~~~~~d~~sd-~i~~~~~~~----~~~~~i~~~~~~~~~~-----~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~   91 (928)
T PF04762_consen   22 LPITATAFDSDSD-SIYFVLGPN----EIDYVIELDRFSQDGS-----VEVLASWDAPLPDDPNDKIVSFQYLADSESLC   91 (928)
T ss_pred             cccceEEEecCCC-eEEEEECCC----CcceEEEEEeeccCCc-----eeEEEeccccCCcCCCCcEEEEEeccCCCcEE
Confidence            4577788887554 344554532    2223455555543331     1111112     13456799999999999999


Q ss_pred             EEecCCCEEEE----EecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC-------------
Q 019482           80 CSTTNGGCKLF----EVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-------------  142 (340)
Q Consensus        80 ~~~~d~~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-------------  142 (340)
                      .+..+|.|.+.    +......  ...+      .-...|.+++||||...|+.++.++++.+.+-.             
T Consensus        92 ~~~~~Gdi~~~~~~~~~~~~~~--E~VG------~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   92 IALASGDIILVREDPDPDEDEI--EIVG------SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDD  163 (928)
T ss_pred             EEECCceEEEEEccCCCCCcee--EEEE------EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccc
Confidence            99999999999    4443332  1111      134789999999999999999989888776421             


Q ss_pred             --C--------Cceeecccc------------------------CccceeEEEecCCCCeEEEeeC---C---CeEEEEE
Q 019482          143 --S--------LRIILDEPK------------------------AHKSVLDMDFSLDSEFLATTST---D---GSARIWK  182 (340)
Q Consensus       143 --~--------~~~~~~~~~------------------------~~~~i~~~~~~~~~~~l~~~~~---d---~~v~iwd  182 (340)
                        .        |+.-..+.+                        ....-..++|-.||+++|+.+.   .   ..++||+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence              0        000000100                        1123456889999999998874   2   5799999


Q ss_pred             ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee----ccCCCeeEEEECCCCCE
Q 019482          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKY  258 (340)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~s~~~~~  258 (340)
                      -+ |+...+-. ...+--.+++|.|.|..+..  .-.-.....|.+|.-+. -.-..+.    .....+..+.|++|+..
T Consensus       244 Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~--~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~Wn~ds~i  318 (928)
T PF04762_consen  244 RE-GELQSTSE-PVDGLEGALSWRPSGNLIAS--SQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAWNSDSEI  318 (928)
T ss_pred             CC-ceEEeccc-cCCCccCCccCCCCCCEEEE--EEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEECCCCCE
Confidence            54 66544433 33344568999999985211  11122345677776443 2222222    33567899999999999


Q ss_pred             EEEeeCCCcEEEEeccCceE--eecccccccccceeeEEEecCC-eEEEEEecCCcEEEEEec
Q 019482          259 LAMGSKDGDICVVDVKKMEI--NHWSKRLHLGTSIALVEFCPTQ-RVVLTASKEWGAMITKLT  318 (340)
Q Consensus       259 l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~~~  318 (340)
                      ||+.-.|. |.+|-..+..-  .+.+.... ...+..+.|+|.. ..|...+.+|.+..+++.
T Consensus       319 LAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  319 LAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             EEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence            99987665 99999877542  22221111 3345669999955 456666666777666654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.41  E-value=3.9e-12  Score=118.50  Aligned_cols=195  Identities=15%  Similarity=0.225  Sum_probs=150.1

Q ss_pred             CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      +-..|.++.=+|...+-++|+.||.+++|....++.+..... ....++.+.|+.+|+.+..+..||.+.+|... .++.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence            346778888889888999999999999999887776655443 23689999999999999999999999999986 5555


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  268 (340)
                      ...+. |+.....+.|-....    +..-....++.+.+||..... .-..-..|.+..+++++-|..+.|++|+.+|.|
T Consensus      2286 ~s~qc-hnk~~~Df~Fi~s~~----~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2286 TSWQC-HNKALSDFRFIGSLL----ATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred             ecccc-CCccccceeeeehhh----hccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence            55553 344577777766322    112233467889999975322 111227888999999999999999999999999


Q ss_pred             EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCC
Q 019482          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADW  323 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~  323 (340)
                      ++||++..+..+.+..           +. ...++++|+..|.++||++..++..
T Consensus      2361 ~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred             EEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchh
Confidence            9999998877765532           44 4578999999999999999887653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=6.8e-10  Score=94.88  Aligned_cols=198  Identities=10%  Similarity=0.013  Sum_probs=123.6

Q ss_pred             CeeEEEEcCCCCe-EEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cC--CCcEE
Q 019482           65 DPMTIAVNPSGDD-FVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GV--DGHLR  137 (340)
Q Consensus        65 ~v~~~~~~~~~~~-l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--dg~i~  137 (340)
                      ......|+|||+. ++..+.+   ..|.++|+.+++..... .       ..+......|+|||+.++.. +.  +..|.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~-------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  260 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-S-------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIY  260 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-c-------CCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence            6778999999985 5544333   46888888776543221 1       22445667899999877643 32  35688


Q ss_pred             EEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      ++|+.+++.. .+..+........|+|||+.|+..+. .+  .|++.|+.+++.........    ....|+|+|+.+.+
T Consensus       261 ~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~  335 (419)
T PRK04043        261 LYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVY  335 (419)
T ss_pred             EEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEE
Confidence            8898777643 33333332345689999998777663 23  68888887776643332111    13489999998532


Q ss_pred             EEEEecC------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEe
Q 019482          215 FCTVQRG------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEIN  279 (340)
Q Consensus       215 ~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~  279 (340)
                      ..  ...      ....|.+.|+.++... .+... .......|+|||+.|+..+.++   .+.+.++......
T Consensus       336 ~~--~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~  405 (419)
T PRK04043        336 SS--RETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSF  405 (419)
T ss_pred             EE--cCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeE
Confidence            21  111      1147899999887653 33322 2334588999999888765432   3667777654433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=3.9e-10  Score=93.90  Aligned_cols=287  Identities=16%  Similarity=0.140  Sum_probs=178.1

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcc----cCCCceEEEEeCCCCCCcccCCeeeEEEec---CCCCeeEEEEcCCCCeEE
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRAS----SSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SEGDPMTIAVNPSGDDFV   79 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~   79 (340)
                      |.-+.|+|...  .|+.++.....-    .....+.||++.        +......+..   ....-.-..||.|++++|
T Consensus       252 Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~l~IWDI~--------tG~lkrsF~~~~~~~~~WP~frWS~DdKy~A  321 (698)
T KOG2314|consen  252 VQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQLIIWDIA--------TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFA  321 (698)
T ss_pred             ceeeecCCccc--eEEEecCCccccCcccCCCceEEEEEcc--------ccchhcceeccCCCccccceEEeccCCceeE
Confidence            55677777533  344433322211    123568888886        2222222222   111233478999999999


Q ss_pred             EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCCCCceeeccccCc
Q 019482           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~  154 (340)
                      .-..++ |.||+..+.........       ....|....|+|.++.||.=...     ..+.+..+.+++.+....-++
T Consensus       322 rm~~~s-isIyEtpsf~lld~Ksl-------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn  393 (698)
T KOG2314|consen  322 RMTGNS-ISIYETPSFMLLDKKSL-------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN  393 (698)
T ss_pred             Eeccce-EEEEecCceeeeccccc-------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee
Confidence            888776 99998766433211111       23578889999998888754321     346777777777665544443


Q ss_pred             cceeEEEecCCCCeEEEee----------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          155 KSVLDMDFSLDSEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      -.=..+.|..+|.+|+.--          .=..+.|+.++......... .....+...+|-|.|....+  +.......
T Consensus       394 VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~v--i~g~~~k~  470 (698)
T KOG2314|consen  394 VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAV--ISGNTVKN  470 (698)
T ss_pred             eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEE--EEcccccc
Confidence            3334577888888887532          11246677776544322222 23457899999999997432  33333456


Q ss_pred             eEEEEECCC-Cc---EEeeeeccCCCeeEEEECCCCCEEEEe---eCCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482          225 LLAVYDIST-WN---KIGHKRLLRKPASVLSISLDGKYLAMG---SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (340)
Q Consensus       225 ~i~i~d~~~-~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  297 (340)
                      ++.+|.+.+ ..   .+..+  .....+.+.|+|.|++++++   +..|.+.++|+.-......-...|  ...+.+.|.
T Consensus       471 tvsfY~~e~~~~~~~lVk~~--dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWD  546 (698)
T KOG2314|consen  471 TVSFYAVETNIKKPSLVKEL--DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWD  546 (698)
T ss_pred             ceeEEEeecCCCchhhhhhh--cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceEC
Confidence            788888873 22   22222  23456889999999999886   457889999987544333322334  367889999


Q ss_pred             cCCeEEEEEec------CCcEEEEEec
Q 019482          298 PTQRVVLTASK------EWGAMITKLT  318 (340)
Q Consensus       298 ~~~~~l~~~~~------dg~i~iw~~~  318 (340)
                      |.|+|+++++.      |..-+||++.
T Consensus       547 PtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  547 PTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             CCCCEEEEeeehhhhccccceEEEEee
Confidence            99999999986      4456777765

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.40  E-value=5.9e-11  Score=92.95  Aligned_cols=202  Identities=9%  Similarity=0.168  Sum_probs=134.5

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..|++++++.++   ...|+.|-..      +.+.-+.+..+-++..    .......|...|..+-|+-..+.+++.+.
T Consensus        68 P~~~~~~~y~~e---~~~L~vg~~n------gtvtefs~sedfnkm~----~~r~~~~h~~~v~~~if~~~~e~V~s~~~  134 (404)
T KOG1409|consen   68 PSPCSAMEYVSE---SRRLYVGQDN------GTVTEFALSEDFNKMT----FLKDYLAHQARVSAIVFSLTHEWVLSTGK  134 (404)
T ss_pred             CCCceEeeeecc---ceEEEEEEec------ceEEEEEhhhhhhhcc----hhhhhhhhhcceeeEEecCCceeEEEecc
Confidence            456778888873   3445555543      3466666654433321    22334569999999999988899999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC--CCceeeccccCccceeEEE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~i~~~~  161 (340)
                      |..+.---.+.+.......-.        ....++.+.-.  +...|...|.|.+..+.  .-..+.++.+|...+.+++
T Consensus       135 dk~~~~hc~e~~~~lg~Y~~~--------~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~  204 (404)
T KOG1409|consen  135 DKQFAWHCTESGNRLGGYNFE--------TPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLK  204 (404)
T ss_pred             ccceEEEeeccCCcccceEee--------ccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEE
Confidence            986554444444322221110        11122222211  55666667777666554  3456777888889999999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      |.|....|.+|..|..+.+||+--.+-+......+...+..+...+.-+.     +.+++.|+.|.+||.+.
T Consensus       205 Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~-----l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  205 WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ-----LISCGEDGGIVVWNMNV  271 (404)
T ss_pred             EcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee-----eeeccCCCeEEEEeccc
Confidence            99999999999999999999997655444333345566888877776666     78999999999999863

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.39  E-value=3.7e-12  Score=105.88  Aligned_cols=251  Identities=13%  Similarity=0.095  Sum_probs=169.1

Q ss_pred             eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      .....+.||+..|..++--.+.+.+++++.|++|++|.++..........-......|..+|.++.|-.+.++++++  |
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D  803 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D  803 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence            34456789999999998777888999999999999999975432211111111222488999999999998888765  7


Q ss_pred             CcEEEEeCCCCceeecccc--CccceeEEEecC--CCCeEEEe-eCCCeEEEEEccCCeeEEEeec----CCCCceeeEE
Q 019482          134 GHLRIMHWPSLRIILDEPK--AHKSVLDMDFSL--DSEFLATT-STDGSARIWKTEDGVAWTFLTR----NSDEKIELCR  204 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~  204 (340)
                      |.|.+||.--+..+.....  .++.+..+..-|  +...++.+ +...+|+++|.+..+-...++.    ..++.+.+++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            8999999876665543322  122334444444  34444444 7889999999998876655542    2345688999


Q ss_pred             EccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE-EeccCceEeeccc
Q 019482          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV-VDVKKMEINHWSK  283 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~  283 (340)
                      ..+.|+.     ++.+-..|.|.+.|.++|+.+...+........++ .|..+.++....|.++.+ |....+......+
T Consensus       884 Va~~GN~-----lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k  957 (1034)
T KOG4190|consen  884 VADKGNK-----LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK  957 (1034)
T ss_pred             eccCcch-----hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence            9999998     78888899999999999998877776665555554 366677887778888888 8776665544332


Q ss_pred             ccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ...  .+..-+  ..-|.-|+++.....+.||.
T Consensus       958 ppp--epahfl--qsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  958 PPP--EPAHFL--QSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             CCC--cchhhh--hccCceeEEeccCcEEEEEe
Confidence            111  111111  11244556665555556653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.36  E-value=1.1e-11  Score=106.19  Aligned_cols=250  Identities=12%  Similarity=0.088  Sum_probs=173.0

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEEec
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTT   83 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~   83 (340)
                      -.|-.+.|+|.+.....++       +.++..-.+|++....     ....++.+.+|...|+.+-|+|+. ..+++++.
T Consensus        68 w~vad~qws~h~a~~~wiV-------sts~qkaiiwnlA~ss-----~~aIef~lhghsraitd~n~~~q~pdVlatcsv  135 (1081)
T KOG0309|consen   68 WQVADVQWSPHPAKPYWIV-------STSNQKAIIWNLAKSS-----SNAIEFVLHGHSRAITDINFNPQHPDVLATCSV  135 (1081)
T ss_pred             chhcceecccCCCCceeEE-------ecCcchhhhhhhhcCC-----ccceEEEEecCccceeccccCCCCCcceeeccc
Confidence            3466789999887777777       5556667788886433     456678899999999999999965 47889999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~  162 (340)
                      |-.+..||+++.........      .-......++|+-....+.+.+....|++||++.+. +...+++|...|..++|
T Consensus       136 dt~vh~wd~rSp~~p~ys~~------~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f  209 (1081)
T KOG0309|consen  136 DTYVHAWDMRSPHRPFYSTS------SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF  209 (1081)
T ss_pred             cccceeeeccCCCcceeeee------cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence            99999999987653322211      122455678998744444455667789999998664 45566677778999999


Q ss_pred             cC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--------
Q 019482          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--------  233 (340)
Q Consensus       163 ~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--------  233 (340)
                      +. -...+.+++.|++|+.||..............+.++..-.+.|-|+-.++   .-.-.+..+.+++.++        
T Consensus       210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~---mp~~G~n~v~~~~c~n~d~e~n~~  286 (1081)
T KOG0309|consen  210 NRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI---MPMVGGNMVPQLRCENSDLEWNVF  286 (1081)
T ss_pred             hhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe---ccccCCeeeeeccccchhhhhccc
Confidence            76 34568899999999999987654333332234456777788887765322   2222223455544432        


Q ss_pred             --CcEEeeeeccCCCeeEEEECCCC----------CEEEEeeCCCcEEEEeccC
Q 019482          234 --WNKIGHKRLLRKPASVLSISLDG----------KYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       234 --~~~~~~~~~~~~~i~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~  275 (340)
                        .+++..+.+|...|....|-..+          -.|++=+.|..+++|-+..
T Consensus       287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence              35678888888777665553322          2588889999999997754

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.36  E-value=7.4e-10  Score=84.13  Aligned_cols=225  Identities=13%  Similarity=0.092  Sum_probs=143.3

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      ..+.+.+|....+...+       ..-..|...|.-+.=..+ ...+..++.|.++++.+++.+........       .
T Consensus        92 ~~g~fd~~~~~tn~~h~-------~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-------~  157 (344)
T KOG4532|consen   92 ASGQFDLFACNTNDGHL-------YQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-------Q  157 (344)
T ss_pred             ccceeeeecccCcccce-------eeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-------c
Confidence            55568888776333221       222334333322211111 23466678888888888876543222211       0


Q ss_pred             CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeec--cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  188 (340)
                      .-.+.++.+++|++++++.+....|..|.+.... .+..  .....+.-.+..|+.....+|++..||++.|||++....
T Consensus       158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence            1237889999999999999999999999987543 2222  122233557889999999999999999999999987543


Q ss_pred             E----EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC--------CCeeEEEECCCC
Q 019482          189 W----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--------KPASVLSISLDG  256 (340)
Q Consensus       189 ~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~i~~~~~s~~~  256 (340)
                      .    ..-..++.+.+..+.|++-|..-+   ++..-.-+.+.+.|++++...+.+...+        ..|....|+.++
T Consensus       238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDL---Lf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  238 PMAEISSTRPHHNGAFRVCRFSLYGLLDL---LFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             chhhhcccCCCCCCceEEEEecCCCcceE---EEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence            2    223456788999999999776533   4555667889999999987554443322        235666666666


Q ss_pred             CEEEEeeCCCcEEEEeccC
Q 019482          257 KYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       257 ~~l~~~~~dg~i~i~d~~~  275 (340)
                      ..+.+.+++. +.=|++.+
T Consensus       315 ~s~~v~~e~~-~ae~ni~s  332 (344)
T KOG4532|consen  315 ESNDVKNELQ-GAEYNILS  332 (344)
T ss_pred             cccccccchh-hheeeccc
Confidence            6666555432 44444433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.35  E-value=2e-11  Score=97.47  Aligned_cols=167  Identities=16%  Similarity=0.147  Sum_probs=121.6

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc---cCCCcEEEEeC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG---GVDGHLRIMHW  141 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~~~d~  141 (340)
                      .+..+..+|+++++|++..+....++++.......++...    .......+.+.|..+......+   +....+.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~----~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV----SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE----eecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            3555677889999999988888888888765432222111    0112233445555544444444   33445566665


Q ss_pred             CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      ..+. ...+.+|-..++.++|+||+++++++.+|..|++-.......+..+..+|.+-|..++.-++..      +++++
T Consensus       140 ~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~------LlS~s  212 (390)
T KOG3914|consen  140 DSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL------LLSGS  212 (390)
T ss_pred             cccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce------eeecC
Confidence            5533 3446688889999999999999999999999999888877778888877888999999988866      79999


Q ss_pred             CcceEEEEECCCCcEEeeeec
Q 019482          222 DKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      .|+++++||+++++.+..+..
T Consensus       213 GD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  213 GDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             CCCcEEEEecccCCcccccch
Confidence            999999999999998755543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.35  E-value=4.1e-09  Score=99.89  Aligned_cols=209  Identities=13%  Similarity=0.061  Sum_probs=136.7

Q ss_pred             CCeeEEEEcCCCCeEEEEec-CCCEEEEEecCceeeeeeccccCC----------CCCCCCCeEEEEEec-CCCeEEEcc
Q 019482           64 GDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMP----------PLQDAGPQKCLSFSV-DGSRFAAGG  131 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~-~~~~l~~~~  131 (340)
                      .....++++++++.|+++.. ++.|+++|+.++... .+......          ....-.....++++| ++..+++.+
T Consensus       624 ~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        624 NRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            35789999998887666554 467999998765432 22110000          000012346899999 566667777


Q ss_pred             CCCcEEEEeCCCCceeecc--------cc------CccceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeEEEee---
Q 019482          132 VDGHLRIMHWPSLRIILDE--------PK------AHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLT---  193 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~--------~~------~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~---  193 (340)
                      .++.|++||..++......        .+      .-.....++++|+++.| ++-+.++.|++||++++.......   
T Consensus       703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~  782 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP  782 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence            7889999998766432110        00      01235679999998854 455567899999998765321110   


Q ss_pred             ---------cCC--------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-------------c
Q 019482          194 ---------RNS--------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------L  243 (340)
Q Consensus       194 ---------~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------~  243 (340)
                               +..        -.....++++++|..     .++...++.|++||..++........             .
T Consensus       783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-----YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~  857 (1057)
T PLN02919        783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-----YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ  857 (1057)
T ss_pred             ccCcccccccCCCCchhhhhccCCceeeEeCCCcE-----EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence                     000        012468899999974     56778899999999987765422211             1


Q ss_pred             CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (340)
Q Consensus       244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  278 (340)
                      -.....++++++|+.+++-+.++.|++||+.+++.
T Consensus       858 l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        858 LSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             cCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            12467899999999888888899999999988764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=2.5e-10  Score=98.66  Aligned_cols=279  Identities=13%  Similarity=0.082  Sum_probs=183.4

Q ss_pred             EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC------------
Q 019482            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG------------   75 (340)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------   75 (340)
                      .++.|+|.    .++|+|++..       +.+.+.-        +......++.|...|+.+.|.|..            
T Consensus        19 ~A~Dw~~~----GLiAygshsl-------V~VVDs~--------s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~   79 (1062)
T KOG1912|consen   19 NAADWSPS----GLIAYGSHSL-------VSVVDSR--------SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ   79 (1062)
T ss_pred             cccccCcc----ceEEEecCce-------EEEEehh--------hhhhhhccccCccceeEEEeccCCCchhccCccccc
Confidence            46788873    4788777522       3333322        233345567799999999998731            


Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec---CC-CeEEEccCCCcEEEEeCCCCceeeccc
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV---DG-SRFAAGGVDGHLRIMHWPSLRIILDEP  151 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~  151 (340)
                      -.||++...|.|.+||.........+.       ++..++..++|-+   +. ..|++-.....+.+|+..+|+...+..
T Consensus        80 lliAsaD~~GrIil~d~~~~s~~~~l~-------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen   80 LLIASADISGRIILVDFVLASVINWLS-------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             eeEEeccccCcEEEEEehhhhhhhhhc-------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence            257788888999999998776554443       2567888899877   33 466666777899999999999999888


Q ss_pred             cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccC-------CeeEEEeecCCCC-------------------------
Q 019482          152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSDE-------------------------  198 (340)
Q Consensus       152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~-------------------------  198 (340)
                      ..+....|+.+.| |.+.+..-+..|.+.+-+.-.       ++..+ +...+..                         
T Consensus       153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts~~~sa~fit  231 (1062)
T KOG1912|consen  153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTSTPASAYFIT  231 (1062)
T ss_pred             cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccCCCcchhHHH
Confidence            8888888999999 777777766778877776532       22211 1111100                         


Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCC--CEEEEeeCCCcEEEEeccCc
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~  276 (340)
                      ....++|+|.-+..     +.......+.++|++-..++.......+.+.-+.+-|++  ..|++...||.+.+|-.+..
T Consensus       232 y~a~faf~p~~rn~-----lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~  306 (1062)
T KOG1912|consen  232 YCAQFAFSPHWRNI-----LFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE  306 (1062)
T ss_pred             HHHhhhcChhhhce-----EEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence            01135677776652     333346779999999888888887777777778887765  57899999999999976541


Q ss_pred             e----------------EeecccccccccceeeEEEecC-CeEEEEEecCCcEEEEEecC
Q 019482          277 E----------------INHWSKRLHLGTSIALVEFCPT-QRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       277 ~----------------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iw~~~~  319 (340)
                      .                ....+.... ...+....-.|. ...++.--.+|...+|.+..
T Consensus       307 ~~~f~~~~~~l~~dl~~Q~~~vr~m~-~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~  365 (1062)
T KOG1912|consen  307 PTEFKKPNASLSMDLGEQVHVVRPME-EFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN  365 (1062)
T ss_pred             CccccccchhhccccccceEEEeech-hcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence            1                111111111 122233333454 34444455567788888873

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.33  E-value=1.8e-10  Score=89.30  Aligned_cols=253  Identities=15%  Similarity=0.152  Sum_probs=160.4

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC------------CCeeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE------------GDPMTIA   70 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~   70 (340)
                      ....|+++.|..   .+.++++|..+|.      +.+|.-......   +.....++++|+            ..|+.+.
T Consensus        25 ead~ItaVefd~---tg~YlatGDkgGR------Vvlfer~~s~~c---eykf~teFQshe~EFDYLkSleieEKin~I~   92 (460)
T COG5170          25 EADKITAVEFDE---TGLYLATGDKGGR------VVLFEREKSYGC---EYKFFTEFQSHELEFDYLKSLEIEEKINAIE   92 (460)
T ss_pred             ccceeeEEEecc---ccceEeecCCCce------EEEeeccccccc---chhhhhhhcccccchhhhhhccHHHHhhhee
Confidence            456789999987   5578888886554      777754422211   111112344444            3488899


Q ss_pred             EcCCCC--eEEEEecCCCEEEEEecCceee----------------------eee--------------ccccCCCCCCC
Q 019482           71 VNPSGD--DFVCSTTNGGCKLFEVYGGATD----------------------INL--------------LAKKMPPLQDA  112 (340)
Q Consensus        71 ~~~~~~--~l~~~~~d~~i~iw~~~~~~~~----------------------~~~--------------~~~~~~~~~~~  112 (340)
                      |..++.  .++..+.|.+|++|.+......                      ..+              .......-.|.
T Consensus        93 w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~  172 (460)
T COG5170          93 WFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP  172 (460)
T ss_pred             eecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence            876543  5677788999999998654210                      000              00001112355


Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc---eeeccccCc-----cceeEEEecC-CCCeEEEeeCCCeEEEEEc
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAH-----KSVLDMDFSL-DSEFLATTSTDGSARIWKT  183 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~-----~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~  183 (340)
                      -.+.++.|+.|.+.++++ .|-.|.+|+++-..   .+..+.++.     .-|++..|+| ..+.+...+..|.|++-|+
T Consensus       173 yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~Dl  251 (460)
T COG5170         173 YHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDL  251 (460)
T ss_pred             eEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhh
Confidence            567889999888888776 47789999986432   222333333     3588999999 4556777777899999999


Q ss_pred             cCCeeE------EEee---------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeeeeccC---
Q 019482          184 EDGVAW------TFLT---------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHKRLLR---  244 (340)
Q Consensus       184 ~~~~~~------~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~---  244 (340)
                      ++....      ....         ..--..|..+.|+++|++      +.+..-.++++||.+..+ ++.+...|.   
T Consensus       252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry------IlsRdyltvkiwDvnm~k~pikTi~~h~~l~  325 (460)
T COG5170         252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY------ILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM  325 (460)
T ss_pred             hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcE------EEEeccceEEEEecccccCCceeechHHHHH
Confidence            853211      1110         011235788999999995      444556789999998654 555554332   


Q ss_pred             ---------CCe---eEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          245 ---------KPA---SVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       245 ---------~~i---~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                               ..|   ..+.||-|.+.+++|+..+..-+|-..
T Consensus       326 ~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         326 DELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                     122   357888899999999988888887643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.33  E-value=2.4e-10  Score=86.34  Aligned_cols=212  Identities=12%  Similarity=0.124  Sum_probs=124.9

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (340)
                      +|+.+.+.-+    ..++.|...+...+-|..+....++........+..  .+..|.++-.+-+.+--++.++++..||
T Consensus        38 ~~~~~~~v~~----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~--~~a~~sep~p~~~~s~~~t~V~~~~~dg  111 (319)
T KOG4714|consen   38 KLSKVSLSAE----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFK--VLAKNSEIDPNDACTMTDNRVCIGYADG  111 (319)
T ss_pred             EEEEeechhh----heeecccchhheeeeccceEEEechhhcccCcCcee--eeeccCCCCCcccccccCCceEecCCCc
Confidence            3555555542    224444444433444455555444433333223333  2335555444444444577899999999


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcEEEEeCCCCceeeccccCccceeEE
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      .+.+++.+..........     ..|.+. .+.++...++.+.++..     -+..+.|+++..+....-......|.++
T Consensus       112 ~~~v~s~~~~~~~~~~i~-----~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l  185 (319)
T KOG4714|consen  112 SLAVFSTDKDLALMSRIP-----SIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTAL  185 (319)
T ss_pred             eEEEEechHHHhhhhhcc-----cccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhh
Confidence            999999876221111110     011111 12223334444444321     2345566655433322222223358999


Q ss_pred             EecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      +-+| ..+.+++|+.||.+-+||.++......+...++.+++.+-|+|.....    +++++.||.+..||..+
T Consensus       186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~----Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  186 CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH----LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh----eeEecCCCcEEEEcCCC
Confidence            9999 556778888999999999998866666666777889999999975443    78999999999999875

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=5.4e-11  Score=92.12  Aligned_cols=248  Identities=13%  Similarity=0.120  Sum_probs=161.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccc----c-----CCCCCCCCCeEEEEEecCCC--eEEEc
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAK----K-----MPPLQDAGPQKCLSFSVDGS--RFAAG  130 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~----~-----~~~~~~~~~v~~~~~~~~~~--~l~~~  130 (340)
                      .+.|+++.|...|.|+++|...|.|.+|.-.... +..++..+    +     .....-...|..+.|..++.  .++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4569999999999999999999999999865443 11212111    0     01112235678888876543  45566


Q ss_pred             cCCCcEEEEeCCCCc-------------------eee--------c---------------c-ccCccceeEEEecCCCC
Q 019482          131 GVDGHLRIMHWPSLR-------------------IIL--------D---------------E-PKAHKSVLDMDFSLDSE  167 (340)
Q Consensus       131 ~~dg~i~~~d~~~~~-------------------~~~--------~---------------~-~~~~~~i~~~~~~~~~~  167 (340)
                      +.|.+|++|.+....                   .+.        +               . ..|.-.|.++.|+.|.+
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            789999999874320                   000        0               0 12233578899998888


Q ss_pred             eEEEeeCCCeEEEEEccCCee---EEEeecCC----CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----
Q 019482          168 FLATTSTDGSARIWKTEDGVA---WTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----  236 (340)
Q Consensus       168 ~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----  236 (340)
                      .++++. |-.|.+|+++-...   +..++++.    ...|++..|+|.....    +..++..|.|++-|++....    
T Consensus       186 t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~----fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         186 TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV----FMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce----EEEecCCCcEEehhhhhhhhccCc
Confidence            888764 78899999864322   22232222    2358899999987664    45667789999999984321    


Q ss_pred             --Ee----------eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce-Eeeccccccc-----------ccc--
Q 019482          237 --IG----------HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME-INHWSKRLHL-----------GTS--  290 (340)
Q Consensus       237 --~~----------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~-----------~~~--  290 (340)
                        +.          -+......|..+.|+++|+++++-+. -+++|||.+..+ ++..+ ..|.           ...  
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi-~~h~~l~~~l~d~YEnDaif  338 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI-PMHCDLMDELNDVYENDAIF  338 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee-chHHHHHHHHHhhhhcccee
Confidence              10          11112256888999999999998754 579999998754 33322 1221           122  


Q ss_pred             -eeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          291 -IALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       291 -i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                       -..+.|+-|...+++|+..+..-++-.
T Consensus       339 dkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         339 DKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             eeEEEEecCCcccccccccccceeeecc
Confidence             245788888889999998877777763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=3.2e-11  Score=100.43  Aligned_cols=267  Identities=11%  Similarity=0.098  Sum_probs=174.1

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCC
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  110 (340)
                      ++.|.++++|.+.+.+.... +..+..+++.|+.+|.++.|-.+-++++++  ||.|.+||.--++...+.....     
T Consensus       753 ASkDKTVKLWSik~EgD~~~-tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dap-----  824 (1034)
T KOG4190|consen  753 ASKDKTVKLWSIKPEGDEIG-TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAP-----  824 (1034)
T ss_pred             ccCCceEEEEEeccccCccc-cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCc-----
Confidence            56788899999988776654 556788899999999999999888888754  6779999987776554333211     


Q ss_pred             CCCCeEEEEEec--CCCeEEE-ccCCCcEEEEeCCCCceeecc-----ccCccceeEEEecCCCCeEEEeeCCCeEEEEE
Q 019482          111 DAGPQKCLSFSV--DGSRFAA-GGVDGHLRIMHWPSLRIILDE-----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (340)
Q Consensus       111 ~~~~v~~~~~~~--~~~~l~~-~~~dg~i~~~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd  182 (340)
                      ..+.+..+..-+  +...+.. ++...+|+++|.+..+.....     .+....+.+++..+.|+.++.+-..|.+.+.|
T Consensus       825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LD  904 (1034)
T KOG4190|consen  825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILD  904 (1034)
T ss_pred             ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEe
Confidence            223333333334  3444444 477889999999877654333     23334688999999999999999999999999


Q ss_pred             ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEE-EECCCCcEEeeeeccCCCeeEEEECCCCCEEEE
Q 019482          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAV-YDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (340)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i-~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  261 (340)
                      .++|+.+..+.... .....++- |..+.     ++....|.++.+ |..-.+....+.+....+..-+  ..-|.-+++
T Consensus       905 aR~G~vINswrpme-cdllqlaa-psdq~-----L~~saldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~  975 (1034)
T KOG4190|consen  905 ARNGKVINSWRPME-CDLLQLAA-PSDQA-----LAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVT  975 (1034)
T ss_pred             cCCCceeccCCccc-chhhhhcC-chhHH-----HHhhcccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEE
Confidence            99999887775322 12222221 33332     455666777777 8766665443333333332221  123556777


Q ss_pred             eeCCCcEEEEeccC----ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482          262 GSKDGDICVVDVKK----MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (340)
Q Consensus       262 ~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  314 (340)
                      +...+.+.+|--..    ...+..+......+..++++--|-+.-++.|...|.|.+
T Consensus       976 a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  976 AQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             eccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            76666777774211    111111212222356788888888888888888888865

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.31  E-value=1.9e-08  Score=80.51  Aligned_cols=216  Identities=13%  Similarity=0.092  Sum_probs=140.9

Q ss_pred             EEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEe-cCCCeEEEccCCCcEEEEeCCCCc
Q 019482           68 TIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLR  145 (340)
Q Consensus        68 ~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~  145 (340)
                      ++.|.+ ++.++++--..+.|..|+..++......         . .....+++. +++. |+.+... .+.++|..+++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~---------~-~~~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID---------L-PGPNGMAFDRPDGR-LYVADSG-GIAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE---------S-SSEEEEEEECTTSE-EEEEETT-CEEEEETTTTE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe---------c-CCCceEEEEccCCE-EEEEEcC-ceEEEecCCCc
Confidence            678988 6666666667788999998887653311         1 226778888 6654 4444444 45666988875


Q ss_pred             eeecccc-----CccceeEEEecCCCCeEEEeeCC--------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482          146 IILDEPK-----AHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       146 ~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (340)
                      .......     .....+.+++.|+|++.++....        |.|..++.. ++.......  -...+.++|+|+++.+
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchhe
Confidence            4332222     23468899999999977776543        557777776 554433332  2457899999999863


Q ss_pred             eEEEEEecCCcceEEEEECCCCcE-E---eee-eccC--CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          213 FLFCTVQRGDKALLAVYDISTWNK-I---GHK-RLLR--KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~~-~---~~~-~~~~--~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                          .++.+..+.|..|++..... +   ..+ ....  +....+++..+|++.++....+.|.++|.+ ++.+..+...
T Consensus       149 ----yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p  223 (246)
T PF08450_consen  149 ----YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP  223 (246)
T ss_dssp             ----EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred             ----eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence                35677788899999863321 1   112 1222  236789999999988887788999999987 7777666543


Q ss_pred             ccccceeeEEEe-cCCeEEEE
Q 019482          286 HLGTSIALVEFC-PTQRVVLT  305 (340)
Q Consensus       286 ~~~~~i~~~~~~-~~~~~l~~  305 (340)
                      .  ..+++++|. ++.+.|+.
T Consensus       224 ~--~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  224 V--PRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             S--SSEEEEEEESTTSSEEEE
T ss_pred             C--CCEEEEEEECCCCCEEEE
Confidence            2  478999994 56554443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.30  E-value=4.5e-09  Score=80.98  Aligned_cols=240  Identities=13%  Similarity=0.105  Sum_probs=133.1

Q ss_pred             CccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee
Q 019482           18 NVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT   97 (340)
Q Consensus        18 ~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~   97 (340)
                      +++++|       .-.++.|+|-.-..+-....  ..+ ...+...-.-+.++||||+..||.+...|+|+++|+.....
T Consensus         8 ~Gk~lA-------i~qd~~iEiRsa~Ddf~si~--~kc-qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l   77 (282)
T PF15492_consen    8 DGKLLA-------ILQDQCIEIRSAKDDFSSII--GKC-QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL   77 (282)
T ss_pred             CCcEEE-------EEeccEEEEEeccCCchhee--EEE-ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee
Confidence            456666       55677777776543322111  111 11222223467899999999999999999999999987543


Q ss_pred             eeeeccccCCCCCCCCCeEEEEEecCC------CeEEEccCCCcEEEEeCCCC--c---eeec--ccc-CccceeEEEec
Q 019482           98 DINLLAKKMPPLQDAGPQKCLSFSVDG------SRFAAGGVDGHLRIMHWPSL--R---IILD--EPK-AHKSVLDMDFS  163 (340)
Q Consensus        98 ~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~~~d~~~~--~---~~~~--~~~-~~~~i~~~~~~  163 (340)
                      . .+.........-...|..+.|.+..      ..|++...+|.++-|-+..+  +   ....  +.. ....|.++.++
T Consensus        78 f-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   78 F-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             E-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            2 2222211122234567777776532      24566667888888776322  1   1111  222 23489999999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc------eEEEEECCCCcEE
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA------LLAVYDISTWNKI  237 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~------~i~i~d~~~~~~~  237 (340)
                      |..++|+.|+....      +.+..     ......+++-..-.+..+..   .+....|.      +..+|.+-+.+..
T Consensus       157 p~h~LLlVgG~~~~------~~~~s-----~a~~~GLtaWRiL~~~Pyyk---~v~~~~~~~~~~~~~~~~~~~~~~~~f  222 (282)
T PF15492_consen  157 PKHRLLLVGGCEQN------QDGMS-----KASSCGLTAWRILSDSPYYK---QVTSSEDDITASSKRRGLLRIPSFKFF  222 (282)
T ss_pred             CCCCEEEEeccCCC------CCccc-----cccccCceEEEEcCCCCcEE---EccccCccccccccccceeeccceeee
Confidence            99888887764321      00000     00011122222221211100   01111111      1123333322222


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      .........|..|..||||..||+...+|.|.+|++.+.+.....
T Consensus       223 s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  223 SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            122234567999999999999999999999999999987766544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.30  E-value=1.9e-08  Score=82.81  Aligned_cols=230  Identities=13%  Similarity=0.088  Sum_probs=135.3

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecC-------CCCeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeeeecc
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDES-------EGDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLA  103 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~  103 (340)
                      .+..|.+|+..        +.....++.--       -.....++++|||++|+....  +..|.+.|+.+.+...++..
T Consensus        75 ~~d~V~v~D~~--------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658        75 RTDYVEVIDPQ--------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             CCCEEEEEECc--------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence            45678888876        22222222211       223458999999999987763  57899999999887766533


Q ss_pred             ccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-Cceeec---c-ccCcccee-EEEecC-CCCeEEEeeCCC
Q 019482          104 KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILD---E-PKAHKSVL-DMDFSL-DSEFLATTSTDG  176 (340)
Q Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~---~-~~~~~~i~-~~~~~~-~~~~l~~~~~d~  176 (340)
                      .        +...-...+++..++.  +.||......+.+ ++....   + .....++. .-.|.+ +|+++..... |
T Consensus       147 p--------~~~~vy~t~e~~~~~~--~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G  215 (352)
T TIGR02658       147 P--------DCYHIFPTANDTFFMH--CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-G  215 (352)
T ss_pred             C--------CCcEEEEecCCccEEE--eecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-C
Confidence            1        1112222222222211  2344433333222 111100   0 00000000 004455 7877776665 9


Q ss_pred             eEEEEEccC-----CeeEEEeecC------CCCceeeEEEccCCCcceEEEEEec-----CCcceEEEEECCCCcEEeee
Q 019482          177 SARIWKTED-----GVAWTFLTRN------SDEKIELCRFSKDGTKPFLFCTVQR-----GDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       177 ~v~iwd~~~-----~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~-----~~d~~i~i~d~~~~~~~~~~  240 (340)
                      +|.+.|+..     .+.+..+...      ..+...-++++|+++.+|+...--+     ...+.|.++|..+++.+..+
T Consensus       216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i  295 (352)
T TIGR02658       216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI  295 (352)
T ss_pred             eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence            999999643     2333322211      1123445999999998553211000     12368999999999988777


Q ss_pred             eccCCCeeEEEECCCCC-EEEEee-CCCcEEEEeccCceEeecc
Q 019482          241 RLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~  282 (340)
                      .. ...+..++++||++ +|++.+ .++.|.++|..+++.+..+
T Consensus       296 ~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       296 EL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            65 45788999999999 888776 5788999999999988876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.30  E-value=1.2e-09  Score=83.10  Aligned_cols=239  Identities=11%  Similarity=0.046  Sum_probs=152.7

Q ss_pred             EEEEcC-----CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeC
Q 019482           68 TIAVNP-----SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        68 ~~~~~~-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~  141 (340)
                      .+.|.|     ...+||.|+..|...+|...+.+....+-..      +...|.-+.=..+ .-.+..++.|.++++.++
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~  145 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDV------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVV  145 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecc------cccchhhhhhhcccccceeeccCCcceeEEEE
Confidence            455655     3358999999999999999876644333221      1111111111111 224566778888888887


Q ss_pred             CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-eeEEE-eecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      +-+..........-.+.++++++|++++++.+....|-.|.+... +.+.. ........-.+..|+.....     +++
T Consensus       146 ~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~-----FAv  220 (344)
T KOG4532|consen  146 SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQ-----FAV  220 (344)
T ss_pred             ecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcce-----EEE
Confidence            644322222111123789999999999999999999999998653 22222 22222333467788887776     788


Q ss_pred             cCCcceEEEEECCCCcEE-----eeeeccCCCeeEEEECCCC--CEEEEeeCCCcEEEEeccCceEeeccc------ccc
Q 019482          220 RGDKALLAVYDISTWNKI-----GHKRLLRKPASVLSISLDG--KYLAMGSKDGDICVVDVKKMEINHWSK------RLH  286 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~-----~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~  286 (340)
                      +..|+.+.|||++.....     .....|.+.+..+.|+|.|  .+|+..-.-+.+.+.|++++...+.+.      ..|
T Consensus       221 ~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~  300 (344)
T KOG4532|consen  221 VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH  300 (344)
T ss_pred             EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence            999999999999975422     2334577899999999865  355555556789999999876443331      122


Q ss_pred             cccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ....|....|+.++..+.+.+++ .+.=|++.
T Consensus       301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~  331 (344)
T KOG4532|consen  301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNIL  331 (344)
T ss_pred             cccccccccccCCCcccccccch-hhheeecc
Confidence            23457888888888777766665 23334443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.30  E-value=9.7e-09  Score=81.51  Aligned_cols=228  Identities=16%  Similarity=0.112  Sum_probs=150.1

Q ss_pred             CeeEEEEcC-CCCeEEEEecCC-CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcEE
Q 019482           65 DPMTIAVNP-SGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLR  137 (340)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~  137 (340)
                      ....++.+| ....++.+-+-| ...+||..+++....+.......     ---.-.||+||++|++.-.     .|.|-
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH-----FyGHg~fs~dG~~LytTEnd~~~g~G~Ig   80 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH-----FYGHGVFSPDGRLLYTTENDYETGRGVIG   80 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE-----EecCEEEcCCCCEEEEeccccCCCcEEEE
Confidence            345788899 555667777766 56789999888766554322111     1123689999999998643     47899


Q ss_pred             EEeCC-CCceeeccccCccceeEEEecCCCCeEEEee------------------CCCeEEEEEccCCeeEEEee---cC
Q 019482          138 IMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTS------------------TDGSARIWKTEDGVAWTFLT---RN  195 (340)
Q Consensus       138 ~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~v~iwd~~~~~~~~~~~---~~  195 (340)
                      |||.. +.+.+..+..+.-....+.+.|||+.|+.+.                  .+-++...|.++|+.+.+..   ..
T Consensus        81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            99998 5566666665554667888999998877763                  12346667778888877643   23


Q ss_pred             CCCceeeEEEccCCCcceEEEEEecCCc-------ceEEEEECCCCcEEeee-------eccCCCeeEEEECCCCCEEEE
Q 019482          196 SDEKIELCRFSKDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGHK-------RLLRKPASVLSISLDGKYLAM  261 (340)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~  261 (340)
                      +...+..+++.++|...     +..-..       -.+-+++..  +.+..+       ....+.+-++++++++.++++
T Consensus       161 ~~lSiRHLa~~~~G~V~-----~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~  233 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVA-----FAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV  233 (305)
T ss_pred             cccceeeEEecCCCcEE-----EEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEE
Confidence            44579999999998741     111111       112333322  222222       223467899999999988866


Q ss_pred             ee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          262 GS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       262 ~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      .+ ..+.+.+||..+++.+.....    ..+..++-.+++ ++++.+..
T Consensus       234 tsPrGg~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  234 TSPRGGRVAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             ECCCCCEEEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCCCc
Confidence            55 567899999999998876532    356777777776 55555443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.29  E-value=3.2e-11  Score=103.56  Aligned_cols=261  Identities=12%  Similarity=0.093  Sum_probs=171.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC--CeEEEccCCCcEEEEe
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAAGGVDGHLRIMH  140 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~d  140 (340)
                      .+.+.++..+|.|+-+|.+++-| +.+.|+...-.....+...     ..-.|-.+.|+|..  .+-++......-.+|+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~-----tpw~vad~qws~h~a~~~wiVsts~qkaiiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHI-----TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN   97 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeecc-----CcchhcceecccCCCCceeEEecCcchhhhhh
Confidence            45688999999999999999988 8888887643322222111     12345677888843  2334444445567888


Q ss_pred             CCCC---ceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEE
Q 019482          141 WPSL---RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       141 ~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      +...   ..-..+.+|...|+.+.|+|.. ..+++++.|..+..||+++... +..+..-+ .....++|+.....    
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~-s~asqVkwnyk~p~----  172 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR-SAASQVKWNYKDPN----  172 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc-ccCceeeecccCcc----
Confidence            7532   2233344666789999999954 5799999999999999997654 33333223 34678899876665    


Q ss_pred             EEEecCCcceEEEEECCCCc-EEeeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482          216 CTVQRGDKALLAVYDISTWN-KIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                       +.+.+..+-|++||++.+. ++..++++...++.+.|.. ....+.+.+.|++|+.||............ ....+|+.
T Consensus       173 -vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~  250 (1081)
T KOG0309|consen  173 -VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWR  250 (1081)
T ss_pred             -hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCccee
Confidence             6777888889999999775 6667777777888888865 345678889999999999875432221111 11467888


Q ss_pred             EEEecCC--eEEEEEecCCcEEEEEecCCC-------CCCCCcccccccccc
Q 019482          294 VEFCPTQ--RVVLTASKEWGAMITKLTVPA-------DWKGLSLPLLHSHSQ  336 (340)
Q Consensus       294 ~~~~~~~--~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~h~~~v  336 (340)
                      -.+.|-|  .++.---.+..+.+++.+...       ...++..+.+|.+.|
T Consensus       251 ~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V  302 (1081)
T KOG0309|consen  251 GRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV  302 (1081)
T ss_pred             ccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence            8888854  333333233345555444322       123455666776654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=2.8e-09  Score=92.40  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=78.9

Q ss_pred             EEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe---------eCCCcEEEEeccCceEeec--cccc
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG---------SKDGDICVVDVKKMEINHW--SKRL  285 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~--~~~~  285 (340)
                      ++.|...|+|.++|+.++..-..+..|...|.++.|--+.+++-.+         +.-+.+.+-|+++|.-...  +...
T Consensus       440 vAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~  519 (1062)
T KOG1912|consen  440 VAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKP  519 (1062)
T ss_pred             EEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCC
Confidence            5778888999999999888877888888889999997766555433         2235678889999764432  2223


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      . ..+|+.+..+..++||+..-.|.-+.+|+++
T Consensus       520 d-espI~~irvS~~~~yLai~Fr~~plEiwd~k  551 (1062)
T KOG1912|consen  520 D-ESPIRAIRVSSSGRYLAILFRREPLEIWDLK  551 (1062)
T ss_pred             C-cCcceeeeecccCceEEEEecccchHHHhhc
Confidence            3 5799999999999999999999999999995

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.26  E-value=2.3e-08  Score=77.18  Aligned_cols=231  Identities=12%  Similarity=0.071  Sum_probs=128.0

Q ss_pred             EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  148 (340)
                      ++.+.+|+.||... |..|.|-..++.-..  ...+...+......-+-++||||+.+||.+...|+|+++|+...+ +.
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~s--i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf   78 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSS--IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LF   78 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchh--eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eE
Confidence            56678888777655 444666655443111  001001111123445789999999999999999999999987533 32


Q ss_pred             ccccCc-------cceeEEEecCC------CCeEEEeeCCCeEEEEEccCC-----eeEEE--eecCCCCceeeEEEccC
Q 019482          149 DEPKAH-------KSVLDMDFSLD------SEFLATTSTDGSARIWKTEDG-----VAWTF--LTRNSDEKIELCRFSKD  208 (340)
Q Consensus       149 ~~~~~~-------~~i~~~~~~~~------~~~l~~~~~d~~v~iwd~~~~-----~~~~~--~~~~~~~~v~~~~~~~~  208 (340)
                      .+....       ..|..+.|-+.      ...|++-..+|.++=|-+..+     +....  +..+....|.++.++|.
T Consensus        79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            332222       35677777542      224666777888887776322     22222  33344567999999999


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEE---CCCCCEEEEeeCCC------cEEEEeccCceEe
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI---SLDGKYLAMGSKDG------DICVVDVKKMEIN  279 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg------~i~i~d~~~~~~~  279 (340)
                      .+.+    ++.+.....-...           ......+++-..   +|..+.+ +..+|+      +..+|.+-+.+..
T Consensus       159 h~LL----lVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~f  222 (282)
T PF15492_consen  159 HRLL----LVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFF  222 (282)
T ss_pred             CCEE----EEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEc-cccCccccccccccceeeccceeee
Confidence            8752    2333332210000           011111211111   2222211 111121      1223333332222


Q ss_pred             ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ..  .......|..+..||||+.||+...+|.+.+|+++.-.
T Consensus       223 s~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  223 SR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            11  12225689999999999999999999999999997543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.22  E-value=3.6e-08  Score=84.28  Aligned_cols=222  Identities=9%  Similarity=-0.010  Sum_probs=138.1

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      ++..++.++.++.+..+|..+++...+....        +.+.+.-.. .+..++.+..+|.+..||.++++.+.+....
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  174 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRV  174 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccC
Confidence            4677888888999999999888876654321        112111111 2446777778999999999999887665433


Q ss_pred             ccce-----eEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCC---c------e-eeEEEccCCCcceEEEEE
Q 019482          154 HKSV-----LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE---K------I-ELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       154 ~~~i-----~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~~~~~~~  218 (340)
                      ....     .....  .+..++.+..++.+..+|.++|+.+.........   .      + ....+  .+..     ++
T Consensus       175 ~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~-----vy  245 (377)
T TIGR03300       175 TPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQ-----VY  245 (377)
T ss_pred             CCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCE-----EE
Confidence            2211     11111  1346777888899999999999876543311100   0      0 11111  1223     45


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      ..+.++.+..||..+++.+-.....  ....+.  .++..+++++.+|.+..+|..+++.+....... .....+...  
T Consensus       246 ~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--  318 (377)
T TIGR03300       246 AVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--  318 (377)
T ss_pred             EEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--
Confidence            5667899999999999876544321  112222  256788888899999999999998765432111 112222222  


Q ss_pred             CCeEEEEEecCCcEEEEEecCC
Q 019482          299 TQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      .+..|++++.+|.+++++....
T Consensus       319 ~g~~l~~~~~~G~l~~~d~~tG  340 (377)
T TIGR03300       319 VGGYLVVGDFEGYLHWLSREDG  340 (377)
T ss_pred             ECCEEEEEeCCCEEEEEECCCC
Confidence            3567888899999999886543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.22  E-value=2.6e-08  Score=85.15  Aligned_cols=221  Identities=13%  Similarity=0.109  Sum_probs=135.4

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  154 (340)
                      +..++.+..++.+..||.++++...+....... ...... ...... + ..++.+..++.+..+|.++++.+.......
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-~~~~~~-~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~  220 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPA-LTLRGS-ASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVAL  220 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCc-eeecCC-CCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence            456777788899999999988876655321100 000000 011111 2 367778888999999999988765432110


Q ss_pred             ----cc---eeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          155 ----KS---VLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       155 ----~~---i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                          ..   ...+.-+|  .+..++.++.++.++.+|.++++.+......   .......  .+..     ++.++.++.
T Consensus       221 ~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~~~p~~--~~~~-----vyv~~~~G~  290 (377)
T TIGR03300       221 PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SYQGPAV--DDNR-----LYVTDADGV  290 (377)
T ss_pred             CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC---CccCceE--eCCE-----EEEECCCCe
Confidence                00   11111112  3557777888999999999999876655421   1122222  3333     566678999


Q ss_pred             EEEEECCCCcEEeeeeccCC-CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce-eeEEEecCCeEE
Q 019482          226 LAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI-ALVEFCPTQRVV  303 (340)
Q Consensus       226 i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l  303 (340)
                      +..+|..+++.+-....... ...+...  .+..+++++.+|.|+++|..+++.+..... + ...+ .+..+ .++ .|
T Consensus       291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~-~-~~~~~~sp~~-~~~-~l  364 (377)
T TIGR03300       291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT-D-GSGIASPPVV-VGD-GL  364 (377)
T ss_pred             EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-C-CCccccCCEE-ECC-EE
Confidence            99999999987654422221 2222222  467899999999999999999998876542 2 1122 22233 344 48


Q ss_pred             EEEecCCcEEEE
Q 019482          304 LTASKEWGAMIT  315 (340)
Q Consensus       304 ~~~~~dg~i~iw  315 (340)
                      +.++.||.++.+
T Consensus       365 ~v~~~dG~l~~~  376 (377)
T TIGR03300       365 LVQTRDGDLYAF  376 (377)
T ss_pred             EEEeCCceEEEe
Confidence            888899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.16  E-value=1.6e-09  Score=86.77  Aligned_cols=160  Identities=9%  Similarity=0.033  Sum_probs=118.0

Q ss_pred             ceeEEEecCCCCeEEEeeCCCeEEEEEccCCee----EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  231 (340)
                      ....+..+|.++++|.+..+....+++.+....    +....  .....+.+.|..+.....+  ....++...+.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v--~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLV--ADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEE--EeecCCceeeeeecc
Confidence            344566788889999988888877887765432    22222  1123455555555554221  345566677778877


Q ss_pred             CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482          232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       232 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                      ..+.. ...-+|-.-+..++|+||+++|+++..|..|++-.+.....+..+..+| ..-|..++.-++ +.|+++|.|++
T Consensus       140 ~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~-~~LlS~sGD~t  216 (390)
T KOG3914|consen  140 DSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDN-YLLLSGSGDKT  216 (390)
T ss_pred             cccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcccc-HhheeeeeeccC-ceeeecCCCCc
Confidence            76443 3556778889999999999999999999999999998888888888888 578999998764 56999999999


Q ss_pred             EEEEEecCCCC
Q 019482          312 AMITKLTVPAD  322 (340)
Q Consensus       312 i~iw~~~~~~~  322 (340)
                      +++|++...+.
T Consensus       217 lr~Wd~~sgk~  227 (390)
T KOG3914|consen  217 LRLWDITSGKL  227 (390)
T ss_pred             EEEEecccCCc
Confidence            99999986654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.15  E-value=1.7e-07  Score=74.63  Aligned_cols=236  Identities=14%  Similarity=0.108  Sum_probs=144.5

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-   83 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-   83 (340)
                      .+...++.+|...  ..++++.+-+.     ...+++.................|.||      -.|++||++|++.-. 
T Consensus         5 ~RgH~~a~~p~~~--~avafaRRPG~-----~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd   71 (305)
T PF07433_consen    5 ARGHGVAAHPTRP--EAVAFARRPGT-----FALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTEND   71 (305)
T ss_pred             ccccceeeCCCCC--eEEEEEeCCCc-----EEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccc
Confidence            3445566666433  56666665443     233343332111111122233456677      789999999998754 


Q ss_pred             ----CCCEEEEEec-CceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc------------------CCCcEEEEe
Q 019482           84 ----NGGCKLFEVY-GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------------VDGHLRIMH  140 (340)
Q Consensus        84 ----d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~~~d  140 (340)
                          .|.|-|||.. +-+.+.++..       +.-....+.+.|||+.|+++.                  .+..+...|
T Consensus        72 ~~~g~G~IgVyd~~~~~~ri~E~~s-------~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld  144 (305)
T PF07433_consen   72 YETGRGVIGVYDAARGYRRIGEFPS-------HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD  144 (305)
T ss_pred             cCCCcEEEEEEECcCCcEEEeEecC-------CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEe
Confidence                4799999998 4444444332       333446688999998777763                  233566677


Q ss_pred             CCCCceeec--cc--cCccceeEEEecCCCCeEEEeeCCC-------eEEEEEccCCeeEEEeec------CCCCceeeE
Q 019482          141 WPSLRIILD--EP--KAHKSVLDMDFSLDSEFLATTSTDG-------SARIWKTEDGVAWTFLTR------NSDEKIELC  203 (340)
Q Consensus       141 ~~~~~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~d~-------~v~iwd~~~~~~~~~~~~------~~~~~v~~~  203 (340)
                      ..+++.+.+  +.  .|+..|..+++.++|..++..-..|       -|.+++  .++.+..+..      ...+.+-++
T Consensus       145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSI  222 (305)
T PF07433_consen  145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSI  222 (305)
T ss_pred             cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEE
Confidence            778876655  32  2445899999999987666554333       233343  3333332221      224578999


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  270 (340)
                      ++++++..+    .+++-..+.+.+||..+++.+......  .+..++-.+++ ++++.+ .|.+..
T Consensus       223 a~~~~g~~i----a~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG-~G~~~~  281 (305)
T PF07433_consen  223 AADRDGRLI----AVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG-QGQLIR  281 (305)
T ss_pred             EEeCCCCEE----EEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC-CccEEE
Confidence            999999863    577778899999999999987655443  45667776666 555544 454433

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.13  E-value=3.8e-11  Score=105.18  Aligned_cols=220  Identities=15%  Similarity=0.149  Sum_probs=158.0

Q ss_pred             eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-
Q 019482           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-  134 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  134 (340)
                      -..+..|...-+|++|+-+.+.|+.|+..|.|+++++.++........       |..+|+.+.=+.||..+++.+.-. 
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-------H~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-------HQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-------cccccccccccCCcceeeeeccccC
Confidence            345778888999999999999999999999999999999876555443       888999999888998777655432 


Q ss_pred             -cEEEEeCCC-CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC---CCceeeEEEccCC
Q 019482          135 -HLRIMHWPS-LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---DEKIELCRFSKDG  209 (340)
Q Consensus       135 -~i~~~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~  209 (340)
                       ...+|++.. +.....+    ..-.++.|+.....-+.|..-....+||++++.++.++....   ...-++..|+|+.
T Consensus      1167 PlsaLW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred             chHHHhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence             478899864 2222222    245678898755544455545678999999998877643211   1223678899998


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  289 (340)
                      +.     ++.   ||  .+||++..+.++.+......+. =.|+|.|..++.-++     |||+++.+.++.....    
T Consensus      1243 ~L-----Iln---dG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L---- 1302 (1516)
T KOG1832|consen 1243 TL-----ILN---DG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL---- 1302 (1516)
T ss_pred             ce-----Eee---Cc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHhcCccc----
Confidence            85     332   33  4899999887777766553333 359999999988765     8999999888766432    


Q ss_pred             ceeeEEEecCCeEEEEE
Q 019482          290 SIALVEFCPTQRVVLTA  306 (340)
Q Consensus       290 ~i~~~~~~~~~~~l~~~  306 (340)
                      .-..+.|+..|..+...
T Consensus      1303 dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1303 DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             cceEEEeccCccchhhh
Confidence            23567788888765443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.10  E-value=1.1e-07  Score=75.82  Aligned_cols=219  Identities=15%  Similarity=0.076  Sum_probs=135.4

Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      +|.|..||..+++.........     ......+. ..+++..+++++.++.|..||..+|+.+..... ...+.... .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~   73 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGP-----GIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-V   73 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSS-----SCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-E
T ss_pred             CCEEEEEECCCCCEEEEEECCC-----CCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-e
Confidence            5778899988888776663311     01222221 233566777778899999999999998876654 22222222 2


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEe-ecCCC--CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFL-TRNSD--EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~-~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      .++..++.++.++.++.+|.++|+.+... .....  ...........+..     ++.+..++.|..+|.++|+.+-..
T Consensus        74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen   74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR-----LYVGTSSGKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE-----EEEEETCSEEEEEETTTTEEEEEE
T ss_pred             ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE-----EEEEeccCcEEEEecCCCcEEEEe
Confidence            23556666667889999999999998874 32211  11122222223554     556666999999999999987776


Q ss_pred             eccCCC----------eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          241 RLLRKP----------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       241 ~~~~~~----------i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      ......          +..-....++ .++.++.++.+.-+|+.+++.+. ... . . .+..+ ...++..|+.++.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~-~-~-~~~~~-~~~~~~~l~~~~~~~  222 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKP-I-S-GIYSL-PSVDGGTLYVTSSDG  222 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EEC-S-S--ECEC-EECCCTEEEEEETTT
T ss_pred             ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-Eec-C-C-CccCC-ceeeCCEEEEEeCCC
Confidence            654322          1122222344 77777777764444999999663 222 1 1 23321 346677777777999


Q ss_pred             cEEEEEecCCC
Q 019482          311 GAMITKLTVPA  321 (340)
Q Consensus       311 ~i~iw~~~~~~  321 (340)
                      .+..||+...+
T Consensus       223 ~l~~~d~~tG~  233 (238)
T PF13360_consen  223 RLYALDLKTGK  233 (238)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCC
Confidence            99999986543

...

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.09  E-value=1.4e-07  Score=86.09  Aligned_cols=204  Identities=12%  Similarity=0.077  Sum_probs=135.1

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      ..+.|.++.|..++..++.+...|.|.+-|..+.....  .+      .-...|.+++|+||.+.++..+.++++.+-.-
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg------~vd~GI~aaswS~Dee~l~liT~~~tll~mT~  138 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VG------NVDNGISAASWSPDEELLALITGRQTLLFMTK  138 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccceee--ee------eccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence            34689999999999999999999999999887654322  11      13478999999999999998888777766532


Q ss_pred             C----C-------------------Cceeecccc---------------------CccceeEEEecCCCCeEEEee----
Q 019482          142 P----S-------------------LRIILDEPK---------------------AHKSVLDMDFSLDSEFLATTS----  173 (340)
Q Consensus       142 ~----~-------------------~~~~~~~~~---------------------~~~~i~~~~~~~~~~~l~~~~----  173 (340)
                      .    .                   |+.-..+.+                     .++.=+.+.|--||+++++..    
T Consensus       139 ~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  139 DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             cccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence            0    0                   000001110                     011123589999999998843    


Q ss_pred             CC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC---cEEeeeeccCCCeeE
Q 019482          174 TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASV  249 (340)
Q Consensus       174 ~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~  249 (340)
                      .+ ..+++||.+ +..- .......+.-.+++|-|.|..  +..+-..+.|+.|.+|.-+.-   .....+.....++..
T Consensus       219 ~~~RkirV~drE-g~Ln-s~se~~~~l~~~LsWkPsgs~--iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~  294 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GALN-STSEPVEGLQHSLSWKPSGSL--IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE  294 (1265)
T ss_pred             CCceeEEEeccc-chhh-cccCcccccccceeecCCCCe--EeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence            23 799999976 4332 222223344578999998885  222444556778999886532   222223333345899


Q ss_pred             EEECCCCCEEEE---eeCCCcEEEEeccCce
Q 019482          250 LSISLDGKYLAM---GSKDGDICVVDVKKME  277 (340)
Q Consensus       250 ~~~s~~~~~l~~---~~~dg~i~i~d~~~~~  277 (340)
                      ++|+.++..|++   ......|++|-+.+..
T Consensus       295 L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  295 LAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             eeecCCCCceeeeecccccceEEEEEecCeE
Confidence            999999999998   4455569999887643

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.07  E-value=2.7e-06  Score=68.13  Aligned_cols=186  Identities=13%  Similarity=0.105  Sum_probs=118.3

Q ss_pred             eeEEEEc-CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--------CcE
Q 019482           66 PMTIAVN-PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--------GHL  136 (340)
Q Consensus        66 v~~~~~~-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i  136 (340)
                      ...+++. +++ .|+.+...+ +.++|+.+++.........  ........+.+++.|+|++.++....        |.|
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~--~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPD--GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEET--TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccC--CCcccCCCceEEEcCCCCEEEEecCCCccccccccce
Confidence            7788888 564 555556655 6777988875433332210  00133567899999999977765432        457


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEccCCee----EEEeecCCC--CceeeEEEccCC
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVA----WTFLTRNSD--EKIELCRFSKDG  209 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~----~~~~~~~~~--~~v~~~~~~~~~  209 (340)
                      ..++.. ++.. .....-...+.++|+|+++.|+ +-+..+.|..+++.....    ...+.....  +..-.+++..+|
T Consensus       118 ~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  118 YRIDPD-GKVT-VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EEEETT-SEEE-EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             EEECCC-CeEE-EEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            777766 4432 2333334578999999998765 556778899999863221    122211111  247789999999


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEE-CCCCCEEEEee
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLAMGS  263 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~  263 (340)
                      ..     .++....+.|.++|.+ ++.+..+......+++++| -|+.+.|++.+
T Consensus       196 ~l-----~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  196 NL-----WVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -E-----EEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred             CE-----EEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence            84     3444467889999998 8888877777668999999 46766666544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.05  E-value=6.7e-07  Score=71.25  Aligned_cols=187  Identities=19%  Similarity=0.190  Sum_probs=121.0

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc-cc
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE-PK  152 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~  152 (340)
                      ++..+++++.++.+..||..+++..........    ....    . ..++..++++..++.++.+|..+++..... ..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~  105 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----ISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT  105 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----GGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----ccce----e-eecccccccccceeeeEecccCCcceeeeeccc
Confidence            566788778899999999999987766643211    0011    1 224456666667889999999999988773 32


Q ss_pred             Ccc---ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc---------e-eeEEEccCCCcceEEEEEe
Q 019482          153 AHK---SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---------I-ELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       153 ~~~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~~~~~~~~  219 (340)
                      ...   .........++..++.+..++.|..+|+++|+.+..........         + ..+.+ .++ .     ++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-----v~~  178 (238)
T PF13360_consen  106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-R-----VYV  178 (238)
T ss_dssp             SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-E-----EEE
T ss_pred             cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-E-----EEE
Confidence            211   12223333347788888889999999999999987776422110         1 12222 234 3     455


Q ss_pred             cCCcce-EEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482          220 RGDKAL-LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (340)
Q Consensus       220 ~~~d~~-i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  280 (340)
                      ...++. +.+ |+.+++.+-...  ......+ ..+++..|++++.++.|..||+++++..-
T Consensus       179 ~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  179 SSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             ECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             EcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            565664 555 999998663222  2233331 34677888888899999999999998753

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.03  E-value=9.4e-10  Score=86.47  Aligned_cols=142  Identities=12%  Similarity=0.149  Sum_probs=107.1

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEe
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d  140 (340)
                      ..+.|.++.|...++.+..|.++|.|..+|++....-.   ......+-|...|+++..-. ++++|++.+.+|+|++||
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~---~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD  327 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN---GWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYD  327 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC---CcceEEEEcCcchhhhhhhccccceEeeccCcCceeEee
Confidence            46789999999989999999999999999998652211   11122234888999998877 788999999999999999


Q ss_pred             CCCCce---eeccccCccc--eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC---CceeeEEEc
Q 019482          141 WPSLRI---ILDEPKAHKS--VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD---EKIELCRFS  206 (340)
Q Consensus       141 ~~~~~~---~~~~~~~~~~--i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---~~v~~~~~~  206 (340)
                      ++--++   +..+.+|-..  -.-+...+....++++++|...+||.++.++.+.++.....   ..+.+++|.
T Consensus       328 ~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  328 LRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             ehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            987666   7777777642  23345566677888899999999999999999888764332   234455554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.4e-08  Score=82.80  Aligned_cols=247  Identities=11%  Similarity=0.021  Sum_probs=166.3

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEe
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMH  140 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d  140 (340)
                      |.+.|+.+..+ -.+++.+++.||.++.|--..-....-...    ...|.+.+.+++.+-++.++.+++. |..++++|
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKh----FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD   82 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKH----FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD   82 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhh----hHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence            66667766554 457999999999999997654221111111    1136678889999999999999777 99999999


Q ss_pred             CCCCceeecc--ccCccceeEEEecCCC-C-eEEEe-eCCCeEEEEEccCCe-eEEEeecCCCCceeeEEEccCCCcceE
Q 019482          141 WPSLRIILDE--PKAHKSVLDMDFSLDS-E-FLATT-STDGSARIWKTEDGV-AWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       141 ~~~~~~~~~~--~~~~~~i~~~~~~~~~-~-~l~~~-~~d~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      +++-..+.-+  ....+.+. ...+|.. . .++.+ -.++.+.++|-.... +...+...|..+|..+.+.+.+..   
T Consensus        83 vEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds---  158 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS---  158 (558)
T ss_pred             eeccchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc---
Confidence            9876544222  11222222 2223321 1 23333 357899999976544 444555567789999999999986   


Q ss_pred             EEEEecCCcceEEEEECCC------CcE---------EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482          215 FCTVQRGDKALLAVYDIST------WNK---------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~------~~~---------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  279 (340)
                        ..+....|.|..|....      .+.         +..+........++.|+|+|..+.+-+.|..|++++.++++..
T Consensus       159 --~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  159 --AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             --eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence              67777789999998873      111         1112223456789999999999999999999999999998766


Q ss_pred             eccccc-------------------------------ccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          280 HWSKRL-------------------------------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       280 ~~~~~~-------------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      +.+...                               |....-+.+.|...|++|+.++-=| |+|.++...
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn  307 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN  307 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence            544210                               1122446678888899998887653 677777643

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.00  E-value=3.7e-09  Score=80.04  Aligned_cols=146  Identities=13%  Similarity=0.181  Sum_probs=95.8

Q ss_pred             CCCeEEEeeCCCeEEEEEccCCeeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCC------cceEEEEECCCCcEE
Q 019482          165 DSEFLATTSTDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD------KALLAVYDISTWNKI  237 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~  237 (340)
                      .++.++++..||.+.+++.+.-..+ ..+...+.+ -.+.+....++      ++..+.      -+..+.|+++..+.+
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~------~i~s~~~g~~n~~d~~~a~~~~p~~t~  172 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGN------SILSGGCGNWNAQDNFYANTLDPIKTL  172 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeeccc------EEecCCcceEeeccceeeecccccccc
Confidence            4567999999999999998752111 111111111 11122222333      122222      334566776654433


Q ss_pred             eeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEecCCcEEEE
Q 019482          238 GHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMIT  315 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw  315 (340)
                      .........+++++-+|. .+.+++|+.||.+.+||.+....+..+...| ..+++.+-|+| ++..|+++++||.+--|
T Consensus       173 ~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  173 IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCCCcEEEE
Confidence            222222345888999995 5678888999999999999988777777788 68999999999 45789999999998777


Q ss_pred             Eec
Q 019482          316 KLT  318 (340)
Q Consensus       316 ~~~  318 (340)
                      +-.
T Consensus       252 das  254 (319)
T KOG4714|consen  252 DAS  254 (319)
T ss_pred             cCC
Confidence            765

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=2.7e-09  Score=84.00  Aligned_cols=151  Identities=9%  Similarity=0.089  Sum_probs=109.2

Q ss_pred             EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC----ceeeccccCc
Q 019482           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILDEPKAH  154 (340)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~~~~~~  154 (340)
                      ++.+.+-.+-+-|++++-.         +.+...+.|.++.|...+++++.|.+.|.|..+|++.+    .......-|.
T Consensus       228 fs~G~sqqv~L~nvetg~~---------qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~  298 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ---------QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD  298 (425)
T ss_pred             ecccccceeEEEEeecccc---------cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence            3444455588888877643         22234578899999988899999999999999999865    2222233567


Q ss_pred             cceeEEEecC-CCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCc-eeeEEEccCCCcceEEEEEecCCcceEEEE
Q 019482          155 KSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVY  229 (340)
Q Consensus       155 ~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  229 (340)
                      ..|+++..-. ++++|++.+.+|+|++||++--++   +.+..+|.+.. ..-+-..+....     ++++++|...++|
T Consensus       299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~-----I~s~GdDcytRiW  373 (425)
T KOG2695|consen  299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGS-----IFSVGDDCYTRIW  373 (425)
T ss_pred             cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccce-----EEEccCeeEEEEE
Confidence            7888888776 788999999999999999997766   77776544321 112223344333     6789999999999


Q ss_pred             ECCCCcEEeeeecc
Q 019482          230 DISTWNKIGHKRLL  243 (340)
Q Consensus       230 d~~~~~~~~~~~~~  243 (340)
                      .++.+..+.+.+..
T Consensus       374 sl~~ghLl~tipf~  387 (425)
T KOG2695|consen  374 SLDSGHLLCTIPFP  387 (425)
T ss_pred             ecccCceeeccCCC
Confidence            99999988766544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.94  E-value=7.5e-07  Score=81.58  Aligned_cols=204  Identities=12%  Similarity=0.082  Sum_probs=132.9

Q ss_pred             CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEc----cC-
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT----ED-  185 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~----~~-  185 (340)
                      ....|.++.|..+.+.++.+..+|.|.+-|.++..... .-.-...|.+++|+||.+.++..+.++++.+-+-    -. 
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            44689999999999999999999999999887655332 2223458999999999999888887777765431    00 


Q ss_pred             ------------------CeeEEEeecC--------------------CCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          186 ------------------GVAWTFLTRN--------------------SDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       186 ------------------~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                                        |+....+.+.                    ....-.++.|--||+++.............|+
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence                              0100111100                    01112458999999874333222233338999


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee---CCCcEEEEeccCce---EeecccccccccceeeEEEecCCe
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKME---INHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      +||.. +..-..-....+.-.+++|-|.|..+++..   .|+.|.+|.-+..+   ...... .. ..++..++|+.++.
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~d-e~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LD-EKEVEELAWNSNSD  302 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-cc-ccchheeeecCCCC
Confidence            99987 433222222233446799999999999863   45679999865422   211111 11 23499999999999


Q ss_pred             EEEE---EecCCcEEEEEec
Q 019482          302 VVLT---ASKEWGAMITKLT  318 (340)
Q Consensus       302 ~l~~---~~~dg~i~iw~~~  318 (340)
                      .||.   ......|++|.+.
T Consensus       303 iLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             ceeeeecccccceEEEEEec
Confidence            9887   5455569999875

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.94  E-value=2.7e-08  Score=87.99  Aligned_cols=181  Identities=13%  Similarity=0.105  Sum_probs=133.0

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  154 (340)
                      +..++-|+-...+..+|+.+.+.......       ..+.|.-+.  .+++++.+|...|+|.+-|.++.+.+..+..|.
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs  217 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS  217 (1118)
T ss_pred             Ccceeecchhhheeeeecccceeeeeeec-------cCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence            45666676666788888877665443321       112344444  367899999999999999999999999999999


Q ss_pred             cceeEEEecCCCCeEEEeeC---------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          155 KSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      +.|.++...  |+.|++++.         |..|+|||++..+.+..+..+.  ...-+.|.|.-...    ++..+..|+
T Consensus       218 ~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~--~P~flrf~Psl~t~----~~V~S~sGq  289 (1118)
T KOG1275|consen  218 GSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY--GPQFLRFHPSLTTR----LAVTSQSGQ  289 (1118)
T ss_pred             cceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCccccc--Cchhhhhcccccce----EEEEecccc
Confidence            999876665  899999874         5668999999887766665333  24667888864432    566777888


Q ss_pred             EEEEECC---CC-cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482          226 LAVYDIS---TW-NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       226 i~i~d~~---~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                      ..+-|..   +. ..+..+......+..+.+|++++.++.|..+|.|.+|-
T Consensus       290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            8888843   32 12233444455699999999999999999999999997

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.1e-07  Score=76.71  Aligned_cols=244  Identities=11%  Similarity=0.036  Sum_probs=141.0

Q ss_pred             EEecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCc
Q 019482           58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGH  135 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  135 (340)
                      .+.+|...|..++|+|..+ ++..++.+.+|+|.|+++......+..       + ..+++++|.-| .++|+.|...|.
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-------~-~~~wSC~wDlde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-------Y-NQIWSCCWDLDERHVIYAGLQNGM  259 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-------c-CCceeeeeccCCcceeEEeccCce
Confidence            4667888899999999877 778899999999999999877665543       2 68899999885 458888999999


Q ss_pred             EEEEeCCCCceeeccccC---ccceeEEEec------CCCCeEEEeeCCCeEEEEEccC--CeeEEEeecCCCCceeeEE
Q 019482          136 LRIMHWPSLRIILDEPKA---HKSVLDMDFS------LDSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCR  204 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~---~~~i~~~~~~------~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~  204 (340)
                      |.+||++..+........   ..+|..++.-      +.+.+++..+.+  +..|+..-  +.....+.....+...+++
T Consensus       260 VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismq  337 (463)
T KOG1645|consen  260 VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQ  337 (463)
T ss_pred             EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeee
Confidence            999999865533222211   1244444332      223444444332  45555432  2222223323334455555


Q ss_pred             EccCCCcceEEEEEecCCc------ce-EEEEECCCCcEEeeee-cc-CCC------eeEEEECCCCCEEEE-eeCCCcE
Q 019482          205 FSKDGTKPFLFCTVQRGDK------AL-LAVYDISTWNKIGHKR-LL-RKP------ASVLSISLDGKYLAM-GSKDGDI  268 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d------~~-i~i~d~~~~~~~~~~~-~~-~~~------i~~~~~s~~~~~l~~-~~~dg~i  268 (340)
                      ..+..+.+    +++.-.+      .. +---|.+.|.++...+ .+ +..      -..+.-.++.++++. +...+.+
T Consensus       338 y~~~snh~----l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~l  413 (463)
T KOG1645|consen  338 YHGVSNHL----LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNEL  413 (463)
T ss_pred             ecCccceE----EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCccee
Confidence            55544442    1111110      00 1112223333322211 11 100      011222345555554 4556789


Q ss_pred             EEEeccCceEeecccccccccceeeEEEec-CC-eEEEEEecCCcEEEEEecC
Q 019482          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQ-RVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~~l~~~~~dg~i~iw~~~~  319 (340)
                      .+||..+.+..+.+..   ..+|..+.... ++ .+|++-. |..++|+..+.
T Consensus       414 il~D~~s~evvQ~l~~---~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es  462 (463)
T KOG1645|consen  414 ILQDPHSFEVVQTLAL---SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES  462 (463)
T ss_pred             EEeccchhheeeeccc---CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence            9999999999887754   35788877544 33 4565554 55788887653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=1.6e-07  Score=82.10  Aligned_cols=172  Identities=12%  Similarity=0.174  Sum_probs=119.3

Q ss_pred             cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee
Q 019482           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI   99 (340)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~   99 (340)
                      .++++|...+.      +.++..+...          .+...|...      .-+|.++++|+.||+|.|-.+.+.+...
T Consensus        50 ~~~~~GtH~g~------v~~~~~~~~~----------~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   50 KFFALGTHRGA------VYLTTCQGNP----------KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             ceeeeccccce------EEEEecCCcc----------ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence            56788876554      8888776332          111123322      5689999999999999999988776544


Q ss_pred             eeccccCCCCCCCCCeEEEEEecC-----CCeEEEccCCCcEEEEeCC--CCceeeccccCccceeEEEecCCCCeEEEe
Q 019482          100 NLLAKKMPPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWP--SLRIILDEPKAHKSVLDMDFSLDSEFLATT  172 (340)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  172 (340)
                      ...        -..++.+++++|+     .+.+++|+..| +.++.-.  ..+.........++|.++.|.  |+++|-+
T Consensus       108 ~~d--------f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa  176 (846)
T KOG2066|consen  108 QYD--------FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA  176 (846)
T ss_pred             eEe--------cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe
Confidence            332        3468999999997     56899999888 7777532  111111344455789999998  8899999


Q ss_pred             eCCCeEEEEEccCCeeEEEeecCCC-----CceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482          173 STDGSARIWKTEDGVAWTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (340)
Q Consensus       173 ~~d~~v~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  232 (340)
                      +.+| |++||+..++.+..+...+.     .....+.|.++.+       +.-|...+|++..++
T Consensus       177 nd~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-------LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  177 NDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-------LVIGWGDSVKICSIK  233 (846)
T ss_pred             cCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-------EEEecCCeEEEEEEe
Confidence            8766 99999999888877764442     1234677877766       333555668887777

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.90  E-value=2.9e-07  Score=80.62  Aligned_cols=183  Identities=16%  Similarity=0.122  Sum_probs=132.0

Q ss_pred             CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE
Q 019482          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  191 (340)
                      ...+.|++++  ++.|+.|+.+|.|++++... .. .....|...      ..+|.++++|+.||+|.|-.+-+.+...+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3566677775  56899999999999998653 32 233333322      66899999999999999999988888777


Q ss_pred             eecCCCCceeeEEEccC-----CCcceEEEEEecCCcceEEEEECCC---CcEEeeeeccCCCeeEEEECCCCCEEEEee
Q 019482          192 LTRNSDEKIELCRFSKD-----GTKPFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       192 ~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  263 (340)
                      +.  ...++.+++++|+     .++     +++++..| +.++.-+-   ...+ ......++|.++.|  .|+++|-++
T Consensus       109 ~d--f~rpiksial~Pd~~~~~sk~-----fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 YD--FKRPIKSIALHPDFSRQQSKQ-----FVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             Ee--cCCcceeEEeccchhhhhhhh-----eeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe--cCcEEEEec
Confidence            65  3457999999998     233     67888888 77776442   1222 34556789999999  577999998


Q ss_pred             CCCcEEEEeccCceEeeccccccc----ccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          264 KDGDICVVDVKKMEINHWSKRLHL----GTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       264 ~dg~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .+| |++||+.+.+.+..+...+.    ..-...+.|.++.++++-  ..-+|+|..++
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG--W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG--WGDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe--cCCeEEEEEEe
Confidence            887 99999999888776654441    112456788877664443  33468888887

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.90  E-value=7.8e-09  Score=56.44  Aligned_cols=37  Identities=16%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEE
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE   91 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~   91 (340)
                      +..++++|.+.|++++|+|++.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4577899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.87  E-value=3.3e-09  Score=93.46  Aligned_cols=255  Identities=13%  Similarity=0.109  Sum_probs=165.8

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..--+|++|+-   +.+.++.|..      .+.|++|+..        +....-...+|.++|+-+.-+.+|..+++.+.
T Consensus      1101 ~~~fTc~afs~---~~~hL~vG~~------~Geik~~nv~--------sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss 1163 (1516)
T KOG1832|consen 1101 TALFTCIAFSG---GTNHLAVGSH------AGEIKIFNVS--------SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS 1163 (1516)
T ss_pred             ccceeeEEeec---CCceEEeeec------cceEEEEEcc--------CccccccccccccccccccccCCcceeeeecc
Confidence            44568999998   3456777775      4559999998        55555567889999999999999997776544


Q ss_pred             CC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc----cce
Q 019482           84 NG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH----KSV  157 (340)
Q Consensus        84 d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~i  157 (340)
                      -.  ...+|++.+.-....          ....-.++.|+.....-+.|.......+||++++..+.++....    ..-
T Consensus      1164 ~S~PlsaLW~~~s~~~~~H----------sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRH----------SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSN 1233 (1516)
T ss_pred             ccCchHHHhccccccCccc----------cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhc
Confidence            32  567999865221111          12345788998865555666666778999999998777644332    134


Q ss_pred             eEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE
Q 019482          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  237 (340)
                      ++..|+|+..+++-   ||  .+||++..+.++.+..-.  .-..-.|+|.|..     ++..+     -|||+++.+.+
T Consensus      1234 n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~e-----VIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1234 NLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNE-----VIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             cccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCce-----EEeec-----hhhhhHHHHHH
Confidence            77899998887763   44  479999887777765322  1234468999987     34333     38999998877


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeC--C---------------CcEEEEeccCceEeecccccccccceeeEEEecCC
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSK--D---------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~--d---------------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      +......  -+.+.|+..|..++..-.  |               ...+-||....+.+..+..   ...+..++-+|..
T Consensus      1297 h~VP~Ld--qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v---~R~~~Dlct~~~D 1371 (1516)
T KOG1832|consen 1297 HSVPSLD--QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV---DRCLLDLCTEPTD 1371 (1516)
T ss_pred             hcCcccc--ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec---ccchhhhhcCCcc
Confidence            6655443  256788888877665420  0               1123333333333333321   2456666667766


Q ss_pred             eEEEEEe
Q 019482          301 RVVLTAS  307 (340)
Q Consensus       301 ~~l~~~~  307 (340)
                      .++..--
T Consensus      1372 ~~l~vIe 1378 (1516)
T KOG1832|consen 1372 SFLGVIE 1378 (1516)
T ss_pred             ceEEEEe
Confidence            6665543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.86  E-value=1.9e-05  Score=67.57  Aligned_cols=113  Identities=19%  Similarity=0.265  Sum_probs=80.5

Q ss_pred             ceeEEEecC-CCCeEEEe----eCCCe----EEEEEccCCe--eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          156 SVLDMDFSL-DSEFLATT----STDGS----ARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       156 ~i~~~~~~~-~~~~l~~~----~~d~~----v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      ...++.|+- +.+.+.+.    +.+|.    -.+|+....+  .+..........+.+++++|+.+.     ++.|..||
T Consensus       207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k-----LvlGC~Dg  281 (545)
T PF11768_consen  207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK-----LVLGCEDG  281 (545)
T ss_pred             CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce-----EEEEecCC
Confidence            345677776 44445443    23443    3456665443  233333345567999999999998     88999999


Q ss_pred             eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      .|.+||...+...  .....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus       282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            9999999876433  333345578899999999999999999999999854

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.86  E-value=6.4e-06  Score=70.83  Aligned_cols=221  Identities=12%  Similarity=0.092  Sum_probs=133.4

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCC-CCC-CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQ-DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  152 (340)
                      +..++.+..++.+..+|..+++........... ... ...++    .  .+..++.++.+|.+..+|..+++.......
T Consensus       160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~  233 (394)
T PRK11138        160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRI  233 (394)
T ss_pred             CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheecc
Confidence            446677778888999999999877666432100 000 01111    1  123566677889999999998886654321


Q ss_pred             Ccc-------ceeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          153 AHK-------SVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       153 ~~~-------~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      ...       ....+.-+|  .+..++.++.++.+..+|..+++.+-......   ...+..  .+..     ++..+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~~--~~~~-----vy~~~~~  303 (394)
T PRK11138        234 SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFAV--DGGR-----IYLVDQN  303 (394)
T ss_pred             ccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcEE--ECCE-----EEEEcCC
Confidence            110       111122233  34567777789999999999998765543211   112222  2333     5666788


Q ss_pred             ceEEEEECCCCcEEeeeeccC-CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee-eEEEecCCe
Q 019482          224 ALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA-LVEFCPTQR  301 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~  301 (340)
                      +.+..+|..+++.+-...... ....+...  .+.++++++.+|.|..+|..+++.+.......  ..+. +..+  .+.
T Consensus       304 g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~--~~~~s~P~~--~~~  377 (394)
T PRK11138        304 DRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS--SGFLSEPVV--ADD  377 (394)
T ss_pred             CeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--CcceeCCEE--ECC
Confidence            999999999988654332211 11222222  35678889999999999999998876543221  1222 2222  234


Q ss_pred             EEEEEecCCcEEEEEe
Q 019482          302 VVLTASKEWGAMITKL  317 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~~  317 (340)
                      .|+.++.||.++.++.
T Consensus       378 ~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        378 KLLIQARDGTVYAITR  393 (394)
T ss_pred             EEEEEeCCceEEEEeC
Confidence            6888899998887664

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.85  E-value=1.1e-08  Score=55.79  Aligned_cols=39  Identities=33%  Similarity=0.360  Sum_probs=36.4

Q ss_pred             CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       234 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                      ++++..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.85  E-value=4.9e-06  Score=70.27  Aligned_cols=237  Identities=14%  Similarity=0.113  Sum_probs=134.5

Q ss_pred             cCCCCeEEEE---------ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           72 NPSGDDFVCS---------TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        72 ~~~~~~l~~~---------~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      |||+++++..         +..+.+.++|+.+++.......        ...+....|+|+|+.++... ++.|.+.+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--------~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--------PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--------ETTBSEEEE-SSSTEEEEEE-TTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--------ccccccceeecCCCeeEEEe-cCceEEEECC
Confidence            5777776663         2235688999988764332211        35678899999999998875 6789999987


Q ss_pred             CCceeeccccC-----------------ccceeEEEecCCCCeEEEeeCC-Ce---------------------------
Q 019482          143 SLRIILDEPKA-----------------HKSVLDMDFSLDSEFLATTSTD-GS---------------------------  177 (340)
Q Consensus       143 ~~~~~~~~~~~-----------------~~~i~~~~~~~~~~~l~~~~~d-~~---------------------------  177 (340)
                      +++..+.....                 -+.-..+-|+||+++|+....| ..                           
T Consensus        72 ~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~  151 (353)
T PF00930_consen   72 TGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKA  151 (353)
T ss_dssp             TSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BT
T ss_pred             CCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCC
Confidence            76544322211                 1123567899999998875432 11                           


Q ss_pred             --------EEEEEccCCeeEE-Eee---cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-cC
Q 019482          178 --------ARIWKTEDGVAWT-FLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LR  244 (340)
Q Consensus       178 --------v~iwd~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~  244 (340)
                              +.++|+.+++... ...   ......+..+.|.+++..+++..+--......+.++|..++........ ..
T Consensus       152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence                    3344554444321 111   1233457789999998854443333334455677888877654322222 22


Q ss_pred             CCe---eEEEEC-CCCC-EEEEeeCCCc--EEEEeccCceEeeccccccccccee-eEEEecCCeEE-EEEecC--CcEE
Q 019482          245 KPA---SVLSIS-LDGK-YLAMGSKDGD--ICVVDVKKMEINHWSKRLHLGTSIA-LVEFCPTQRVV-LTASKE--WGAM  313 (340)
Q Consensus       245 ~~i---~~~~~s-~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l-~~~~~d--g~i~  313 (340)
                      ..+   ....+. +++. ++.....+|.  |.+++..++.... +..+  .-.|. -+.|+++++.| +++..+  +.-.
T Consensus       232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~-lT~G--~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~  308 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ-LTSG--DWEVTSILGWDEDNNRIYFTANGDNPGERH  308 (353)
T ss_dssp             SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE-SS-S--SS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred             cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec-cccC--ceeecccceEcCCCCEEEEEecCCCCCceE
Confidence            222   345554 6554 4555556665  5555666666443 3222  23564 46788876544 455543  4678


Q ss_pred             EEEecCC
Q 019482          314 ITKLTVP  320 (340)
Q Consensus       314 iw~~~~~  320 (340)
                      ||.+...
T Consensus       309 lY~v~~~  315 (353)
T PF00930_consen  309 LYRVSLD  315 (353)
T ss_dssp             EEEEETT
T ss_pred             EEEEEeC
Confidence            8888766

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.85  E-value=3.1e-05  Score=63.94  Aligned_cols=273  Identities=14%  Similarity=0.117  Sum_probs=134.2

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      .++.-.+|.++..+...       ..|..+. ........+|+++.++.......|+-.|+.+.+....+..       .
T Consensus        56 ~dg~~nly~lDL~t~~i-------~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~-------p  121 (386)
T PF14583_consen   56 FDGNRNLYLLDLATGEI-------TQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV-------P  121 (386)
T ss_dssp             TTSS-EEEEEETTT-EE-------EE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE---------
T ss_pred             cCCCcceEEEEcccCEE-------EECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC-------C
Confidence            45557777777554332       2233332 2233567778888877666566788888887764322221       1


Q ss_pred             CCCeEEEEEe--cCCCeEEEcc----------------------CCCcEEEEeCCCCceeeccccCccceeEEEecC-CC
Q 019482          112 AGPQKCLSFS--VDGSRFAAGG----------------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DS  166 (340)
Q Consensus       112 ~~~v~~~~~~--~~~~~l~~~~----------------------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~  166 (340)
                      ..-+-...|.  .|+.+++-.-                      -...|.-.|+.+++....+ .....+..+.|+| |.
T Consensus       122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEE
T ss_pred             cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCC
Confidence            2333334553  3455443221                      1124556677777654333 3445678899999 55


Q ss_pred             CeEEEeeC---CC-eEEEEEccC-CeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          167 EFLATTST---DG-SARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       167 ~~l~~~~~---d~-~v~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      ..|+.|-.   +. .-|||-+++ +.....+.. ...+.+..=-|.|||..+.+.....++.+..|.-+|+.+++.....
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~  280 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM  280 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence            56666542   22 236676653 333333321 2234566677999999876655555666788999999988754322


Q ss_pred             eccCCCeeEEEECCCCCEEEEeeCC----------------CcEEEEeccCceEeeccc--------ccccccceeeEEE
Q 019482          241 RLLRKPASVLSISLDGKYLAMGSKD----------------GDICVVDVKKMEINHWSK--------RLHLGTSIALVEF  296 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~--------~~~~~~~i~~~~~  296 (340)
                      ..  .....+..++||++++-=+.|                .-|++++++.+.......        .++....=....|
T Consensus       281 ~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F  358 (386)
T PF14583_consen  281 EM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF  358 (386)
T ss_dssp             EE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred             eC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence            22  234456678899887654333                146678887765432111        1111111246789


Q ss_pred             ecCCeEEEE-EecCCcEEEEEecCCCC
Q 019482          297 CPTQRVVLT-ASKEWGAMITKLTVPAD  322 (340)
Q Consensus       297 ~~~~~~l~~-~~~dg~i~iw~~~~~~~  322 (340)
                      +|||++++- +...|...||-++.|..
T Consensus       359 SPDgk~VlF~Sd~~G~~~vY~v~i~~~  385 (386)
T PF14583_consen  359 SPDGKWVLFRSDMEGPPAVYLVEIPDD  385 (386)
T ss_dssp             -TTSSEEEEEE-TTSS-EEEEEE--CC
T ss_pred             CCCCCEEEEECCCCCCccEEEEeCccc
Confidence            999987654 55579999998887753

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.79  E-value=3.6e-06  Score=72.34  Aligned_cols=228  Identities=9%  Similarity=0.036  Sum_probs=133.4

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC---CCe-EEEEEecCCCeEEEccCCCcEEEEeCCCCceeec
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA---GPQ-KCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD  149 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~v-~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~  149 (340)
                      .+..+++++.++.+.-+|..+++...+.........-..   ..+ ..+..  ++..++.++.+|.+..+|.++|+.+.+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  145 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ  145 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence            356777888888899999988887766533211000000   000 01111  345677788899999999999998876


Q ss_pred             cccCccceeE-EEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc----eeeEEEccCCCcceEEEEEecCCcc
Q 019482          150 EPKAHKSVLD-MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK----IELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       150 ~~~~~~~i~~-~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      ..... .+.+ ...  .+..++.++.++.+..+|.++|+.+-.........    ..+.... ++.      ++.+..++
T Consensus       146 ~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~------v~~~~~~g  215 (394)
T PRK11138        146 TKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGG------AIVGGDNG  215 (394)
T ss_pred             ccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCE------EEEEcCCC
Confidence            64332 2221 111  24466677788999999999999887765321100    0111111 222      45567788


Q ss_pred             eEEEEECCCCcEEeeeeccCC-------CeeEEEECC--CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482          225 LLAVYDISTWNKIGHKRLLRK-------PASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  295 (340)
                      .+..+|..+++.+-.......       ....+.-+|  .+..+++++.+|.+..+|..+++.+-......    ...+.
T Consensus       216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~  291 (394)
T PRK11138        216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA  291 (394)
T ss_pred             EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE
Confidence            899999998876544321110       011112233  35567777889999999999998765432211    11222


Q ss_pred             EecCCeEEEEEecCCcEEEEEecC
Q 019482          296 FCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       296 ~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                        .++..|+.++.+|.+...+...
T Consensus       292 --~~~~~vy~~~~~g~l~ald~~t  313 (394)
T PRK11138        292 --VDGGRIYLVDQNDRVYALDTRG  313 (394)
T ss_pred             --EECCEEEEEcCCCeEEEEECCC
Confidence              2344566666777777666643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.78  E-value=1.6e-05  Score=67.25  Aligned_cols=236  Identities=15%  Similarity=0.127  Sum_probs=132.3

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCC-----------CCCCCeEEEEEecCCCeEEEcc
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-----------QDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      ...+....|+|+|+.++.... +.|.+++..++... ++.......+           +--+.-..+.||||+++|+...
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~  119 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQET-QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR  119 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEE-ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred             ccccccceeecCCCeeEEEec-CceEEEECCCCCeE-EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence            567889999999999998875 55999988766432 2211110000           0012235688999999988653


Q ss_pred             CC-C-----------------------------------cEEEEeCCCCceee-ccc----cCccceeEEEecCCCCeEE
Q 019482          132 VD-G-----------------------------------HLRIMHWPSLRIIL-DEP----KAHKSVLDMDFSLDSEFLA  170 (340)
Q Consensus       132 ~d-g-----------------------------------~i~~~d~~~~~~~~-~~~----~~~~~i~~~~~~~~~~~l~  170 (340)
                      .| .                                   .+.++|+.+++... ...    .....+..+.|.++++.|+
T Consensus       120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence            21 1                                   24445665554321 111    2233688899999988443


Q ss_pred             E--eeCCC---eEEEEEccCCeeEEEeecCCCCce---eeEEEc-cCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          171 T--TSTDG---SARIWKTEDGVAWTFLTRNSDEKI---ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       171 ~--~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      .  .+++.   .+.++|..++...........+.+   ....|. +++..++.  +.....-..|.+++...+... .+.
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~--~s~~~G~~hly~~~~~~~~~~-~lT  276 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW--ISERDGYRHLYLYDLDGGKPR-QLT  276 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE--EEETTSSEEEEEEETTSSEEE-ESS
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE--EEEcCCCcEEEEEccccccee-ccc
Confidence            3  33332   467778877665444443333333   345554 66665322  222334556777787776643 444


Q ss_pred             ccCCCeeE-EEECCCCCEEE-EeeC----CCcEEEEecc-CceEeecccccccccce-eeEEEecCCeEEEEEe
Q 019482          242 LLRKPASV-LSISLDGKYLA-MGSK----DGDICVVDVK-KMEINHWSKRLHLGTSI-ALVEFCPTQRVVLTAS  307 (340)
Q Consensus       242 ~~~~~i~~-~~~s~~~~~l~-~~~~----dg~i~i~d~~-~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~  307 (340)
                      ...-.|.. +.++++++.|+ ++..    ...|+..++. .++..+....    ... ..+.|||++++++-..
T Consensus       277 ~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~----~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  277 SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCE----DGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             -SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTT----SSTTEEEEE-TTSSEEEEEE
T ss_pred             cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCC----CCCceEEEECCCCCEEEEEE
Confidence            44556644 77888876655 4443    2356666777 5565554322    223 5899999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.78  E-value=3.5e-07  Score=81.23  Aligned_cols=183  Identities=15%  Similarity=0.166  Sum_probs=129.3

Q ss_pred             CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceee
Q 019482          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIEL  202 (340)
Q Consensus       123 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~  202 (340)
                      ++..++.|+-...+..+|+++.+......-....+.-+..  +++++.+|...|+|.+-|.++-+.+.++..+. +.+..
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs-~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS-GSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccc-cceee
Confidence            3446666766677888898887766544333334554544  58899999999999999999999999998554 55655


Q ss_pred             EEEccCCCcceEEEEEecC---------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCC-CCEEEEeeCCCcEEEEe
Q 019482          203 CRFSKDGTKPFLFCTVQRG---------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLD-GKYLAMGSKDGDICVVD  272 (340)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d  272 (340)
                      +  +-.|+.     ++++|         .|..|+|||+|..+.+..+..+.++ .-+.|.|. ...+++++..|...+-|
T Consensus       223 f--Dv~GNl-----LitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  223 F--DVQGNL-----LITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             e--eccCCe-----EEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence            4  445554     33333         3677999999988776555544433 55678885 46788888999999999


Q ss_pred             ccCc-eEeecccccc-cccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          273 VKKM-EINHWSKRLH-LGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       273 ~~~~-~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ..+. .+.......+ .+..+..+.++++++.++.|..+|.|.+|.
T Consensus       295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            4432 2211111112 134599999999999999999999999998

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=4.7e-06  Score=73.91  Aligned_cols=205  Identities=12%  Similarity=0.015  Sum_probs=128.8

Q ss_pred             EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-----cEEEEeCCC
Q 019482           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS  143 (340)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~  143 (340)
                      -+|++.+..++.|+.+|.|.+++-.- +....+..     .++ +.|..+....+..+|++.+.|+     .+++|+++.
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa-----~~~-siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQA-----YEQ-SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecccc-eeeehhee-----cch-hhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence            34678888999999999887776422 11122211     112 1234343333446777777664     499999864


Q ss_pred             Cc------ee--ecccc-----CccceeEEEecCCCCeEEEeeCCCeEEEEEc---cCCeeEEEeecCCCCceeeEEEcc
Q 019482          144 LR------II--LDEPK-----AHKSVLDMDFSLDSEFLATTSTDGSARIWKT---EDGVAWTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       144 ~~------~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~  207 (340)
                      .+      ++  .+...     ...++.+++.+.+-+.+|.|-.+|.|..+.=   +.......+.....++|+.+.+..
T Consensus       102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence            31      12  11111     2347889999999899999999999998852   122222233344567899999999


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcE-EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  286 (340)
                      +++..     +.......|.+|.+....+ ......++.++.|.++++....+++++. ..+.+|+.....+-..+..++
T Consensus       182 d~~s~-----lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~  255 (933)
T KOG2114|consen  182 DGKSV-----LFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGE  255 (933)
T ss_pred             CCcee-----EEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCC
Confidence            99863     2222345688898884442 3446777888999999886654555543 459999987655444443333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.76  E-value=1.9e-05  Score=67.81  Aligned_cols=228  Identities=12%  Similarity=0.119  Sum_probs=121.4

Q ss_pred             eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  135 (340)
                      ...+......+..+.++|+|++++. +.+|...|+.....+...            .+......|.+.++ +|+-...++
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~------------~G~g~~~vw~~~n~-yAv~~~~~~   90 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA------------FGSGLSFVWSSRNR-YAVLESSST   90 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE------------EEE-SEEEE-TSSE-EEEE-TTS-
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc------------cCceeEEEEecCcc-EEEEECCCe
Confidence            3445555666899999999998888 556768888743333211            13446788998554 566566788


Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      |.++.--+.+....+... ..+..+-.   |..|...+. +.|.+||.++++.+..+..   .+|..+.|+++++.+   
T Consensus        91 I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~v---  159 (443)
T PF04053_consen   91 IKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV---SAVKYVIWSDDGELV---  159 (443)
T ss_dssp             EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEE---
T ss_pred             EEEEEcCccccceEEcCC-cccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec---CCCcEEEEECCCCEE---
Confidence            999632222221122211 12333322   787777764 4899999999999998862   248999999999962   


Q ss_pred             EEEecCCcceEEEEECCCC-----------cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc
Q 019482          216 CTVQRGDKALLAVYDISTW-----------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR  284 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~-----------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  284 (340)
                        +..+ +..+.+++.+..           ............|.+..|..+  .++-.+.. .|+.  +..|+....   
T Consensus       160 --al~t-~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i---  228 (443)
T PF04053_consen  160 --ALVT-KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGII---  228 (443)
T ss_dssp             --EEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEE---
T ss_pred             --EEEe-CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceE---
Confidence              2223 446777665433           022223332567888899766  44444444 6776  445544322   


Q ss_pred             cccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          285 LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       285 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      .|...++.=+...|+.+.+.....|+.+..+.++.
T Consensus       229 ~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  229 AHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             EE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             EEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence            12245777788888778899999999998888763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.76  E-value=4.4e-07  Score=77.14  Aligned_cols=118  Identities=12%  Similarity=0.152  Sum_probs=81.1

Q ss_pred             CCeeEEEEcCC-CCeEEEE----ecCCC----EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           64 GDPMTIAVNPS-GDDFVCS----TTNGG----CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        64 ~~v~~~~~~~~-~~~l~~~----~~d~~----i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      ..+.++.|+.. ...+.+.    +.+|.    -.+|++..++... .   ....++....|.|.+++|+.+.++.|+.||
T Consensus       206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-v---svtsipL~s~v~~ca~sp~E~kLvlGC~Dg  281 (545)
T PF11768_consen  206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-V---SVTSIPLPSQVICCARSPSEDKLVLGCEDG  281 (545)
T ss_pred             CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-E---EEEEEecCCcceEEecCcccceEEEEecCC
Confidence            34567777763 3334332    23332    3456665443221 1   122234678999999999999999999999


Q ss_pred             cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe
Q 019482          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  187 (340)
                      .|.+||...+...  .....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       282 SiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  282 SIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             eEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            9999998765332  22233357889999999999999999999999986443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=1.1e-06  Score=77.63  Aligned_cols=113  Identities=15%  Similarity=0.188  Sum_probs=78.9

Q ss_pred             EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCE
Q 019482            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGC   87 (340)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i   87 (340)
                      +-.+|.|..+   ++|...-.  ....+.+.||.-..       +|....+..-|   +++++|+|..-.|+.|-.-|.+
T Consensus        19 ti~SWHPseP---lfAVA~fS--~er~GSVtIfadtG-------EPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~   83 (1416)
T KOG3617|consen   19 TISSWHPSEP---LFAVASFS--PERGGSVTIFADTG-------EPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVS   83 (1416)
T ss_pred             cccccCCCCc---eeEEEEec--CCCCceEEEEecCC-------CCCccccccee---hhhhccChHHHHHhhcccccee
Confidence            4468998544   34333211  12445677774321       22222333334   6679999999899999999999


Q ss_pred             EEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      .+|...+.+.....       ..|..+|..+.||++|..++++..-|.+.+|...
T Consensus        84 ~v~~~~~~e~htv~-------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   84 DVQKTNTTETHTVV-------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EEEecCCceeeeec-------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99998766543222       2488999999999999999999999999999765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=3e-07  Score=81.14  Aligned_cols=111  Identities=16%  Similarity=0.206  Sum_probs=86.1

Q ss_pred             eeEEEEcCCCCeEEEEec----CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           66 PMTIAVNPSGDDFVCSTT----NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      .+-..|+|...++|+++-    .|.|.||- +++++.....        ..-.+.+++|+|..-.|+.|..-|.+.+|..
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~   88 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT   88 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--------cceehhhhccChHHHHHhhccccceeEEEec
Confidence            445679999999987763    47788874 4444322221        1234567999999889999999999999998


Q ss_pred             CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~  185 (340)
                      .+.+.-.....|..+|..+.|+|+|..++++..-|.|.+|....
T Consensus        89 ~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   89 NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            87766655667778999999999999999999999999998763

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=3.5e-07  Score=74.87  Aligned_cols=206  Identities=12%  Similarity=0.031  Sum_probs=143.6

Q ss_pred             CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC--C-ceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccCC
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS--L-RIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDG  186 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~  186 (340)
                      |...|+.+.-. -.+++.+++.||.++.|--..  + +.+..+..|-..|.+++.+-++..+.+.+. |..++++|+++-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            66777766554 456999999999999997432  1 234445556678899999999999999777 999999999865


Q ss_pred             eeEEEeecCCCCceeeEEE--ccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482          187 VAWTFLTRNSDEKIELCRF--SKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMG  262 (340)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~  262 (340)
                      ..+.-++...  ....+.|  ++....  ....+....++.+.++|-....  .......|..+|..+.+.|-+..+++.
T Consensus        87 DminmiKL~~--lPg~a~wv~skGd~~--s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   87 DMINMIKLVD--LPGFAEWVTSKGDKI--SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             chhhhccccc--CCCceEEecCCCCee--eeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            4433222111  1122222  232221  1114555678899999977543  334456678899999999999999999


Q ss_pred             eCCCcEEEEeccC-ceEee-----ccc-------ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          263 SKDGDICVVDVKK-MEINH-----WSK-------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       263 ~~dg~i~i~d~~~-~~~~~-----~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ...|.|.-|..+. .+.+.     .++       .........++.|+|++..+.+-+.|..|+++.+...+
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence            9999999998873 11111     000       01113467899999999999999999999999997654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.70  E-value=7.1e-06  Score=71.75  Aligned_cols=230  Identities=12%  Similarity=0.075  Sum_probs=133.0

Q ss_pred             CCCeEEEEec-CCCEEEEEecCceeeeeeccccCC--------CCCCCCCeEE-----EEEecCCCeEEEc-cCCCcEEE
Q 019482           74 SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMP--------PLQDAGPQKC-----LSFSVDGSRFAAG-GVDGHLRI  138 (340)
Q Consensus        74 ~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~--------~~~~~~~v~~-----~~~~~~~~~l~~~-~~dg~i~~  138 (340)
                      ||++|+.-.. +..|-..+++..+....+......        ..+....|.+     +=+.|||+.+... -..+.+.+
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv  219 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA  219 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence            6777777654 445666666554433222111110        0112222221     2344566544322 23456777


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      .|.++.+....+.-.. ....++++|+|+++++.+.+    .++..-+..+...+..+....     .-++.++|++.  
T Consensus       220 ID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-----iea~vkdGK~~--  291 (635)
T PRK02888        220 VDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-----IEEAVKAGKFK--  291 (635)
T ss_pred             EECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-----HHHhhhCCCEE--
Confidence            7877766655543322 44678899999998887642    123222222221111111000     01334577752  


Q ss_pred             EEEEecCCcceEEEEECCC----CcEEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceE-----------
Q 019482          215 FCTVQRGDKALLAVYDIST----WNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI-----------  278 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~-----------  278 (340)
                         ..  .++.|.+.|.++    +..+.....-......+.++|||+++++++. ++.+.++|+.+.+.           
T Consensus       292 ---~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~  366 (635)
T PRK02888        292 ---TI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDA  366 (635)
T ss_pred             ---EE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccce
Confidence               22  367899999998    3333333334456788999999999888765 88999999988553           


Q ss_pred             -eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          279 -NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       279 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                       ......   +......+|.++|....|.--|..|..|++..
T Consensus       367 vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        367 VVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence             222221   33456778999999888999999999999975

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.67  E-value=7.2e-06  Score=71.70  Aligned_cols=184  Identities=10%  Similarity=0.028  Sum_probs=115.3

Q ss_pred             EcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCc
Q 019482           71 VNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLR  145 (340)
Q Consensus        71 ~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~  145 (340)
                      +.|||+.+... -..+.+.+.|.++.+...++..        .+....+.++|+|+++++.+.+    .++...+..+..
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V--------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d  271 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV--------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD  271 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEe--------CCCcccceECCCCCEEEEeccCcccCcceeeeccccCc
Confidence            45566655322 2335677777776665555432        1244567899999998877632    223333322211


Q ss_pred             eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC-----CeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-----GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      .+..+.-  ..+  -++.++|++...+  ++.|.+.|.++     .+.+..+..  ......+.++|||+++    ++++
T Consensus       272 ~~vvfni--~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPV--GKsPHGV~vSPDGkyl----yVan  339 (635)
T PRK02888        272 WVVVFNI--ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPV--PKNPHGVNTSPDGKYF----IANG  339 (635)
T ss_pred             eEEEEch--HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEEC--CCCccceEECCCCCEE----EEeC
Confidence            1111100  000  1345577766653  67899999988     345555543  3458899999999974    5677


Q ss_pred             CCcceEEEEECCCCcE------------EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          221 GDKALLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      ..+..+.++|+.+.+.            +.+.....++ ...+|.++|+...+-.-|..|-.||+.+
T Consensus       340 klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        340 KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence            7899999999988553            2233332233 4568999998888888899999999876

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.66  E-value=9.9e-05  Score=59.92  Aligned_cols=243  Identities=12%  Similarity=0.067  Sum_probs=140.9

Q ss_pred             eEEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc--CCC
Q 019482           67 MTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDG  134 (340)
Q Consensus        67 ~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg  134 (340)
                      -.+..+|+++.+++++          +.-.|.+||..+......+.....+..........++++.|+++++...  --.
T Consensus        39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~  118 (342)
T PF06433_consen   39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT  118 (342)
T ss_dssp             EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred             CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence            3467899999888643          3447999999998776655433221111122334568888998877653  345


Q ss_pred             cEEEEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEcc-CCeeEEEee----cCCCCceeeEEEccC
Q 019482          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTE-DGVAWTFLT----RNSDEKIELCRFSKD  208 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~-~~~~~~~~~----~~~~~~v~~~~~~~~  208 (340)
                      .|.|.|+..++.+..+.-. +   |...-| ..+.|.+-+.||++.-..+. .|+......    ...+..+..-++...
T Consensus       119 SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  119 SVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             eEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            6899999888876554322 1   222223 22347777789999999887 455542221    111112223344444


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEe--eeecc----------CCCeeEEEECCCCCEEEEeeC--------CC--
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKRLL----------RKPASVLSISLDGKYLAMGSK--------DG--  266 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~----------~~~i~~~~~s~~~~~l~~~~~--------dg--  266 (340)
                      +..     ++..+.+|.|+--|+.......  .....          .+...-+++++..+.|++.-.        |+  
T Consensus       195 ~~~-----~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt  269 (342)
T PF06433_consen  195 GGR-----LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT  269 (342)
T ss_dssp             TTE-----EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred             CCe-----EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence            333     3335667888887777654321  11110          123345778876666555321        22  


Q ss_pred             cEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEE-ecCCcEEEEEecCCC
Q 019482          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTA-SKEWGAMITKLTVPA  321 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~iw~~~~~~  321 (340)
                      .|-++|+.+++.+..+...   .++.+++.+.|.+ +|++. ..++.+.+||....+
T Consensus       270 eVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk  323 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK  323 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred             EEEEEECCCCeEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence            4788899999999887653   3688999998774 56554 457899999987543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1.6e-05  Score=70.72  Aligned_cols=179  Identities=10%  Similarity=0.047  Sum_probs=113.4

Q ss_pred             EEEecCCCC-eeEEEEcCCCCeEEEEecCC-----CEEEEEecCceeee--eec-cccCC--CC-CCCCCeEEEEEecCC
Q 019482           57 YVFDESEGD-PMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDI--NLL-AKKMP--PL-QDAGPQKCLSFSVDG  124 (340)
Q Consensus        57 ~~~~~h~~~-v~~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~--~~~-~~~~~--~~-~~~~~v~~~~~~~~~  124 (340)
                      ..++.+... |..+....+..+|++.+.|+     .++||+++..+...  ... .....  .. ....++.+++.+.+-
T Consensus        58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l  137 (933)
T KOG2114|consen   58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL  137 (933)
T ss_pred             ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc
Confidence            445666666 44444444446888877664     48999997542111  111 00000  11 235788999999999


Q ss_pred             CeEEEccCCCcEEEEeCC----CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCce
Q 019482          125 SRFAAGGVDGHLRIMHWP----SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI  200 (340)
Q Consensus       125 ~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v  200 (340)
                      +.+|+|-.+|.|..+.-+    .+..........++|+.+++..+++.++....-..|.+|.+....+......+++...
T Consensus       138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~l  217 (933)
T KOG2114|consen  138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISL  217 (933)
T ss_pred             cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccc
Confidence            999999999999988422    1222222233446899999998888733333456899999985544444445666778


Q ss_pred             eeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          201 ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      .|..+++....      +.++.+..+.+||....++-..+.
T Consensus       218 nCss~~~~t~q------fIca~~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  218 NCSSFSDGTYQ------FICAGSEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             eeeecCCCCcc------EEEecCceEEEEcCCCcceeeeec
Confidence            89988877664      333446679999988655544444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.62  E-value=7.7e-05  Score=57.35  Aligned_cols=110  Identities=12%  Similarity=0.020  Sum_probs=80.3

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  154 (340)
                      ..+++.|+..+.+.--|..+++...+....        ..+.+-+.- -|++++.|...|.+++.+.++|+....+....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhC--------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence            457778888888888888888776554321        223322222 46789999999999999999998877665433


Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  193 (340)
                      .--......+++..+..|+.|++.+..|.++..++...+
T Consensus        94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            211234457789999999999999999999888877654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=0.00027  Score=60.37  Aligned_cols=241  Identities=11%  Similarity=0.158  Sum_probs=157.6

Q ss_pred             CeeEEEEcCCCCeEEEEecCC-CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNG-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~  142 (340)
                      ....+...|++..+....... .+...+...... .....     . .......++.++.+..+ +....+..|.+.|..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~-~~~~~-----~-g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~  104 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTV-TQSLS-----V-GGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA  104 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeeccccccee-eeecc-----C-CCccccceeeCCCCCeEEEecCCCCeEEEEcCc
Confidence            566788888886555443322 344444431111 11100     0 00334577888888744 444456889999977


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      +.+......... ....++++|+++.+..+..   ++++.+.|..+++.+....... . ...++++|+|...    ..+
T Consensus       105 ~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~-P~~~a~~p~g~~v----yv~  177 (381)
T COG3391         105 TNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-T-PTGVAVDPDGNKV----YVT  177 (381)
T ss_pred             ccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-C-cceEEECCCCCeE----EEE
Confidence            766665544333 5678999999987776665   6899999999888888854332 2 3899999999964    344


Q ss_pred             cCCcceEEEEECCCCcEEe-e---eeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeeccccccccccee
Q 019482          220 RGDKALLAVYDISTWNKIG-H---KRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTSIA  292 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~i~  292 (340)
                      ...++.|.+.|........ .   .......-..+.++|+|.++.+....   +.+...|..++............ ...
T Consensus       178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~  256 (381)
T COG3391         178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APR  256 (381)
T ss_pred             ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCC
Confidence            4678999999977665542 1   01112334678999999977776544   58999999998877653222212 466


Q ss_pred             eEEEecCCeEEEEEecC-CcEEEEEecCC
Q 019482          293 LVEFCPTQRVVLTASKE-WGAMITKLTVP  320 (340)
Q Consensus       293 ~~~~~~~~~~l~~~~~d-g~i~iw~~~~~  320 (340)
                      .+..+|+|..+...... +.+.+-+....
T Consensus       257 ~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         257 GVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             ceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            78999999888777444 67777776543

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.60  E-value=0.00016  Score=60.40  Aligned_cols=241  Identities=11%  Similarity=0.091  Sum_probs=106.6

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEc-----------CCCCeEEEEe-cCCCEEEEEecCce----
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN-----------PSGDDFVCST-TNGGCKLFEVYGGA----   96 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----------~~~~~l~~~~-~d~~i~iw~~~~~~----   96 (340)
                      ....+...++++....+. .-..+..+..-.++....-|+           .+.++|+..+ .++.|+|.|+.+..    
T Consensus        35 ~pD~LatVDvdP~S~tYg-qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~  113 (461)
T PF05694_consen   35 KPDYLATVDVDPDSPTYG-QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPR  113 (461)
T ss_dssp             ---EEEEEE--TTSTTTT-SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-E
T ss_pred             CCCeEEEEECCCCCCCcc-cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCc
Confidence            345566677776554432 112222222223456666665           2345776665 66789999997432    


Q ss_pred             eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC------CCcEEEEeCCCCceeeccccCcc---ceeEEEecCCCC
Q 019482           97 TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHK---SVLDMDFSLDSE  167 (340)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~---~i~~~~~~~~~~  167 (340)
                      ..+.+..++...-..-.....+-.-|+|+.++++-.      .|.+.++|-++.+..........   --..+-|.|..+
T Consensus       114 l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n  193 (461)
T PF05694_consen  114 LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN  193 (461)
T ss_dssp             EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT
T ss_pred             eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC
Confidence            222211101000001122334445578888877532      35688888777766655443222   356778889888


Q ss_pred             eEEEee--------------------CCCeEEEEEccCCeeEEEeecCCCC-ceeeEEEccCCCcceEEEEEecCCcceE
Q 019482          168 FLATTS--------------------TDGSARIWKTEDGVAWTFLTRNSDE-KIELCRFSKDGTKPFLFCTVQRGDKALL  226 (340)
Q Consensus       168 ~l~~~~--------------------~d~~v~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (340)
                      .++|..                    ...++.+||+.+.+.++++....++ .+..+.|..+-....-+  +.+.-..+|
T Consensus       194 vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF--vg~aLss~i  271 (461)
T PF05694_consen  194 VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF--VGCALSSSI  271 (461)
T ss_dssp             EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE--EEEE--EEE
T ss_pred             EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE--EEEeccceE
Confidence            888764                    2357999999999999999865443 45678887664432222  222223334


Q ss_pred             E-EEECCCCc----EEeeeecc-----------------CCCeeEEEECCCCCEEEEee-CCCcEEEEeccCc
Q 019482          227 A-VYDISTWN----KIGHKRLL-----------------RKPASVLSISLDGKYLAMGS-KDGDICVVDVKKM  276 (340)
Q Consensus       227 ~-i~d~~~~~----~~~~~~~~-----------------~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~  276 (340)
                      . +|..+.++    .+-.+...                 ..-++.+.+|.|.++|.+.+ ..|.|+.||+...
T Consensus       272 ~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  272 WRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            4 44333332    11111110                 23468899999999998876 4899999999763

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=8.6e-05  Score=63.31  Aligned_cols=224  Identities=11%  Similarity=0.112  Sum_probs=150.3

Q ss_pred             CeeEEEEcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---CCcEEEEe
Q 019482           65 DPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---DGHLRIMH  140 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~~d  140 (340)
                      ....++.++.+..++.. ..+..|.+.|.............        .....++++|+++.+..+..   ++++.+.|
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid  146 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--------LGPVGLAVDPDGKYVYVANAGNGNNTVSVID  146 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--------cCCceEEECCCCCEEEEEecccCCceEEEEe
Confidence            35578888888855544 44578999997666554433221        25578999999987777655   68899999


Q ss_pred             CCCCceeeccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEE-Ee--ecCCCCceeeEEEccCCCcceEEE
Q 019482          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWT-FL--TRNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~-~~--~~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      -.+++..........+ ..++++|+|+.++.+. .++.|.+.|.+...... .-  ..........+.++|++.+.++  
T Consensus       147 ~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV--  223 (381)
T COG3391         147 AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV--  223 (381)
T ss_pred             CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEE--
Confidence            8888877765444445 8899999999766655 68899999977655543 10  0112234678999999997543  


Q ss_pred             EEecCCcceEEEEECCCCcEEeeeeccCC-CeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEeeccccccc-ccceee
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKRLLRK-PASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHL-GTSIAL  293 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-~~~i~~  293 (340)
                      ......++.+...|..++........... ....+..+|+|+++.+... .+.+.+.|..+.........+.. ...+..
T Consensus       224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~  303 (381)
T COG3391         224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVS  303 (381)
T ss_pred             EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccccccccee
Confidence            23333357999999998876554222222 4566889999999998844 48899999988776654432211 123555


Q ss_pred             EEEecC
Q 019482          294 VEFCPT  299 (340)
Q Consensus       294 ~~~~~~  299 (340)
                      +++.+.
T Consensus       304 ~~~~~~  309 (381)
T COG3391         304 IAISPL  309 (381)
T ss_pred             ccceee
Confidence            666553

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.57  E-value=2.2e-08  Score=85.26  Aligned_cols=197  Identities=15%  Similarity=0.077  Sum_probs=127.8

Q ss_pred             CCeeEEEEcCC--CCeEEEEecCCCEEEEEecCceee-eeeccccCCCCCCCCCeEEEEEec-CCCeEEEcc----CCCc
Q 019482           64 GDPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGG----VDGH  135 (340)
Q Consensus        64 ~~v~~~~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~  135 (340)
                      ..+.|+++.-+  ...+++|..+|.|.+-.+...... ...      ..++..++++++|++ |.+.||+|-    .|..
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~------tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV------TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCccccccee------cccccccccccccccccHHHHHhhhhhhcccCC
Confidence            34777777653  347889999999999888654332 111      123668899999998 666777774    3567


Q ss_pred             EEEEeCCCCce----eecccc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEcc-C
Q 019482          136 LRIMHWPSLRI----ILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSK-D  208 (340)
Q Consensus       136 i~~~d~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~  208 (340)
                      +.|||+.++-.    ...+.. ......+++|-.+.+++++|.....++++|++.... ...+.   ...+..+..+| .
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~  207 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFS  207 (783)
T ss_pred             ccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCC
Confidence            99999987621    111222 223566888988889999999989999999984322 12221   12456677777 5


Q ss_pred             CCcceEEEEEecCCcceEEEEE-CCCCcE-Eeeeecc----CCCeeEEEECCCC-CEEEEee-CCCcEEEEeccC
Q 019482          209 GTKPFLFCTVQRGDKALLAVYD-ISTWNK-IGHKRLL----RKPASVLSISLDG-KYLAMGS-KDGDICVVDVKK  275 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d-~~~~~~-~~~~~~~----~~~i~~~~~s~~~-~~l~~~~-~dg~i~i~d~~~  275 (340)
                      +.+      +....|+.|.+|| .++-+. +......    ...+..++|+|.. ..+++.. ..+.|++||+..
T Consensus       208 ~nY------~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  208 PNY------FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCc------eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            554      5556699999999 443332 2111111    1248899999943 3444444 457899998853

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.55  E-value=7.4e-06  Score=70.06  Aligned_cols=185  Identities=17%  Similarity=0.078  Sum_probs=113.5

Q ss_pred             CCeEEEEEecCCCeEEEcc---CC-CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEee-CCC--eEEEEEccC
Q 019482          113 GPQKCLSFSVDGSRFAAGG---VD-GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDG--SARIWKTED  185 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~---~d-g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~--~v~iwd~~~  185 (340)
                      ..+..-+|+|+++.++...   .. ..+.++++.+++...... ....-..-+|+|||+.|+.+. .||  .|++.|+..
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~  271 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG  271 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC
Confidence            4566778999988765442   22 469999998877554332 233345678999999876554 555  466677776


Q ss_pred             CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee
Q 019482          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  263 (340)
                      ++. ..+.. ..+.-..-.|+|||+.++    ++....|  .|.++|...... ..+......-....|+|||++|+..+
T Consensus       272 ~~~-~~Lt~-~~gi~~~Ps~spdG~~iv----f~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         272 KNL-PRLTN-GFGINTSPSWSPDGSKIV----FTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             Ccc-eeccc-CCccccCccCCCCCCEEE----EEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEe
Confidence            663 33432 333445788999999853    3344444  566677766654 33333333333778999999999877


Q ss_pred             CC-Cc--EEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482          264 KD-GD--ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       264 ~d-g~--i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      .. |.  |.+.|+.++...+.+..   ......-.|.++++.+...+.
T Consensus       345 ~~~g~~~i~~~~~~~~~~~~~lt~---~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         345 SSGGQWDIDKNDLASGGKIRILTS---TYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             ccCCceeeEEeccCCCCcEEEccc---cccCCCCCcCCCCceEEEecc
Confidence            53 44  66777766554333321   223445567777766654443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.54  E-value=0.00022  Score=56.30  Aligned_cols=201  Identities=11%  Similarity=0.117  Sum_probs=111.7

Q ss_pred             EEecCCCCeeEEEEcCCCCeE-EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           58 VFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      .+.+-.+.+..++|+|+.+.| ++....+.|..++.+ ++....+.-      ...+-...+++..++.++++--+++.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l------~g~~D~EgI~y~g~~~~vl~~Er~~~L   88 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL------DGFGDYEGITYLGNGRYVLSEERDQRL   88 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-------SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC------CCCCCceeEEEECCCEEEEEEcCCCcE
Confidence            344556679999999986655 555566777666653 444444322      123567889998888777776678999


Q ss_pred             EEEeCCCCce------eec----cc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccC---CeeEEEee-------cC
Q 019482          137 RIMHWPSLRI------ILD----EP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLT-------RN  195 (340)
Q Consensus       137 ~~~d~~~~~~------~~~----~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~-------~~  195 (340)
                      .++++.....      ...    +. .+...+..++|+|.++.|+.+-...-..+|.++.   ...+....       ..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            9998843211      111    11 1334689999999877777776666677777654   22211111       11


Q ss_pred             CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC---------CCeeEEEECCCCCEEEEeeCCC
Q 019482          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDG  266 (340)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg  266 (340)
                      ....+.+++++|....+    ++.+.....|..+| .+|+.+..+....         ...-.++|.++|++.++ ++-+
T Consensus       169 ~~~d~S~l~~~p~t~~l----liLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpN  242 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHL----LILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPN  242 (248)
T ss_dssp             -SS---EEEEETTTTEE----EEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTT
T ss_pred             eeccccceEEcCCCCeE----EEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCc
Confidence            22357889999987764    45577888899999 6677666555443         24678999999865554 4655


Q ss_pred             cEEEE
Q 019482          267 DICVV  271 (340)
Q Consensus       267 ~i~i~  271 (340)
                      ..++|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            55554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.52  E-value=0.0001  Score=62.52  Aligned_cols=251  Identities=14%  Similarity=0.105  Sum_probs=133.6

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee-------------------------eeccccCCC-----------
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-------------------------NLLAKKMPP-----------  108 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-------------------------~~~~~~~~~-----------  108 (340)
                      .|+.+.|.++..-|+++...|.|.||.....+...                         .+.......           
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47889999998899999999999999886543211                         000000000           


Q ss_pred             CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc--cc------CccceeEEEecC-----CC---CeEEEe
Q 019482          109 LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--PK------AHKSVLDMDFSL-----DS---EFLATT  172 (340)
Q Consensus       109 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--~~------~~~~i~~~~~~~-----~~---~~l~~~  172 (340)
                      ....++|++++.|.=| +++.|.++|.+.|.|++....+...  ..      ....++++.|.-     |+   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            0125889999998555 9999999999999999876655431  11      112577888852     33   368888


Q ss_pred             eCCCeEEEEEccC---CeeEEEee---cCCCCceeeEE-EccCCCcce---------------EEEEEecCCcceEEEEE
Q 019482          173 STDGSARIWKTED---GVAWTFLT---RNSDEKIELCR-FSKDGTKPF---------------LFCTVQRGDKALLAVYD  230 (340)
Q Consensus       173 ~~d~~v~iwd~~~---~~~~~~~~---~~~~~~v~~~~-~~~~~~~~~---------------~~~~~~~~~d~~i~i~d  230 (340)
                      ...|.+.+|.+.-   +.-...+.   ..+.+++..+. ++.+.....               .-.++....+..++++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            9999999998751   21111111   12334444443 322211100               00122233467799999


Q ss_pred             CCCCcEEeeeeccCCCeeEEEEC-----CCCCEEEEeeCCCcEEEEeccCceEeecccccc--cccceeeEEEecCCeEE
Q 019482          231 ISTWNKIGHKRLLRKPASVLSIS-----LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH--LGTSIALVEFCPTQRVV  303 (340)
Q Consensus       231 ~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l  303 (340)
                      ..+.+..............+.+-     ..+..|++-..+|.+++|.+...+.+.......  ....+....++++|..+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence            98877654444221222334442     356678888899999999999877765543211  12356778889999977


Q ss_pred             EEEecCCcEEEEEe
Q 019482          304 LTASKEWGAMITKL  317 (340)
Q Consensus       304 ~~~~~dg~i~iw~~  317 (340)
                      +-.+.. .+.++.+
T Consensus       322 ~~~gps-E~~l~sv  334 (395)
T PF08596_consen  322 YWTGPS-EIQLFSV  334 (395)
T ss_dssp             EE-SSS-EEEEEEE
T ss_pred             EEeCcc-cEEEEEE
Confidence            766554 3333333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.52  E-value=0.00055  Score=62.40  Aligned_cols=154  Identities=14%  Similarity=0.200  Sum_probs=103.0

Q ss_pred             ceeEEEecCC-CCeEEEee----------CCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          156 SVLDMDFSLD-SEFLATTS----------TDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       156 ~i~~~~~~~~-~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      .+.++.|..| +.++++|.          ..|.|.++.+..++.+.... ..-.+.+.++.-- +|+       +.++-.
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngk-------llA~In  847 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGK-------LLAGIN  847 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCe-------EEEecC
Confidence            4555668776 66777775          24788888887744433332 1223444444322 444       334557


Q ss_pred             ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce--EeecccccccccceeeEEEecCCe
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      .+|++|+..+.+.++.-..+..++..+...-.|..+++|.--+++.+...+..+  ........+ ....+++.+-.+ .
T Consensus       848 ~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~-p~Wmtaveil~~-d  925 (1096)
T KOG1897|consen  848 QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYN-PNWMTAVEILDD-D  925 (1096)
T ss_pred             cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhC-ccceeeEEEecC-c
Confidence            789999999887776666777889999999999999999988888876665544  444433334 567888887654 4


Q ss_pred             EEEEEecCCcEEEEEecC
Q 019482          302 VVLTASKEWGAMITKLTV  319 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~~~~  319 (340)
                      .++.+..+|.+++-..+.
T Consensus       926 ~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  926 TYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             eEEeecccccEEEEEecC
Confidence            566666788888777663

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.50  E-value=6.7e-06  Score=70.30  Aligned_cols=166  Identities=16%  Similarity=0.088  Sum_probs=107.2

Q ss_pred             cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEee---CC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS---TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      .+.+-|.. +.....+......+..-+|+|+++.++..+   .. ..+.++++.+++....+.  ..+.-...+|+|||+
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~  250 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGS  250 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCC
Confidence            44444543 444444444455677789999998766553   22 469999999887766654  233456789999998


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC-C--cEEEEeccCceEeeccccccc
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD-G--DICVVDVKKMEINHWSKRLHL  287 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~  287 (340)
                      .+.+  .......-.|.++|+...+.. .+....+.-+.-.|+|||++++..+.. |  .|.++|.+.....+...... 
T Consensus       251 ~l~f--~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-  326 (425)
T COG0823         251 KLAF--SSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-  326 (425)
T ss_pred             EEEE--EECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-
Confidence            7422  222334456788888877743 344444444577899999999887653 3  47777887776654443322 


Q ss_pred             ccceeeEEEecCCeEEEEEecC
Q 019482          288 GTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       288 ~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                        .-..-.|+|||++|+..+..
T Consensus       327 --~~~~p~~SpdG~~i~~~~~~  346 (425)
T COG0823         327 --GNSNPVWSPDGDKIVFESSS  346 (425)
T ss_pred             --CCcCccCCCCCCEEEEEecc
Confidence              12267899999998877753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.49  E-value=0.00019  Score=55.31  Aligned_cols=70  Identities=20%  Similarity=0.239  Sum_probs=54.2

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  151 (340)
                      -|++++.|...|.+++.+.+++.....+....        .|. .....+++.++..++.|++.+..|..+..++.+.+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~--------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE--------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehh--------hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            47789999999999999999997766664322        121 23456788899999999999999998887776644

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.46  E-value=1.1e-07  Score=81.24  Aligned_cols=201  Identities=15%  Similarity=0.242  Sum_probs=130.3

Q ss_pred             CCCeEEEEEecCC--CeEEEccCCCcEEEEeCCCCce--eeccccCccceeEEEecC-CCCeEEEee----CCCeEEEEE
Q 019482          112 AGPQKCLSFSVDG--SRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSL-DSEFLATTS----TDGSARIWK  182 (340)
Q Consensus       112 ~~~v~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~d~~v~iwd  182 (340)
                      ...+.|+++.-+.  ..+++|..+|.|.+-.++...-  ....+++..+.++++|++ |.+.||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3566777776643  4778888999999988764322  223445566899999999 777787774    356899999


Q ss_pred             ccCC--eeE--EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC-CCC
Q 019482          183 TEDG--VAW--TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGK  257 (340)
Q Consensus       183 ~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~  257 (340)
                      +.++  .+.  ..+.........+++|..+.+.     +.+|.....+.++|++.... .........+..+..+| .+.
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~kl-----vlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~n  209 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKL-----VLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPN  209 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcch-----hhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCC
Confidence            9876  222  1222212234568888877775     67777788999999984221 11122233566678888 778


Q ss_pred             EEEEeeCCCcEEEEe-ccCce-Eeecccccc--cccceeeEEEecCC-eEEEEEecC-CcEEEEEecC
Q 019482          258 YLAMGSKDGDICVVD-VKKME-INHWSKRLH--LGTSIALVEFCPTQ-RVVLTASKE-WGAMITKLTV  319 (340)
Q Consensus       258 ~l~~~~~dg~i~i~d-~~~~~-~~~~~~~~~--~~~~i~~~~~~~~~-~~l~~~~~d-g~i~iw~~~~  319 (340)
                      |+++-. ||.|.+|| ...-+ ++..+....  ....+..++|.|.. ..+++.+.| ++|+++++..
T Consensus       210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            888776 89999999 33322 222221111  01248999999954 356666665 7788888753

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.40  E-value=0.00025  Score=55.99  Aligned_cols=195  Identities=11%  Similarity=0.130  Sum_probs=106.5

Q ss_pred             CCeEEEEEecCCC-eEEEccCCCcEEEEeCCCCceeeccccC-ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe---
Q 019482          113 GPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV---  187 (340)
Q Consensus       113 ~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~---  187 (340)
                      ..+..++|+|+.+ ++++....+.|..++. +|+.+.++.-. .+....+++..++.++++.-.++.+.++++....   
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~  100 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL  100 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence            4599999999755 6667777888888886 46666555332 3467889998888777777678999999984321   


Q ss_pred             ---eEEEee----cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC---CcEEeee--------eccCCCeeE
Q 019482          188 ---AWTFLT----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---WNKIGHK--------RLLRKPASV  249 (340)
Q Consensus       188 ---~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~--------~~~~~~i~~  249 (340)
                         ....+.    ...+..+..++|+|.+..++     .+....-..+|.++.   ...+...        ...-..+.+
T Consensus       101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-----v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~  175 (248)
T PF06977_consen  101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-----VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG  175 (248)
T ss_dssp             -EEEEEEEE---S---SS--EEEEEETTTTEEE-----EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred             chhhceEEecccccCCCcceEEEEEcCCCCEEE-----EEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence               112222    12334588999999988733     333343344554432   1111111        112245788


Q ss_pred             EEECCC-CCEEEEeeCCCcEEEEeccCceEeeccc--cccc-----ccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482          250 LSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSK--RLHL-----GTSIALVEFCPTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       250 ~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iw  315 (340)
                      ++++|. +++++....+..|..+| .+|+++..+.  .+.+     -.....|+|.++|++.++. +-+..+++
T Consensus       176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            999995 56666677788899999 5565544332  1111     1257899999999765555 44444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.38  E-value=0.0014  Score=57.99  Aligned_cols=194  Identities=12%  Similarity=0.095  Sum_probs=113.6

Q ss_pred             CCCEEEEEecCceeeeeeccccCC--CCCCC-----------CCe-EEEEEecCCCeEEEccCCC---------------
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMP--PLQDA-----------GPQ-KCLSFSVDGSRFAAGGVDG---------------  134 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~--~~~~~-----------~~v-~~~~~~~~~~~l~~~~~dg---------------  134 (340)
                      ++.+..+|..+++...+.......  ..+..           ..+ ...++.+.+..++.++.++               
T Consensus       174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~  253 (488)
T cd00216         174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL  253 (488)
T ss_pred             CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence            577888898888877665432110  00000           111 1244555556777776554               


Q ss_pred             ---cEEEEeCCCCceeeccccCcccee------EEEec----CCCC---eEEEeeCCCeEEEEEccCCeeEEEeecCCCC
Q 019482          135 ---HLRIMHWPSLRIILDEPKAHKSVL------DMDFS----LDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (340)
Q Consensus       135 ---~i~~~d~~~~~~~~~~~~~~~~i~------~~~~~----~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  198 (340)
                         .|.-+|..+++.............      ...+.    -++.   .++.++.+|.+...|.++|+.+-......  
T Consensus       254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--  331 (488)
T cd00216         254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--  331 (488)
T ss_pred             ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--
Confidence               699999999998876543211111      00111    1333   57788889999999999999877654221  


Q ss_pred             ceeeEEEccCCCcceEEE-------------EEecCCcceEEEEECCCCcEEeeeeccC--------CCeeEEEECCCCC
Q 019482          199 KIELCRFSKDGTKPFLFC-------------TVQRGDKALLAVYDISTWNKIGHKRLLR--------KPASVLSISLDGK  257 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~-------------~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~i~~~~~s~~~~  257 (340)
                        ..++.+|  ..+++..             ......++.+.-.|..+++.+-......        .+...-...-.+.
T Consensus       332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~  407 (488)
T cd00216         332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN  407 (488)
T ss_pred             --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence              1223333  2111100             0012346789999999998775554331        1111101112567


Q ss_pred             EEEEeeCCCcEEEEeccCceEeeccc
Q 019482          258 YLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       258 ~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      .+++++.||.|+.+|.++++.+-...
T Consensus       408 ~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         408 LVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             eEEEECCCCeEEEEECCCCceeeEEE
Confidence            88999999999999999999887654

The alignment model contains an 8-bladed beta-propeller.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.37  E-value=9.2e-05  Score=61.83  Aligned_cols=178  Identities=12%  Similarity=0.167  Sum_probs=105.9

Q ss_pred             CcEEEEeCCCCceeeccccC-ccceeEEE---ecCC----CCeEEEeeC----------CCeEEEEEccCC-----eeEE
Q 019482          134 GHLRIMHWPSLRIILDEPKA-HKSVLDMD---FSLD----SEFLATTST----------DGSARIWKTEDG-----VAWT  190 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~-~~~i~~~~---~~~~----~~~l~~~~~----------d~~v~iwd~~~~-----~~~~  190 (340)
                      +.|++.|..+.+.+..+.-. .+.+.+++   +..+    ..+|+.|+.          .|.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35788887777665443322 22444443   3332    456777652          288999999884     3322


Q ss_pred             EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (340)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  270 (340)
                      .......++|++++-- ++..     ++  +.++.|.+|++...+.+........++...+....++++++|.....+.+
T Consensus        82 i~~~~~~g~V~ai~~~-~~~l-----v~--~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~  153 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGRL-----VV--AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSL  153 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTEE-----EE--EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEeecCcceEhhhh-CCEE-----EE--eecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEE
Confidence            2223346778888766 3331     22  22578999999887722222222233333444444669999998888998


Q ss_pred             EeccC-ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          271 VDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       271 ~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +..+. .+.+..+........++++.|-+|++.++.+..+|.+.++.++.
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            86553 23233332222245689999987777999999999999999974

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.37  E-value=8.6e-05  Score=66.40  Aligned_cols=158  Identities=15%  Similarity=0.131  Sum_probs=96.6

Q ss_pred             cceeEEEecCCCCeEEEee------CCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE-------EEe
Q 019482          155 KSVLDMDFSLDSEFLATTS------TDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC-------TVQ  219 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~------~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~  219 (340)
                      ..+.+.+++|+|+.++...      .|.  .|.+++. .+.. ..+....  ......|+|+|..+.+..       +..
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            3678899999999877665      243  4555554 2222 3343222  378899999988643210       011


Q ss_pred             cCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE---EeccCceEee----ccccccccccee
Q 019482          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV---VDVKKMEINH----WSKRLHLGTSIA  292 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i---~d~~~~~~~~----~~~~~~~~~~i~  292 (340)
                      ....+.+.+.+++.+....   .....|..+.|||||..++... +++|++   -....++...    .+.. .....+.
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~-~l~~~~~  500 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP-GLGDTAV  500 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec-ccCCccc
Confidence            1233455555666554432   3355799999999999988876 477777   4444454111    1111 1133468


Q ss_pred             eEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          293 LVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      ++.|..++.++ .+..++...+|.+.....
T Consensus       501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             cceEecCCEEE-EEecCCCCceEEEecCCc
Confidence            89999999855 556666677888877654

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.36  E-value=0.00058  Score=58.06  Aligned_cols=205  Identities=15%  Similarity=0.165  Sum_probs=107.8

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecccc-CCCCCCCCCeEEEEEec-----CC---CeE
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSV-----DG---SRF  127 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~---~~l  127 (340)
                      ..++...++|++++.|.-| ++|.|..+|.+.|.|++....+......+ .........++++.|+.     |+   -.+
T Consensus        80 ~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             hheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            3455567899999998555 89999999999999998887665532222 11222456788888874     33   378


Q ss_pred             EEccCCCcEEEEeCC--C-Ccee----eccccCccceeEEE-ecCC---------------------CCeEEEeeCCCeE
Q 019482          128 AAGGVDGHLRIMHWP--S-LRII----LDEPKAHKSVLDMD-FSLD---------------------SEFLATTSTDGSA  178 (340)
Q Consensus       128 ~~~~~dg~i~~~d~~--~-~~~~----~~~~~~~~~i~~~~-~~~~---------------------~~~l~~~~~d~~v  178 (340)
                      ++|...|.+.+|.+.  . +...    .....+.++|..+. ++.+                     ..+++.+ .+..+
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~i  237 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDI  237 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccce
Confidence            889999999999874  1 1111    11112333443333 2211                     1134444 46789


Q ss_pred             EEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC----CCeeEEEECC
Q 019482          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR----KPASVLSISL  254 (340)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~i~~~~~s~  254 (340)
                      +++...+.+...... ........+.+-+-.....-.+++.-..+|.+++|.+...+.+.......    ..+....+++
T Consensus       238 rv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             EEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            999998877765554 22123334445321101112235555679999999999988887776543    2344567788


Q ss_pred             CCCEEEEeeC
Q 019482          255 DGKYLAMGSK  264 (340)
Q Consensus       255 ~~~~l~~~~~  264 (340)
                      +|..++..+.
T Consensus       317 ~Gdi~~~~gp  326 (395)
T PF08596_consen  317 NGDIFYWTGP  326 (395)
T ss_dssp             TS-EEEE-SS
T ss_pred             CCCEEEEeCc
Confidence            8887766654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.9e-06  Score=72.66  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=80.6

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcccee-EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF  191 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~  191 (340)
                      ..+.-+.|+|.-.+||.+..+|.|.+..+. .+.+..++-+...++ +++|.|||+.|+.|-.||+|++.|++++..+..
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            567889999999999999999999999987 777877875666666 999999999999999999999999999988887


Q ss_pred             eecCCCCceeeEEEcc
Q 019482          192 LTRNSDEKIELCRFSK  207 (340)
Q Consensus       192 ~~~~~~~~v~~~~~~~  207 (340)
                      ........|.++-|++
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            5444556788888874

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.34  E-value=0.00073  Score=59.82  Aligned_cols=235  Identities=11%  Similarity=0.084  Sum_probs=133.0

Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCe-EEEEEecCCCeEEEcc---------CCCcEEEEeCCCCc
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQ-KCLSFSVDGSRFAAGG---------VDGHLRIMHWPSLR  145 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~  145 (340)
                      ..++.++.++.|.-+|.++++...+.......  .....+ ....+. + ..++.++         .++.+..+|..+++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~--~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~  186 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV--PPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGK  186 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCc--CcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCc
Confidence            67888888999999999999887766432110  000000 011111 2 3444443         36789999999998


Q ss_pred             eeeccccCcc--------------------ce-eEEEecCCCCeEEEeeCCC------------------eEEEEEccCC
Q 019482          146 IILDEPKAHK--------------------SV-LDMDFSLDSEFLATTSTDG------------------SARIWKTEDG  186 (340)
Q Consensus       146 ~~~~~~~~~~--------------------~i-~~~~~~~~~~~l~~~~~d~------------------~v~iwd~~~~  186 (340)
                      ...+......                    .+ ....+.+.+..++.++.++                  .|.-.|.++|
T Consensus       187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG  266 (488)
T cd00216         187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG  266 (488)
T ss_pred             eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence            8776543211                    01 1234444556777776554                  7999999999


Q ss_pred             eeEEEeecCCCC-----ceeeEEEc----cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC
Q 019482          187 VAWTFLTRNSDE-----KIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK  257 (340)
Q Consensus       187 ~~~~~~~~~~~~-----~v~~~~~~----~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~  257 (340)
                      +.+-........     ......+.    -++...  ..++.++.++.+...|.++++.+-......   ..+..+|  .
T Consensus       267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~--~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~  339 (488)
T cd00216         267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV--PAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--G  339 (488)
T ss_pred             CEEEEeeCCCCCCcccccCCCCeEEeccccCCCee--EEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--c
Confidence            988776532210     00111111    123211  125677789999999999999875544321   1233444  2


Q ss_pred             EEEEe------------------eCCCcEEEEeccCceEeecccccccc------cceeeEEEecCCeEEEEEecCCcEE
Q 019482          258 YLAMG------------------SKDGDICVVDVKKMEINHWSKRLHLG------TSIALVEFCPTQRVVLTASKEWGAM  313 (340)
Q Consensus       258 ~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~  313 (340)
                      .++.+                  ..+|.+.-.|+.+++.+-........      .+...-.....+..|+.++.||.++
T Consensus       340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~  419 (488)
T cd00216         340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR  419 (488)
T ss_pred             eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence            33332                  24678889999998876554322000      1111111112456788888888888


Q ss_pred             EEEecCCC
Q 019482          314 ITKLTVPA  321 (340)
Q Consensus       314 iw~~~~~~  321 (340)
                      .++.+...
T Consensus       420 ald~~tG~  427 (488)
T cd00216         420 AFDATTGK  427 (488)
T ss_pred             EEECCCCc
Confidence            77765443

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.33  E-value=0.0016  Score=56.59  Aligned_cols=224  Identities=16%  Similarity=0.152  Sum_probs=118.0

Q ss_pred             eeEEEEcCCCCeEEEE-ecCC----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-------
Q 019482           66 PMTIAVNPSGDDFVCS-TTNG----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------  133 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~-~~d~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  133 (340)
                      +....++|+|+++|.+ +..|    .++++|+.+++........        .....+.|.++++.|+....+       
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--------~~~~~~~W~~d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--------PKFSSVSWSDDGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--------EESEEEEECTTSSEEEEEECSTTTSS-C
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--------cccceEEEeCCCCEEEEEEeCccccccc
Confidence            3467899999998865 3334    6999999998765433221        112349999998876655432       


Q ss_pred             ----CcEEEEeCCCCcee--eccccCcc-c-eeEEEecCCCCeEEEeeC---C-CeEEEEEccCC----eeEEEeecCCC
Q 019482          134 ----GHLRIMHWPSLRII--LDEPKAHK-S-VLDMDFSLDSEFLATTST---D-GSARIWKTEDG----VAWTFLTRNSD  197 (340)
Q Consensus       134 ----g~i~~~d~~~~~~~--~~~~~~~~-~-i~~~~~~~~~~~l~~~~~---d-~~v~iwd~~~~----~~~~~~~~~~~  197 (340)
                          ..|+.|.+.+....  ..+..... . ...+..++|+++++..+.   + ..+.+.++..+    .....+.....
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~  277 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED  277 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred             CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence                23788888765432  22322222 2 567889999998765432   2 45788888764    23334433333


Q ss_pred             CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---EeeeeccCCCeeEEEECCCCCEEEEe-eCCC--cEEEE
Q 019482          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYLAMG-SKDG--DICVV  271 (340)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg--~i~i~  271 (340)
                      +....+...  +..+++. .--....+.|...++.....   ...+..+...+.-..+...+++|+.. ..++  .|+++
T Consensus       278 ~~~~~v~~~--~~~~yi~-Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  278 GVEYYVDHH--GDRLYIL-TNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             S-EEEEEEE--TTEEEEE-E-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEcc--CCEEEEe-eCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence            333444443  3332211 11233457788888887652   22444444433333334444455544 3443  58899


Q ss_pred             eccCceEeecccccccccceeeEEEecCCe
Q 019482          272 DVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      ++..+.....+.... ...|..+...++++
T Consensus       355 ~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  355 DLDDGKESREIPLPE-AGSVSGVSGDFDSD  383 (414)
T ss_dssp             ETT-TEEEEEEESSS-SSEEEEEES-TT-S
T ss_pred             ECCCCcEEeeecCCc-ceEEeccCCCCCCC
Confidence            998333333332222 23466665555554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.33  E-value=0.0015  Score=56.34  Aligned_cols=211  Identities=13%  Similarity=0.155  Sum_probs=106.6

Q ss_pred             EEEcCCCCeEEEEecC----------C-CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEE
Q 019482           69 IAVNPSGDDFVCSTTN----------G-GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (340)
Q Consensus        69 ~~~~~~~~~l~~~~~d----------~-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  137 (340)
                      ++.+|.|--+|....+          . .|+||+..... ...+.-      .. +.+.++.|+.+. .|++...||.++
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~l-l~~i~w------~~-~~iv~~~wt~~e-~LvvV~~dG~v~  104 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKL-LSSIPW------DS-GRIVGMGWTDDE-ELVVVQSDGTVR  104 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCE-eEEEEE------CC-CCEEEEEECCCC-eEEEEEcCCEEE
Confidence            4455555555544333          2 38888876543 333322      12 789999998865 555667899999


Q ss_pred             EEeCCCCceeecccc--Cccce-----eEEEecCCCCeEEEeeCCCeEEEEEccCCe-eEEEeecCCCC--------cee
Q 019482          138 IMHWPSLRIILDEPK--AHKSV-----LDMDFSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNSDE--------KIE  201 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~--~~~~i-----~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~~~--------~v~  201 (340)
                      +||+.. +....+..  ....|     ....+..+|  ++.-..++.+.+.+--... ....+......        ...
T Consensus       105 vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~  181 (410)
T PF04841_consen  105 VYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWT  181 (410)
T ss_pred             EEeCCC-ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccc
Confidence            999863 33111110  01122     222333345  3333334555444322211 11111100000        000


Q ss_pred             e-EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482          202 L-CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (340)
Q Consensus       202 ~-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  280 (340)
                      . ..++.+...     .+....++.+.+.+-...+.    ....+++..+++||+|+++|.-..+|.+.+....-.+...
T Consensus       182 ~i~~l~~~~~~-----~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~  252 (410)
T PF04841_consen  182 VIPLLSSDRVV-----EILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC  252 (410)
T ss_pred             cceEeecCcce-----EEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence            0 112222221     11222234444333322111    1123589999999999999999999999998776555554


Q ss_pred             cccccccccceeeEEEecCCe
Q 019482          281 WSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       281 ~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      .+.... ......+.|.-+..
T Consensus       253 e~~~~~-~~~p~~~~WCG~da  272 (410)
T PF04841_consen  253 EFDTDS-KSPPKQMAWCGNDA  272 (410)
T ss_pred             EeecCc-CCCCcEEEEECCCc
Confidence            443332 34667777776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.32  E-value=0.00048  Score=53.94  Aligned_cols=241  Identities=14%  Similarity=0.074  Sum_probs=134.6

Q ss_pred             eeEEEEcCCC-CeEEEEecCCC-EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEE
Q 019482           66 PMTIAVNPSG-DDFVCSTTNGG-CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRI  138 (340)
Q Consensus        66 v~~~~~~~~~-~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~  138 (340)
                      -..++|+|.. .-++.+-.-|+ ..++|....+...........   |  ---.=.|||||.+|+..-.|     |.|-+
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R---H--fyGHGvfs~dG~~LYATEndfd~~rGViGv  144 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR---H--FYGHGVFSPDGRLLYATENDFDPNRGVIGV  144 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc---e--eecccccCCCCcEEEeecCCCCCCCceEEE
Confidence            3468888854 45566666664 467888877655544332211   1  11123699999998876433     78999


Q ss_pred             EeCCCC-ceeeccccCccceeEEEecCCCCeEEEeeC------------------CCeEEEEEccCCeeEEEeec---CC
Q 019482          139 MHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTST------------------DGSARIWKTEDGVAWTFLTR---NS  196 (340)
Q Consensus       139 ~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------d~~v~iwd~~~~~~~~~~~~---~~  196 (340)
                      ||.+.+ +.+-.+..+.-....+.+.+||+.++.+.-                  .-++.+.|..+|+.+.+...   .+
T Consensus       145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~  224 (366)
T COG3490         145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR  224 (366)
T ss_pred             EecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence            998743 334445555446778999999999887642                  11233444444444333221   12


Q ss_pred             CCceeeEEEccCCCcceEEEEEecC-CcceEEEEECCCCcEEeeeecc-------CCCeeEEEECCCCCEEEEee-CCCc
Q 019482          197 DEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLL-------RKPASVLSISLDGKYLAMGS-KDGD  267 (340)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~-~dg~  267 (340)
                      ...+..++..+||...+- |-.-+- .|.-..+=-...++++..+...       ...|-+++.+.+..+++..+ ..+.
T Consensus       225 ~lSiRHld~g~dgtvwfg-cQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~  303 (366)
T COG3490         225 QLSIRHLDIGRDGTVWFG-CQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR  303 (366)
T ss_pred             hcceeeeeeCCCCcEEEE-EEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence            235777788888774211 111111 1111111112233333322221       24567788877655655554 4556


Q ss_pred             EEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          268 ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       268 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ..+||..++..+......    ....++  +...-++..+.+|.+..+.-.
T Consensus       304 ~vi~da~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s~~  348 (366)
T COG3490         304 AVIWDAATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYSRA  348 (366)
T ss_pred             EEEEEcCCCcEEeccccc----ccccce--eccCceEEecCCceEEecccc
Confidence            889999999987653221    233333  334446677778888887543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.1e-05  Score=65.56  Aligned_cols=157  Identities=12%  Similarity=0.071  Sum_probs=100.7

Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      +++.+-.+.+....+..+...|.+++|+|..+ ++..++.+..|+|.|+++...+..+..+  ..+++++|.-+....  
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~--  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHV--  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcce--
Confidence            66666555555555555666899999999766 7888999999999999999888877644  579999999988663  


Q ss_pred             EEEEecCCcceEEEEECCCCcEE-eeeec--cCCCeeEEE------ECCCCCEEEEeeCCCcEEEEeccCc--eEeeccc
Q 019482          215 FCTVQRGDKALLAVYDISTWNKI-GHKRL--LRKPASVLS------ISLDGKYLAMGSKDGDICVVDVKKM--EINHWSK  283 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~-~~~~~--~~~~i~~~~------~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~  283 (340)
                        +..|...|.|.+||++..+-. ..+..  ...+|..++      ..+.|.+++....+  +..|++...  .....+.
T Consensus       251 --IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vle  326 (463)
T KOG1645|consen  251 --IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLE  326 (463)
T ss_pred             --eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccc
Confidence              677788999999999976522 11111  122333332      22345555555443  666766432  2222222


Q ss_pred             ccccccceeeEEEecCCe
Q 019482          284 RLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~  301 (340)
                      ... .+...+++..+-.+
T Consensus       327 le~-pG~cismqy~~~sn  343 (463)
T KOG1645|consen  327 LEP-PGICISMQYHGVSN  343 (463)
T ss_pred             cCC-CcceeeeeecCccc
Confidence            222 34555666655333

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=0.0014  Score=53.65  Aligned_cols=221  Identities=14%  Similarity=0.047  Sum_probs=126.6

Q ss_pred             EEEEcCCCCeE-EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482           68 TIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (340)
Q Consensus        68 ~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  146 (340)
                      +..|.++...| .+--..+.|.-|+..+++...-.         ..+.+.++..-..+..|+++.  ..+.+++.+++..
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---------~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~   97 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---------SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGK   97 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---------CCCCcccceeecCCCeEEEEc--cccEEEeccCCce
Confidence            34577776644 44445677888887755432211         223334444433444555443  2366777665554


Q ss_pred             eeccccCc-----cceeEEEecCCCCeEEEeeC-----------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          147 ILDEPKAH-----KSVLDMDFSLDSEFLATTST-----------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       147 ~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~-----------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      ...+....     ...+.+...|+|.+.++...           -|.|+.+|. .+..+..+.. +-...+.++||||++
T Consensus        98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~  175 (307)
T COG3386          98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGK  175 (307)
T ss_pred             eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cEEecCceEECCCCC
Confidence            22221111     25678899999987665444           133444443 4444444432 223567899999998


Q ss_pred             cceEEEEEecCCcceEEEEECCC--Cc---E--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-cEEEEeccCceEeecc
Q 019482          211 KPFLFCTVQRGDKALLAVYDIST--WN---K--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWS  282 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~--~~---~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~  282 (340)
                      .+    .++-+..+.|.-|++..  +.   .  ........+..-.++...+|.+.+++..+| .|.+|+.. ++.+..+
T Consensus       176 tl----y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i  250 (307)
T COG3386         176 TL----YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI  250 (307)
T ss_pred             EE----EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE
Confidence            63    35556668888887762  11   1  111222334556677888888886555554 89999988 7777666


Q ss_pred             cccccccceeeEEEe-cCCeEEEEEec
Q 019482          283 KRLHLGTSIALVEFC-PTQRVVLTASK  308 (340)
Q Consensus       283 ~~~~~~~~i~~~~~~-~~~~~l~~~~~  308 (340)
                      ....  ..+++++|- |+.+.|...+.
T Consensus       251 ~lP~--~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         251 KLPV--KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ECCC--CCCccceEeCCCcCEEEEEec
Confidence            5433  468888885 44555444443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.25  E-value=6.2e-05  Score=64.76  Aligned_cols=166  Identities=17%  Similarity=0.116  Sum_probs=88.1

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL  192 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~  192 (340)
                      -.+..+.++|+|+++++ ..||.-.++........     ..+.-..+.|.+.+ .+|+-...++|.|+.--+.+....+
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEE
Confidence            34678999999998888 45788888873332221     12345678899855 4666666889999632222222233


Q ss_pred             ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                      ....  .+..+-.   |..     +... .++.|.+||..+++.+..+...  +|..+.|+++|.+++..+.+ .+.|++
T Consensus       106 ~~~~--~~~~If~---G~L-----L~~~-~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  106 KLPF--SVEKIFG---GNL-----LGVK-SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             --SS---EEEEE----SSS-----EEEE-ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             cCCc--ccceEEc---CcE-----EEEE-CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            3222  2333322   664     3333 3448999999999988777643  38899999999999999865 588877


Q ss_pred             ccCc--------eEeeccccccc-ccceeeEEEecC
Q 019482          273 VKKM--------EINHWSKRLHL-GTSIALVEFCPT  299 (340)
Q Consensus       273 ~~~~--------~~~~~~~~~~~-~~~i~~~~~~~~  299 (340)
                      ....        .....+...|. ...|.+..|..|
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d  207 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED  207 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence            5543        00001111121 357888888766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.24  E-value=3.7e-05  Score=69.83  Aligned_cols=147  Identities=16%  Similarity=0.103  Sum_probs=96.4

Q ss_pred             CCeEEEe-eCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE--EEEEecCCcceEEEEECCCCc-EEeeee
Q 019482          166 SEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTWN-KIGHKR  241 (340)
Q Consensus       166 ~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~-~~~~~~  241 (340)
                      .++|+.- .....|+-.|++.|+.+..+..+...++..  +.|+.+.--+  -..+.|-.++.+..||.|-.. .+....
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            3444433 345789999999999999998766554444  4443221000  004666678899999998643 221111


Q ss_pred             ----ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          242 ----LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       242 ----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                          .......|++-+.+| +||+|+.+|.||+||- .+........+- +.||.+|..+.||++|++.+.. .+.+.+.
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGL-GDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             ccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCC-CCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence                123456777776666 8999999999999994 343333333333 6899999999999998877655 4555554


Q ss_pred             c
Q 019482          318 T  318 (340)
Q Consensus       318 ~  318 (340)
                      .
T Consensus       647 ~  647 (794)
T PF08553_consen  647 L  647 (794)
T ss_pred             e
Confidence            3

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.24  E-value=0.001  Score=55.57  Aligned_cols=182  Identities=10%  Similarity=0.084  Sum_probs=104.3

Q ss_pred             CCeEEEccC----------CCcEEEEeCCCC----ceeec--cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe
Q 019482          124 GSRFAAGGV----------DGHLRIMHWPSL----RIILD--EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV  187 (340)
Q Consensus       124 ~~~l~~~~~----------dg~i~~~d~~~~----~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~  187 (340)
                      ..+|++|..          .|.|.++++...    ..+..  .....++|++++-- ++. |+.+. .+.|.+|++...+
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            356776642          288999999874    12211  12334578887766 344 55444 5899999999887


Q ss_pred             -eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcEEeeee--ccCCCeeEEEECCCCCEEEEee
Q 019482          188 -AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKR--LLRKPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       188 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~  263 (340)
                       ....-.......+.++...  +.+     ++.+.....+.++..+. ...+..+.  .....++++.+-++++.++++.
T Consensus       119 ~l~~~~~~~~~~~i~sl~~~--~~~-----I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D  191 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSLSVF--KNY-----ILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD  191 (321)
T ss_dssp             SEEEEEEE-BSSSEEEEEEE--TTE-----EEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred             cchhhheecceEEEEEEecc--ccE-----EEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc
Confidence             4443332233345555554  444     56666666666664332 22222222  2345578888876767999999


Q ss_pred             CCCcEEEEeccC-------ce-EeecccccccccceeeE---EEecC--C------eEEEEEecCCcEEEE
Q 019482          264 KDGDICVVDVKK-------ME-INHWSKRLHLGTSIALV---EFCPT--Q------RVVLTASKEWGAMIT  315 (340)
Q Consensus       264 ~dg~i~i~d~~~-------~~-~~~~~~~~~~~~~i~~~---~~~~~--~------~~l~~~~~dg~i~iw  315 (340)
                      .+|.+.++....       +. .+......|.+..|+++   ++.|.  +      ..++.++.+|.|.+.
T Consensus       192 ~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  192 KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            999999998763       22 33333445667788888   55551  2      248888899998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.23  E-value=2.6e-05  Score=67.86  Aligned_cols=118  Identities=13%  Similarity=0.088  Sum_probs=88.2

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      |...|.--+++..+++++.|+..|.+++|+-..+........      ...+.+.....+++..++|.|+..|.|.++.+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE------GATGITCVRSVSSVEYLVAAGTASGRVSVFQL  105 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc------CccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence            345566667777899999999999999999877654322211      12355666778888889999999999999988


Q ss_pred             CCCcee---ecc---ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC
Q 019482          142 PSLRII---LDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (340)
Q Consensus       142 ~~~~~~---~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~  185 (340)
                      ......   ...   ..|...|++++|++|+..+.+|...|+|..-.+..
T Consensus       106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            653321   111   12445899999999999999999999999888776

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.15  E-value=0.00066  Score=60.91  Aligned_cols=187  Identities=13%  Similarity=0.081  Sum_probs=103.8

Q ss_pred             CCeeEEEEcCCCCeEEEEe------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----
Q 019482           64 GDPMTIAVNPSGDDFVCST------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----  133 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----  133 (340)
                      ..+...+++|+|+.++...      .|..-.||-...+.....+..        ......-.|+|||+.|.+....    
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--------g~~~t~PsWspDG~~lw~v~dg~~~~  421 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--------GHSLTRPSWSLDADAVWVVVDGNTVV  421 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--------CCCCCCceECCCCCceEEEecCcceE
Confidence            4578899999999887665      244344554332222222211        1235678999998877666422    


Q ss_pred             --------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEE---EEccCCee-E---EEeecCCCC
Q 019482          134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARI---WKTEDGVA-W---TFLTRNSDE  198 (340)
Q Consensus       134 --------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~i---wd~~~~~~-~---~~~~~~~~~  198 (340)
                              +.+.+.+++.++...   .....|..+.|+|||..++... ++.|++   -....|.. +   ..+......
T Consensus       422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~  497 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD  497 (591)
T ss_pred             EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence                    234444544433322   2345799999999999988766 577777   34334431 1   112222333


Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      .+.++.|.+++...    +...+.+..+...++...... .+..  ...++..++=+++  .++....++.+.
T Consensus       498 ~~~~l~W~~~~~L~----V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        498 TAVSLDWRTGDSLV----VGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccccceEecCCEEE----EEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            46889999999831    233344445555555533221 1122  1345666666653  455555666333

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.14  E-value=6.6e-05  Score=65.50  Aligned_cols=201  Identities=10%  Similarity=0.068  Sum_probs=122.6

Q ss_pred             CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      +...|.--+++..+++++.|+.-|.+++|+-..++...... +.+..+.....+++..++|.|+..|.|.++.+..+.+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            33455555667788999999999999999976665433222 24445667778888899999999999999998764432


Q ss_pred             E-----EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc----EEeeeeccCCCeeEEEECCCCCEEE
Q 019482          190 T-----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLA  260 (340)
Q Consensus       190 ~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~  260 (340)
                      .     .....|...|++++|++++..     +++|...|+|.+-.+.+..    ..+.+....+.|-.+... ++.+|+
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k-----~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLV  185 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMK-----LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLV  185 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccE-----EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehH
Confidence            2     122234668999999999998     8899999999988887621    122233334556555543 333333


Q ss_pred             EeeCCCcEEEEeccCceEeeccccccccc-ceeeEEEecC----CeEEEEEecCCcEEEEEecCCC
Q 019482          261 MGSKDGDICVVDVKKMEINHWSKRLHLGT-SIALVEFCPT----QRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       261 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +... . -.+++.+.....+.-.... .+ .-.+.+|-|.    .+-.+.++.= ..|+|..+..+
T Consensus       186 Stl~-r-~~Lc~tE~eti~QIG~k~R-~~~~~~GACF~~g~~~~q~~~IycaRP-G~RlWead~~G  247 (726)
T KOG3621|consen  186 STLT-R-CILCQTEAETITQIGKKPR-KSLIDFGACFFPGQCKAQKPQIYCARP-GLRLWEADFAG  247 (726)
T ss_pred             hhhh-h-hheeecchhHHHHhcCCCc-CCccccceEEeeccccCCCceEEEecC-CCceEEeecce
Confidence            3322 2 3345554433222211111 11 1234556553    2334444443 35788877544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1.9e-05  Score=67.90  Aligned_cols=93  Identities=23%  Similarity=0.200  Sum_probs=77.4

Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCee-EEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      .+..+.|+|.-..     ++....+|.+.+..+. .+.+..+..++.+++ +++|.|||+.|++|-.||+|++.|..++.
T Consensus        22 ~i~~~ewnP~~dL-----iA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   22 NIKRIEWNPKMDL-----IATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ceEEEEEcCccch-----hheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            4788999999886     7888889999999988 777778887777777 99999999999999999999999999988


Q ss_pred             EeecccccccccceeeEEEec
Q 019482          278 INHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       278 ~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      .+....... ...|..+.|.+
T Consensus        96 ~l~~~~~s~-e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLFSV-ETDISKGIWDR  115 (665)
T ss_pred             ceecccccc-ccchheeeccc
Confidence            776642222 56788888864

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.11  E-value=0.0034  Score=51.31  Aligned_cols=205  Identities=14%  Similarity=0.133  Sum_probs=123.6

Q ss_pred             eeEEEEcCCCCeEEEEecC--CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCC
Q 019482           66 PMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~  142 (340)
                      ...++++.||++++...-.  ..|.|-|+...+....+...         .  |.-.-|. .+-|.+-+.||.+.-..+.
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P---------G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP---------G--CWLIYPSGNRGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT---------S--EEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC---------C--EEEEEecCCCceEEEecCCceEEEEEC
Confidence            4457888899988765443  46889999888876655321         1  2222232 2457777889999888887


Q ss_pred             -CCceeecc----ccCccce-eEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE--EeecCC---------CCceeeEEE
Q 019482          143 -SLRIILDE----PKAHKSV-LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLTRNS---------DEKIELCRF  205 (340)
Q Consensus       143 -~~~~~~~~----~~~~~~i-~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~---------~~~v~~~~~  205 (340)
                       .|+...+.    ....+++ ..-++...+..++.-+.+|.|+--|+.......  .+....         .+.-.-+++
T Consensus       166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~  245 (342)
T PF06433_consen  166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY  245 (342)
T ss_dssp             STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred             CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence             44443221    1111222 233444555566667889999999987654321  121100         012345778


Q ss_pred             ccCCCcceEEEEEecCCc-------ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC-EEEEe-eCCCcEEEEeccCc
Q 019482          206 SKDGTKPFLFCTVQRGDK-------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMG-SKDGDICVVDVKKM  276 (340)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~i~d~~~~  276 (340)
                      ++....+|+  +.-.+.+       .+|-++|+.+++.+..+... .++.++..+.+.+ +|++. ..++.|.+||..++
T Consensus       246 ~~~~~rlyv--LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  246 HAASGRLYV--LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             ETTTTEEEE--EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             ccccCeEEE--EecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            877766554  3333333       36889999999988777753 4688999998765 55544 45789999999999


Q ss_pred             eEeecccc
Q 019482          277 EINHWSKR  284 (340)
Q Consensus       277 ~~~~~~~~  284 (340)
                      +.++.+..
T Consensus       323 k~~~~~~~  330 (342)
T PF06433_consen  323 KLVRSIEQ  330 (342)
T ss_dssp             -EEEEE--
T ss_pred             cEEeehhc
Confidence            99887754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.09  E-value=0.0053  Score=52.94  Aligned_cols=139  Identities=11%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             EEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCC
Q 019482          119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (340)
Q Consensus       119 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  198 (340)
                      .++.+....+....++.+.+.+-...+.    ....+++..++.||+++++|.-..+|.+.+...+-.+....+......
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~  260 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS  260 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence            3444555555555556666444322211    223458999999999999999999999999887666666666554445


Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  278 (340)
                      ....+.|.-+..              .+..|.    ..+........   .+.|.-++..++..-.|| +||+.-...+.
T Consensus       261 ~p~~~~WCG~da--------------v~l~~~----~~l~lvg~~~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~  318 (410)
T PF04841_consen  261 PPKQMAWCGNDA--------------VVLSWE----DELLLVGPDGD---SISFWYDGPVILVSEIDG-VRIITSTSHEF  318 (410)
T ss_pred             CCcEEEEECCCc--------------EEEEeC----CEEEEECCCCC---ceEEeccCceEEeccCCc-eEEEeCCceEE
Confidence            566777765543              233331    11111111111   134444444555555566 88887776666


Q ss_pred             eeccc
Q 019482          279 NHWSK  283 (340)
Q Consensus       279 ~~~~~  283 (340)
                      ++.+.
T Consensus       319 l~~Vp  323 (410)
T PF04841_consen  319 LQRVP  323 (410)
T ss_pred             EEECC
Confidence            65543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.03  E-value=0.0034  Score=54.60  Aligned_cols=200  Identities=15%  Similarity=0.089  Sum_probs=107.9

Q ss_pred             eEEEEEecCCCeEEEc-cCC----CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC-----------CeE
Q 019482          115 QKCLSFSVDGSRFAAG-GVD----GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----------GSA  178 (340)
Q Consensus       115 v~~~~~~~~~~~l~~~-~~d----g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------~~v  178 (340)
                      +....++|++++++.+ +..    ..++++|+++++.+....... ....+.|.++++.|+....+           ..|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            3467899999988765 233    359999999997654332221 22339999998877665533           247


Q ss_pred             EEEEccCCeeE--EEeecCCCCc-eeeEEEccCCCcceEEEEEecCCc-ceEEEEECCCC----cEEeeeeccCCCe-eE
Q 019482          179 RIWKTEDGVAW--TFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDISTW----NKIGHKRLLRKPA-SV  249 (340)
Q Consensus       179 ~iwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~----~~~~~~~~~~~~i-~~  249 (340)
                      +.|.+.+....  ..+....... ...+..+++++++++  ....+.+ ..+.+.|+..+    .....+......+ ..
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i--~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFI--SSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEE--EEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEE--EEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            77887665432  3333222222 568889999986443  3444444 78999999875    2222333333333 33


Q ss_pred             EEECCCCCEEEEee---CCCcEEEEeccCceE---eeccccccc-ccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          250 LSISLDGKYLAMGS---KDGDICVVDVKKMEI---NHWSKRLHL-GTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       250 ~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      +... .+.+++...   .++.|...++.....   ...+ ..+. ...+..+... .+.+++....++.-+|.-++..
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l-~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL-IPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE-E--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE-cCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECC
Confidence            3333 444444432   245677777776542   1122 1221 1245555543 3355666666665444444333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.99  E-value=0.006  Score=50.06  Aligned_cols=190  Identities=12%  Similarity=0.004  Sum_probs=107.0

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----C----Cc
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----D----GH  135 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d----g~  135 (340)
                      .+.++..-..+..|++ +..+ +.+++.+.+.....+....  .-......+.+...|+|.+-+....     .    ..
T Consensus        67 ~~~~~~~~d~~g~Lv~-~~~g-~~~~~~~~~~~~t~~~~~~--~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~  142 (307)
T COG3386          67 GFSSGALIDAGGRLIA-CEHG-VRLLDPDTGGKITLLAEPE--DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPT  142 (307)
T ss_pred             CcccceeecCCCeEEE-Eccc-cEEEeccCCceeEEecccc--CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCc
Confidence            3444433333333443 3444 7788876555422221111  0112245567888899876655433     0    11


Q ss_pred             EEEEeCC-CCceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccC------CeeEEEeecCCCCceeeEEEcc
Q 019482          136 LRIMHWP-SLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTED------GVAWTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       136 i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~  207 (340)
                      -.+|-+. .+........+-..-+.++||||++.|..+.. .+.|.-|++..      ++..........+..-.++...
T Consensus       143 G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa  222 (307)
T COG3386         143 GSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA  222 (307)
T ss_pred             ceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence            1344444 44444444443445678999999988777754 47788887752      1111222222345566777888


Q ss_pred             CCCcceEEEEEecCCc-ceEEEEECCCCcEEeeeeccCCCeeEEEEC-CCCCEEEEeeC
Q 019482          208 DGTKPFLFCTVQRGDK-ALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSK  264 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~  264 (340)
                      +|..     -..+..+ +.|..|+.. ++.+..+......+++++|- |+.+.|++.+.
T Consensus       223 dG~l-----w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         223 DGNL-----WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCE-----EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            8874     2233333 389999999 88888888776677778774 45555555443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.95  E-value=1.3e-05  Score=60.33  Aligned_cols=149  Identities=15%  Similarity=0.048  Sum_probs=89.4

Q ss_pred             eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eeccCCC
Q 019482          168 FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKP  246 (340)
Q Consensus       168 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~  246 (340)
                      .+...+.|+.|+-++++..+....-...+.....-+.+   +..     ++.++.++.|.+|.......... .......
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~-----~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~  103 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAK-----LMVGTSDGAVYVFNWNLEGAHSDRVCSGEES  103 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cce-----EEeecccceEEEecCCccchHHHhhhccccc
Confidence            34455678888888876543321111111111111112   222     78889999999998873221111 1111222


Q ss_pred             eeEE-EECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE--ecCCcEEEEEecCCCCC
Q 019482          247 ASVL-SISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA--SKEWGAMITKLTVPADW  323 (340)
Q Consensus       247 i~~~-~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~  323 (340)
                      +.++ .--.++.+.++++.||.|+.|++...+.+.... .|...++..+..+..++.++.+  |.|..++.|++..-...
T Consensus       104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~  182 (238)
T KOG2444|consen  104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDE  182 (238)
T ss_pred             ceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhcc
Confidence            3222 222355688999999999999999888776542 3422567777777777888888  88888999998755443


Q ss_pred             CC
Q 019482          324 KG  325 (340)
Q Consensus       324 ~~  325 (340)
                      .+
T Consensus       183 ~~  184 (238)
T KOG2444|consen  183 SP  184 (238)
T ss_pred             Cc
Confidence            33

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.93  E-value=0.00097  Score=60.98  Aligned_cols=141  Identities=15%  Similarity=0.088  Sum_probs=99.0

Q ss_pred             CCeEEEc-cCCCcEEEEeCCCCceeeccccCccc-eeEEEecCC-------CCeEEEeeCCCeEEEEEccCCe--eEEE-
Q 019482          124 GSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLD-------SEFLATTSTDGSARIWKTEDGV--AWTF-  191 (340)
Q Consensus       124 ~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~-------~~~l~~~~~d~~v~iwd~~~~~--~~~~-  191 (340)
                      .++|+.- .....|+-.|++.|+.+.....+... |..  +.|+       ...-+.|-.+..+..||.|-..  .+.. 
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            3344433 34577999999999998887766543 444  4443       2334566678899999998643  2211 


Q ss_pred             e-ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482          192 L-TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (340)
Q Consensus       192 ~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  270 (340)
                      . .-.......|++-+.+|.      ++.++.+|.|++||--..+....+.+.+.+|..+..+.||++|++.+. ..|.+
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G~------iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlL  643 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDGY------IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLL  643 (794)
T ss_pred             ccccccCCCceEEEecCCce------EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEE
Confidence            1 112334578888888888      799999999999995444444556777899999999999999988764 56777


Q ss_pred             Eec
Q 019482          271 VDV  273 (340)
Q Consensus       271 ~d~  273 (340)
                      ++.
T Consensus       644 i~t  646 (794)
T PF08553_consen  644 IDT  646 (794)
T ss_pred             EEE
Confidence            775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.92  E-value=0.0078  Score=49.09  Aligned_cols=221  Identities=14%  Similarity=0.112  Sum_probs=123.6

Q ss_pred             CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc--
Q 019482           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE--  150 (340)
Q Consensus        73 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~--  150 (340)
                      ..++.|+.|+.+| +.+++...........        +...|..+...|+-+.|++-+ |+.+.++++.........  
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccc
Confidence            3578999999999 9999983322222221        224489999999877666654 599999998764433311  


Q ss_pred             ------------ccCccceeEEE--ecCCCCeEEEeeCCCeEEEEEccCC-----eeEEEeecCCCCceeeEEEccCCCc
Q 019482          151 ------------PKAHKSVLDMD--FSLDSEFLATTSTDGSARIWKTEDG-----VAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       151 ------------~~~~~~i~~~~--~~~~~~~l~~~~~d~~v~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                                  ......+..++  -.+.+...+......+|.+|.....     +..+++.  ....+.+++|.++  .
T Consensus        75 ~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~~--~  150 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLGN--K  150 (275)
T ss_pred             ccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeCC--E
Confidence                        11122344444  1123333333444568999888653     3445554  3356899999843  2


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeeeccC------------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  279 (340)
                           +..+. .....+.|+.++..........            .++..+.. +++.+|++-  |..-.+.|. .|++.
T Consensus       151 -----i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~  220 (275)
T PF00780_consen  151 -----ICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPS  220 (275)
T ss_pred             -----EEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcC
Confidence                 23333 4558888998766543322111            23333333 345566543  333333344 34333


Q ss_pred             ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +.. ...-.....++++.  ..+|+..+.+ .|.||++....
T Consensus       221 r~~-~i~W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~  258 (275)
T PF00780_consen  221 RKS-TIQWSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGE  258 (275)
T ss_pred             ccc-EEEcCCchhEEEEE--CCEEEEECCC-EEEEEECcCCc
Confidence            211 11112356666664  3577777664 59999997665

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.87  E-value=0.0067  Score=50.61  Aligned_cols=230  Identities=11%  Similarity=0.016  Sum_probs=109.5

Q ss_pred             eeEEEEcCCCCeEEEEe-cCC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           66 PMTIAVNPSGDDFVCST-TNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~-~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      .+.=+|.++|+.|+.++ .+|  .+.+.|+.+++..+.....      . .......++|+.+.++.......|+-.|++
T Consensus        38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~------g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~  110 (386)
T PF14583_consen   38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP------G-DNTFGGFLSPDDRALYYVKNGRSLRRVDLD  110 (386)
T ss_dssp             TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred             ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC------C-CCccceEEecCCCeEEEEECCCeEEEEECC
Confidence            33456778897666544 454  5666677766543222111      1 112235667888887665555688999999


Q ss_pred             CCceeeccccCccceeEEEec--CCCCeEEEee---C-------------------CCeEEEEEccCCeeEEEeecCCCC
Q 019482          143 SLRIILDEPKAHKSVLDMDFS--LDSEFLATTS---T-------------------DGSARIWKTEDGVAWTFLTRNSDE  198 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~---~-------------------d~~v~iwd~~~~~~~~~~~~~~~~  198 (340)
                      +.+....+.-...-+-...|.  .|+..++-.-   .                   ...|.--|+++|+....+.  ...
T Consensus       111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~  188 (386)
T PF14583_consen  111 TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTD  188 (386)
T ss_dssp             T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS
T ss_pred             cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCc
Confidence            987654443334434334553  3555544321   1                   1235556777777655554  334


Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcce-EEEEECCCC-cEEeeeecc--CCCeeEEEECCCCCEEEEee-----CCCcEE
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKAL-LAVYDISTW-NKIGHKRLL--RKPASVLSISLDGKYLAMGS-----KDGDIC  269 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~-~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~-----~dg~i~  269 (340)
                      .+..+.|+|....++++|- -+-.+.. -+||-+++. .....+..+  ...+..=-|.|||..|..-+     .+..|.
T Consensus       189 wlgH~~fsP~dp~li~fCH-EGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~  267 (386)
T PF14583_consen  189 WLGHVQFSPTDPTLIMFCH-EGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA  267 (386)
T ss_dssp             -EEEEEEETTEEEEEEEEE--S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred             cccCcccCCCCCCEEEEec-cCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence            6889999998877555442 2333331 345544422 111122211  23344456899998776532     244677


Q ss_pred             EEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      -+|+.+++..... .   ......+--++||++++-=+.|
T Consensus       268 ~~d~~t~~~~~~~-~---~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  268 GYDPDTGERRRLM-E---MPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EE-TTT--EEEEE-E---E-SEEEEEE-TTSSEEEEEE--
T ss_pred             eeCCCCCCceEEE-e---CCceeeeEEcCCCCEEEecCCC
Confidence            7888887654322 1   1234455667899987765554

>smart00320 WD40 WD40 repeats

Probab=97.85  E-value=6.8e-05  Score=39.91  Aligned_cols=36  Identities=19%  Similarity=0.434  Sum_probs=32.0

Q ss_pred             eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEE
Q 019482           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFE   91 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~   91 (340)
                      ...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.0093  Score=47.04  Aligned_cols=189  Identities=13%  Similarity=0.124  Sum_probs=110.4

Q ss_pred             EEEcCCCCeEEEEecC-----CCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----------
Q 019482           69 IAVNPSGDDFVCSTTN-----GGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----------  132 (340)
Q Consensus        69 ~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------  132 (340)
                      =.|||||.+|...-.|     |.|-|||.+..-. ..++.       .|.-....+.|.+||+.++.+..          
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~-------t~GiGpHev~lm~DGrtlvvanGGIethpdfgR  191 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS-------THGIGPHEVTLMADGRTLVVANGGIETHPDFGR  191 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc-------cCCcCcceeEEecCCcEEEEeCCceecccccCc
Confidence            4699999999876544     6899999874321 11111       24445678999999998887642          


Q ss_pred             --------CCcEEEEeCCCCceeeccc----cCccceeEEEecCCCCeEEEeeCCCe-----EEEEEccCCeeEEEeecC
Q 019482          133 --------DGHLRIMHWPSLRIILDEP----KAHKSVLDMDFSLDSEFLATTSTDGS-----ARIWKTEDGVAWTFLTRN  195 (340)
Q Consensus       133 --------dg~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~-----v~iwd~~~~~~~~~~~~~  195 (340)
                              .-.+.+.|..+++.+.+..    .++-.|..++..+||..++.+-..|.     -.+=-...++++.-+...
T Consensus       192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~p  271 (366)
T COG3490         192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLP  271 (366)
T ss_pred             cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCC
Confidence                    1134444544555443322    22347888999988876665543221     112222334444333211


Q ss_pred             C------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          196 S------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       196 ~------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      .      ...|-+++.+.+...+    .+++-..+...+||..++..+......+  ...+.  +...-+++.+.+|.+.
T Consensus       272 ee~~~~~anYigsiA~n~~~glV----~lTSP~GN~~vi~da~tG~vv~~a~l~d--aaGva--~~~~gf~vssg~G~~~  343 (366)
T COG3490         272 EEQTAAFANYIGSIAANRRDGLV----ALTSPRGNRAVIWDAATGAVVSEAALPD--AAGVA--AAKGGFAVSSGQGRII  343 (366)
T ss_pred             HHHHHHHHhhhhheeecccCCeE----EEecCCCCeEEEEEcCCCcEEecccccc--cccce--eccCceEEecCCceEE
Confidence            1      2346677777655532    5666677889999999998764433221  22222  3334456666788888


Q ss_pred             EEe
Q 019482          270 VVD  272 (340)
Q Consensus       270 i~d  272 (340)
                      ++.
T Consensus       344 ~~s  346 (366)
T COG3490         344 FYS  346 (366)
T ss_pred             ecc
Confidence            774

>smart00320 WD40 WD40 repeats

Probab=97.79  E-value=0.00011  Score=39.04  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=32.6

Q ss_pred             cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       235 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                      +++..+..+...+.++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34455667778899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=0.00062  Score=57.85  Aligned_cols=149  Identities=17%  Similarity=0.124  Sum_probs=99.3

Q ss_pred             CCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE--EEEEecCCcceEEEEECCCCcE--Ee
Q 019482          164 LDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTWNK--IG  238 (340)
Q Consensus       164 ~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~--~~  238 (340)
                      .+.++ +.++.....++--|++.|+.+..+..+.+  |.-+.+.|+.+..-+  -..+.|-.++.|.-||.|-...  +.
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~  420 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA  420 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence            34444 44455556788899999999999986544  788888887653221  1134556788899999884322  22


Q ss_pred             eeecc----CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482          239 HKRLL----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (340)
Q Consensus       239 ~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  314 (340)
                      ....+    .....|.+-..+| +|++|+.+|.|++||- .+........+- +.+|..+..+.||++|+..+.. .+.+
T Consensus       421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgL-G~~I~hVdvtadGKwil~Tc~t-yLlL  496 (644)
T KOG2395|consen  421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGL-GDAIKHVDVTADGKWILATCKT-YLLL  496 (644)
T ss_pred             eeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhccccc-CCceeeEEeeccCcEEEEeccc-EEEE
Confidence            22222    1234455544444 8999999999999997 555444444444 7899999999999988877654 4555


Q ss_pred             EEec
Q 019482          315 TKLT  318 (340)
Q Consensus       315 w~~~  318 (340)
                      -+..
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            5554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.76  E-value=0.018  Score=48.26  Aligned_cols=238  Identities=10%  Similarity=0.077  Sum_probs=115.5

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccC-C-------
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D-------  133 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-------  133 (340)
                      ..++|+|.|+|+.++ +...|.|++++ ..+.....+................++++|+   ..+|..... .       
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            468899999987665 46689999999 3333312221111112234567899999994   234433332 1       


Q ss_pred             -CcEEEEeCCCC-------ceee-cccc---CccceeEEEecCCCCeEEEeeCCC-------------eEEEEEccCCee
Q 019482          134 -GHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTSTDG-------------SARIWKTEDGVA  188 (340)
Q Consensus       134 -g~i~~~d~~~~-------~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~~d~-------------~v~iwd~~~~~~  188 (340)
                       ..|.-|.+..+       +.+. ....   .......|.|.|||.+.++.+..+             .|.-.+.. ++.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~  159 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI  159 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence             13444444332       1111 1111   122456799999998766655332             22222321 110


Q ss_pred             -------------EEEeecCCCCceeeEEEccC-CCcceEEEEEecCCc--ceEEEEECCCCc-----------------
Q 019482          189 -------------WTFLTRNSDEKIELCRFSKD-GTKPFLFCTVQRGDK--ALLAVYDISTWN-----------------  235 (340)
Q Consensus       189 -------------~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~d--~~i~i~d~~~~~-----------------  235 (340)
                                   ...+..... ....++|+|. |.. +   ..-.+.+  ..|.+.  ..+.                 
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l-~---~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~  232 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRL-W---AADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPP  232 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEE-E---EEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-
T ss_pred             CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcE-E---EEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCc
Confidence                         011111121 2557899998 542 2   1222222  233322  1111                 


Q ss_pred             ------------EEeeeeccCCCeeEEEECC-------CCCEEEEeeCCCcEEEEeccCceEeecc-c-ccccccceeeE
Q 019482          236 ------------KIGHKRLLRKPASVLSISL-------DGKYLAMGSKDGDICVVDVKKMEINHWS-K-RLHLGTSIALV  294 (340)
Q Consensus       236 ------------~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~-~~~~~~~i~~~  294 (340)
                                  ++..+. +...+..+.|-.       +|.+++..-..+.|....+.....+... . .......+..+
T Consensus       233 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v  311 (331)
T PF07995_consen  233 IGDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV  311 (331)
T ss_dssp             ECTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred             cccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence                        111111 123455555543       4556666665678888888744322111 1 11213479999


Q ss_pred             EEecCCeEEEEEecCCcEE
Q 019482          295 EFCPTQRVVLTASKEWGAM  313 (340)
Q Consensus       295 ~~~~~~~~l~~~~~dg~i~  313 (340)
                      ++.|||.++++.+.+|.|.
T Consensus       312 ~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  312 AQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEETTSEEEEEE-TTTTEE
T ss_pred             EEcCCCeEEEEECCCCeEe
Confidence            9999999999988888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.75  E-value=0.0028  Score=42.54  Aligned_cols=100  Identities=13%  Similarity=0.162  Sum_probs=66.0

Q ss_pred             eeEEEEcC---CC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           66 PMTIAVNP---SG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        66 v~~~~~~~---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      |+++++..   +| +.|++|+.|..|++|+-+.  ....+.        ....|.++.-... ..++.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~--------e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT--------ETDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe--------cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            56666654   33 4899999999999998543  222222        3367777777665 57889999999999985


Q ss_pred             CCCceeeccccCccceeEEEecC---CC-CeEEEeeCCCeEE
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSL---DS-EFLATTSTDGSAR  179 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~d~~v~  179 (340)
                        .+.+.+....+ .+.++.+..   || ..|++|=.+|.|-
T Consensus        71 --~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 --SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             --cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence              34444454333 355555543   33 2588888888764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.71  E-value=0.015  Score=45.92  Aligned_cols=185  Identities=14%  Similarity=0.172  Sum_probs=113.6

Q ss_pred             CCeEEEEEecCCCeEEEccCCC--cEEEEeCCCCceeeccccCcc-ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      .-...+.|..++.++-+.+.-|  .|+.+|+.+++......-... --..++.. +++...-.=.++...+||..+-+.+
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence            3446788877887777776655  699999999986654332221 12234444 2334444457899999999999998


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeC
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK  264 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~  264 (340)
                      .++.-..+  =+.++  .+++.     ++.+.....|.++|..+.+....+....     ..++.+.+- +|...|=.=.
T Consensus       124 ~~~~y~~E--GWGLt--~dg~~-----Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  124 GTFPYPGE--GWGLT--SDGKR-----LIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             EEEE-SSS----EEE--ECSSC-----EEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred             EEEecCCc--ceEEE--cCCCE-----EEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence            88875433  45565  56665     5666667889999999887766554332     245667774 5666665556


Q ss_pred             CCcEEEEeccCceEeeccccc---------c----cccceeeEEEecCCeEEEEEec
Q 019482          265 DGDICVVDVKKMEINHWSKRL---------H----LGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       265 dg~i~i~d~~~~~~~~~~~~~---------~----~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      ...|...|..+|++...+...         .    ...-.+.+|+.|..+.|...|+
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            677888899888877544210         0    0246899999987755555544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10115 protease 2; Provisional

Probab=97.69  E-value=0.044  Score=50.77  Aligned_cols=199  Identities=6%  Similarity=-0.050  Sum_probs=107.8

Q ss_pred             CeEEEEEecCCCeEEEccC-----CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC------CeEEEEE
Q 019482          114 PQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWK  182 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd  182 (340)
                      .+..+.|+||+++|+.+..     ...|++.|+.+++.+........  ..++|.+|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4667889999998876532     23588999988764332222222  459999998876665432      3677888


Q ss_pred             ccCC--eeEEEeecCCCCcee-eEEEccCCCcceEEEEEecCCcceEEEEECC--CCcEEeeeeccCCCeeEEEECCCCC
Q 019482          183 TEDG--VAWTFLTRNSDEKIE-LCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKIGHKRLLRKPASVLSISLDGK  257 (340)
Q Consensus       183 ~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~i~~~~~s~~~~  257 (340)
                      +.++  +....+.. ...... ....+.++++++  .-.....++.+.+++..  .+.....+.........+. +..+.
T Consensus       206 lgt~~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  281 (686)
T PRK10115        206 IGTPASQDELVYEE-KDDTFYVSLHKTTSKHYVV--IHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHR  281 (686)
T ss_pred             CCCChhHCeEEEee-CCCCEEEEEEEcCCCCEEE--EEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCE
Confidence            8777  32333332 222233 333344777543  34555567789999953  3332222222222222222 22333


Q ss_pred             EEEEeeC---CCcEEEEeccC-ceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          258 YLAMGSK---DGDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       258 ~l~~~~~---dg~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      +++....   ...|...++.. ++. ..+........+..+.+. .+.++++...+|.-+++-++..
T Consensus       282 ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~  346 (686)
T PRK10115        282 FYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRK  346 (686)
T ss_pred             EEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCC
Confidence            3333322   22344445442 221 122122113468888887 4467777778888888877653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.67  E-value=0.035  Score=51.61  Aligned_cols=206  Identities=13%  Similarity=0.073  Sum_probs=119.9

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCC-CCCCeEEEEEec----------------CCCeEEEccCCCcEE
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSV----------------DGSRFAAGGVDGHLR  137 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~----------------~~~~l~~~~~dg~i~  137 (340)
                      +..++.++.++.|.-.|..+++...++......... .....+.+.+..                .+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            557777787888999999888877776443211100 001123333321                234788888899999


Q ss_pred             EEeCCCCceeeccccCccce-------------eEEEecC--CCCeEEEeeC----------CCeEEEEEccCCeeEEEe
Q 019482          138 IMHWPSLRIILDEPKAHKSV-------------LDMDFSL--DSEFLATTST----------DGSARIWKTEDGVAWTFL  192 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~i-------------~~~~~~~--~~~~l~~~~~----------d~~v~iwd~~~~~~~~~~  192 (340)
                      -.|.++|+.+..+.. ...+             ..+.-.|  .+..+++|+.          +|.|+-+|.++|+.+-.+
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998865532 1111             1112222  2345666642          688999999999988776


Q ss_pred             ecCCC--------C--------ce-eeEEEccCCCcceEEEE-------------EecCCcceEEEEECCCCcEEeeeec
Q 019482          193 TRNSD--------E--------KI-ELCRFSKDGTKPFLFCT-------------VQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       193 ~~~~~--------~--------~v-~~~~~~~~~~~~~~~~~-------------~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      .....        +        .+ ...+++++...+|+-..             ......+.|.-.|.++++..-.++.
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            52110        0        00 12334444333221100             0011246788889999988766554


Q ss_pred             cCCCee---------EEEECC-CCC---EEEEeeCCCcEEEEeccCceEeec
Q 019482          243 LRKPAS---------VLSISL-DGK---YLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       243 ~~~~i~---------~~~~s~-~~~---~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      ..+.+.         -+.+.. +|+   .++.++.+|.++++|.++++.+..
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            222111         122322 553   788999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.66  E-value=0.03  Score=47.89  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             EEEEcCCCCeEEEEecCCCEEE---EEecCce-eeeeeccccCCCCCCC--CCeEEEEEec-----------CCCeEEEc
Q 019482           68 TIAVNPSGDDFVCSTTNGGCKL---FEVYGGA-TDINLLAKKMPPLQDA--GPQKCLSFSV-----------DGSRFAAG  130 (340)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~i---w~~~~~~-~~~~~~~~~~~~~~~~--~~v~~~~~~~-----------~~~~l~~~  130 (340)
                      .++.+|+++.||.+..+..+.+   |+..... ....+...-...+.+.  ..|+++.|-|           |...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4678899999999988775554   5332111 1111110001111222  4666666543           35689999


Q ss_pred             cCCCcEEEEeCCCCceeeccccCccceeEEEec
Q 019482          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS  163 (340)
Q Consensus       131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~  163 (340)
                      ..+|.|++|. ++|..+....-|.++|..+.+.
T Consensus        86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence            9999999998 4677666666677788877764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.64  E-value=0.0076  Score=40.54  Aligned_cols=100  Identities=18%  Similarity=0.173  Sum_probs=65.0

Q ss_pred             eeEEEecC---CC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482          157 VLDMDFSL---DS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (340)
Q Consensus       157 i~~~~~~~---~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  232 (340)
                      |+++++..   || +.|++|+.|..|++|+-  .+.+.++..  .+.+.++.-...++      ++.+-.+|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e--~~~v~~L~~~~~~~------F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE--TDKVTSLCSLGGGR------FAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec--ccceEEEEEcCCCE------EEEEecCCEEEEEeCc
Confidence            55666554   33 47999999999999984  466666653  34688887777765      5777788899888763


Q ss_pred             CCcEEeeeeccCCCeeEEEECC-C--C-CEEEEeeCCCcEE
Q 019482          233 TWNKIGHKRLLRKPASVLSISL-D--G-KYLAMGSKDGDIC  269 (340)
Q Consensus       233 ~~~~~~~~~~~~~~i~~~~~s~-~--~-~~l~~~~~dg~i~  269 (340)
                      .  .+-..+. +..+.++.+.. +  | ..|++|-.+|.|-
T Consensus        72 ~--RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 Q--RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c--eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2  2222222 23355555433 3  3 4788888888764

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.013  Score=46.45  Aligned_cols=162  Identities=10%  Similarity=0.049  Sum_probs=106.0

Q ss_pred             ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          151 PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      .+.+..+.++.|+|+.+.|++......-.++=..+|+.+.++....-.....+.+..++.+     .++.-.++.+.++.
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f-----vi~dER~~~l~~~~  156 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF-----VIVDERDRALYLFT  156 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE-----EEEehhcceEEEEE
Confidence            3445579999999999988888777777777777899988887544445677888888876     56667788888887


Q ss_pred             CCCCcEEeee----------eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec--cccccc------cccee
Q 019482          231 ISTWNKIGHK----------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW--SKRLHL------GTSIA  292 (340)
Q Consensus       231 ~~~~~~~~~~----------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~------~~~i~  292 (340)
                      +.....+...          ...+...-.++|+|..+.|+.+-+-.=+.||..........  ....+.      -..+.
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            7655322111          11134567899999998888888877788887654321100  000010      13578


Q ss_pred             eEEEecCC-eEEEEEecCCcEEEEEe
Q 019482          293 LVEFCPTQ-RVVLTASKEWGAMITKL  317 (340)
Q Consensus       293 ~~~~~~~~-~~l~~~~~dg~i~iw~~  317 (340)
                      ++.|++.. .+|+-+.+++.+.-.+.
T Consensus       237 gl~~~~~~~~LLVLS~ESr~l~Evd~  262 (316)
T COG3204         237 GLEFNAITNSLLVLSDESRRLLEVDL  262 (316)
T ss_pred             cceecCCCCcEEEEecCCceEEEEec
Confidence            88888744 45555555555544444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.61  E-value=0.036  Score=49.59  Aligned_cols=200  Identities=10%  Similarity=0.053  Sum_probs=115.9

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC---C-CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA---G-PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~---~-~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  150 (340)
                      +..++.++.++.|.-+|..+++...+............   . .-..+++.  +..++.++.|+.+.-+|.++++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            45677777778899999988887766543211000000   0 00112232  346777788999999999999988765


Q ss_pred             ccCcc-ceeEEEecC--CCCeEEEee------CCCeEEEEEccCCeeEEEeecCCCC-----------------------
Q 019482          151 PKAHK-SVLDMDFSL--DSEFLATTS------TDGSARIWKTEDGVAWTFLTRNSDE-----------------------  198 (340)
Q Consensus       151 ~~~~~-~i~~~~~~~--~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~~~~-----------------------  198 (340)
                      ..... .-..+.-+|  .+..++.+.      .+|.|.-+|.++|+.+-.+......                       
T Consensus       147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~  226 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD  226 (527)
T ss_pred             ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence            43211 001111222  123444443      2689999999999887665422110                       


Q ss_pred             -------cee-eEEEccCCCcceEEEEEecC----------C----cceEEEEECCCCcEEeeeeccCCCee--------
Q 019482          199 -------KIE-LCRFSKDGTKPFLFCTVQRG----------D----KALLAVYDISTWNKIGHKRLLRKPAS--------  248 (340)
Q Consensus       199 -------~v~-~~~~~~~~~~~~~~~~~~~~----------~----d~~i~i~d~~~~~~~~~~~~~~~~i~--------  248 (340)
                             .+. .+.+.|....+|   +-++.          .    ...|.-.|+++++..-.++...+.+.        
T Consensus       227 ~~~~gg~~~W~~~s~D~~~~lvy---~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p  303 (527)
T TIGR03075       227 AWKTGGGATWGTGSYDPETNLIY---FGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM  303 (527)
T ss_pred             ccccCCCCccCceeEcCCCCeEE---EeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence                   011 234455444322   22211          1    12788889999998766654332221        


Q ss_pred             -EEEECCCCC---EEEEeeCCCcEEEEeccCceEe
Q 019482          249 -VLSISLDGK---YLAMGSKDGDICVVDVKKMEIN  279 (340)
Q Consensus       249 -~~~~s~~~~---~l~~~~~dg~i~i~d~~~~~~~  279 (340)
                       -+.+..+|+   .++.+..+|.+++.|..+++.+
T Consensus       304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence             123334665   7889999999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.0028  Score=58.63  Aligned_cols=102  Identities=25%  Similarity=0.318  Sum_probs=74.3

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      .+..++.|+..|.+...|+...-..  +..    .....++|.+++|+.+|..++.|-.+|.|.+||+..++..+.+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~----ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~  171 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQ----NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH  171 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch--hhc----CCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence            4557888888898988887654211  111    1124689999999999999999999999999999998877666555


Q ss_pred             cc---ceeEEEecCCCCeEEEeeCCCeEEEEEc
Q 019482          154 HK---SVLDMDFSLDSEFLATTSTDGSARIWKT  183 (340)
Q Consensus       154 ~~---~i~~~~~~~~~~~l~~~~~d~~v~iwd~  183 (340)
                      ..   .+..+.+..++..++++...|.  +|.+
T Consensus       172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            44   3445555556667888877776  5554

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.60  E-value=0.012  Score=51.29  Aligned_cols=154  Identities=11%  Similarity=0.114  Sum_probs=89.7

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC----CCeEEEccCCCcEEEE
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFAAGGVDGHLRIM  139 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~~~  139 (340)
                      .++..++|. ||+.++-..    +++-+   ++.  ++  .....+..-..|..+.|.|-    -.-+++.-....|.+|
T Consensus        20 HPvhGlaWT-DGkqVvLT~----L~l~~---gE~--kf--Gds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTD----LQLHN---GEP--KF--GDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVW   87 (671)
T ss_pred             ccccceEec-CCCEEEEEe----eeeeC---Ccc--cc--CCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence            478899997 777655332    22221   110  00  00111223367899999994    2245555667889999


Q ss_pred             eCCC-----CceeeccccC-cc----ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          140 HWPS-----LRIILDEPKA-HK----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       140 d~~~-----~~~~~~~~~~-~~----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      .+..     ++........ .+    --..+.|+|....|+.-.....-.+++++.............+.|.|.+|.+||
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence            8852     2211111111 01    135678999988887766655556667665443333333456789999999999


Q ss_pred             CcceEEEEEecCCcceEEEEECCC
Q 019482          210 TKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      +++    +++.+..-.-++||-..
T Consensus       168 ~RL----VVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  168 QRL----VVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CEE----EEEeCCeEEEEEecCch
Confidence            985    33444455677888653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0021  Score=54.84  Aligned_cols=144  Identities=15%  Similarity=0.126  Sum_probs=98.9

Q ss_pred             CCCeE-EEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCe--E-----EEeeCCCeEEEEEccCCee-EEEee
Q 019482          123 DGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF--L-----ATTSTDGSARIWKTEDGVA-WTFLT  193 (340)
Q Consensus       123 ~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l-----~~~~~d~~v~iwd~~~~~~-~~~~~  193 (340)
                      +.++| ..+.....++-.|++.|+.+....-+.. |.-+.+.|+.+.  |     +.|-.|..|.-||.+-... +....
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            44444 3445556688889999998877765544 777788886532  2     3455688899999874322 11111


Q ss_pred             c----CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          194 R----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       194 ~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      .    .......|.+-..+|.      ++.++.+|.|++||--..+....+++.+.+|..+..+.+|++|+..+ +..+.
T Consensus       423 q~kqy~~k~nFsc~aTT~sG~------IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLl  495 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESGY------IVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLL  495 (644)
T ss_pred             eccccccccccceeeecCCce------EEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence            1    1123466777777776      79999999999999844444556788889999999999999988775 45676


Q ss_pred             EEecc
Q 019482          270 VVDVK  274 (340)
Q Consensus       270 i~d~~  274 (340)
                      +.++.
T Consensus       496 Li~t~  500 (644)
T KOG2395|consen  496 LIDTL  500 (644)
T ss_pred             EEEEe
Confidence            66653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.45  E-value=0.077  Score=47.55  Aligned_cols=237  Identities=9%  Similarity=0.036  Sum_probs=132.8

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEE-EEEecCCCeEEEcc------CCCcEEEEeCCCCcee
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGG------VDGHLRIMHWPSLRII  147 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~  147 (340)
                      +..++.++.++.+.-.|..+++...+.......   ....+.+ .... ++ .++++.      .+|.|.-+|.++|+.+
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~---~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYK---AGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeccccccc---ccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCcee
Confidence            346777888899999999999877665332110   0001111 1111 34 444443      2688999999998876


Q ss_pred             eccccCcc-------------------------------ce-eEEEecCCCCeEEEeeC-----CC-----------eEE
Q 019482          148 LDEPKAHK-------------------------------SV-LDMDFSLDSEFLATTST-----DG-----------SAR  179 (340)
Q Consensus       148 ~~~~~~~~-------------------------------~i-~~~~~~~~~~~l~~~~~-----d~-----------~v~  179 (340)
                      .++.....                               .+ ..+.+.|...++..+..     ++           +|.
T Consensus       195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~v  274 (527)
T TIGR03075       195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIV  274 (527)
T ss_pred             EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEE
Confidence            55332110                               11 13466665555555441     11           677


Q ss_pred             EEEccCCeeEEEeecCCC--------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec---------
Q 019482          180 IWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---------  242 (340)
Q Consensus       180 iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------  242 (340)
                      -.|+++|+..-.++..+.        ....-+....+|+..  -.++.+..+|.+.+.|.++++.+...+.         
T Consensus       275 Ald~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~--~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~  352 (527)
T TIGR03075       275 ARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPR--KLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATG  352 (527)
T ss_pred             EEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEE--EEEEEeCCCceEEEEECCCCceeccccccCCcccccc
Confidence            778889988776654221        111223333455521  1267889999999999999987521100         


Q ss_pred             ---cC-CC----------------------------eeEEEECCCCCEEEEeeCC-------------------------
Q 019482          243 ---LR-KP----------------------------ASVLSISLDGKYLAMGSKD-------------------------  265 (340)
Q Consensus       243 ---~~-~~----------------------------i~~~~~s~~~~~l~~~~~d-------------------------  265 (340)
                         .. .+                            -..++++|+..++++...+                         
T Consensus       353 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~  432 (527)
T TIGR03075       353 VDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTI  432 (527)
T ss_pred             cCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccccc
Confidence               00 00                            0125666766655543322                         


Q ss_pred             --------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          266 --------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       266 --------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                              |.|.-+|+.+++..-......   +...-...-.+.+++.++.||.++.+|.+..+
T Consensus       433 ~p~~~~~~g~l~AiD~~tGk~~W~~~~~~---p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe  493 (527)
T TIGR03075       433 KPPPDDHMGSLIAWDPITGKIVWEHKEDF---PLWGGVLATAGDLVFYGTLEGYFKAFDAKTGE  493 (527)
T ss_pred             CCCCCCCceeEEEEeCCCCceeeEecCCC---CCCCcceEECCcEEEEECCCCeEEEEECCCCC
Confidence                    457777888887665443211   11111122245577778889999988887665

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.37  E-value=0.051  Score=43.62  Aligned_cols=148  Identities=18%  Similarity=0.132  Sum_probs=89.9

Q ss_pred             CeEEEEEecCCCeEEEcc---CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEE-ccCCeeE
Q 019482          114 PQKCLSFSVDGSRFAAGG---VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK-TEDGVAW  189 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd-~~~~~~~  189 (340)
                      .+...+++++++.++...   ....++++...  ....... ....+..-.|++++...+....+...+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            678899999999777665   23345555433  3222222 223677889999987777666666666664 2333222


Q ss_pred             -EEeecCCC-CceeeEEEccCCCcceEEEEEecCCcceEEEEECC---CC------cEEeeeeccCCCeeEEEECCCCCE
Q 019482          190 -TFLTRNSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TW------NKIGHKRLLRKPASVLSISLDGKY  258 (340)
Q Consensus       190 -~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~---~~------~~~~~~~~~~~~i~~~~~s~~~~~  258 (340)
                       ..+..... ..|..+++||||..+.+  +.....++.|.+--+.   .+      .+..........+..+.|.+++.+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~--v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAV--VVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEE--EEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence             22221111 27999999999998543  4445556777766543   22      111112223457899999999988


Q ss_pred             EEEeeCCC
Q 019482          259 LAMGSKDG  266 (340)
Q Consensus       259 l~~~~~dg  266 (340)
                      ++.+...+
T Consensus       180 ~V~~~~~~  187 (253)
T PF10647_consen  180 VVLGRSAG  187 (253)
T ss_pred             EEEeCCCC
Confidence            87776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.35  E-value=0.05  Score=43.63  Aligned_cols=147  Identities=16%  Similarity=0.070  Sum_probs=86.4

Q ss_pred             ceeEEEecCCCCeEEEee---CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEE-EC
Q 019482          156 SVLDMDFSLDSEFLATTS---TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY-DI  231 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~-d~  231 (340)
                      .+.+.+++++++.++...   ....++++.  .+.......  ....+....|++++..     ......+...+++ +.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~--~g~~l~~PS~d~~g~~-----W~v~~~~~~~~~~~~~   95 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL--TGGSLTRPSWDPDGWV-----WTVDDGSGGVRVVRDS   95 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec--cCCccccccccCCCCE-----EEEEcCCCceEEEEec
Confidence            688999999999877655   233455554  343333332  2236888999999764     2333344444444 33


Q ss_pred             CCCcEE-eeeecc--CCCeeEEEECCCCCEEEEee---CCCcEEEEecc---Cc--eEe-eccccc-ccccceeeEEEec
Q 019482          232 STWNKI-GHKRLL--RKPASVLSISLDGKYLAMGS---KDGDICVVDVK---KM--EIN-HWSKRL-HLGTSIALVEFCP  298 (340)
Q Consensus       232 ~~~~~~-~~~~~~--~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~---~~--~~~-~~~~~~-~~~~~i~~~~~~~  298 (340)
                      ..++.. ......  ...|..+.+||||..++...   .++.|.+--+.   .+  ..+ ...... .....+.+++|.+
T Consensus        96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen   96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            333321 112222  12899999999999888765   34677776543   22  111 001111 1135789999999


Q ss_pred             CCeEEEEEecCCc
Q 019482          299 TQRVVLTASKEWG  311 (340)
Q Consensus       299 ~~~~l~~~~~dg~  311 (340)
                      ++.+++.+...+.
T Consensus       176 ~~~L~V~~~~~~~  188 (253)
T PF10647_consen  176 DSTLVVLGRSAGG  188 (253)
T ss_pred             CCEEEEEeCCCCC
Confidence            9988777666544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.26  E-value=0.00097  Score=37.32  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             CCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce
Q 019482          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI  146 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  146 (340)
                      ...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            467999999999999999999999999998 4544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.0018  Score=59.72  Aligned_cols=101  Identities=9%  Similarity=0.080  Sum_probs=75.2

Q ss_pred             CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC
Q 019482          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR  244 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  244 (340)
                      .+..++.|+..|.+...|....-.......+..++|++++|+.+|..     +..|-.+|.|.+||+..++.++.+..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~-----l~~G~~~G~V~v~D~~~~k~l~~i~e~~  172 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSL-----LLAGLGDGHVTVWDMHRAKILKVITEHG  172 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCce-----eccccCCCcEEEEEccCCcceeeeeecC
Confidence            45678889888999998886532211222344578999999999997     7888889999999999999988888877


Q ss_pred             CCeeEE---EECCCCCEEEEeeCCCcEEEEe
Q 019482          245 KPASVL---SISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       245 ~~i~~~---~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                      .+.+.+   .+..++..++++...|.  +|.
T Consensus       173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             CccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            665554   44456667888777775  454

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.12  E-value=0.18  Score=45.63  Aligned_cols=235  Identities=19%  Similarity=0.192  Sum_probs=113.1

Q ss_pred             ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC-C-----CEEEEEe
Q 019482           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-G-----GCKLFEV   92 (340)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~-----~i~iw~~   92 (340)
                      ..+++.||.......-..++.|+....  ....    ...+. +...-.+++.. ++...++|+.| |     .+..||.
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~----~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTN--EWSS----LAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcC--cEee----cCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence            567888887653334455666654432  1111    00111 12223344444 45777888888 3     5667777


Q ss_pred             cCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc-----EEEEeCCCCceeeccccCccceeEEEe-cCCC
Q 019482           93 YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-----LRIMHWPSLRIILDEPKAHKSVLDMDF-SLDS  166 (340)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~~d~~~~~~~~~~~~~~~~i~~~~~-~~~~  166 (340)
                      ..++... . .    +......-..++ .-+|...++|+.||.     +..||..+.+....-.-.. ....... .-+|
T Consensus       357 ~~~~W~~-~-a----~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g  428 (571)
T KOG4441|consen  357 RTNQWTP-V-A----PMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGG  428 (571)
T ss_pred             CCCceec-c-C----CccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECC
Confidence            7666322 1 1    111111111111 226778888888864     7778877654322111111 2222222 2258


Q ss_pred             CeEEEeeCCC------eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc-----eEEEEECCCCc
Q 019482          167 EFLATTSTDG------SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----LLAVYDISTWN  235 (340)
Q Consensus       167 ~~l~~~~~d~------~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~  235 (340)
                      ...++|+.++      ++..||..+++-...-.......-..++.- ++..     .+.+|.|+     ++..||..+.+
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~i-----YvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKI-----YVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE-CCEE-----EEECCccCCCccceEEEEcCCCCc
Confidence            8888888554      577888776543221111111111122222 2322     34555443     37778887654


Q ss_pred             E--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-----cEEEEeccCce
Q 019482          236 K--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKME  277 (340)
Q Consensus       236 ~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~  277 (340)
                      -  +.........+....  -+++..++|+.||     +|..||..+.+
T Consensus       503 W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  503 WTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             eeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCc
Confidence            3  222222222222222  2567777787765     35566655544

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.11  E-value=0.17  Score=45.89  Aligned_cols=226  Identities=15%  Similarity=0.098  Sum_probs=114.8

Q ss_pred             CCCeEEEEecC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------CcEEEEeC
Q 019482           74 SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHW  141 (340)
Q Consensus        74 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~  141 (340)
                      .+..++.|+.+      ..+..||..++......      .......-.+++.. ++...++|+.|      ..+..||.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a------~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~  356 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA------PMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDP  356 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecC------CCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecC
Confidence            45566777766      36778888776432111      11122233444444 45677888888      35778888


Q ss_pred             CCCceeeccccCccceeEEEe-cCCCCeEEEeeCCC-----eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          142 PSLRIILDEPKAHKSVLDMDF-SLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      .+.+-.. ...-...=..+.. .-+|...++|+.||     ++-.||.++.+--..-.  ............-+..+   
T Consensus       357 ~~~~W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~i---  430 (571)
T KOG4441|consen  357 RTNQWTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKL---  430 (571)
T ss_pred             CCCceec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEE---
Confidence            7766332 1111111111111 22588889999886     46777776543211111  11122222222222222   


Q ss_pred             EEEecCCc------ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCc-----EEEEeccCceEeecc
Q 019482          216 CTVQRGDK------ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGD-----ICVVDVKKMEINHWS  282 (340)
Q Consensus       216 ~~~~~~~d------~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~  282 (340)
                       .+.+|.+      .++..||..+.+  .+..+..........  .-++...+.|+.|+.     |..||..+.+....-
T Consensus       431 -Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  431 -YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             -EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence             2333322      567889987654  332232222222222  236778888887763     777888887655442


Q ss_pred             cccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       283 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      .... ...-..++ .-++...+.|+.||.-++=.+
T Consensus       508 ~m~~-~rs~~g~~-~~~~~ly~vGG~~~~~~l~~v  540 (571)
T KOG4441|consen  508 PMTS-PRSAVGVV-VLGGKLYAVGGFDGNNNLNTV  540 (571)
T ss_pred             cCcc-ccccccEE-EECCEEEEEecccCcccccee
Confidence            2111 11112222 235788888988875444433

>PRK10115 protease 2; Provisional

Probab=97.10  E-value=0.24  Score=46.09  Aligned_cols=195  Identities=10%  Similarity=0.036  Sum_probs=99.6

Q ss_pred             eeEEEEcCCCCeEEEEecC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------C
Q 019482           66 PMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------G  134 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g  134 (340)
                      +..+.++|||++|+.+...     ..|++.|+.++.......       ..  .-..++|.+|++.|+....+      .
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-------~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~  199 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-------DN--VEPSFVWANDSWTFYYVRKHPVTLLPY  199 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-------cC--cceEEEEeeCCCEEEEEEecCCCCCCC
Confidence            6678899999988865433     267788887664221111       11  11469999999866655432      3


Q ss_pred             cEEEEeCCCC--ceeeccccCcccee-EEEecCCCCeEEEee---CCCeEEEEEcc--CCeeEEEeecCCCCceeeEEEc
Q 019482          135 HLRIMHWPSL--RIILDEPKAHKSVL-DMDFSLDSEFLATTS---TDGSARIWKTE--DGVAWTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       135 ~i~~~d~~~~--~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~---~d~~v~iwd~~--~~~~~~~~~~~~~~~v~~~~~~  206 (340)
                      .|+.+++.++  +....+........ .+..+.++++++..+   .++.+.+++..  .++....+.... +....+.  
T Consensus       200 ~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~--  276 (686)
T PRK10115        200 QVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRK-DHEYSLD--  276 (686)
T ss_pred             EEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCC-CCEEEEE--
Confidence            6888888877  32222332222233 233344777765443   34578888843  333222232222 2222222  


Q ss_pred             cCCCcceEEEEEec--CCcceEEEEECCCCcEEeeeecc--CCCeeEEEECCCCCEEEEeeCCCcEEE--EeccCc
Q 019482          207 KDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICV--VDVKKM  276 (340)
Q Consensus       207 ~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i--~d~~~~  276 (340)
                      ..+..++   +.+.  .....|...++........+..+  ...+..+.+. .+.++++...+|.-++  ++..++
T Consensus       277 ~~~~~ly---~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~  348 (686)
T PRK10115        277 HYQHRFY---LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR  348 (686)
T ss_pred             eCCCEEE---EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC
Confidence            2223322   2332  23344555555521111223333  2367777776 3345555666665444  454433

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.09  E-value=0.0021  Score=48.75  Aligned_cols=105  Identities=16%  Similarity=0.210  Sum_probs=65.1

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEE-EEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      +..+++|+.+|.|.+|+.............      ....|.+ +.-..++.+..++..||.|+.|++.-.+.+...-.|
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h  143 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH  143 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhc------ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc
Confidence            457889999999999988632211111110      1122322 222335668889999999999999887776655455


Q ss_pred             c-cceeEEEecCCCCeEEEe--eCCCeEEEEEccC
Q 019482          154 H-KSVLDMDFSLDSEFLATT--STDGSARIWKTED  185 (340)
Q Consensus       154 ~-~~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~  185 (340)
                      . .++.....+..++.++.+  |.|..++.|++..
T Consensus       144 ~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  144 NFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            4 345555555555566665  6666777777653

>PHA02713 hypothetical protein; Provisional

Probab=97.09  E-value=0.17  Score=45.83  Aligned_cols=181  Identities=10%  Similarity=0.031  Sum_probs=86.5

Q ss_pred             CCCeEEEccCC------CcEEEEeCCCCceee--ccccCccceeEEEecCCCCeEEEeeCCC-----eEEEEEccCCeeE
Q 019482          123 DGSRFAAGGVD------GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAW  189 (340)
Q Consensus       123 ~~~~l~~~~~d------g~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~  189 (340)
                      ++...+.|+.+      ..+..||..+.....  .......... ++ .-+++..+.|+.++     ++..||..+.+=.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-LA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-EE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            56677777753      347788887664321  1111111222 22 23577778887654     4888998765321


Q ss_pred             EEeecCCC--CceeeEEEccCCCcceEEEEEecCCc-----------------------ceEEEEECCCCc--EEeeeec
Q 019482          190 TFLTRNSD--EKIELCRFSKDGTKPFLFCTVQRGDK-----------------------ALLAVYDISTWN--KIGHKRL  242 (340)
Q Consensus       190 ~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~d-----------------------~~i~i~d~~~~~--~~~~~~~  242 (340)
                       .+..-..  .....+.  -++..     .+.|+.+                       ..+..||..+.+  .+..+..
T Consensus       381 -~~~~mp~~r~~~~~~~--~~g~I-----YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~  452 (557)
T PHA02713        381 -MLPDMPIALSSYGMCV--LDQYI-----YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT  452 (557)
T ss_pred             -ECCCCCcccccccEEE--ECCEE-----EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence             1111110  0111111  23432     2333322                       357788877643  2222222


Q ss_pred             cCCCeeEEEECCCCCEEEEeeCC------CcEEEEeccC-ceEeecccccccccceeeEEEecCCeEEEEEecCC--cEE
Q 019482          243 LRKPASVLSISLDGKYLAMGSKD------GDICVVDVKK-MEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW--GAM  313 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~  313 (340)
                      ...... + ..-+++..+.|+.+      ..+..||..+ .+-........ .....+++. -+|+..++||.|+  .+-
T Consensus       453 ~r~~~~-~-~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~~~-~~~~iyv~Gg~~~~~~~e  528 (557)
T PHA02713        453 GTIRPG-V-VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHTIL-HDNTIMMLHCYESYMLQD  528 (557)
T ss_pred             ccccCc-E-EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-ccccceeEE-ECCEEEEEeeecceeehh
Confidence            111111 2 22356666777654      2467899887 44332211111 111222222 3788999999888  454


Q ss_pred             EEEe
Q 019482          314 ITKL  317 (340)
Q Consensus       314 iw~~  317 (340)
                      .||.
T Consensus       529 ~yd~  532 (557)
T PHA02713        529 TFNV  532 (557)
T ss_pred             hcCc
Confidence            4544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.09  E-value=0.002  Score=36.08  Aligned_cols=32  Identities=13%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             ccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       288 ~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ...|..++|+|...+||.++.+|.|.+++++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            45799999999999999999999999999943

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.02  Score=53.62  Aligned_cols=147  Identities=10%  Similarity=-0.057  Sum_probs=90.5

Q ss_pred             ceeEEEecCCCCeEEEe--eCCCeEEEEEccCCeeEE-----Eee-----cCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          156 SVLDMDFSLDSEFLATT--STDGSARIWKTEDGVAWT-----FLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~--~~d~~v~iwd~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      .+..+...+|+...++.  +.+-.|..||+++-..-.     -+.     ........++.|.|.-...    .+....|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n----~av~l~d  177 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLN----SAVDLSD  177 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccch----hhhhccc
Confidence            56667777787654433  344589999997522111     010     1112345678888875432    3555668


Q ss_pred             ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe--ecccccccccceeeEEEecCCe
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN--HWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      +.|++..+........-.......++++|+|.|+.+++|-..|.+.-|...-....  ....... ...|.++.|-....
T Consensus       178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQE  256 (1405)
T ss_pred             cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEeccee
Confidence            88888776644332222233456899999999999999999999998875433211  1111111 35799999987777


Q ss_pred             EEEEEe
Q 019482          302 VVLTAS  307 (340)
Q Consensus       302 ~l~~~~  307 (340)
                      ++++-+
T Consensus       257 flvvy~  262 (1405)
T KOG3630|consen  257 FLVVYG  262 (1405)
T ss_pred             EEEEec
Confidence            666543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.03  E-value=0.096  Score=40.32  Aligned_cols=145  Identities=17%  Similarity=0.093  Sum_probs=86.2

Q ss_pred             ceeEEEecCCCCeEEEeeCC---------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482          156 SVLDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (340)
                      ..+.-..+|+|++++-.-.|         |.++.|-.. ++ +..+. ..-...+.++|+.+.+.+    -...+.+.+|
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~-v~~i~-~~v~IsNgl~Wd~d~K~f----Y~iDsln~~V  182 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQ-VELIW-NCVGISNGLAWDSDAKKF----YYIDSLNYEV  182 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccC-CC-ceeee-hhccCCccccccccCcEE----EEEccCceEE
Confidence            56777889999985433222         334444332 11 11111 111234678899887764    2555667788


Q ss_pred             EEEE--CCCCcE-----Eeeeecc---C-CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482          227 AVYD--ISTWNK-----IGHKRLL---R-KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (340)
Q Consensus       227 ~i~d--~~~~~~-----~~~~~~~---~-~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  295 (340)
                      .-||  ..+|..     +..++..   . -..-.++..-+|++.++.-..++|...|..+++.+..+...  ...|++++
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitscc  260 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCC  260 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEE
Confidence            7777  444432     2122110   1 11234566678888888888899999999999999887654  35899999


Q ss_pred             EecC-Ce-EEEEEecC
Q 019482          296 FCPT-QR-VVLTASKE  309 (340)
Q Consensus       296 ~~~~-~~-~l~~~~~d  309 (340)
                      |--. -. +.+++..+
T Consensus       261 FgGkn~d~~yvT~aa~  276 (310)
T KOG4499|consen  261 FGGKNLDILYVTTAAK  276 (310)
T ss_pred             ecCCCccEEEEEehhc
Confidence            9643 23 34444443

>PHA02713 hypothetical protein; Provisional

Probab=97.02  E-value=0.046  Score=49.42  Aligned_cols=189  Identities=16%  Similarity=0.129  Sum_probs=93.3

Q ss_pred             CCCeEEEEecC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-----cEEEEeCC
Q 019482           74 SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWP  142 (340)
Q Consensus        74 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~  142 (340)
                      ++..++.|+.+      ..+..||..++...  ..    .+......-.+++ .-+++..+.|+.++     .+..||..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~--~~----~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~  375 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV--EL----PPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMG  375 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEe--eC----CCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECC
Confidence            56666777753      24677887766431  11    1111111111222 23677777787654     48889987


Q ss_pred             CCceee--ccccCccceeEEEecCCCCeEEEeeCCC-----------------------eEEEEEccCCeeEEEeecCCC
Q 019482          143 SLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDG-----------------------SARIWKTEDGVAWTFLTRNSD  197 (340)
Q Consensus       143 ~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------------------~v~iwd~~~~~~~~~~~~~~~  197 (340)
                      +.+-..  .+.........+.  -+++..+.|+.++                       ++..||.++.+=. .+..-..
T Consensus       376 ~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~-~v~~m~~  452 (557)
T PHA02713        376 DDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE-TLPNFWT  452 (557)
T ss_pred             CCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe-ecCCCCc
Confidence            654332  1211111222222  2577777777542                       4677887665321 1111111


Q ss_pred             CceeeEEEccCCCcceEEEEEecCCc------ceEEEEECCC---CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC--
Q 019482          198 EKIELCRFSKDGTKPFLFCTVQRGDK------ALLAVYDIST---WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--  266 (340)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--  266 (340)
                      .........-+++. +    +.|+.+      ..+..||..+   +..+..+.........+.+  +|+..++|+.++  
T Consensus       453 ~r~~~~~~~~~~~I-Y----v~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~  525 (557)
T PHA02713        453 GTIRPGVVSHKDDI-Y----VVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYM  525 (557)
T ss_pred             ccccCcEEEECCEE-E----EEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeeccee
Confidence            11111111223332 2    233322      3467899886   3344333333333333333  778888998888  


Q ss_pred             cEEEEeccCceEe
Q 019482          267 DICVVDVKKMEIN  279 (340)
Q Consensus       267 ~i~i~d~~~~~~~  279 (340)
                      .+-.||..+.+-.
T Consensus       526 ~~e~yd~~~~~W~  538 (557)
T PHA02713        526 LQDTFNVYTYEWN  538 (557)
T ss_pred             ehhhcCccccccc
Confidence            6777787776654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.00  E-value=0.016  Score=54.31  Aligned_cols=148  Identities=9%  Similarity=-0.047  Sum_probs=92.5

Q ss_pred             CCeeEEEEcCCCCeEEEE--ecCCCEEEEEecCceeeeee----ccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcE
Q 019482           64 GDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINL----LAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHL  136 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i  136 (340)
                      -++..+...+|+...++.  +.+-.|..||+..-......    .......+.......++.|+|.-. ..+....|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            345566666777654433  33347888998764332211    111111222345567899998533 45667789999


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec---CCCCceeeEEEccCCCcc
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~  212 (340)
                      ++..+................++++|+|.|+.++.|-..|++.-|... .+....+..   .....|.++.|-.....+
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence            998776544333333445578999999999999999999999988754 333333321   223578999998776643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.00  E-value=0.13  Score=41.14  Aligned_cols=163  Identities=9%  Similarity=0.034  Sum_probs=103.4

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      +-...+.++.|+|+.+.|++......-.|+=-..++....+...      .-.....+.|..++++.++--++..+.++.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~------g~~DpE~Ieyig~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT------GFSDPETIEYIGGNQFVIVDERDRALYLFT  156 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc------ccCChhHeEEecCCEEEEEehhcceEEEEE
Confidence            44556999999999999988887776666655556655544221      223445678888888877777788888887


Q ss_pred             CCCCceeec----------cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe---ecC------CCCcee
Q 019482          141 WPSLRIILD----------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRN------SDEKIE  201 (340)
Q Consensus       141 ~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~------~~~~v~  201 (340)
                      +........          ..........++|.|....|..+-.-.-+.||...........   ...      .-..+.
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            765432211          1112346789999998888888777677777776533211110   000      012467


Q ss_pred             eEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      ++.|.+....+    ++.+..++.+.-.|...
T Consensus       237 gl~~~~~~~~L----LVLS~ESr~l~Evd~~G  264 (316)
T COG3204         237 GLEFNAITNSL----LVLSDESRRLLEVDLSG  264 (316)
T ss_pred             cceecCCCCcE----EEEecCCceEEEEecCC
Confidence            78888766553    55666677777777653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.97  E-value=0.15  Score=41.73  Aligned_cols=230  Identities=16%  Similarity=0.147  Sum_probs=104.9

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-C
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-L  144 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~  144 (340)
                      .+++.|.. ...++ ++..+ +.+...+.++.-..+....    .-.+....+....++..+++ +..|.|  |...+ +
T Consensus        64 l~~I~f~~-~~g~i-vG~~g-~ll~T~DgG~tW~~v~l~~----~lpgs~~~i~~l~~~~~~l~-~~~G~i--y~T~DgG  133 (302)
T PF14870_consen   64 LNSISFDG-NEGWI-VGEPG-LLLHTTDGGKTWERVPLSS----KLPGSPFGITALGDGSAELA-GDRGAI--YRTTDGG  133 (302)
T ss_dssp             EEEEEEET-TEEEE-EEETT-EEEEESSTTSS-EE----T----T-SS-EEEEEEEETTEEEEE-ETT--E--EEESSTT
T ss_pred             EEEEEecC-CceEE-EcCCc-eEEEecCCCCCcEEeecCC----CCCCCeeEEEEcCCCcEEEE-cCCCcE--EEeCCCC
Confidence            56777764 33344 44555 5455545444333321110    01123344444444433333 344544  33332 2


Q ss_pred             ce-eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          145 RI-ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       145 ~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      +. ..........+..+.-++||+++++++.-....-||.-.. .-..........+..+.|.|++..      ......
T Consensus       134 ~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~l------w~~~~G  206 (302)
T PF14870_consen  134 KTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNL------WMLARG  206 (302)
T ss_dssp             SSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-E------EEEETT
T ss_pred             CCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCE------EEEeCC
Confidence            21 1222334457888889999999988876666667775322 122222234567999999999873      334477


Q ss_pred             ceEEEEEC-CCCcEEee----eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc-cccccceeeEEEe
Q 019482          224 ALLAVYDI-STWNKIGH----KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVEFC  297 (340)
Q Consensus       224 ~~i~i~d~-~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~~~  297 (340)
                      +.|+.=+. ...+.-..    .......+..++|.+++...++|+. |.+ +.....++.=+.... .........+.|.
T Consensus       207 g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~  284 (302)
T PF14870_consen  207 GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFV  284 (302)
T ss_dssp             TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEE
T ss_pred             cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEc
Confidence            88888772 22221111    1122334788999998877776654 433 333444443222211 1113458889998


Q ss_pred             cCCeEEEEEecCCcEEEE
Q 019482          298 PTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw  315 (340)
                      ++.+-++.| .+|.+.=|
T Consensus       285 ~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  285 NPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             ETTEEEEE--STTEEEEE
T ss_pred             CCCceEEEC-CCcEEEEe
Confidence            776656655 56665433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.96  E-value=0.14  Score=41.18  Aligned_cols=226  Identities=14%  Similarity=0.118  Sum_probs=124.1

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCc-----eeeeeeccccCCCCCCCCCeEEEEEecCCC------------eE
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG-----ATDINLLAKKMPPLQDAGPQKCLSFSVDGS------------RF  127 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------~l  127 (340)
                      ..+.|+++|.+..-++....+...+||....     ....................+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            3678999999988888888889999998721     111111110001111234667777775332            35


Q ss_pred             EEccCCCcEEEEeCCCCce-----eeccccC-cc-ceeEEEecC--CCCeEEEee-CCCeEEEEEccCCeeEEEeecCCC
Q 019482          128 AAGGVDGHLRIMHWPSLRI-----ILDEPKA-HK-SVLDMDFSL--DSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSD  197 (340)
Q Consensus       128 ~~~~~dg~i~~~d~~~~~~-----~~~~~~~-~~-~i~~~~~~~--~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~  197 (340)
                      +.+++||+|.-|...-...     ...+... .. --..+++..  .+.+|..+. ..++|.+||-.=.+. . +.....
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~-~-~~g~F~  181 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP-P-LPGSFI  181 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc-c-CCCCcc
Confidence            6778999999998532211     1112111 12 234455543  355665554 568899988542221 1 111000


Q ss_pred             C-------------------ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC--CCeeEEEECC--
Q 019482          198 E-------------------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISL--  254 (340)
Q Consensus       198 ~-------------------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~--  254 (340)
                      .                   .|+-..-.++...     -+.+..-+.|.+||+. ++.++.+....  ..-+.|+..|  
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d-----~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRND-----EVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccc-----cccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence            0                   0111111222211     2344455789999987 45555543221  2345666655  


Q ss_pred             ----CCCEEEEeeCCCcEEEEeccCceEeeccccccc----ccceeeEEEec
Q 019482          255 ----DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL----GTSIALVEFCP  298 (340)
Q Consensus       255 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~  298 (340)
                          .|.+|+---.||+|..||..+++.+-.+.....    ...++.++|..
T Consensus       256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             hCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence                456666656799999999998886655543321    13467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.93  E-value=0.0018  Score=58.76  Aligned_cols=254  Identities=15%  Similarity=0.104  Sum_probs=132.1

Q ss_pred             EecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecC--ceeeeeeccccCCCCCCCCCeEEEEEec---CCCeEEEccC
Q 019482           59 FDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGGV  132 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~  132 (340)
                      +++..+.|-.++|-. +-..++  ..-|.+.||+++-  ++....+......+  ....+.-+.|.|   +.-++..+..
T Consensus       128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p--~gs~~~~V~wcp~~~~~~~ic~~~~  203 (1283)
T KOG1916|consen  128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP--YGSDPQLVSWCPIAVNKVYICYGLK  203 (1283)
T ss_pred             HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc--CCCCcceeeecccccccceeeeccC
Confidence            456667777787743 222222  2236788999864  33222222211111  122334455544   6678888888


Q ss_pred             CCcEEEEeCCCCceeeccccCccceeEE-----------EecCCCCeEEEeeCCCeEEEEEcc-----CCeeEEEeecCC
Q 019482          133 DGHLRIMHWPSLRIILDEPKAHKSVLDM-----------DFSLDSEFLATTSTDGSARIWKTE-----DGVAWTFLTRNS  196 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~-----------~~~~~~~~l~~~~~d~~v~iwd~~-----~~~~~~~~~~~~  196 (340)
                      ++.+++..+.+... ..+..|...+..+           ..+|||..++.+..||.++.|.+.     ...++...+.+.
T Consensus       204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence            99999988765433 2233343333332           268999999999999998888753     334445555444


Q ss_pred             CCceeeEEEccCCCcc-----eEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCE------------E
Q 019482          197 DEKIELCRFSKDGTKP-----FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY------------L  259 (340)
Q Consensus       197 ~~~v~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~------------l  259 (340)
                      ..+-.|.-|+.+....     ..+.+.+...+..+++|....++++  +......+..+. -++|+.            +
T Consensus       283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~  359 (1283)
T KOG1916|consen  283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRL  359 (1283)
T ss_pred             CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHH
Confidence            3333333344332210     1222455556778999998888776  222223344444 233332            2


Q ss_pred             EEeeCCCcEEEEeccCceEeecccccccccceeeEEE--ec---CCeEEEEEec-CCcEEEEEecCCC
Q 019482          260 AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF--CP---TQRVVLTASK-EWGAMITKLTVPA  321 (340)
Q Consensus       260 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~---~~~~l~~~~~-dg~i~iw~~~~~~  321 (340)
                      +.-+-++.|.+|.-+....... ...|..-+|.+..|  ||   +...+++|+. ...+.+|-.....
T Consensus       360 v~r~v~~~i~~~qn~~a~~~~v-s~~~~~hpV~S~i~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~~  426 (1283)
T KOG1916|consen  360 VSRSVDGTIKIWQNRKAQPLVV-SRPHDGHPVLSAIFVTSPERPDHIELITGGPLNRELKIWVSAGEE  426 (1283)
T ss_pred             HHhhhHHHHHHhhcchhhhhhh-hhhhhcceeccccccccCCCccccccccCCcchhhhhhhhhcccc
Confidence            2345577788885443222211 12232335554333  22   2234445443 3446666554433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=96.91  E-value=0.39  Score=45.40  Aligned_cols=173  Identities=13%  Similarity=0.190  Sum_probs=100.3

Q ss_pred             CCCCceeEEeeee---ecCC-CccEEEEcCCCCcccCCCceEEEE------eCC---CCCCcccCCeeeEEEecC---CC
Q 019482            1 MEGGGTVTCGSWI---KRPE-NVNLVVLGKSSRASSSPSVLEIFS------FDP---KTTSVYTSPLVTYVFDES---EG   64 (340)
Q Consensus         1 ~~~~~~v~~~~w~---~~~~-~~~~~~~g~~~~~~~~~~~i~i~~------~~~---~~~~~~~~~~~~~~~~~h---~~   64 (340)
                      ++.+.||..+.|.   ...+ ...+++       .-....+.|+.      +..   ....+  .+.+...+..+   ..
T Consensus        76 i~~~~PI~qI~fa~~~~~~~~~~~~l~-------Vrt~~st~I~~p~~~~~~~~~~~~~s~i--~~~~l~~i~~~~tgg~  146 (765)
T PF10214_consen   76 IDDGSPIKQIKFATLSESFDEKSRWLA-------VRTETSTTILRPEYHRVISSIRSRPSRI--DPNPLLTISSSDTGGF  146 (765)
T ss_pred             cCCCCCeeEEEecccccccCCcCcEEE-------EEcCCEEEEEEcccccccccccCCcccc--ccceeEEechhhcCCC
Confidence            3567899999998   3211 123455       33445577776      211   11122  22223333322   23


Q ss_pred             CeeEEEEcC-CCCeEEEEecCCCEEEEEecCcee----eeeeccccCCC----CCCCCCeEEEEEecCCCeEEEccCCCc
Q 019482           65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGAT----DINLLAKKMPP----LQDAGPQKCLSFSVDGSRFAAGGVDGH  135 (340)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~  135 (340)
                      +...++|+| +...||.....|...||++.....    ...........    ......-..+.|.++.+.|+.++. ..
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~  225 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SK  225 (765)
T ss_pred             ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-Cc
Confidence            577899999 556899999999999999922111    11111111111    112244557889888888887765 56


Q ss_pred             EEEEeCCCCceee--ccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccC
Q 019482          136 LRIMHWPSLRIIL--DEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTED  185 (340)
Q Consensus       136 i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~  185 (340)
                      +.++|+++.....  ........|.++.-+|.  +..|+-.  ...|...++..
T Consensus       226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            8999998776532  12223357999998886  3333333  25788888776

These proteins are found in fungi.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.79  E-value=0.19  Score=39.85  Aligned_cols=190  Identities=11%  Similarity=0.002  Sum_probs=119.3

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE-
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-  191 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-  191 (340)
                      .....++-.|||..-+++...+.|--.|..+++....-.+....-..+..-|||..-++-+.. .|.-.|-++.+...- 
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~  140 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP  140 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence            445678888999988898888888888999988776555555566788899998876664433 455566555443221 


Q ss_pred             ee-cCCCCceeeEEEccCCCcceEEEEEecC--C-------cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEE
Q 019482          192 LT-RNSDEKIELCRFSKDGTKPFLFCTVQRG--D-------KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (340)
Q Consensus       192 ~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~-------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  261 (340)
                      +. .+.........|.+.|...     +++.  .       .+.|++|+...          ...-..++..|||..-++
T Consensus       141 lp~~~a~~nlet~vfD~~G~lW-----Ft~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwya  205 (353)
T COG4257         141 LPLEHADANLETAVFDPWGNLW-----FTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYA  205 (353)
T ss_pred             cccccCCCcccceeeCCCccEE-----EeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEE
Confidence            11 2233457788899999852     2222  1       12344443332          234567888999998888


Q ss_pred             eeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          262 GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       262 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .-.++.|-..|..++..............-+.+--+|.|+.-++....+.+.-++-.
T Consensus       206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs  262 (353)
T COG4257         206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS  262 (353)
T ss_pred             eccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcc
Confidence            777788888887776432221111111234555556778877776666666655543

>PRK13684 Ycf48-like protein; Provisional

Probab=96.77  E-value=0.26  Score=41.41  Aligned_cols=153  Identities=15%  Similarity=0.100  Sum_probs=85.4

Q ss_pred             ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      ...+..+.+.|++.+++++. .|.+..-.-..++............++.+.+.++++.      +..+..+.+++=..+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~------~~vg~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNL------WMLARGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCE------EEEecCCEEEEccCCC
Confidence            34788999999887776665 4655432112233333444444567899999999883      3445566665323343


Q ss_pred             CcEEeeeec----cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc-cccccceeeEEEecCCeEEEEEec
Q 019482          234 WNKIGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       234 ~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      +..-.....    ....+..+.+.|++..++++ .+|.+. .....++.-..... .........+.|..+++.++ .+.
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~  321 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQ  321 (334)
T ss_pred             CCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECC
Confidence            332111111    12357788899988766655 566554 33444433222211 11123577888877766655 446


Q ss_pred             CCcEEEEE
Q 019482          309 EWGAMITK  316 (340)
Q Consensus       309 dg~i~iw~  316 (340)
                      .|.|.-++
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            67776654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.75  E-value=0.11  Score=46.80  Aligned_cols=114  Identities=11%  Similarity=-0.034  Sum_probs=75.4

Q ss_pred             eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEEC--CCCCEEEEeeCCCcEEEEecc--
Q 019482          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSIS--LDGKYLAMGSKDGDICVVDVK--  274 (340)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s--~~~~~l~~~~~dg~i~i~d~~--  274 (340)
                      +.-+.-+.-++.     .+.......+.|||.+.+....... .....|..+.|.  |+|+.+++.+..+.|.+|--.  
T Consensus        32 ~~li~gss~~k~-----a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   32 PSLISGSSIKKI-----AVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             cceEeecccCcE-----EEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence            444545555553     3445567789999999887554433 346789999985  689999998899999998542  


Q ss_pred             ---C----ceEeecc-cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          275 ---K----MEINHWS-KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       275 ---~----~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                         .    ..+++.+ ...+...+|.+..|.++|.+++.+|  +.+.|++-..+
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~~~  158 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKWLD  158 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCCcC
Confidence               1    1122222 1233346899999999998777664  44777765444

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=96.73  E-value=0.31  Score=44.06  Aligned_cols=184  Identities=8%  Similarity=-0.029  Sum_probs=85.2

Q ss_pred             cCCCeEEEccCCC------cEEEEeCCCCceeec--cccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCee
Q 019482          122 VDGSRFAAGGVDG------HLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVA  188 (340)
Q Consensus       122 ~~~~~l~~~~~dg------~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~  188 (340)
                      .++..++.|+.++      .+..||..+.+....  ..........+.  -+++.++.|+.+     ..+..||..+.+-
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3555667776542      577888876654321  111111222222  257777788765     3577788776532


Q ss_pred             EEEeec-CCCCceeeEEEccCCCcceEEEEEecCC--c----ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEE
Q 019482          189 WTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGD--K----ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYL  259 (340)
Q Consensus       189 ~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d----~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l  259 (340)
                      . .... .....-.+++ .-++. +    .+.||.  +    ..+..||..+.+  .+......... .++ ...+++..
T Consensus       371 ~-~~~~lp~~r~~~~~~-~~~~~-i----Yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iy  441 (534)
T PHA03098        371 R-EEPPLIFPRYNPCVV-NVNNL-I----YVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIY  441 (534)
T ss_pred             e-eCCCcCcCCccceEE-EECCE-E----EEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEE
Confidence            2 1111 0110011122 12333 2    233332  1    468889987643  22211111111 122 22356666


Q ss_pred             EEeeCC--------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-----CcEEEEEec
Q 019482          260 AMGSKD--------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-----WGAMITKLT  318 (340)
Q Consensus       260 ~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iw~~~  318 (340)
                      +.|+.+        ..+.+||..+.+-............. ++ ...+++.++.||.+     ..+.++|..
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~  511 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SL-CIFNNKIYVVGGDKYEYYINEIEVYDDK  511 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eE-EEECCEEEEEcCCcCCcccceeEEEeCC
Confidence            777643        23888998876543322111101111 12 22367878888765     345666544

>PRK13684 Ycf48-like protein; Provisional

Probab=96.70  E-value=0.3  Score=41.07  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             CCCeEEEEEecCCCeEEEccCCCcEEEE-eCCCCc-eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          112 AGPQKCLSFSVDGSRFAAGGVDGHLRIM-HWPSLR-IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~-d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      .+.+.++.+.|++.+++++. .|.+..- + ..++ -..........+.++.+.++++.++++. .|.+++=..+.+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCcc
Confidence            45788999999987766654 5654432 2 1222 1111222334789999999988777664 576653233444433


Q ss_pred             EEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEee
Q 019482          190 TFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       190 ~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~  263 (340)
                      ......   ....+..+.+.|++.      +...+.++.+.. ....++.-...   .........+.|..+++.+++| 
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~------~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-  320 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGE------IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-  320 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCC------EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-
Confidence            322211   123477889998877      455566675543 33433322222   1222357777777766666655 


Q ss_pred             CCCcEEEEe
Q 019482          264 KDGDICVVD  272 (340)
Q Consensus       264 ~dg~i~i~d  272 (340)
                      ..|.|--|+
T Consensus       321 ~~G~il~~~  329 (334)
T PRK13684        321 QRGVLLRYV  329 (334)
T ss_pred             CCceEEEec
Confidence            567776664

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.63  E-value=0.18  Score=44.40  Aligned_cols=121  Identities=6%  Similarity=0.002  Sum_probs=70.0

Q ss_pred             CCCCeeEEEEcCCC----CeEEEEecCCCEEEEEecCc-----eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482           62 SEGDPMTIAVNPSG----DDFVCSTTNGGCKLFEVYGG-----ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        62 h~~~v~~~~~~~~~----~~l~~~~~d~~i~iw~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  132 (340)
                      .-+.|..+.|.|-+    ..|++......|.||.+...     +.......+...+++  --...+.|+|....|++-..
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p--vLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP--VLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcc--cCCCcccccCCCceEEEEec
Confidence            34559999999853    34555566677999998632     111111111111111  11245789998887766554


Q ss_pred             CCcEEEEeCCCC-ceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEcc
Q 019482          133 DGHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTE  184 (340)
Q Consensus       133 dg~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~  184 (340)
                      ...-.++++... ..+..-....+-|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            443345555432 223222355678999999999998776532 3356788743

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.60  E-value=0.11  Score=46.86  Aligned_cols=120  Identities=13%  Similarity=0.204  Sum_probs=76.3

Q ss_pred             eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCC
Q 019482           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d  133 (340)
                      ..++......+.-+.-+.-++.-++-+....+.|||...+......      .+...+.|.++.|..  +++.+++.+..
T Consensus        22 t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------~f~~~~~I~dLDWtst~d~qsiLaVGf~   95 (631)
T PF12234_consen   22 TSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------SFSEDDPIRDLDWTSTPDGQSILAVGFP   95 (631)
T ss_pred             EEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------eecCCCceeeceeeecCCCCEEEEEEcC
Confidence            3444444455666666655554444444458999999887643222      123568999999954  88888888889


Q ss_pred             CcEEEEeCC-----C----Cceeec--cccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEc
Q 019482          134 GHLRIMHWP-----S----LRIILD--EPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (340)
Q Consensus       134 g~i~~~d~~-----~----~~~~~~--~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~  183 (340)
                      ..|.+|.-.     .    ...+..  +..+. .+|.+..|.++|.+++.+  ++.+.|+|-
T Consensus        96 ~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen   96 HHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             cEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            999998531     1    111211  22333 378999999999766554  367888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.55  E-value=0.29  Score=38.96  Aligned_cols=183  Identities=10%  Similarity=0.015  Sum_probs=110.7

Q ss_pred             eeEEEEcCCCCeEEEEecCC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           66 PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+++......-.      ..---..++...| +.....-.++...+||..+
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~------~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~t  119 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP------PRYFGEGITILGD-KLYQLTWKEGTGFVYDPNT  119 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T------TT--EEEEEEETT-EEEEEESSSSEEEEEETTT
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC------ccccceeEEEECC-EEEEEEecCCeEEEEcccc
Confidence            45688877888777777666  7888999988765443221      1112234555433 3444557889999999998


Q ss_pred             CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC----CCceeeEEEccCCCcceEEEEEe
Q 019482          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      .+.+..+.-. ..=..++  .|++.|+.+.....++.+|.++-+....+.-..    -..++.+.|- +|..     .+.
T Consensus       120 l~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I-----yAN  190 (264)
T PF05096_consen  120 LKKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI-----YAN  190 (264)
T ss_dssp             TEEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE-----EEE
T ss_pred             ceEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE-----EEE
Confidence            8877666433 3445565  457777777667789999988776666554221    1245566775 4442     344


Q ss_pred             cCCcceEEEEECCCCcEEeeeecc---------------CCCeeEEEECCCCCEEEEeeC
Q 019482          220 RGDKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLAMGSK  264 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~~  264 (340)
                      .=....|...|..+|+.+..+...               ..-.+.+++.|..+.+.+.+.
T Consensus       191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            445677888899999876654211               234789999987666555543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.52  E-value=0.24  Score=38.30  Aligned_cols=144  Identities=10%  Similarity=-0.023  Sum_probs=82.2

Q ss_pred             CCCeEEEEEecCCCeEEEccCC---------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEE-eeCCCeEEEE
Q 019482          112 AGPQKCLSFSVDGSRFAAGGVD---------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIW  181 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~~d---------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~iw  181 (340)
                      ......-..+|+|++++-.-.|         |.++.|-..  ..+..+...-.--+.++|+.+.+.+.. -+.+-+|.-|
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            3445566778999884322111         334444322  111111111122357889887776554 4456677777


Q ss_pred             E--ccCCe-----eEEEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEE
Q 019482          182 K--TEDGV-----AWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS  251 (340)
Q Consensus       182 d--~~~~~-----~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~  251 (340)
                      |  ..+|.     .+..+...   ..-..-.++...+|..     .++.-..++|...|..+|+.+.++......+++++
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L-----~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc  260 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNL-----YVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC  260 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcE-----EEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence            7  44443     33333221   1111234455556654     45556678899999999999999999999999999


Q ss_pred             ECC-CCCEEEEe
Q 019482          252 ISL-DGKYLAMG  262 (340)
Q Consensus       252 ~s~-~~~~l~~~  262 (340)
                      |-- +-..+++.
T Consensus       261 FgGkn~d~~yvT  272 (310)
T KOG4499|consen  261 FGGKNLDILYVT  272 (310)
T ss_pred             ecCCCccEEEEE
Confidence            953 33444443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.52  E-value=0.72  Score=43.25  Aligned_cols=290  Identities=11%  Similarity=0.056  Sum_probs=144.2

Q ss_pred             ceeEEeeeeecC--CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEE--EcCC-CCeEE
Q 019482            5 GTVTCGSWIKRP--ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIA--VNPS-GDDFV   79 (340)
Q Consensus         5 ~~v~~~~w~~~~--~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~-~~~l~   79 (340)
                      +||..+.--...  .+.+++.+.|    +..++.+++..-.-.-     +......+.| ...+..+.  +.++ .++|+
T Consensus       354 gPI~Dm~Vvd~d~q~q~qivtCsG----a~kdgSLRiiRngi~I-----~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylv  423 (1096)
T KOG1897|consen  354 GPIVDMCVVDLDRQGQGQIVTCSG----AFKDGSLRIIRNGIGI-----DELASIDLPG-IKGMWSLKSMVDENYDNYLV  423 (1096)
T ss_pred             cceeeEEEEeccccCCceEEEEeC----CCCCCcEEEEeccccc-----ceeeEeecCC-ccceeEeeccccccCCcEEE
Confidence            466666665533  4567777666    6788889998654222     3333455666 55677777  4432 22555


Q ss_pred             EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCcccee
Q 019482           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~  158 (340)
                      .+--+ .-++..+... .......      .-......+..|. .++.|+=... ..|++++-. + ...... ....++
T Consensus       424 lsf~~-eTrvl~i~~e-~ee~~~~------gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~-~-~~~~W~-~p~~~t  491 (1096)
T KOG1897|consen  424 LSFIS-ETRVLNISEE-VEETEDP------GFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA-G-LRSEWR-PPGKIT  491 (1096)
T ss_pred             EEecc-ceEEEEEccc-eEEeccc------cccccCceEEEEccCCceEEEEec-ccEEEEcch-h-hhhccc-CCCceE
Confidence            44333 3456665443 1111110      0111222233333 3344443332 357777743 1 222222 233445


Q ss_pred             EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE-EEEecCCcceE-EEEECCCCcE
Q 019482          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF-CTVQRGDKALL-AVYDISTWNK  236 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~d~~i-~i~d~~~~~~  236 (340)
                      ....+.+...++.++.++.+...++..+..........+..+.|+.++|-+...... .++.|..+..+ .+.-......
T Consensus       492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~  571 (1096)
T KOG1897|consen  492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL  571 (1096)
T ss_pred             EEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence            455555566777777777777777776653333333445679999999875433310 13334333332 2222333322


Q ss_pred             Eeeeec----cCCCeeEEEECCCCCEEEEeeCCCcEEEEec--cCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          237 IGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDV--KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       237 ~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      +.....    ....|--..+--|..+|.++..||.+..|-+  .++..-..-...-...|+.--.|+..++.-+.+..|.
T Consensus       572 ~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdr  651 (1096)
T KOG1897|consen  572 ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDR  651 (1096)
T ss_pred             eeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCC
Confidence            222211    1233444556667889999999999886654  4444322111011123555555665554433333454


Q ss_pred             cEEEEE
Q 019482          311 GAMITK  316 (340)
Q Consensus       311 ~i~iw~  316 (340)
                      -..+|.
T Consensus       652 P~viY~  657 (1096)
T KOG1897|consen  652 PTVIYS  657 (1096)
T ss_pred             CEEEEe
Confidence            444443

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.45  E-value=0.076  Score=45.48  Aligned_cols=88  Identities=13%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC-------------cceEEEEEecC
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-------------KPFLFCTVQRG  221 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~  221 (340)
                      ..+.++..+|++++.++...=|.|.++|+.++..++.+++-.+..+.-+.....+.             ...++.++..-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            35788999999998888777799999999999888888765554443333322221             12344467777


Q ss_pred             CcceEEEEECCCCcEEeeeec
Q 019482          222 DKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      ..|.|.||.++++..+..+..
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence            889999999999887755543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.29  Score=37.09  Aligned_cols=174  Identities=16%  Similarity=0.176  Sum_probs=94.5

Q ss_pred             CCCeEEEccC--CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEE-eeCCCeEEEEEccCCeeEEEeecCCCCc
Q 019482          123 DGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLAT-TSTDGSARIWKTEDGVAWTFLTRNSDEK  199 (340)
Q Consensus       123 ~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~~~~~~~~~~~~~~~  199 (340)
                      +|.++.+.+.  ...|++||+.+++.+....-....+..=-...-+..+.. .=.+|.-..+|.++-+++..+.-..+  
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge--  132 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE--  132 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc--
Confidence            4556665554  346999999988876544332222221111121333222 23578888899888888777653333  


Q ss_pred             eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec--cC---CCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LR---KPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~---~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      =+.+  ..|++.     +..+.....++.-|.++.........  ..   ..++.+.| -+|...|-.=.+..|...|..
T Consensus       133 GWgL--t~d~~~-----LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         133 GWGL--TSDDKN-----LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD  204 (262)
T ss_pred             ceee--ecCCcc-----eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence            2344  345554     45555566777777765543322221  11   12333444 245555555455556666666


Q ss_pred             CceEeecccc----------cccccceeeEEEecCC-eEEEEE
Q 019482          275 KMEINHWSKR----------LHLGTSIALVEFCPTQ-RVVLTA  306 (340)
Q Consensus       275 ~~~~~~~~~~----------~~~~~~i~~~~~~~~~-~~l~~~  306 (340)
                      +|++..++..          ..+.+..+.+++.|++ +++++|
T Consensus       205 sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         205 SGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            6666554421          1113467899999987 555555

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.33  E-value=0.47  Score=38.98  Aligned_cols=232  Identities=14%  Similarity=0.135  Sum_probs=106.1

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ...+.+|.|..+..-+++|. .+  .|+...++-........... ....-...++.|..+ +.+++ +..+. .+...+
T Consensus        16 ~~~l~dV~F~d~~~G~~VG~-~g--~il~T~DGG~tW~~~~~~~~-~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~D   88 (302)
T PF14870_consen   16 DKPLLDVAFVDPNHGWAVGA-YG--TILKTTDGGKTWQPVSLDLD-NPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTTD   88 (302)
T ss_dssp             SS-EEEEEESSSS-EEEEET-TT--EEEEESSTTSS-EE-----S------EEEEEEEETT-EEEEE-EETTE-EEEESS
T ss_pred             CCceEEEEEecCCEEEEEec-CC--EEEEECCCCccccccccCCC-ccceeeEEEEEecCC-ceEEE-cCCce-EEEecC
Confidence            45788999985555555554 45  24544443322222211100 001123567777543 34444 44553 333333


Q ss_pred             CCceeeccc---cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          143 SLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       143 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      .++.=..+.   ........+....++..++.+ ..|.|+. ..+.|+.-..+.....+.+..+..+++|++     ++.
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~-----vav  161 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRY-----VAV  161 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-E-----EEE
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcE-----EEE
Confidence            333221111   112233334444444444443 3454332 223455444444445567889999999996     566


Q ss_pred             cCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec-cCceEeec--ccccccccceeeEEE
Q 019482          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV-KKMEINHW--SKRLHLGTSIALVEF  296 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~--~~~~~~~~~i~~~~~  296 (340)
                      +.......-||.-...-....+.....|.+|.|+|++.+.+++ ..|.|+.=+. ...+.-..  .......-.+..++|
T Consensus       162 s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~  240 (302)
T PF14870_consen  162 SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY  240 (302)
T ss_dssp             ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred             ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence            6666667788865422222333445789999999998877755 7888888772 22222111  111111335899999


Q ss_pred             ecCCeEEEEEecC
Q 019482          297 CPTQRVVLTASKE  309 (340)
Q Consensus       297 ~~~~~~l~~~~~d  309 (340)
                      .+++...++|+..
T Consensus       241 ~~~~~~wa~gg~G  253 (302)
T PF14870_consen  241 RPPNEIWAVGGSG  253 (302)
T ss_dssp             SSSS-EEEEESTT
T ss_pred             cCCCCEEEEeCCc
Confidence            9998877766554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.32  E-value=0.58  Score=40.00  Aligned_cols=138  Identities=15%  Similarity=0.184  Sum_probs=73.7

Q ss_pred             CCeeEEEEcCCCCeEEEEe-----------cCC-CEEEEEecCce--ee-eeeccccCCCCCCCCCeEEEEEecCCCeEE
Q 019482           64 GDPMTIAVNPSGDDFVCST-----------TNG-GCKLFEVYGGA--TD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFA  128 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~iw~~~~~~--~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  128 (340)
                      ..+..++|.++|+.+++-.           ..+ .|.+++-.++.  .. ......      .......+++.+++ +++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~------~l~~p~Gi~~~~~G-lyV   86 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE------ELSMVTGLAVAVGG-VYV   86 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec------CCCCccceeEecCC-EEE
Confidence            3577899999998776643           122 56666543221  11 111111      22345789999988 444


Q ss_pred             EccCCCcEEEEeCCCC-----c--eeec-ccc----CccceeEEEecCCCCeEEEeeCC-------------------Ce
Q 019482          129 AGGVDGHLRIMHWPSL-----R--IILD-EPK----AHKSVLDMDFSLDSEFLATTSTD-------------------GS  177 (340)
Q Consensus       129 ~~~~dg~i~~~d~~~~-----~--~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d-------------------~~  177 (340)
                      + ......++.|....     +  .+.. +..    ++.....++|.|||.+.++-+..                   +.
T Consensus        87 ~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~  165 (367)
T TIGR02604        87 A-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG  165 (367)
T ss_pred             e-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence            4 44433333344211     1  1211 211    13357789999999876654411                   34


Q ss_pred             EEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          178 ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       178 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      |.-++...++. ..+.... .....++|+|+|+.
T Consensus       166 i~r~~pdg~~~-e~~a~G~-rnp~Gl~~d~~G~l  197 (367)
T TIGR02604       166 LFRYNPDGGKL-RVVAHGF-QNPYGHSVDSWGDV  197 (367)
T ss_pred             EEEEecCCCeE-EEEecCc-CCCccceECCCCCE
Confidence            55555554433 3333232 23678999999874

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.30  E-value=0.58  Score=42.52  Aligned_cols=199  Identities=12%  Similarity=0.140  Sum_probs=97.6

Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc----ccCccceeEE
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE----PKAHKSVLDM  160 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~i~~~  160 (340)
                      ..|+|++.... .......       ..+.+-.+.|+.+. .|++...+|++.+|++-. +.+...    ......|..+
T Consensus        64 ~~I~If~~sG~-lL~~~~w-------~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec  133 (829)
T KOG2280|consen   64 PYIRIFNISGQ-LLGRILW-------KHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVEC  133 (829)
T ss_pred             eeEEEEecccc-chHHHHh-------cCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEE
Confidence            45788876543 2222222       22477889999776 455668899999999753 222221    1122245555


Q ss_pred             EecCCCCeEEEeeCCCeEEEEE-ccCCeeEEEeecCCCCce--eeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-E
Q 019482          161 DFSLDSEFLATTSTDGSARIWK-TEDGVAWTFLTRNSDEKI--ELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-K  236 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd-~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~  236 (340)
                      .+..+|-.+++.  +|.+.+-+ ... ..+..+........  .+-...+++.....  ++.....--..++-..... .
T Consensus       134 ~~f~~GVavlt~--~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~--ll~v~~~v~~~~~q~~~~~~q  208 (829)
T KOG2280|consen  134 RFFHNGVAVLTV--SGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTI--LLDVDVAVGLHICQVEESRVQ  208 (829)
T ss_pred             EEecCceEEEec--CCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCccee--EEeechhhhhcccceeccccc
Confidence            555566444444  45554433 322 12222222111111  22222233222111  1100000000111111111 1


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      ...+......+..+..||+.++|+.-..+|.|.+-+....+....+.... ..+...++|.-+
T Consensus       209 ~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~-~~~p~qm~Wcgn  270 (829)
T KOG2280|consen  209 LHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTD-HDPPKQMAWCGN  270 (829)
T ss_pred             ccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCC-CCchHhceeecC
Confidence            11222223567889999999999999999999999888777665543222 123335555443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.28  E-value=0.48  Score=38.58  Aligned_cols=201  Identities=11%  Similarity=0.125  Sum_probs=106.8

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecc---cc----CCCCCCCCCeEEEE--EecCCC-eEEEccCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA---KK----MPPLQDAGPQKCLS--FSVDGS-RFAAGGVD  133 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~----~~~~~~~~~v~~~~--~~~~~~-~l~~~~~d  133 (340)
                      ..|..+...|+-+.|++-+ |+.+.++++..-........   ..    .........+...+  -...+. .|+++ ..
T Consensus        36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~k  113 (275)
T PF00780_consen   36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VK  113 (275)
T ss_pred             ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE-EC
Confidence            3499999999877766655 48899999976544331100   00    00112223444444  112333 44444 45


Q ss_pred             CcEEEEeCCCC-----ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC-----------
Q 019482          134 GHLRIMHWPSL-----RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------  197 (340)
Q Consensus       134 g~i~~~d~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----------  197 (340)
                      ..|.+|.....     ..... ....+.+..++|.  ++.++.|.. ....+.|+.++.....+.....           
T Consensus       114 k~i~i~~~~~~~~~f~~~~ke-~~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  114 KKILIYEWNDPRNSFSKLLKE-ISLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             CEEEEEEEECCcccccceeEE-EEcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence            58888887653     22222 2334678899998  566777764 4588889987665443321111           


Q ss_pred             CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe--eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      .++..+... ++..     ++ +. +..-.+.|. .|++.+  .+.. .....++++.  ..||+..+. +.|.||++.+
T Consensus       190 ~~~~~~~~~-~~e~-----Ll-~~-~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~  256 (275)
T PF00780_consen  190 KPLGIFQLS-DNEF-----LL-CY-DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLET  256 (275)
T ss_pred             CceEEEEeC-CceE-----EE-Ee-cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcC
Confidence            122222222 2332     11 11 222223333 343322  2222 2244455552  347777665 5599999999


Q ss_pred             ceEeeccc
Q 019482          276 MEINHWSK  283 (340)
Q Consensus       276 ~~~~~~~~  283 (340)
                      ++.++.+.
T Consensus       257 ~~lvQ~i~  264 (275)
T PF00780_consen  257 GELVQTIP  264 (275)
T ss_pred             CcEEEEEE
Confidence            98887664

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.24  E-value=0.65  Score=39.72  Aligned_cols=228  Identities=16%  Similarity=0.174  Sum_probs=103.5

Q ss_pred             ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec---CC----CCeeEEEEcCCCCeEEEEec--C----C
Q 019482           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE---SE----GDPMTIAVNPSGDDFVCSTT--N----G   85 (340)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~~~~~~~~~~l~~~~~--d----~   85 (340)
                      ++.|+.++-     ..+.|.+++..++..    .|.+..+++.   +.    .....+-.-|+|+.++++-.  +    |
T Consensus        87 Rr~Li~PgL-----~SsrIyviD~~~dPr----~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~G  157 (461)
T PF05694_consen   87 RRYLILPGL-----RSSRIYVIDTKTDPR----KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPG  157 (461)
T ss_dssp             S-EEEEEBT-----TT--EEEEE--S-TT----S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--
T ss_pred             CCcEEeeee-----ccCcEEEEECCCCCC----CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCC
Confidence            445554442     334577776654432    3444444432   11    23445555688988887532  2    4


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc--------------------CCCcEEEEeCCCCc
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--------------------VDGHLRIMHWPSLR  145 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------~dg~i~~~d~~~~~  145 (340)
                      -+.++|-++.+.........    .....-+.+.|.|..+.+++..                    ...++.+||+.+.+
T Consensus       158 gf~llD~~tf~v~g~We~~~----~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~  233 (461)
T PF05694_consen  158 GFVLLDGETFEVKGRWEKDR----GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK  233 (461)
T ss_dssp             EEEEE-TTT--EEEE--SB-----TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred             cEEEEcCccccccceeccCC----CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence            57777777655443332211    1123446788888888888753                    23579999999998


Q ss_pred             eeeccccCcc--ceeEEEec--CCCCe-EEEeeCCCeEEEEEc-cCCe----eEEEeecC--------C--------CCc
Q 019482          146 IILDEPKAHK--SVLDMDFS--LDSEF-LATTSTDGSARIWKT-EDGV----AWTFLTRN--------S--------DEK  199 (340)
Q Consensus       146 ~~~~~~~~~~--~i~~~~~~--~~~~~-l~~~~~d~~v~iwd~-~~~~----~~~~~~~~--------~--------~~~  199 (340)
                      .++.+.-..+  ....+.|.  |+..+ ++.+.-..+|..|-- +.++    .+..+...        .        ..-
T Consensus       234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L  313 (461)
T PF05694_consen  234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL  313 (461)
T ss_dssp             EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred             EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence            8877654433  35567774  44444 444444555555543 3332    11122110        0        234


Q ss_pred             eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc---EEeeeecc----------------CCCeeEEEECCCCCEEE
Q 019482          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN---KIGHKRLL----------------RKPASVLSISLDGKYLA  260 (340)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~----------------~~~i~~~~~s~~~~~l~  260 (340)
                      ++.+..|.|.++++    +++-..|.|+.||+....   .+.+....                .+...-+..|.||+.|.
T Consensus       314 itDI~iSlDDrfLY----vs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY  389 (461)
T PF05694_consen  314 ITDILISLDDRFLY----VSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY  389 (461)
T ss_dssp             ---EEE-TTS-EEE----EEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred             eEeEEEccCCCEEE----EEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence            78999999999753    556678999999997643   22222111                12235577888888887


Q ss_pred             Eee
Q 019482          261 MGS  263 (340)
Q Consensus       261 ~~~  263 (340)
                      +.+
T Consensus       390 vTn  392 (461)
T PF05694_consen  390 VTN  392 (461)
T ss_dssp             EE-
T ss_pred             EEe
Confidence            764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.20  E-value=0.45  Score=40.70  Aligned_cols=145  Identities=9%  Similarity=-0.005  Sum_probs=77.5

Q ss_pred             CCeEEEEEecCCCeEEEcc-----------CCC-cEEEEeCCCC--c--eeeccccCccceeEEEecCCCCeEEEeeCCC
Q 019482          113 GPQKCLSFSVDGSRFAAGG-----------VDG-HLRIMHWPSL--R--IILDEPKAHKSVLDMDFSLDSEFLATTSTDG  176 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~~~d~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  176 (340)
                      .....|+|.++|+++++-.           ..+ .|.+++-.++  .  ....+...-.....+++.+++ .++ ++...
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4557889999998776642           223 6777764322  2  122222223356789999888 444 44443


Q ss_pred             eEEEEEccCC-----e--eEE-EeecC---CCCceeeEEEccCCCcceEEEEEecC------------------CcceEE
Q 019482          177 SARIWKTEDG-----V--AWT-FLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG------------------DKALLA  227 (340)
Q Consensus       177 ~v~iwd~~~~-----~--~~~-~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~d~~i~  227 (340)
                      -.++.|....     +  .+. .+...   .......++|.|||.. ++   ..+.                  ..+.|.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~L-Yv---~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWL-YF---NHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCE-EE---ecccCCCceeccCCCccCcccccCceEE
Confidence            3334344211     1  111 12111   1234778999999973 21   1111                  014566


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK  264 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  264 (340)
                      -+|...++.. .+...-.....++|+|+|+++++-..
T Consensus       168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             EEecCCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence            6666655432 22222234568999999988776543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PHA03098 kelch-like protein; Provisional

Probab=96.13  E-value=1  Score=40.85  Aligned_cols=188  Identities=10%  Similarity=0.054  Sum_probs=86.8

Q ss_pred             CCCeEEEEecCC------CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCC
Q 019482           74 SGDDFVCSTTNG------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWP  142 (340)
Q Consensus        74 ~~~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~  142 (340)
                      ++..++.|+.++      .+..||..+.+... . .. ..  ........+.  -+++.++.|+.+     ..+..||..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~-~~-~~--~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~  366 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-V-PE-LI--YPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPG  366 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-C-CC-CC--cccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCC
Confidence            455666666542      46778877665421 1 11 00  0111112222  356677777765     347778877


Q ss_pred             CCceeec--cccCccceeEEEecCCCCeEEEeeCC------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          143 SLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       143 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      +.+-...  ........ +++ .-+++..+.|+.+      ..+..||+.+.+-.. ............+...++. +  
T Consensus       367 ~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~~~-i--  440 (534)
T PHA03098        367 ESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIYHDGK-I--  440 (534)
T ss_pred             CCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEEECCE-E--
Confidence            6543221  11111111 122 2356777777632      458889987653221 1111100011111222333 2  


Q ss_pred             EEEEecCCc--------ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceE
Q 019482          215 FCTVQRGDK--------ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI  278 (340)
Q Consensus       215 ~~~~~~~~d--------~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~  278 (340)
                        .+.|+.+        ..+.+||..+.+  .+............+.  .+++.++.|+.+     +.+.+||..+.+-
T Consensus       441 --yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        441 --YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             --EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence              2333321        238889987654  2221211111112222  266777777654     4677888777654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.97  E-value=0.21  Score=45.58  Aligned_cols=118  Identities=13%  Similarity=0.102  Sum_probs=74.6

Q ss_pred             eeEEEEcC--CCCeEEEEecCCCEEEEEecCce-----e-------eeeeccccCCCCCCCCCeEEEEEe--cCCCeEEE
Q 019482           66 PMTIAVNP--SGDDFVCSTTNGGCKLFEVYGGA-----T-------DINLLAKKMPPLQDAGPQKCLSFS--VDGSRFAA  129 (340)
Q Consensus        66 v~~~~~~~--~~~~l~~~~~d~~i~iw~~~~~~-----~-------~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~  129 (340)
                      |+.+....  ....|+.+..||.|.+|..+.-.     .       ...........+.....+++++++  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            55555443  44688899999999999874311     0       000000111122245688999998  77889999


Q ss_pred             ccCCCcEEEEeCCCC--ceee-ccccCccceeEEEecCCC---C---eEEEeeCCCeEEEEEc
Q 019482          130 GGVDGHLRIMHWPSL--RIIL-DEPKAHKSVLDMDFSLDS---E---FLATTSTDGSARIWKT  183 (340)
Q Consensus       130 ~~~dg~i~~~d~~~~--~~~~-~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~v~iwd~  183 (340)
                      ++....|.||-....  +... ....+...|.+|.|-++.   .   .+++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            888888888755432  2111 111234478899997643   2   6888889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.97  E-value=0.92  Score=39.05  Aligned_cols=145  Identities=12%  Similarity=0.066  Sum_probs=82.2

Q ss_pred             eEEEEEecCCCeEEEccCCCcEEEEeCCCCce--eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe-----
Q 019482          115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV-----  187 (340)
Q Consensus       115 v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~-----  187 (340)
                      ...+..++++.+++.+..-..++-||  .++.  ..........+..+.+.+++..++++ .+|.+. +....++     
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            34456677887777665433233344  2221  11122334578999999999877766 456544 3334443     


Q ss_pred             eEEEeecC-CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEee
Q 019482          188 AWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       188 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~  263 (340)
                      ........ ....+..+.|.+++.      +...+..|.+.... ..++.=...   .....++..+.|.++++.+++| 
T Consensus       317 ~f~~~~~~~~~~~l~~v~~~~d~~------~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-  388 (398)
T PLN00033        317 DFEEADIKSRGFGILDVGYRSKKE------AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-  388 (398)
T ss_pred             ceeecccCCCCcceEEEEEcCCCc------EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence            22222211 123488899998887      56677777666553 333321111   2224568899988877766666 


Q ss_pred             CCCcEEEE
Q 019482          264 KDGDICVV  271 (340)
Q Consensus       264 ~dg~i~i~  271 (340)
                      .+|.|.-|
T Consensus       389 ~~G~il~~  396 (398)
T PLN00033        389 NDGVLLRY  396 (398)
T ss_pred             CCcEEEEe
Confidence            56766544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.97  E-value=1.5  Score=41.35  Aligned_cols=190  Identities=9%  Similarity=0.035  Sum_probs=110.3

Q ss_pred             CCeEEEccCCCcEEEEeCCCCceeeccccCccc--------eeEEEec----------------CCCCeEEEeeCCCeEE
Q 019482          124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS--------VLDMDFS----------------LDSEFLATTSTDGSAR  179 (340)
Q Consensus       124 ~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--------i~~~~~~----------------~~~~~l~~~~~d~~v~  179 (340)
                      +..++.++.++.|.-.|..+++.+.++......        ...+.+.                ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            446777777889999999999887765432210        1122221                1344788888899999


Q ss_pred             EEEccCCeeEEEeecCCCCcee-------------eEEEcc---CCCcceEEEEEecC----------CcceEEEEECCC
Q 019482          180 IWKTEDGVAWTFLTRNSDEKIE-------------LCRFSK---DGTKPFLFCTVQRG----------DKALLAVYDIST  233 (340)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~~~~~~~~~~~----------~d~~i~i~d~~~  233 (340)
                      -.|.++|+.+..+...  +.+.             .+.-.|   ++.      ++.++          .++.|+-+|.++
T Consensus       274 ALDA~TGk~~W~fg~~--G~vdl~~~~g~~~~g~~~~ts~P~V~~g~------VIvG~~v~d~~~~~~~~G~I~A~Da~T  345 (764)
T TIGR03074       274 ALDADTGKLCEDFGNN--GTVDLTAGMGTTPPGYYYPTSPPLVAGTT------VVIGGRVADNYSTDEPSGVIRAFDVNT  345 (764)
T ss_pred             EEECCCCCEEEEecCC--CceeeecccCcCCCcccccccCCEEECCE------EEEEecccccccccCCCcEEEEEECCC
Confidence            9999999988765321  1110             001111   222      22221          268899999999


Q ss_pred             CcEEeeeecc---------C--------CCe-eEEEECCCCCEEEEee------------------CCCcEEEEeccCce
Q 019482          234 WNKIGHKRLL---------R--------KPA-SVLSISLDGKYLAMGS------------------KDGDICVVDVKKME  277 (340)
Q Consensus       234 ~~~~~~~~~~---------~--------~~i-~~~~~s~~~~~l~~~~------------------~dg~i~i~d~~~~~  277 (340)
                      |+.+-.+...         .        ..+ ..++++|+...++.+.                  ..+.|.-.|.++++
T Consensus       346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk  425 (764)
T TIGR03074       346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK  425 (764)
T ss_pred             CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence            9877554321         0        011 2345556555555432                  12456777888888


Q ss_pred             Eeecccccccc-------cceeeEEEec-CCe---EEEEEecCCcEEEEEecCCC
Q 019482          278 INHWSKRLHLG-------TSIALVEFCP-TQR---VVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       278 ~~~~~~~~~~~-------~~i~~~~~~~-~~~---~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ..-.+...|++       ....-+.+.. +|+   .++.++++|.+++.|-+..+
T Consensus       426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       426 ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            77655443431       1111122322 553   78889999988888876543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.95  E-value=0.83  Score=38.41  Aligned_cols=71  Identities=13%  Similarity=0.030  Sum_probs=38.3

Q ss_pred             ceeeEEEccCCCcceE--EEEEecCCcceEEEEECCCCcEEeee----eccCCCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          199 KIELCRFSKDGTKPFL--FCTVQRGDKALLAVYDISTWNKIGHK----RLLRKPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      .+..+.|.+.....-+  ..++..-..+.|....++....+...    ......+..+++.|||.+.++...+|.|.
T Consensus       254 ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  254 APTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             -EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             ccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4555666544332100  01334444667777777644332221    12334688999999999888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=95.91  E-value=1.3  Score=40.29  Aligned_cols=164  Identities=15%  Similarity=0.103  Sum_probs=87.8

Q ss_pred             CCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc--eeeccccCcc--ceeEEEecC------CCCeEEEeeC-C---C
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHK--SVLDMDFSL------DSEFLATTST-D---G  176 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~--~i~~~~~~~------~~~~l~~~~~-d---~  176 (340)
                      -...|-.+.|.++++.+++...+|.|.+||...+.  .+......+.  -+.+ .|-+      ...++++.+. +   -
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence            35788999999999999999999999999993222  1111111111  1111 2222      1334444443 2   3


Q ss_pred             eEEEEEc-cCCeeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc---C---CCe
Q 019482          177 SARIWKT-EDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL---R---KPA  247 (340)
Q Consensus       177 ~v~iwd~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~---~~i  247 (340)
                      ..+++.+ .....+..+.  ...........|.-+...+  +.+    .+++|.+|++.+.+..+.....   .   ..+
T Consensus       207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~L--Y~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~  280 (670)
T PF10395_consen  207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKL--YQL----SKKTISSYSIPNFQIQKTISLPSIIDKESDDL  280 (670)
T ss_pred             EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEE--EEE----eCCEEEEEEcCCceEEEEEEechhhccccccc
Confidence            5777777 1222223332  1111123334444333321  112    6789999999888766555433   1   123


Q ss_pred             eEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       248 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      .++. .|..+.++.+ .++.|++.|+.-...+....
T Consensus       281 vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  281 VSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             eEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence            3332 2344444444 35789999987665555443

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=1.4  Score=37.88  Aligned_cols=120  Identities=6%  Similarity=0.049  Sum_probs=78.0

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      .+++|.++.|++|.+.||+--.+..|.+++....+.......+..   .....|....|+.+ .-+|.....| +.+|..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck---~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK---TKNANILGFCWTSS-TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc---cCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence            456899999999999999999999999999865544333322111   12356889999866 4566655444 677765


Q ss_pred             CCCc-eeeccccCccceeEEEecCCCCeEEEee--CCCeEEEEEccCC
Q 019482          142 PSLR-IILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDG  186 (340)
Q Consensus       142 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~  186 (340)
                      ...+ .++....+.-.|.-..|.++.+.++-++  ..+++.=+.++++
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            4333 3444445556888899999887644333  3444444444443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.53  E-value=0.49  Score=41.00  Aligned_cols=150  Identities=15%  Similarity=0.111  Sum_probs=89.7

Q ss_pred             cCCCCeEE-EeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE--EEEecCCcceEEEEECCC-CcEEe
Q 019482          163 SLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF--CTVQRGDKALLAVYDIST-WNKIG  238 (340)
Q Consensus       163 ~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~d~~i~i~d~~~-~~~~~  238 (340)
                      ..+..+|. .|.....++--|++.|+.+..+..+..  + -+.|.|..+..-+.  ..+.|-.+..|.-.|.+- +..+.
T Consensus       476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd--v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCcceEEecCCCcccceeeecccceeeeEeecCCc--c-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            33445443 455566788889999999999875543  3 57777764321110  024444566666667653 32222


Q ss_pred             eeeccCCCeeEEEEC----CCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482          239 HKRLLRKPASVLSIS----LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (340)
Q Consensus       239 ~~~~~~~~i~~~~~s----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  314 (340)
                      ... .....+.-.|+    -...++++++..|.|++||--.-.....+ .+- +..|..+..+.+|.++++.+.. .+.+
T Consensus       553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-P~l-G~aIk~idvta~Gk~ilaTCk~-yllL  628 (776)
T COG5167         553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-PGL-GDAIKHIDVTANGKHILATCKN-YLLL  628 (776)
T ss_pred             eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC-ccc-ccceeeeEeecCCcEEEEeecc-eEEE
Confidence            221 11122222233    24569999999999999996443332222 223 6789999999999988777654 5666


Q ss_pred             EEecC
Q 019482          315 TKLTV  319 (340)
Q Consensus       315 w~~~~  319 (340)
                      -+++.
T Consensus       629 ~d~~i  633 (776)
T COG5167         629 TDVPI  633 (776)
T ss_pred             Eeccc
Confidence            66653

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.45  E-value=2.5  Score=40.22  Aligned_cols=166  Identities=11%  Similarity=0.044  Sum_probs=97.2

Q ss_pred             cCCCCeeEEEEc---C--C--CCeEEEEecCCCEEEEEecCcee-------eeeeccccCCCCC----CCCCeEEEEEec
Q 019482           61 ESEGDPMTIAVN---P--S--GDDFVCSTTNGGCKLFEVYGGAT-------DINLLAKKMPPLQ----DAGPQKCLSFSV  122 (340)
Q Consensus        61 ~h~~~v~~~~~~---~--~--~~~l~~~~~d~~i~iw~~~~~~~-------~~~~~~~~~~~~~----~~~~v~~~~~~~  122 (340)
                      .-..+|..|.|.   .  +  .++|++ -....+.|+...-.+.       ...+.......+.    ...+.-+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456789999998   2  1  235544 4444588887322211       0011111111111    234667899999


Q ss_pred             -CCCeEEEccCCCcEEEEeCCCCce----eeccc----c-------CccceeEEEecCCCCeEEEeeCCCeEEEEEccCC
Q 019482          123 -DGSRFAAGGVDGHLRIMHWPSLRI----ILDEP----K-------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG  186 (340)
Q Consensus       123 -~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~----~-------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~  186 (340)
                       +...||+....|...||++.....    .....    +       ....-..+.|.++.+.|+.++. ..+.++|+++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence             566999999999999999921110    00000    1       1123447889888888888875 57999999887


Q ss_pred             eeEE-EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          187 VAWT-FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       187 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      .... .........|..+.-+|......+  +++   ...|...|+..
T Consensus       235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~F--iLT---s~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVTAKTWSWILDVKRSPDNPSHVF--ILT---SKEIIWLDVKS  277 (765)
T ss_pred             CccchhccCCChhheeeEEecCCccceEE--EEe---cCeEEEEEccC
Confidence            6643 233334457888888887443221  233   35577777765

These proteins are found in fungi.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.43  E-value=0.14  Score=39.96  Aligned_cols=67  Identities=15%  Similarity=0.101  Sum_probs=50.0

Q ss_pred             ECCCCCEEEEeeCCCcEEEEeccCceEeecc------ccc------ccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          252 ISLDGKYLAMGSKDGDICVVDVKKMEINHWS------KRL------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       252 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +..+++++++.+.+|.+++||+.+++.....      ...      .....|..+.++.+|.-|++-+ +|..+.|+.+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4467889999999999999999998765332      111      1245789999999998777765 47788888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.34  E-value=1.6  Score=37.41  Aligned_cols=194  Identities=12%  Similarity=0.049  Sum_probs=103.6

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc-c
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-K  155 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~  155 (340)
                      .+..+..+|.+.-.|.+++..........     ....+.+-.+..+|+ ++.++.++.+..+|..+++.+....... -
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-----~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLG-----AVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcC-----cceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            45555778888888888877544332211     011122222223675 7778889999999988888877665544 1


Q ss_pred             ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC--CCceeeEEEccCCCcceEEEEEecCC--cceEEEEEC
Q 019482          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS--DEKIELCRFSKDGTKPFLFCTVQRGD--KALLAVYDI  231 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~  231 (340)
                      .+..-..-.++ .+..++.++.+...|..+++..-......  ...+..--...++.      +..+..  ++.+.-.|.
T Consensus       144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~------vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT------VYVGSDGYDGILYALNA  216 (370)
T ss_pred             EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce------EEEecCCCcceEEEEEc
Confidence            11111222233 34444467889888888888766644221  11111111122332      333333  557778888


Q ss_pred             CCCcEEeeeeccC----CCeeEE-EECC----CCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          232 STWNKIGHKRLLR----KPASVL-SISL----DGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       232 ~~~~~~~~~~~~~----~~i~~~-~~s~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      .+++..-..+...    ..+... .+..    .+.-++.++.++.+...|..+++.+-...
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence            8887654432111    111001 1100    11223556667778888888888776553

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.21  E-value=0.19  Score=39.24  Aligned_cols=65  Identities=14%  Similarity=0.188  Sum_probs=47.4

Q ss_pred             EecCCCeEEEccCCCcEEEEeCCCCceeecc------c--------cCccceeEEEecCCCCeEEEeeCCCeEEEEEccC
Q 019482          120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDE------P--------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED  185 (340)
Q Consensus       120 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~------~--------~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~  185 (340)
                      +..+++++++.+.+|.+++||+.+++.+..-      .        .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457889999999999999999987754332      1        2334678888888887666665 57788888653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.18  E-value=0.097  Score=28.42  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             CCeeEEEECCCC---CEEEEeeCCCcEEEEeccC
Q 019482          245 KPASVLSISLDG---KYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       245 ~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~  275 (340)
                      +.+.++.|||+.   .+|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357899999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.12  E-value=1.8  Score=37.84  Aligned_cols=114  Identities=11%  Similarity=0.050  Sum_probs=61.5

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC------CeEEEcc---
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG------SRFAAGG---  131 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~---  131 (340)
                      ..-...+.|+|.|||+.|++--..|.|++++..+..................+....|+++|+-      .+|+...   
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~  106 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK  106 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence            3456688999999998776655468899987654432111111101011135778999999874      2444332   


Q ss_pred             -------CCCcEEEEeCCCC-------ceeec-cccC-ccceeEEEecCCCCeEEEeeC
Q 019482          132 -------VDGHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTST  174 (340)
Q Consensus       132 -------~dg~i~~~d~~~~-------~~~~~-~~~~-~~~i~~~~~~~~~~~l~~~~~  174 (340)
                             ....|.-|.+...       +.+.. .... ...-..|+|.|||.++++.+.
T Consensus       107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD  165 (454)
T TIGR03606       107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE  165 (454)
T ss_pred             CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence                   1223444544321       11111 1110 012356889999987665553

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.06  E-value=1.7  Score=37.95  Aligned_cols=141  Identities=11%  Similarity=0.032  Sum_probs=78.1

Q ss_pred             CCCeEEE-EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-------eEEEccCCCcEEEEeCCC-C
Q 019482           74 SGDDFVC-STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-------RFAAGGVDGHLRIMHWPS-L  144 (340)
Q Consensus        74 ~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~~~d~~~-~  144 (340)
                      +...|+. +.....++-.|++.++.+.....       + ..+ -+.|.|+.+       .-++|-.+..|.-.|.+- +
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~-------~-ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g  548 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL-------K-DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG  548 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeec-------C-Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence            4444443 44445677777777766544432       1 222 466766432       223344455555555543 2


Q ss_pred             ceeeccccCcc-----ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          145 RIILDEPKAHK-----SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       145 ~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      ..+. ......     ...+..-. .+.+++.++..|-|++||.- |....+..+.....|..+..+.+|+++      .
T Consensus       549 NKi~-v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~i------l  619 (776)
T COG5167         549 NKIK-VVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHI------L  619 (776)
T ss_pred             Ccee-eeeehhccccccccccccc-cCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEE------E
Confidence            2221 111122     22333222 34589999999999999953 444444444556679999999999962      2


Q ss_pred             cCCcceEEEEECC
Q 019482          220 RGDKALLAVYDIS  232 (340)
Q Consensus       220 ~~~d~~i~i~d~~  232 (340)
                      +.....+.+-|++
T Consensus       620 aTCk~yllL~d~~  632 (776)
T COG5167         620 ATCKNYLLLTDVP  632 (776)
T ss_pred             EeecceEEEEecc
Confidence            2334566677764

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=1.5  Score=35.31  Aligned_cols=196  Identities=12%  Similarity=-0.011  Sum_probs=109.8

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE-
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW-  189 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~-  189 (340)
                      +-+..+.++.  ++...+..+.-+++.|+.+..........  .+-..++..+  |++...+..|.-+.+.|+.+.+.. 
T Consensus        87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCce
Confidence            4566777764  46666777778999999876644332221  1233444444  888888886667788888765432 


Q ss_pred             --EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee--eccCCCeeEEEECCCCCEEEEeeCC
Q 019482          190 --TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLDGKYLAMGSKD  265 (340)
Q Consensus       190 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~d  265 (340)
                        .... ........++.|-  ++     ...+..|+-+.+-|+........+  ......+.++..+++..+++...+ 
T Consensus       163 lagrya-~~~~d~~~v~ISG--n~-----AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e-  233 (370)
T COG5276         163 LAGRYA-LPGGDTHDVAISG--NY-----AYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-  233 (370)
T ss_pred             eeeeec-cCCCCceeEEEec--Ce-----EEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-
Confidence              2222 1222234555554  33     344556778999998766532111  112236778888887777766543 


Q ss_pred             CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       266 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                       -+.+-|..+.+-...+-......++.--.+.-.+++......+..+-+-++..|..
T Consensus       234 -gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s  289 (370)
T COG5276         234 -GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS  289 (370)
T ss_pred             -ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC
Confidence             37777776654332221111112221112333455666666666666666665543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.98  E-value=2.2  Score=36.97  Aligned_cols=278  Identities=11%  Similarity=0.079  Sum_probs=138.3

Q ss_pred             ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-----CCCeEEEEecCCCEEEEEec
Q 019482           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-----SGDDFVCSTTNGGCKLFEVY   93 (340)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~~~d~~i~iw~~~   93 (340)
                      ...++.|+      ..|.++||.-....... ....++..+   ..+|..++.-+     +...||. -.-..+.+|.+.
T Consensus        37 ~d~IivGS------~~G~LrIy~P~~~~~~~-~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~  105 (418)
T PF14727_consen   37 SDKIIVGS------YSGILRIYDPSGNEFQP-EDLLLETQL---KDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS  105 (418)
T ss_pred             ccEEEEec------cccEEEEEccCCCCCCC-ccEEEEEec---CCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence            34555555      55669999763322111 122333333   45777777643     2234444 455668899884


Q ss_pred             Ccee--------eeeeccccCCCCCCCCCeEEEEEec----C-CCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           94 GGAT--------DINLLAKKMPPLQDAGPQKCLSFSV----D-GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        94 ~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      ....        ......++.    -......+..-|    . ..+|++-+.||.+.+|+-+.-.....+.. .--...+
T Consensus       106 ~~~g~~~~g~~~~L~~~yeh~----l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl  180 (418)
T PF14727_consen  106 LVDGTVEHGNQYQLELIYEHS----LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPL  180 (418)
T ss_pred             ecCCCcccCcEEEEEEEEEEe----cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCe
Confidence            3211        111111110    122334444444    2 35788889999999999654433322222 2233457


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCC---------------------eeEEEeecCCCCceeeEEEccCC-CcceEEEEE
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDG---------------------VAWTFLTRNSDEKIELCRFSKDG-TKPFLFCTV  218 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~  218 (340)
                      .+.+....|++++.+..+.-|....-                     +....+...-.+.+..+..-... ....   ++
T Consensus       181 ~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~---Iv  257 (418)
T PF14727_consen  181 CYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESD---IV  257 (418)
T ss_pred             EEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCce---EE
Confidence            88888888999988888888865320                     00111111112233333322211 1101   11


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEE-EC----CCC---CEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLS-IS----LDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~s----~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  290 (340)
                      .-+ ...+.+.+. +|... ..+..+....++. +.    .++   ..+++++.++.+.||.=.+-.-...+  .+..-.
T Consensus       258 vLg-er~Lf~l~~-~G~l~-~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l--~~~PVa  332 (418)
T PF14727_consen  258 VLG-ERSLFCLKD-NGSLR-FQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL--PHVPVA  332 (418)
T ss_pred             EEe-cceEEEEcC-CCeEE-EEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC--CCCCEE
Confidence            111 334445544 34333 2232232222222 21    122   24888889999999964433322222  221112


Q ss_pred             eeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          291 IALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      +.-..|..-...|++-+.+|.+.+--+-..
T Consensus       333 l~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd  362 (418)
T PF14727_consen  333 LSVANFNGLKGLIVSLSDEGQLSVSYLGTD  362 (418)
T ss_pred             EEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence            333334334567999999999999988643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.89  E-value=0.17  Score=27.47  Aligned_cols=30  Identities=27%  Similarity=0.336  Sum_probs=25.3

Q ss_pred             ceeEEEecCCC---CeEEEeeCCCeEEEEEccC
Q 019482          156 SVLDMDFSLDS---EFLATTSTDGSARIWKTED  185 (340)
Q Consensus       156 ~i~~~~~~~~~---~~l~~~~~d~~v~iwd~~~  185 (340)
                      .+.+++|+|+.   .+|+.+-.-+.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999844   5888888889999999985

It contains a characteristic DLL sequence motif.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.83  E-value=0.76  Score=39.33  Aligned_cols=141  Identities=13%  Similarity=0.084  Sum_probs=83.9

Q ss_pred             eEEEecCCCCeEEEeeCCCeEEEEEccC--CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          158 LDMDFSLDSEFLATTSTDGSARIWKTED--GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      +.+-|...++.++ +...|.+.=|-+..  ......+.....++|.++.||+|.+.     ++.-..+++|.+++....+
T Consensus        26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnki-----lAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKI-----LAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcce-----EEEEecCceEEEEecCCCc
Confidence            3444543333333 23344455555432  22333444445678999999999997     7788889999999874333


Q ss_pred             EE----eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482          236 KI----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       236 ~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      ..    ...+.....|....|+.+ .-+|..+..| +-+|.....+....+-..+ .-.|+...|.++-+.+.-++
T Consensus       100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~-~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSH-NLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhc-ccCccEEEEccccceEeeec
Confidence            22    112233456888889766 6677766555 7777665433222222333 45788888988877654444

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.65  E-value=2.6  Score=36.35  Aligned_cols=147  Identities=14%  Similarity=0.103  Sum_probs=80.1

Q ss_pred             eeEEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      ...+..++++.+++.+..-..++-||-  ++. -..........+..+.|.+++..      +..+..+.+.. ....++
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l------~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGL------WLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCE------EEEeCCceEEE-ecCCCC
Confidence            344566778877777664333333442  322 12233334456889999999884      44455565443 333332


Q ss_pred             -----EEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc-ccccccceeeEEEecCCeEEEEEe
Q 019482          236 -----KIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       236 -----~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                           .......  ....+..+.+.+++..+++| .+|.+..-. ..++.-.... ..........+.|.++++.+++| 
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-  388 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-  388 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-
Confidence                 1122221  12358889998887766666 567655543 3444322211 11113468899998877766665 


Q ss_pred             cCCcEEEE
Q 019482          308 KEWGAMIT  315 (340)
Q Consensus       308 ~dg~i~iw  315 (340)
                      .+|.|.-|
T Consensus       389 ~~G~il~~  396 (398)
T PLN00033        389 NDGVLLRY  396 (398)
T ss_pred             CCcEEEEe
Confidence            56665433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.61  E-value=4  Score=38.24  Aligned_cols=81  Identities=16%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCc----------eeeeee----ccccCCCCCCCCCeEEEEEecC---CCe
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG----------ATDINL----LAKKMPPLQDAGPQKCLSFSVD---GSR  126 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~----------~~~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~  126 (340)
                      -.|..+.++|+|+++|..+..| |.|-.+...          ......    .............|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            3588999999999999998877 666655321          110010    1111111234568899999995   467


Q ss_pred             EEEccCCCcEEEEeCCCCc
Q 019482          127 FAAGGVDGHLRIMHWPSLR  145 (340)
Q Consensus       127 l~~~~~dg~i~~~d~~~~~  145 (340)
                      |++-..|+++++||+....
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8888889999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.52  E-value=2  Score=35.03  Aligned_cols=118  Identities=14%  Similarity=0.198  Sum_probs=69.4

Q ss_pred             CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEee------CCCeEEEEEccCCeeEEEeecC----CCCceeeE
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS------TDGSARIWKTEDGVAWTFLTRN----SDEKIELC  203 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~v~iwd~~~~~~~~~~~~~----~~~~v~~~  203 (340)
                      ..|++||..+.+-..--.+-.+.|.++.|..+.+.++.|.      ....+..||+.+.. ...+...    -.+++..+
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~   94 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL   94 (281)
T ss_pred             CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence            3589999877665443334556899999987777777664      35578899987654 3333321    23567777


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eeccCCCeeEEEE
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSI  252 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~  252 (340)
                      .+..+....+.+.......+..|..||-.++..+.. .......|..+.+
T Consensus        95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            775433321211111244566788888777766544 2222344555544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.52  E-value=0.0063  Score=51.59  Aligned_cols=144  Identities=12%  Similarity=0.052  Sum_probs=97.9

Q ss_pred             eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      .....|.|.+..++.++.+..+..||-. ++......  ..+....++|..++...    ++.+...+.+.+||+.+...
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n--~tg~aldm~wDkegdvl----avlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN--PTGKALDMAWDKEGDVL----AVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceecccC--CchhHhhhhhccccchh----hhhhhcCCCeeechhhhhhH
Confidence            3456788877778888888899999953 44444333  33446678888887763    45556778899999986442


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      -..-.+....-.-+.|++.+..++.+...|.+.|++..+.+.....  +.+...+++++|.+.+. .+.++.|.
T Consensus       110 qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--GKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh--cccccceeEEEecccce-eeecCcHH
Confidence            1111122222233789999999999999999999998877665443  32257899999998765 44555443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.50  E-value=0.0054  Score=51.99  Aligned_cols=137  Identities=12%  Similarity=0.124  Sum_probs=93.1

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWP  142 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~  142 (340)
                      .......|-|.+.-++.++.+..+..||-...... ..        ...+....++|..++..++ .+-..+.+.+||+.
T Consensus        35 v~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~--------n~tg~aldm~wDkegdvlavlAek~~piylwd~n  105 (615)
T KOG2247|consen   35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-EL--------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN  105 (615)
T ss_pred             cccceeeEecCCCceehhhhhhHHHhhhhhcceec-cc--------CCchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence            34456678888877888888888888885443221 11        1335667788888877554 45567899999997


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      +....+-..+....-.-+.|++....++.+...+.+.|++..+.+.+... +.+...+.++++.+.+.
T Consensus       106 ~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~  172 (615)
T KOG2247|consen  106 SEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDY  172 (615)
T ss_pred             hhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccce
Confidence            64433222233222233789998889999989999999998776554444 22445688888888876

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.36  E-value=2.7  Score=35.29  Aligned_cols=66  Identities=23%  Similarity=0.290  Sum_probs=44.0

Q ss_pred             CeeEEEEcCCCCeEEEEecC------CCEEEEEecCceeeeee-ccccC-------CCCCCCCCeEEEEEecCCCeEEEc
Q 019482           65 DPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDINL-LAKKM-------PPLQDAGPQKCLSFSVDGSRFAAG  130 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~  130 (340)
                      ..-+|++.++|.++++.-.+      ..|..++.. ++....+ .....       ...+.+....+++++|+|+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            45578887788888877767      677777766 4443333 11111       233456788999999999966665


Q ss_pred             c
Q 019482          131 G  131 (340)
Q Consensus       131 ~  131 (340)
                      .
T Consensus       165 ~  165 (326)
T PF13449_consen  165 M  165 (326)
T ss_pred             E
Confidence            4

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.26  E-value=4  Score=37.75  Aligned_cols=156  Identities=10%  Similarity=0.033  Sum_probs=87.3

Q ss_pred             CCeEEEEecCCCEEEEEecCceeee------eecccc-CCC--------CCCCCCeEEEEEec--CCCeEEEccCCCcEE
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDI------NLLAKK-MPP--------LQDAGPQKCLSFSV--DGSRFAAGGVDGHLR  137 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~------~~~~~~-~~~--------~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~  137 (340)
                      .++++.+. .+.|.||+++......      .+.... ...        .+....|+.|....  +...|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            56666655 5669999987543311      111100 000        00112344444433  455888899999999


Q ss_pred             EEeCCC-------C----ce--------eeccccCccceeEEEec--CCCCeEEEeeCCCeEEEEEccCC--eeEEEeec
Q 019482          138 IMHWPS-------L----RI--------ILDEPKAHKSVLDMDFS--LDSEFLATTSTDGSARIWKTEDG--VAWTFLTR  194 (340)
Q Consensus       138 ~~d~~~-------~----~~--------~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~  194 (340)
                      +|.+++       .    +.        ..-.......+++++++  ...++||+++....|.||-....  +....-..
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~  207 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH  207 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence            997631       1    00        00011123468899998  77888888888888888766542  11111011


Q ss_pred             CCCCceeeEEEccCCCcceE-EEEEecCCcceEEEEEC
Q 019482          195 NSDEKIELCRFSKDGTKPFL-FCTVQRGDKALLAVYDI  231 (340)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~  231 (340)
                      .+...|.+++|-++.....- ..+++++-.|.+.+|++
T Consensus       208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            23345889999876522110 12566677888888777

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.22  E-value=1.3  Score=31.12  Aligned_cols=118  Identities=10%  Similarity=0.017  Sum_probs=70.3

Q ss_pred             EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-----CCCeEEEccCCCcEEEEeCC
Q 019482           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-----DGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~~d~~  142 (340)
                      .-.|......|++++.-|+|.|++.................+.-...|++++-.+     +...|+.|+ ...+..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence            3456666668888888899999987654322111111122223446777776544     344677766 4579999998


Q ss_pred             CCceeeccccCccceeEEEecC----CCCeEEEeeCCCeEEEEEccCCee
Q 019482          143 SLRIILDEPKAHKSVLDMDFSL----DSEFLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~v~iwd~~~~~~  188 (340)
                      ....+. .+.-.+.+.++.+-.    +..+++.|+ +..|.-||.+-.+.
T Consensus        82 ~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   82 NNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEI  129 (136)
T ss_pred             cCchhh-hhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEE
Confidence            776554 334446777777632    234455544 56777777654443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.15  E-value=2.6  Score=34.31  Aligned_cols=203  Identities=11%  Similarity=0.022  Sum_probs=113.1

Q ss_pred             CeEEEEEecCCCeEEEccCCCcEEEEeCC------CC-ceeecccc-----CccceeEEEecCCCC------------eE
Q 019482          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWP------SL-RIILDEPK-----AHKSVLDMDFSLDSE------------FL  169 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~------~~-~~~~~~~~-----~~~~i~~~~~~~~~~------------~l  169 (340)
                      ..+.|+++|.+.+-++....+...+||..      .. ..+..+..     .....+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            45789999999888888888999999986      11 12223321     123566777764332            26


Q ss_pred             EEeeCCCeEEEEEccCCee-----EEEeecCC-CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe--eee
Q 019482          170 ATTSTDGSARIWKTEDGVA-----WTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG--HKR  241 (340)
Q Consensus       170 ~~~~~d~~v~iwd~~~~~~-----~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~  241 (340)
                      +.+++||+|.-|...-+..     ...+.... ......+++...+...+|  .++.-..++|.+||-.-.+...  .+.
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~L--YaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYL--YAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceE--EEeccCCCceEEecCccccccCCCCcc
Confidence            7778899999998532222     12222111 222345666544322222  2444568889999865432210  011


Q ss_pred             ccC-----CC-----------eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec------C
Q 019482          242 LLR-----KP-----------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP------T  299 (340)
Q Consensus       242 ~~~-----~~-----------i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~------~  299 (340)
                      ...     .+           |+-..-.++++.=+.|..-|.|-+||+.. +.++.+.....-..-+.++..|      .
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCC
Confidence            000     00           11111122222223334457899999854 4444332222234667888766      4


Q ss_pred             CeEEEEEecCCcEEEEEecC
Q 019482          300 QRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~  319 (340)
                      |.+|+---.||+|..+|...
T Consensus       261 g~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             CCeEEeecCCceeEEecCCC
Confidence            67787777899999999763

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=94.07  E-value=3.1  Score=34.92  Aligned_cols=148  Identities=16%  Similarity=0.162  Sum_probs=82.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCC------EEEEEecCce-eeeee--------ccccCCCCC-CCCCeEEEEEecCCCe
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGG------CKLFEVYGGA-TDINL--------LAKKMPPLQ-DAGPQKCLSFSVDGSR  126 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~------i~iw~~~~~~-~~~~~--------~~~~~~~~~-~~~~v~~~~~~~~~~~  126 (340)
                      -+.+..+.+.|++..+++.+.+|.      +..+++.... .....        .......+. ..--..++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            355788999876667777777776      5555554310 00000        000000010 0113447888778888


Q ss_pred             EEEccCC------CcEEEEeCCCCceeecc---------------ccCccceeEEEecCCCCeEEEeeC-----CC--e-
Q 019482          127 FAAGGVD------GHLRIMHWPSLRIILDE---------------PKAHKSVLDMDFSLDSEFLATTST-----DG--S-  177 (340)
Q Consensus       127 l~~~~~d------g~i~~~d~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~~l~~~~~-----d~--~-  177 (340)
                      +++.-.+      ..|..++.. ++....+               ........+|+++|+|+.|+++..     |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776666      678888865 4433222               112336889999999996665542     22  1 


Q ss_pred             ------EEEE--EccC-CeeEEEee--cC------CCCceeeEEEccCCCc
Q 019482          178 ------ARIW--KTED-GVAWTFLT--RN------SDEKIELCRFSKDGTK  211 (340)
Q Consensus       178 ------v~iw--d~~~-~~~~~~~~--~~------~~~~v~~~~~~~~~~~  211 (340)
                            ++++  |..+ ++....+.  ..      ....+..+.+.++++.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l  228 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL  228 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE
Confidence                  4554  4443 22222221  11      2356888999999984

>PHA02790 Kelch-like protein; Provisional

Probab=93.87  E-value=4.6  Score=36.09  Aligned_cols=184  Identities=9%  Similarity=-0.004  Sum_probs=82.4

Q ss_pred             CCCeEEEEecCC-----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--CcEEEEeCCCCce
Q 019482           74 SGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMHWPSLRI  146 (340)
Q Consensus        74 ~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~  146 (340)
                      ++..++.|+.++     .+..||..++.....  .    +......-.+++ .-++...+.|+.+  ..+..||..+++-
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~--~----~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W  343 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI--P----PMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAW  343 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC--C----CCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeE
Confidence            445566776543     466677766543211  1    011111111222 2367677777754  3577888765433


Q ss_pred             ee--ccccCccceeEEEecCCCCeEEEeeCCC---eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482          147 IL--DEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       147 ~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      ..  .+.........+  .-+|+..+.|+.++   .+..||.++.+=.. ...............-+++.     .+.| 
T Consensus       344 ~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~-~~~m~~~r~~~~~~~~~~~I-----Yv~G-  414 (480)
T PHA02790        344 VNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQF-GPSTYYPHYKSCALVFGRRL-----FLVG-  414 (480)
T ss_pred             EECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEe-CCCCCCccccceEEEECCEE-----EEEC-
Confidence            22  121111111222  23577777777553   46778876543221 11111000111112234432     2233 


Q ss_pred             CcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCce
Q 019482          222 DKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKME  277 (340)
Q Consensus       222 ~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~  277 (340)
                        |...+||.++.+  .+..+.........+.  -+|+..++|+.+     ..+..||..+.+
T Consensus       415 --G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        415 --RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             --CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence              246678876543  2222222122222222  366777777754     235566655544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.76  E-value=3.7  Score=37.71  Aligned_cols=174  Identities=12%  Similarity=0.126  Sum_probs=88.4

Q ss_pred             CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee---cCCCCceeeEEEccCC
Q 019482          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT---RNSDEKIELCRFSKDG  209 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~  209 (340)
                      .-.|+||++. |..+.+..-.+..+..+.|+.+. .|++...+|++++|++- |+.+....   ......|..+.+..+|
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence            3458888864 55555555555578889999765 46666789999999985 33322211   1122345556666565


Q ss_pred             CcceEEEEEecCCcceE-EEEECCCCcEEeeeec-cCCCeeEEEE---CCCC--CEEEEee-CCCcEEEEeccC--ceEe
Q 019482          210 TKPFLFCTVQRGDKALL-AVYDISTWNKIGHKRL-LRKPASVLSI---SLDG--KYLAMGS-KDGDICVVDVKK--MEIN  279 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i-~i~d~~~~~~~~~~~~-~~~~i~~~~~---s~~~--~~l~~~~-~dg~i~i~d~~~--~~~~  279 (340)
                      -       +.-..++.+ .+-+...... ..++. .......-+|   .|..  ..++-.. ..+ ..++-...  .+..
T Consensus       140 V-------avlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~  210 (829)
T KOG2280|consen  140 V-------AVLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLH  210 (829)
T ss_pred             e-------EEEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccc
Confidence            4       222223333 3333332211 11111 1111111222   2211  1111111 111 11222222  1222


Q ss_pred             ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      . +...  .+.+..+..||+.++|+--..+|.+.+-+.+...
T Consensus       211 ~-~~~~--~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~  249 (829)
T KOG2280|consen  211 A-LSWP--NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ  249 (829)
T ss_pred             c-cCCC--CceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence            1 1122  2578889999999999999999988887776544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.53  E-value=0.07  Score=49.09  Aligned_cols=150  Identities=15%  Similarity=0.146  Sum_probs=83.3

Q ss_pred             CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--CcE-----EeeeeccCCCe
Q 019482          175 DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK-----IGHKRLLRKPA  247 (340)
Q Consensus       175 d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~-----~~~~~~~~~~i  247 (340)
                      .+-+++-+......-..+.....+.+..++|-...-- -   +.  ..-|.+.+||++-  |+.     +........++
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~p-k---~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~  183 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCP-K---GR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP  183 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCCh-H---HH--HHhhhhheeehHhhccccccceEEeecCcCCCCc
Confidence            3456666554332212233334455666776432110 0   11  2235678888763  332     12222233455


Q ss_pred             eEEEECC---CCCEEEEeeCCCcEEEEeccCceEeeccccccccccee-----------eEEEecCCeEEEEEecCCcEE
Q 019482          248 SVLSISL---DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA-----------LVEFCPTQRVVLTASKEWGAM  313 (340)
Q Consensus       248 ~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~l~~~~~dg~i~  313 (340)
                      .-+.|.|   +.-++..+-.++.+++........  .+...| +..+.           --..||||..++.+..||.++
T Consensus       184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsH-s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSH-SQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             ceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhc-CCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            6667766   567788888888888877655332  222234 22222           223799999999999999999


Q ss_pred             EEEecCCCC--CCCCccccccc
Q 019482          314 ITKLTVPAD--WKGLSLPLLHS  333 (340)
Q Consensus       314 iw~~~~~~~--~~~~~~~~~h~  333 (340)
                      .|.+-..+.  ...+..++.|.
T Consensus       261 f~Qiyi~g~~~~rclhewkphd  282 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWKPHD  282 (1283)
T ss_pred             eeeeeeeccccHhhhhccCCCC
Confidence            998876543  12334444444

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.49  E-value=3.7  Score=36.05  Aligned_cols=26  Identities=19%  Similarity=0.172  Sum_probs=16.2

Q ss_pred             eeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      |..+..++.|..     ++..+.+|.+.++=
T Consensus       106 V~~vl~s~~GS~-----VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  106 VYQVLLSPTGSH-----VALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEecCCCce-----EEEecCCeeEEEEc
Confidence            556677788876     45556666555443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.44  E-value=1.5  Score=32.91  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=24.8

Q ss_pred             ceeEEEecCCC------CeEEEeeCCCeEEEEEccC
Q 019482          156 SVLDMDFSLDS------EFLATTSTDGSARIWKTED  185 (340)
Q Consensus       156 ~i~~~~~~~~~------~~l~~~~~d~~v~iwd~~~  185 (340)
                      .+..++|||.|      ..|++.+.++.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            78999999954      3688888999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.25  E-value=5.4  Score=35.03  Aligned_cols=111  Identities=13%  Similarity=0.119  Sum_probs=60.6

Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCee--EEEee----cCCCCceeeEEEccCC----CcceEEEEEecC---
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLT----RNSDEKIELCRFSKDG----TKPFLFCTVQRG---  221 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~----~~~~~~v~~~~~~~~~----~~~~~~~~~~~~---  221 (340)
                      .....|+|.||+++|++--..|.|++++..++..  +..+.    ....+....++++|+-    ...+++...+..   
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            3568899999998777654469999998655432  21111    1124568899999884    211222222111   


Q ss_pred             ----CcceEEEEECCCC--c---EEeeeecc----CCCeeEEEECCCCCEEEEeeCC
Q 019482          222 ----DKALLAVYDISTW--N---KIGHKRLL----RKPASVLSISLDGKYLAMGSKD  265 (340)
Q Consensus       222 ----~d~~i~i~d~~~~--~---~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~d  265 (340)
                          ....|.-|.+...  .   ....+...    .+.-..+.|.|||.+.++.++.
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                1234555554321  1   11112111    1334678899999877655443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.12  E-value=1  Score=33.71  Aligned_cols=31  Identities=16%  Similarity=0.155  Sum_probs=25.2

Q ss_pred             CCeeEEEECCCC------CEEEEeeCCCcEEEEeccC
Q 019482          245 KPASVLSISLDG------KYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       245 ~~i~~~~~s~~~------~~l~~~~~dg~i~i~d~~~  275 (340)
                      ..+..++|||.|      -+|++.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            378899999953      4688889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=92.79  E-value=0.78  Score=39.24  Aligned_cols=166  Identities=11%  Similarity=0.033  Sum_probs=92.8

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccCCCcEEEE
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      .-..+|..+-..|||+.+..-+. .++.++++.+.....+......+ -+....|. .+..-..|.-+++++.||.|.-|
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dsp-g~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW  295 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSP-GDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW  295 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCC-CchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence            33456778888999998877666 55889988765543222211100 00001122 12222345567788889988877


Q ss_pred             -eCCCCcee-----eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          140 -HWPSLRII-----LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       140 -d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                       |++.+...     +.+.-...++..+.-..+.+-+++-+..|++.++.....+.+..-. .. ..+.-+++||.+.+  
T Consensus       296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~-~~~~~~~~Sp~~~~--  371 (733)
T COG4590         296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AY-QAPQLVAMSPNQAY--  371 (733)
T ss_pred             eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hh-cCcceeeeCcccch--
Confidence             54433221     1111111233322222233457777888888888755444332221 22 25778999999986  


Q ss_pred             EEEEEecCCcceEEEEECCCCcE
Q 019482          214 LFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                          +..-+.+.|+++.+++..+
T Consensus       372 ----Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         372 ----LLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             ----heeecCCceEEEEecCCCC
Confidence                3335567899988877554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.69  E-value=5.7  Score=36.66  Aligned_cols=68  Identities=21%  Similarity=0.306  Sum_probs=43.2

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      ...++++.-+|.|..++.+..||.|.+|+....+......        ...+-..+.|...|  |+++..|..+.-|.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~--------~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE--------EAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh--------hcCCccceeeeccc--eEEEeccchhheee
Confidence            3457788889999999999999999999987654321111        11233445555444  44444555555554

>PHA02790 Kelch-like protein; Provisional

Probab=92.64  E-value=7.2  Score=34.86  Aligned_cols=172  Identities=7%  Similarity=-0.067  Sum_probs=78.2

Q ss_pred             CCCeEEEccCCC-----cEEEEeCCCCceeec--cccCccceeEEEecCCCCeEEEeeCC--CeEEEEEccCCeeEEEee
Q 019482          123 DGSRFAAGGVDG-----HLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWTFLT  193 (340)
Q Consensus       123 ~~~~l~~~~~dg-----~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--~~v~iwd~~~~~~~~~~~  193 (340)
                      ++..+++|+.++     .+..||..+++....  ......... ++ .-++...+.|+.+  .++..||..+++-. .+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~-~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAWV-NMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeEE-ECC
Confidence            455566776542     467788776553321  111111122 22 2367777777754  35778887654321 111


Q ss_pred             cCCCCceeeEEEccCCCcceEEEEEecCCc---ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482          194 RNSDEKIELCRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDI  268 (340)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  268 (340)
                      .-...........-+|+.     .+.||.+   ..+..||.++.+  .+..+....... ++ ..-+++..+.|+   .+
T Consensus       348 ~l~~~r~~~~~~~~~g~I-----YviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~  417 (480)
T PHA02790        348 SLLKPRCNPAVASINNVI-----YVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NA  417 (480)
T ss_pred             CCCCCCcccEEEEECCEE-----EEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ce
Confidence            111111111111223432     2333332   456788877643  211111111111 11 223566666663   47


Q ss_pred             EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      .+||.++.+-........ ...-.+++ .-+|+..+.||.+
T Consensus       418 e~ydp~~~~W~~~~~m~~-~r~~~~~~-v~~~~IYviGG~~  456 (480)
T PHA02790        418 EFYCESSNTWTLIDDPIY-PRDNPELI-IVDNKLLLIGGFY  456 (480)
T ss_pred             EEecCCCCcEeEcCCCCC-CccccEEE-EECCEEEEECCcC
Confidence            789987765433221111 11111222 3467888888865

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=92.44  E-value=7.4  Score=36.22  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             eEEEecCCCCeEEEeeCCC-----eEEEEEccCCeeEEE--eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          158 LDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTF--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      ..+.|-|+|..+++-..||     .|..+.. +|-.-..  +....++.+...+|+-...      +......+.+.+|-
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~------vlav~~~n~~~lwt  322 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLST------VLAVAEGNLLKLWT  322 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHH------HHHHhhcceEEEEE
Confidence            4588999999999877554     3555542 2211111  1122334566677776655      34555677899998


Q ss_pred             CCCCcEEeeeeccCCCeeEEEECCC
Q 019482          231 ISTWNKIGHKRLLRKPASVLSISLD  255 (340)
Q Consensus       231 ~~~~~~~~~~~~~~~~i~~~~~s~~  255 (340)
                      ..+-.-.......-..+.-+.|+|.
T Consensus       323 tkNyhWYLK~e~~ip~~s~vkwhpe  347 (1243)
T COG5290         323 TKNYHWYLKVERQIPGISYVKWHPE  347 (1243)
T ss_pred             ccceEEEEEEeecCCCcceeeeccc
Confidence            7764422222222234566788884

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=92.14  E-value=1.2  Score=40.45  Aligned_cols=72  Identities=22%  Similarity=0.246  Sum_probs=44.7

Q ss_pred             cCCCeEEEccCCCcEEEEeCCC----Cceeec--------------ccc--------CccceeEEEecC----CCCeEEE
Q 019482          122 VDGSRFAAGGVDGHLRIMHWPS----LRIILD--------------EPK--------AHKSVLDMDFSL----DSEFLAT  171 (340)
Q Consensus       122 ~~~~~l~~~~~dg~i~~~d~~~----~~~~~~--------------~~~--------~~~~i~~~~~~~----~~~~l~~  171 (340)
                      ++...++.+..||.+.......    +.....              +..        .......+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666888888999888877654    111100              000        012345566665    6778999


Q ss_pred             eeCCCeEEEEEccCCeeEEEee
Q 019482          172 TSTDGSARIWKTEDGVAWTFLT  193 (340)
Q Consensus       172 ~~~d~~v~iwd~~~~~~~~~~~  193 (340)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999976653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=92.06  E-value=12  Score=36.07  Aligned_cols=92  Identities=10%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             ceEEEEECC-CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482          224 ALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV  302 (340)
Q Consensus       224 ~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  302 (340)
                      +.++.|++- .++.+..+....-+-.-.+..|-..++++| ....+++||+...++++.....+....|.++.+.  +..
T Consensus       912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~R  988 (1205)
T KOG1898|consen  912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GAR  988 (1205)
T ss_pred             CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceE
Confidence            446666643 334322222222222335666766666665 4568999999887776655433333456666553  344


Q ss_pred             EEEEecCCcEEEEEec
Q 019482          303 VLTASKEWGAMITKLT  318 (340)
Q Consensus       303 l~~~~~dg~i~iw~~~  318 (340)
                      ++.|..--.+..+.++
T Consensus       989 I~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen  989 IVVGDIQESVHFVRYR 1004 (1205)
T ss_pred             EEEeeccceEEEEEEe
Confidence            5555444445544444

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.95  E-value=0.84  Score=24.47  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=23.7

Q ss_pred             CCCCEEEEee-CCCcEEEEeccCceEeecccc
Q 019482          254 LDGKYLAMGS-KDGDICVVDVKKMEINHWSKR  284 (340)
Q Consensus       254 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~  284 (340)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            6777777765 478999999988887776544

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=91.95  E-value=1.1  Score=38.40  Aligned_cols=161  Identities=12%  Similarity=0.093  Sum_probs=93.1

Q ss_pred             cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE-EeecCCCC----cee-eEEEccCCCcceEEEEEecCCcce
Q 019482          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT-FLTRNSDE----KIE-LCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~-~~~~~~~~----~v~-~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      .....+..+-..|||+.+..-+. ..+.++++.+..... .+.....+    .|+ .+..-..|..     ++....||.
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~S-----LLv~~~dG~  291 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFS-----LLVVHEDGL  291 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCcee-----EEEEcCCCc
Confidence            33456778889999998877664 678888886543321 11111111    121 1111222332     566777777


Q ss_pred             EEEE-ECCCCc-----EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482          226 LAVY-DISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       226 i~i~-d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      |.-| |.+.+.     .++.++....++..+.-..+.+-+++-...|.+.++.....+.+... ..  -..+.-+++||.
T Consensus       292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~--~~~~~~~~~Sp~  368 (733)
T COG4590         292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RA--YQAPQLVAMSPN  368 (733)
T ss_pred             eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hh--hcCcceeeeCcc
Confidence            7665 444332     12222222234443333334566777788898888876555444322 11  235777899999


Q ss_pred             CeEEEEEecCCcEEEEEecCCCC
Q 019482          300 QRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       300 ~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      +.++++- +.|+++++.++.+..
T Consensus       369 ~~~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             cchheee-cCCceEEEEecCCCC
Confidence            9988876 457899999987653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.92  E-value=4.7  Score=31.09  Aligned_cols=112  Identities=10%  Similarity=0.143  Sum_probs=63.6

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---C---cEEEE
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---G---HLRIM  139 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~~~  139 (340)
                      +..++-.+. +.|+.+.....|.+|++.........      .+..-+.|..+.++..|+||++--.+   .   .+|+|
T Consensus        20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~------~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLC------TFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeE------EEcchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            334444332 44544455567999999843322111      12244789999999999999986432   2   56665


Q ss_pred             -eCCC----Cceee-cc---------------------ccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCC
Q 019482          140 -HWPS----LRIIL-DE---------------------PKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG  186 (340)
Q Consensus       140 -d~~~----~~~~~-~~---------------------~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~  186 (340)
                       |.+.    ...+. ++                     .....++.+++..| .|+ |+.|+ ++++.+|.+...
T Consensus        93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEE
Confidence             2211    11111 11                     11233567888888 455 55554 578999988643

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=91.40  E-value=1.1  Score=23.65  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=19.3

Q ss_pred             cCCCeeEEEECCCCCEEEEeeC-C--CcEEEE
Q 019482          243 LRKPASVLSISLDGKYLAMGSK-D--GDICVV  271 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~-d--g~i~i~  271 (340)
                      .........|||||+.|+..+. +  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3446678899999998887654 3  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.12  E-value=14  Score=34.88  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCC----------Cce--e-ec-------c-ccCccceeEEEecCC---CCe
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS----------LRI--I-LD-------E-PKAHKSVLDMDFSLD---SEF  168 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~----------~~~--~-~~-------~-~~~~~~i~~~~~~~~---~~~  168 (340)
                      -.|..+.++|+|++++..+..| |.|..+..          ++.  . ..       + ......|..+.|+|.   +..
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            4688899999999999888765 55554432          111  0 00       1 112237889999996   478


Q ss_pred             EEEeeCCCeEEEEEccCCe
Q 019482          169 LATTSTDGSARIWKTEDGV  187 (340)
Q Consensus       169 l~~~~~d~~v~iwd~~~~~  187 (340)
                      |+.-..|+++|+||+...+
T Consensus       164 l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEEecCCEEEEEecCCCC
Confidence            8888899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=90.94  E-value=7.2  Score=31.37  Aligned_cols=198  Identities=11%  Similarity=0.024  Sum_probs=123.6

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      .....++-.|||..-+++...+.|--.|..+++....-+.       .......+..-|||..-++-+.. -|.-.|-++
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg-------~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt  133 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG-------SGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT  133 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecC-------CCCCCceEEECCCCCeeEecCcc-eeEEecCcc
Confidence            4567788899999888888888888888888876544433       33455678888888766654333 455556555


Q ss_pred             Cceeec-c--ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          144 LRIILD-E--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       144 ~~~~~~-~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      .+...- +  ...........|.+.|++-+++.. |.---.|.. ...+..+........+.++..|+|..     -++.
T Consensus       134 ~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv-----wyas  206 (353)
T COG4257         134 LEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV-----WYAS  206 (353)
T ss_pred             cceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcE-----EEEe
Confidence            543221 1  112236788899999998888752 211111211 12233333334445778899999985     3444


Q ss_pred             CCcceEEEEECCCCcEEeeeecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          221 GDKALLAVYDISTWNKIGHKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      -.++.|...|...+... .+...   ......+--+|.|+.-++....+.+..||.....
T Consensus       207 lagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         207 LAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             ccccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            45666777777766432 22211   2234555567888888887778888888876644

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=90.83  E-value=13  Score=34.20  Aligned_cols=163  Identities=16%  Similarity=0.153  Sum_probs=86.0

Q ss_pred             ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee--EEEeecCCCC-ceeeEEEccCCC----cceEEEEEe-cCCcce
Q 019482          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDE-KIELCRFSKDGT----KPFLFCTVQ-RGDKAL  225 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~-~v~~~~~~~~~~----~~~~~~~~~-~~~d~~  225 (340)
                      .+.|-.+.|.++++.+++.-.+|.|.+||...+..  +..+...+.. .+++ .|-++..    ..+++.+.. .+..-.
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence            45788999999999999999999999999933222  1122222222 1222 3333322    223322222 344566


Q ss_pred             EEEEECC-CCcEEeeee---ccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeeccccccc--c--cceeeEEE
Q 019482          226 LAVYDIS-TWNKIGHKR---LLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL--G--TSIALVEF  296 (340)
Q Consensus       226 i~i~d~~-~~~~~~~~~---~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~--~~i~~~~~  296 (340)
                      .+++.+. ....+.++.   .+........|+- +|++...  .++.|.+|++...+..+.+...+.  .  ..+.++.-
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~  285 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP  285 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence            7788871 122222222   1222222223332 4544433  677899999988776655433210  1  12333322


Q ss_pred             ecCCeEEEEEecCCcEEEEEecCCC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      -...+.|++.  ++.|++.++....
T Consensus       286 ~s~nRvLLs~--~nkIyLld~~~~s  308 (670)
T PF10395_consen  286 PSPNRVLLSV--NNKIYLLDLKFES  308 (670)
T ss_pred             CCCCeEEEEc--CCEEEEEeehhhh
Confidence            1133555554  5679999987554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.81  E-value=1.6  Score=39.67  Aligned_cols=76  Identities=17%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             CCCCeEEEEecCCCEEEEEecC----ceeeeee-cccc-----CC---------CCCCCCCeEEEEEec----CCCeEEE
Q 019482           73 PSGDDFVCSTTNGGCKLFEVYG----GATDINL-LAKK-----MP---------PLQDAGPQKCLSFSV----DGSRFAA  129 (340)
Q Consensus        73 ~~~~~l~~~~~d~~i~iw~~~~----~~~~~~~-~~~~-----~~---------~~~~~~~v~~~~~~~----~~~~l~~  129 (340)
                      ++...++.+..||.+.......    +...... ....     ..         .......+..++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4667888888999888887764    1111110 0000     00         001224456666666    6779999


Q ss_pred             ccCCCcEEEEeCCCCceee
Q 019482          130 GGVDGHLRIMHWPSLRIIL  148 (340)
Q Consensus       130 ~~~dg~i~~~d~~~~~~~~  148 (340)
                      .+.|+++|+||+.+++++.
T Consensus       236 l~~D~~LRiW~l~t~~~~~  254 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLA  254 (547)
T ss_dssp             EETTSEEEEEETTTTCEEE
T ss_pred             EeCCCeEEEEECCCCeEEE
Confidence            9999999999999998844

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.81  E-value=4  Score=40.00  Aligned_cols=136  Identities=14%  Similarity=0.171  Sum_probs=82.1

Q ss_pred             CCCcEEEEeCCCCceeeccccCccceeEEE--------ecCCCCeEEEeeCCCeEEEEEccCCeeE-------EEeec-C
Q 019482          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMD--------FSLDSEFLATTSTDGSARIWKTEDGVAW-------TFLTR-N  195 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~d~~v~iwd~~~~~~~-------~~~~~-~  195 (340)
                      -|..+.+|+.+++.....+.+....|..+.        |.|.=++++.-+.--.|.++-+.-.+..       ..+.- -
T Consensus        97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~  176 (1311)
T KOG1900|consen   97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV  176 (1311)
T ss_pred             eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence            478899999998766665555544555443        2332234443333455666654321110       11111 1


Q ss_pred             CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC----CC------cE--------------Eeeee-ccCCCeeEE
Q 019482          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS----TW------NK--------------IGHKR-LLRKPASVL  250 (340)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~----~~------~~--------------~~~~~-~~~~~i~~~  250 (340)
                      .+..|.++....+|+      ++.+|.|+.  +|.+.    .+      +.              +..+. .+..+|..+
T Consensus       177 dg~~V~~I~~t~nGR------IF~~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi  248 (1311)
T KOG1900|consen  177 DGVSVNCITYTENGR------IFFAGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI  248 (1311)
T ss_pred             CCceEEEEEeccCCc------EEEeecCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence            234688888888888      566777774  44431    10      00              11122 345689999


Q ss_pred             EECCCCCEEEEeeCCCcEEEEeccC
Q 019482          251 SISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       251 ~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      +.......+.+-++.|.|.+||+..
T Consensus       249 ~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  249 TIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             EeccccceeeeeccCceEEEEEccC
Confidence            9988888999999999999999976

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.64  E-value=17  Score=35.15  Aligned_cols=174  Identities=17%  Similarity=0.192  Sum_probs=93.3

Q ss_pred             cEEEEeCCCCceeeccccCcc----ceeEEEecCCCC--eEEEee-----------CCCeEEEEEcc-CCeeEEEeecCC
Q 019482          135 HLRIMHWPSLRIILDEPKAHK----SVLDMDFSLDSE--FLATTS-----------TDGSARIWKTE-DGVAWTFLTRNS  196 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~--~l~~~~-----------~d~~v~iwd~~-~~~~~~~~~~~~  196 (340)
                      .|++.|..+++.+..+....+    .+..+.|+....  +++++.           .+|.++.|++- .++.+. +....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~le-llh~T  932 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLE-LLHKT  932 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceee-eeecc
Confidence            478888777765544332222    466677765332  344433           23457777653 344222 22111


Q ss_pred             CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEec-
Q 019482          197 DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDV-  273 (340)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~-  273 (340)
                      .-+-.-.+..|-..+      +.++....+++||+.+.+.++....  ....|+.+.+  .+..+++|...-.+.++-. 
T Consensus       933 ~~~~~v~Ai~~f~~~------~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGR------VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred             CCCccceEEeccCCE------EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEe
Confidence            111223455666653      4445677899999988776544332  2344555555  5667888876666665444 


Q ss_pred             -cCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          274 -KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       274 -~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                       ...+.+... .......|+.+.+- |...+|.+..=|.+  |-++.|.
T Consensus      1005 ~~~n~l~~fa-dD~~pR~Vt~~~~l-D~~tvagaDrfGNi--~~vR~P~ 1049 (1205)
T KOG1898|consen 1005 REDNQLIVFA-DDPVPRHVTALELL-DYDTVAGADRFGNI--AVVRIPP 1049 (1205)
T ss_pred             cCCCeEEEEe-CCCccceeeEEEEe-cCCceeeccccCcE--EEEECCC
Confidence             344444332 22223466776665 44557777665655  4444444

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=90.03  E-value=3.7  Score=37.07  Aligned_cols=82  Identities=11%  Similarity=0.076  Sum_probs=51.0

Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCCcE-EEEecc---Cce------EeecccccccccceeeEEEecCCeEEEEE
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDI-CVVDVK---KME------INHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i-~i~d~~---~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  306 (340)
                      ++.+-.|......+.|+|+++.+.++...+.. .++-+.   ...      -+..+..+.....+..++|+.|.++++..
T Consensus       485 vqh~vahs~~gv~~Ef~~~~~l~lSad~~e~ef~~f~V~Ph~~wsslaav~hly~l~rG~TsaKv~~~afs~dsrw~A~~  564 (788)
T KOG2109|consen  485 VQHYVAHSDPGVYIEFSPDQRLVLSADANENEFNIFLVMPHATWSSLAAVQHLYKLNRGSTSAKVVSTAFSEDSRWLAIT  564 (788)
T ss_pred             eEEEeeccCccceeeecccccceecccccccccceEEeecccccHHHhhhhhhhhccCCCccceeeeeEeecchhhhhhh
Confidence            34455566678889999999999988765543 333322   211      12222223333468889999999888776


Q ss_pred             ecCCcEEEEEec
Q 019482          307 SKEWGAMITKLT  318 (340)
Q Consensus       307 ~~dg~i~iw~~~  318 (340)
                      ..-++-.|+...
T Consensus       565 t~~~TthVfk~h  576 (788)
T KOG2109|consen  565 TNHATTHVFKVH  576 (788)
T ss_pred             hcCCceeeeeec
Confidence            665665565543

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=90.00  E-value=10  Score=31.73  Aligned_cols=64  Identities=6%  Similarity=0.050  Sum_probs=32.3

Q ss_pred             CCCeEEEccCC-----CcEEEEeCCCCcee---eccccCccce--eEEEecCCCCeEEEeeC-----CCeEEEEEccCCe
Q 019482          123 DGSRFAAGGVD-----GHLRIMHWPSLRII---LDEPKAHKSV--LDMDFSLDSEFLATTST-----DGSARIWKTEDGV  187 (340)
Q Consensus       123 ~~~~l~~~~~d-----g~i~~~d~~~~~~~---~~~~~~~~~i--~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~~~  187 (340)
                      ++..++.|+.+     ..+..+|+.+.+..   ........+.  .+++. -++++.+.|+.     ...+..||+++.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45566667654     34667777665421   1111111111  12222 24666666664     2468888887653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=89.82  E-value=10  Score=31.25  Aligned_cols=143  Identities=13%  Similarity=0.025  Sum_probs=0.0

Q ss_pred             eEEEEEccCCeeEEEeecC-----CCCceeeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-------
Q 019482          177 SARIWKTEDGVAWTFLTRN-----SDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-------  243 (340)
Q Consensus       177 ~v~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------  243 (340)
                      +|.+||+++++.++++...     ....+..+.+.. ++..---++.++-...+-|.++|+.+++.-+....+       
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc


Q ss_pred             ------------CCCeeEEEECC---CCCEEEEeeCCCcEEEEeccCceEeeccccccc------------ccceeeEEE
Q 019482          244 ------------RKPASVLSISL---DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL------------GTSIALVEF  296 (340)
Q Consensus       244 ------------~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------~~~i~~~~~  296 (340)
                                  ...+..++.+|   +++.|+.....+ -++|.+++............            ......++.
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~  193 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI  193 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE


Q ss_pred             ecCCeEEEEEecCCcEEEEEecCC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      +++|.++++--..+.|..|+...+
T Consensus       194 D~~G~ly~~~~~~~aI~~w~~~~~  217 (287)
T PF03022_consen  194 DPNGNLYFTDVEQNAIGCWDPDGP  217 (287)
T ss_dssp             ETTTEEEEEECCCTEEEEEETTTS
T ss_pred             CCCCcEEEecCCCCeEEEEeCCCC

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.79  E-value=4  Score=26.59  Aligned_cols=53  Identities=21%  Similarity=0.127  Sum_probs=33.8

Q ss_pred             eeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          262 GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       262 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +..+|.+.-||..+++....+...   .-.+.+++++|+.+++.+- -+.-+|+.+-
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L---~fpNGVals~d~~~vlv~E-t~~~Ri~ryw   85 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGL---YFPNGVALSPDESFVLVAE-TGRYRILRYW   85 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEE---SSEEEEEE-TTSSEEEEEE-GGGTEEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhCC---CccCeEEEcCCCCEEEEEe-ccCceEEEEE
Confidence            345688999999998865544332   3578999999999777663 3444555543

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PLN02193 nitrile-specifier protein

Probab=89.77  E-value=14  Score=32.92  Aligned_cols=148  Identities=10%  Similarity=0.058  Sum_probs=69.2

Q ss_pred             CCCeEEEccCC-----CcEEEEeCCCCceeecccc---Cc-cceeEEEecCCCCeEEEeeCCC-----eEEEEEccCCee
Q 019482          123 DGSRFAAGGVD-----GHLRIMHWPSLRIILDEPK---AH-KSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVA  188 (340)
Q Consensus       123 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~---~~-~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~  188 (340)
                      ++++.+.|+.+     ..+..||+.+.+-......   .. ..-.++. .-++++++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45566666654     3588889877553321111   11 1111222 22466777776543     467788766542


Q ss_pred             EEEeecC---CCCce-eeEEEccCCCcceEEEEEecCCc----ceEEEEECCCCcEEeeeec---c-CCCeeEEEECCCC
Q 019482          189 WTFLTRN---SDEKI-ELCRFSKDGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKRL---L-RKPASVLSISLDG  256 (340)
Q Consensus       189 ~~~~~~~---~~~~v-~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~---~-~~~i~~~~~s~~~  256 (340)
                      . .+...   ..... ..+. .-+++.     .+.++.+    ..+.+||+.+.+=......   . .....++ ..-++
T Consensus       307 ~-~~~~~~~~~~~R~~~~~~-~~~gki-----yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~  378 (470)
T PLN02193        307 F-HCSTPGDSFSIRGGAGLE-VVQGKV-----WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGK  378 (470)
T ss_pred             E-eCCCCCCCCCCCCCcEEE-EECCcE-----EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECC
Confidence            2 11110   00000 1111 123442     2222322    5688999887542211110   1 1111122 22356


Q ss_pred             CEEEEeeCC--------------CcEEEEeccCceEe
Q 019482          257 KYLAMGSKD--------------GDICVVDVKKMEIN  279 (340)
Q Consensus       257 ~~l~~~~~d--------------g~i~i~d~~~~~~~  279 (340)
                      ++++.|+.+              +.+.+||+.+.+-.
T Consensus       379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~  415 (470)
T PLN02193        379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWE  415 (470)
T ss_pred             EEEEECCccCCccccccCccceeccEEEEEcCcCEEE
Confidence            777777753              24788998876544

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=89.52  E-value=20  Score=34.23  Aligned_cols=69  Identities=16%  Similarity=0.076  Sum_probs=50.8

Q ss_pred             CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc----cccc-------------cccceeeEEEecCCeEEEEEe
Q 019482          245 KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS----KRLH-------------LGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       245 ~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~-------------~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      ..|.++....-+.+++..-.||+|.++|..+.+.+...    ....             ...++..++|||.+..++.-.
T Consensus       260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~  339 (753)
T PF11635_consen  260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID  339 (753)
T ss_pred             CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence            45777777777889999999999999998886554333    1100             011344688999999999999


Q ss_pred             cCCcEE
Q 019482          308 KEWGAM  313 (340)
Q Consensus       308 ~dg~i~  313 (340)
                      .+|.+.
T Consensus       340 ~~~~~~  345 (753)
T PF11635_consen  340 EDGKTK  345 (753)
T ss_pred             cCCCce
Confidence            999977

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.48  E-value=5.8  Score=28.02  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=68.0

Q ss_pred             EEEecCCCCeEEEeeCCCeEEEEEccCC--------eeEEEeecCCCCceeeEEEcc---CCCcceEEEEEecCCcceEE
Q 019482          159 DMDFSLDSEFLATTSTDGSARIWKTEDG--------VAWTFLTRNSDEKIELCRFSK---DGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~d~~i~  227 (340)
                      .-.|......|+.++.-++|.|++....        ..+..+.  ....|++++-.+   +..+-    ++.-+....+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D----~LliGt~t~ll   76 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRD----CLLIGTQTSLL   76 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcC----EEEEeccceEE
Confidence            3456666667888888899999987633        2334443  233567665433   33332    23334567799


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECC---CCCEEEEeeCCCcEEEEeccCceEe
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISL---DGKYLAMGSKDGDICVVDVKKMEIN  279 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~  279 (340)
                      .||+.....+..... ...++++.+-.   ...-++..+.+..|.=||....+..
T Consensus        77 aYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   77 AYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             EEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence            999998776544333 34577776632   1223444445677888887665544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.35  E-value=13  Score=31.89  Aligned_cols=107  Identities=13%  Similarity=0.078  Sum_probs=63.7

Q ss_pred             eEEEeeCCCeEEEEEccCCeeEEEeecCC-CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-C
Q 019482          168 FLATTSTDGSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-K  245 (340)
Q Consensus       168 ~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~  245 (340)
                      .+..+..+|.+.-.|.++++.+-...... ...+..-.+..+|+      ++.++.++.+..+|.++++.+-...... .
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~------i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~  143 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK------IYVGSWDGKLYALDASTGTLVWSRNVGGSP  143 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe------EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence            34444667888888887777553222111 12233333444777      6888888899999999898876666555 1


Q ss_pred             CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       246 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      .+.....-.++ .+..++.++.+.-.|..+++..-.
T Consensus       144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~  178 (370)
T COG1520         144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWT  178 (370)
T ss_pred             EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEE
Confidence            11111122233 344444678888888887776543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.28  E-value=2.2  Score=22.80  Aligned_cols=40  Identities=10%  Similarity=-0.060  Sum_probs=27.3

Q ss_pred             CCCCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCceeeEEE
Q 019482          164 LDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRF  205 (340)
Q Consensus       164 ~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~  205 (340)
                      |++++|+++. .+++|.++|..+++.+..+...  .....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEe
Confidence            5677666554 5789999999988888777643  22444444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.25  E-value=12  Score=33.22  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=50.6

Q ss_pred             CeEEEEEecCCCeEEEccCCCcEEEEe---------CCCCceeec----------c-ccCccceeEEEecCCC---CeEE
Q 019482          114 PQKCLSFSVDGSRFAAGGVDGHLRIMH---------WPSLRIILD----------E-PKAHKSVLDMDFSLDS---EFLA  170 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d---------~~~~~~~~~----------~-~~~~~~i~~~~~~~~~---~~l~  170 (340)
                      .|..+..++.|..++.++.+|.+.++=         +++++....          + ...+-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            567788899999998888888655542         123322110          1 1111256788999975   5677


Q ss_pred             EeeCCCeEEEEEccCCeeE
Q 019482          171 TTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       171 ~~~~d~~v~iwd~~~~~~~  189 (340)
                      .-+.|..+|+||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            7778999999999765544

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.15  E-value=4.7  Score=39.55  Aligned_cols=143  Identities=13%  Similarity=0.236  Sum_probs=79.9

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEE--------cCCCCeEEEEecCCCEEEEEecCceeee--ee
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV--------NPSGDDFVCSTTNGGCKLFEVYGGATDI--NL  101 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~~~~~d~~i~iw~~~~~~~~~--~~  101 (340)
                      +.||.+.+|+++.... .       ..+.+-...|..+..        .|.=++++..+.--.|.++-+.-.+...  ..
T Consensus        96 TiDn~L~lWny~~~~e-~-------~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~  167 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNE-L-------AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI  167 (1311)
T ss_pred             EeCCeEEEEEcCCCCc-c-------ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence            3788899999986332 2       123333334444433        2322344444444446676654332211  11


Q ss_pred             ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC----CCC---c-e----------------eeccc-cCccc
Q 019482          102 LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW----PSL---R-I----------------ILDEP-KAHKS  156 (340)
Q Consensus       102 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~----~~~---~-~----------------~~~~~-~~~~~  156 (340)
                      .......-.....|.|+....+|+.+++| .||  .+|.+    ..+   + +                +..+. .+.++
T Consensus       168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp  244 (1311)
T KOG1900|consen  168 FNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP  244 (1311)
T ss_pred             cccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence            11110001134678999988888766665 566  44443    110   0 0                11223 34458


Q ss_pred             eeEEEecCCCCeEEEeeCCCeEEEEEccC
Q 019482          157 VLDMDFSLDSEFLATTSTDGSARIWKTED  185 (340)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~  185 (340)
                      |..+++...-+.+.+-+..++|.+||+..
T Consensus       245 I~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  245 IRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeEeccccceeeeeccCceEEEEEccC
Confidence            99999988778899999999999999975

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.25  E-value=2.5  Score=22.24  Aligned_cols=29  Identities=28%  Similarity=0.473  Sum_probs=19.1

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-cC--CCEEEE
Q 019482           62 SEGDPMTIAVNPSGDDFVCST-TN--GGCKLF   90 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~-~d--~~i~iw   90 (340)
                      ....-....|+|||+.|+-++ .+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344577899999999887554 44  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.85  E-value=16  Score=31.01  Aligned_cols=41  Identities=15%  Similarity=0.011  Sum_probs=20.5

Q ss_pred             cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      .+.+||..+.+-..... .. ...-...+..-++++++.|+.+
T Consensus       291 ~~e~yd~~~~~W~~~~~-lp-~~~~~~~~~~~~~~iyv~GG~~  331 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGK-LP-QGLAYGVSVSWNNGVLLIGGEN  331 (346)
T ss_pred             EeeEEEecCCcccccCC-CC-CCceeeEEEEcCCEEEEEeccC
Confidence            46688877654322111 11 1111222334577888888765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=87.79  E-value=36  Score=35.04  Aligned_cols=58  Identities=7%  Similarity=0.177  Sum_probs=39.2

Q ss_pred             CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecC
Q 019482           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG   94 (340)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~   94 (340)
                      ..+.++..++......+.......+.+-.....+|.++++  .|+++..+|.++.=++..
T Consensus       460 q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  460 QTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             cceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCCCCEEeccccc
Confidence            3468888776655443333445556666667888888766  688888899887777654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=87.35  E-value=22  Score=32.10  Aligned_cols=186  Identities=9%  Similarity=0.094  Sum_probs=0.0

Q ss_pred             ceeEEeeeeec--CCCc------cEEEEcCCCCcccCCCceEEEEeCCCCCCcccC--CeeeEEEecCCCCeeEEEEcCC
Q 019482            5 GTVTCGSWIKR--PENV------NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS--PLVTYVFDESEGDPMTIAVNPS   74 (340)
Q Consensus         5 ~~v~~~~w~~~--~~~~------~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~   74 (340)
                      +||..++..+.  ....      .++++.|    .+.++.+++....-..     .  ......+.+ -..++.+....+
T Consensus       300 ~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG----~g~~gsL~~lr~Gi~~-----~~~~~~~~~l~~-v~~iW~l~~~~~  369 (504)
T PF10433_consen  300 GPIVDFCVVDSSNSGQPSNPSSDQLVACSG----AGKRGSLRILRNGIGI-----EGLELASSELPG-VTGIWTLKLSSS  369 (504)
T ss_dssp             -SEEEEEEE-TSSSSS-------EEEEEES----SGGG-EEEEEEESBEE-----E--EEEEEEEST-EEEEEEE-SSSS
T ss_pred             CCccceEEeccccCCCCcccccceEEEEEC----cCCCCcEEEEeccCCc-----eeeeeeccCCCC-ceEEEEeeecCC


Q ss_pred             CCeEEEEecCCCEEEEEe---cCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482           75 GDDFVCSTTNGGCKLFEV---YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  151 (340)
                      +...+..+....-+++.+   +..+..... ... ........+.+-.+.  +..++=....+ |++.+...++......
T Consensus       370 ~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~-~~~-~f~~~~~Tl~~~~~~--~~~ivQVt~~~-i~l~~~~~~~~~~~w~  444 (504)
T PF10433_consen  370 DHSYLVLSFPNETRVLQISEGDDGEEVEEV-EED-GFDTDEPTLAAGNVG--DGRIVQVTPKG-IRLIDLEDGKLTQEWK  444 (504)
T ss_dssp             SBSEEEEEESSEEEEEEES----SSEEEEE-----TS-SSS-EEEEEEET--TTEEEEEESSE-EEEEESSSTSEEEEEE
T ss_pred             CceEEEEEcCCceEEEEEecccCCcchhhh-hhc-cCCCCCCCeEEEEcC--CCeEEEEecCe-EEEEECCCCeEEEEEe


Q ss_pred             cCcc-ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC----CCceeeEEEcc
Q 019482          152 KAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS----DEKIELCRFSK  207 (340)
Q Consensus       152 ~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~  207 (340)
                      ...+ .|.+.+.+  +.+++.+..++.+..+.++............    ...+.|+...|
T Consensus       445 ~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  445 PPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             -TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             CCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC

...

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=87.07  E-value=22  Score=31.82  Aligned_cols=145  Identities=8%  Similarity=-0.052  Sum_probs=65.9

Q ss_pred             CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC--CceeeEEEccCCC
Q 019482          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD--EKIELCRFSKDGT  210 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~  210 (340)
                      .+...++|. .|.....+.........+...++|.+++...  ..++.+|+. |+.+........  ..=..+...|+|.
T Consensus       127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn  202 (477)
T PF05935_consen  127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN  202 (477)
T ss_dssp             EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred             CceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence            445666663 3444333322222222266778898776655  788888874 666555442221  1124577788887


Q ss_pred             cceEEEE--------EecCCcceEEEEECCCCcEEeeeecc----------------------C-----CCeeEEEECC-
Q 019482          211 KPFLFCT--------VQRGDKALLAVYDISTWNKIGHKRLL----------------------R-----KPASVLSISL-  254 (340)
Q Consensus       211 ~~~~~~~--------~~~~~d~~i~i~d~~~~~~~~~~~~~----------------------~-----~~i~~~~~s~-  254 (340)
                      .+.+...        -.......|..+| .+|+.+......                      .     -.++++.+.+ 
T Consensus       203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~  281 (477)
T PF05935_consen  203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS  281 (477)
T ss_dssp             EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred             EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence            6433210        0011123355556 556554332110                      0     1378899988 


Q ss_pred             CCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          255 DGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       255 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      ++.+++++-.-..|...|.++++....+
T Consensus       282 dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  282 DDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             TTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             CCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence            5555555555558888898887766443

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=86.99  E-value=14  Score=29.46  Aligned_cols=141  Identities=13%  Similarity=0.061  Sum_probs=76.0

Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-C--CeEEEEEccC---CeeEEEee--cCCCCceeeEEEcc
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D--GSARIWKTED---GVAWTFLT--RNSDEKIELCRFSK  207 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~v~iwd~~~---~~~~~~~~--~~~~~~v~~~~~~~  207 (340)
                      -.+||+.+++..........-..+-.+-+||+++.+|+. +  ..+++++...   ........  ......-.+...-|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            467888877643322222222334467789999999874 2  3588887644   11111110  01222344566678


Q ss_pred             CCCcceEEEEEecCCc-ceEEEEECCCC--cEEee--ee-----ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          208 DGTKPFLFCTVQRGDK-ALLAVYDISTW--NKIGH--KR-----LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d-~~i~i~d~~~~--~~~~~--~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      ||+.     ++.++.. ....+|..+..  .....  +.     ....--..+...|+|++++.+..+  -.|||..+.+
T Consensus       128 DG~v-----lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~  200 (243)
T PF07250_consen  128 DGRV-----LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNT  200 (243)
T ss_pred             CCCE-----EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCe
Confidence            8886     4444444 34555554321  11111  11     011122356678999999988764  5677888887


Q ss_pred             Eeeccc
Q 019482          278 INHWSK  283 (340)
Q Consensus       278 ~~~~~~  283 (340)
                      .++.+.
T Consensus       201 v~~~lP  206 (243)
T PF07250_consen  201 VVRTLP  206 (243)
T ss_pred             EEeeCC
Confidence            765554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=86.90  E-value=23  Score=31.85  Aligned_cols=235  Identities=11%  Similarity=0.019  Sum_probs=0.0

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ...|.++.+...|. +..|+.|| +..||..+++.......      +...+|..+.-+-.+ .+.+|+.+| +++.+.+
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~------~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~  233 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASP------PLDKAINALIADVQG-RLWVGTDQG-VYLQEAE  233 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCC------cchhhHHHHHHHhcC-cEEEEeccc-eEEEchh


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCce-eeEEEccCCCcceEEEEEecC
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKI-ELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      ..+..............+.-......+-.|+..|-.+.--.+.+-.....+.++.-.- .++....+|.      +-.+.
T Consensus       234 G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs------LWv~t  307 (671)
T COG3292         234 GWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS------LWVGT  307 (671)
T ss_pred             hccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC------Eeeec


Q ss_pred             CcceEEEEECCCCcEEeeeeccCCCeeEEEECC--CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      .++.+++-+-.-.............+...+..|  .+..+-....-|.+.+-+-.++...+...... +..|+.+.+..+
T Consensus       308 ~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~R-g~nit~~~~d~~  386 (671)
T COG3292         308 YGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLR-GMNITTTLEDSR  386 (671)
T ss_pred             cCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeecc-ccccchhhhccC


Q ss_pred             CeEEEEEecCCcEEE
Q 019482          300 QRVVLTASKEWGAMI  314 (340)
Q Consensus       300 ~~~l~~~~~dg~i~i  314 (340)
                      |..-+..-.+|-.++
T Consensus       387 g~lWlgs~q~GLsrl  401 (671)
T COG3292         387 GRLWLGSMQNGLSRL  401 (671)
T ss_pred             CcEEEEecccchhhh

>PRK13613 lipoprotein LpqB; Provisional

Probab=86.86  E-value=26  Score=32.37  Aligned_cols=191  Identities=14%  Similarity=0.120  Sum_probs=98.3

Q ss_pred             CeEEEEEecCCCeEEEccCCC-cEEEEeCCCCce----eeccccCccceeEEEecCCCCeEEEeeC--CC--eEEEEEcc
Q 019482          114 PQKCLSFSVDGSRFAAGGVDG-HLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST--DG--SARIWKTE  184 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~--~v~iwd~~  184 (340)
                      .+.+++.++++..++....++ .+++..+..+..    ...... ...++.-.|.+++ .+-+...  ++  .+++..- 
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~-~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA-DGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec-cCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-
Confidence            577889999998888777655 455554433332    111111 2245666777776 4444422  22  2555543 


Q ss_pred             CCeeEEEee-cCC-CCceeeEEEccCCCcceEEEEEecCCcceEEEEEC---CCCc-EEe---eeeccCCCeeEEEECCC
Q 019482          185 DGVAWTFLT-RNS-DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI---STWN-KIG---HKRLLRKPASVLSISLD  255 (340)
Q Consensus       185 ~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~---~~~~-~~~---~~~~~~~~i~~~~~s~~  255 (340)
                      .++... +. ... ...|..+..|+||....+  +......++|.+=-+   ..+. .+.   .+...-..+.+++|..+
T Consensus       441 ~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAv--v~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~  517 (599)
T PRK13613        441 DGEPVE-VRTPELDGHRVVAVRVARDGVRVAL--IVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGD  517 (599)
T ss_pred             CCcEEE-eeccccCCCEeEEEEECCCccEEEE--EEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCC
Confidence            444422 21 112 237999999999998543  233333445543332   1222 111   11112235889999999


Q ss_pred             CCEEEEee-CC--CcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEecCCcE
Q 019482          256 GKYLAMGS-KD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGA  312 (340)
Q Consensus       256 ~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i  312 (340)
                      +.+++.+. .+  ..+.+.++......... ... -..+..++-..+.+ .++.+..++.|
T Consensus       518 ~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~-~~~-v~~~~~ia~~~~~~~~~v~~~~~~~v  576 (599)
T PRK13613        518 SQLVVLGREEGGVQQARYVQVDGSTPPASA-PAA-VTGVESITASEDERLPLVAGTSEDGI  576 (599)
T ss_pred             CEEEEEeccCCCCcceEEEecCCcCccccc-ccC-CCCeeEEEecCCCCceEEEEecCCCe
Confidence            88877553 23  33444444433222111 111 23566666666655 45553455554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=86.83  E-value=13  Score=28.84  Aligned_cols=142  Identities=11%  Similarity=0.152  Sum_probs=75.6

Q ss_pred             eEEEeeCCCeEEEEEccCC--eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc---eEEEE---ECC--CCcEE
Q 019482          168 FLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA---LLAVY---DIS--TWNKI  237 (340)
Q Consensus       168 ~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~---~i~i~---d~~--~~~~~  237 (340)
                      .|+.+.....|.+|++.+.  +....+.  .-+.|..+.++..|+++.  .+-.-....   .+++|   +..  ...++
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlv--TlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLV--TLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEE--EEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            3333345678999999833  3444444  346799999999999732  222222223   55654   221  11111


Q ss_pred             e-eeec---------------------cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE-ee---c------cccc
Q 019482          238 G-HKRL---------------------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI-NH---W------SKRL  285 (340)
Q Consensus       238 ~-~~~~---------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~---~------~~~~  285 (340)
                      . .+-+                     ...+..+++..|-..-|++|+ ++.+.+|.+..... ..   .      +...
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~  184 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH  184 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence            1 0111                     124567788888544455554 56799998865443 11   1      1111


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      +.+-....+++.  +.++|..+.. .+++.++
T Consensus       185 ~~~~~p~~v~ic--~~yiA~~s~~-ev~Vlkl  213 (215)
T PF14761_consen  185 IDNFKPTQVAIC--EGYIAVMSDL-EVLVLKL  213 (215)
T ss_pred             ecCceEEEEEEE--eeEEEEecCC-EEEEEEE
Confidence            112234555554  4677777654 6677665

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=86.43  E-value=20  Score=30.72  Aligned_cols=193  Identities=11%  Similarity=0.093  Sum_probs=104.2

Q ss_pred             cCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe----cCCCCe--EEEee-CC---CeEEEEEccCC-eeEE
Q 019482          122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF----SLDSEF--LATTS-TD---GSARIWKTEDG-VAWT  190 (340)
Q Consensus       122 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~----~~~~~~--l~~~~-~d---~~v~iwd~~~~-~~~~  190 (340)
                      |...+++....++-+.+||+.. +.++.+..  +.++.+..    .-+|+.  |+.++ ++   .+|++|.+... ..+.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS--EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCC-cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            3455777777888899999864 55554432  22333322    113443  44444 32   47999988631 2233


Q ss_pred             Eeec------CCCCceeeEEEc--cCCCcceEEEEEecCCcceEEEEECC---CC----cEEeeeeccCCCeeEEEECCC
Q 019482          191 FLTR------NSDEKIELCRFS--KDGTKPFLFCTVQRGDKALLAVYDIS---TW----NKIGHKRLLRKPASVLSISLD  255 (340)
Q Consensus       191 ~~~~------~~~~~v~~~~~~--~~~~~~~~~~~~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~i~~~~~s~~  255 (340)
                      .+..      .....++.+++-  |....++   .+....+|.+..|.+.   .+    +.++.+.. ...+..+.....
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~y---a~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe  218 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALY---AFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDE  218 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EE---EEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETT
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEE---EEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecc
Confidence            3221      111235666663  3322222   4455566777766653   33    24555554 346888888888


Q ss_pred             CCEEEEeeCCCcEEEEeccC-----ceEeecccccccccceeeEEEec--CC--eEEEEEecCCcEEEEEecCCC
Q 019482          256 GKYLAMGSKDGDICVVDVKK-----MEINHWSKRLHLGTSIALVEFCP--TQ--RVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       256 ~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~i~~~~~~~--~~--~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ..+|+.+-++--|.-|+.+.     ++.+......+....|..+++-.  ++  -+|++.-.+++..||+...+.
T Consensus       219 ~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~  293 (381)
T PF02333_consen  219 TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN  293 (381)
T ss_dssp             TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred             cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence            88999999988788887753     22222222223345788888754  33  345555567889999987654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02153 epithiospecifier protein

Probab=85.83  E-value=20  Score=30.28  Aligned_cols=65  Identities=9%  Similarity=0.070  Sum_probs=33.5

Q ss_pred             CCCeEEEccCC-----CcEEEEeCCCCceee--cccc---CccceeEEEecCCCCeEEEeeCC-----------CeEEEE
Q 019482          123 DGSRFAAGGVD-----GHLRIMHWPSLRIIL--DEPK---AHKSVLDMDFSLDSEFLATTSTD-----------GSARIW  181 (340)
Q Consensus       123 ~~~~l~~~~~d-----g~i~~~d~~~~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----------~~v~iw  181 (340)
                      +++.++.|+.+     ..+.+||+.+.+-..  .+..   ........+..-++++++.|+.+           ..+.+|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence            45666777653     357888987654321  1100   11111112222356677777653           247788


Q ss_pred             EccCCe
Q 019482          182 KTEDGV  187 (340)
Q Consensus       182 d~~~~~  187 (340)
                      |.++.+
T Consensus       165 d~~~~~  170 (341)
T PLN02153        165 NIADGK  170 (341)
T ss_pred             ECCCCe
Confidence            887643

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.67  E-value=39  Score=33.41  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=27.9

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCce
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA   96 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~   96 (340)
                      .....++|+|....+|.+..+|.|+++-...-+
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceE
Confidence            456789999999999999999999999765444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-06
2h9l_A	329	Wdr5delta23 Length = 329		3e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		9e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		9e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-05

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 111 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 225
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 226 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 281
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 282 ISTACHPTENIIASAALE 299

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 117 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 231
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 232 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 287
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 288 ISTACHPTENIIASAALE 305

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 118 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 232
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 233 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 288
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 289 ISTACHPTENIIASAALE 306

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 248
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 249 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 304
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 305 ISTACHPTENIIASAALE 322

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 283 ISTACHPTENIIASAALE 300

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 250
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 251 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 306
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 307 ISTACHPTENIIASAALE 324

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 113 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 227
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 228 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 283
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 284 ISTACHPTENIIASAALE 301

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 108 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 222
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 223 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 278
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 279 ISTACHPTENIIASAALE 296

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 226
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 227 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 282
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 283 ISTACHPTENIIASAALE 300

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 129 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 243
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 244 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 299
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 300 ISTACHPTENIIASAALE 317

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    + + +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNLVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    +   +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDN----TLKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
           C +F+   +   +G  D  +RI    +   +   P     V  + F+ D   + ++S DG
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK 236
             RIW T  G     L  + +  +   +FS +G K  L  T+       L ++D S    
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDND----LKLWDYSKGKC 229
Query: 237 I----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA 292
           +    GHK       +  S++  GK++  GS+D  + + +++  EI    ++L   T + 
Sbjct: 230 LKTYTGHKNEKYCIFANFSVT-GGKWIVSGSEDNMVYIWNLQTKEI---VQKLQGHTDVV 285
Query: 293 LVEFC-PTQRVVLTASKE 309
           +   C PT+ ++ +A+ E
Sbjct: 286 ISTACHPTENIIASAALE 303

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
            S DG    +G  DG LR+    +           K VL + FS D+  + + S D + +
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
           +W T     +T    +  E +   RFS + + P +   V  G   L+ V++++      N
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 187
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
            IGH   L    + +++S DG   A G KDG   + D+ +
Sbjct: 188 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 223

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 120 FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSAR 179
            S DG    +G  DG LR+    +           K VL + FS D+  + + S D + +
Sbjct: 94  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW----N 235
           +W T     +T    +  E +   RFS + + P +   V  G   L+ V++++      N
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII---VSCGWDKLVKVWNLANCKLKTN 210
Query: 236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK 275
            IGH   L    + +++S DG   A G KDG   + D+ +
Sbjct: 211 HIGHTGYL----NTVTVSPDGSLCASGGKDGQAMLWDLNE 246

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 112/299 (37%), Gaps = 43/299 (14%)
Query: 34  PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
           P+++++   +P+T+ VY    +     + EGD                    G    E  
Sbjct: 561 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 598
Query: 94  GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
              T  NL    + P  DA    C  FS DG R A+ G D  L++    +   +LD    
Sbjct: 599 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 656
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
              VL   FS D  ++AT S D   +IW +  G        +S E++  C F+       
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 715
Query: 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV--LSISLDGKYLAMGSKDGDICVV 271
           L       +   L ++D++   K     +     SV     S D + LA  S DG + + 
Sbjct: 716 L---ATGSNDFFLKLWDLN--QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Query: 272 DVK----KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL 326
           DV+    +  IN   KR  L +     E  P    V+     W A   K+ V A  K L
Sbjct: 771 DVRSANERKSIN--VKRFFLSS-----EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 112/299 (37%), Gaps = 43/299 (14%)
Query: 34  PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY 93
           P+++++   +P+T+ VY    +     + EGD                    G    E  
Sbjct: 568 PNIVQLGLCEPETSEVYRQAKLQA---KQEGDT-------------------GRLYLEWI 605
Query: 94  GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA 153
              T  NL    + P  DA    C  FS DG R A+ G D  L++    +   +LD    
Sbjct: 606 NKKTIKNLSRLVVRPHTDAVYHAC--FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAH 663
Query: 154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF 213
              VL   FS D  ++AT S D   +IW +  G        +S E++  C F+       
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS-EQVNCCHFTNKSNHLL 722
Query: 214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV--LSISLDGKYLAMGSKDGDICVV 271
           L       +   L ++D++   K     +     SV     S D + LA  S DG + + 
Sbjct: 723 L---ATGSNDFFLKLWDLN--QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Query: 272 DVK----KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL 326
           DV+    +  IN   KR  L +     E  P    V+     W A   K+ V A  K L
Sbjct: 778 DVRSANERKSIN--VKRFFLSS-----EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	100.0
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.97
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.96
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.95
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.95
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.94
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.92
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.92
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.9
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.9
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.89
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.89
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.88
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.87
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.85
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.83
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.83
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.83
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.81
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.81
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.81
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.8
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.8
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.76
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.75
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.75
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.74
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.74
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.74
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.73
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.72
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.72
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.7
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.69
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.66
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.65
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.64
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.64
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.62
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.62
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.61
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.61
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.57
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.51
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.47
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.46
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.46
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.42
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.42
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.39
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.39
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.39
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.38
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.37
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.33
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.33
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.3
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.28
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.27
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.27
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.27
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.25
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.22
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.2
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.19
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.15
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.13
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.12
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.09
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.05
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.02
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.01
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.97
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.96
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.95
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.95
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.93
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.93
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.93
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.92
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.92
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.9
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.88
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.87
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.86
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.85
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.82
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.79
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.79
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.79
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.75
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.71
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.69
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.64
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.61
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.6
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.59
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.56
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.48
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.48
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.46
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.43
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.4
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.39
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.36
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.32
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.29
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.25
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.24
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.19
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.13
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.13
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.12
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.12
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.02
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.99
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.97
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.96
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.86
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.86
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.79
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.77
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.76
3ott_A	758	Two-component system sensor histidine kinase; beta	97.73
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.72
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.72
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.69
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.69
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.69
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.64
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.59
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.58
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.53
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.52
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.5
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.46
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.37
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.3
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.2
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.18
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.14
3ott_A	758	Two-component system sensor histidine kinase; beta	97.14
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.12
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.09
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.06
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.97
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.87
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.83
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.8
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.78
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.76
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.7
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.6
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.44
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.32
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.08
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.59
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	93.52
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.27
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.17
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	92.86
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.44
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	89.38
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	87.52
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	87.29
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.23
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	86.84
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	84.87
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	84.53
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	84.5
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	82.99
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	81.87
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	81.22
2zux_A	591	YESW protein; beta-propeller, lyase, rhamnose comp	80.37

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-50  Score=336.54  Aligned_cols=289  Identities=17%  Similarity=0.188  Sum_probs=253.6

Q ss_pred             CCceeEEeeeeecC-CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            3 GGGTVTCGSWIKRP-ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~-~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      +..+|++++|+|+. .+..++++|+      .|+.+++|++...      .......+.+|...|.+++|+|++.+++++
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs------~D~~v~vW~~~~~------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGS------LDDLVKVWKWRDE------RLDLQWSLEGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEE------TTSCEEEEEEETT------EEEEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEc------CCCCEEEEECCCC------CeeeeeeeccCCCCEEEEEECCCCCEEEEE
Confidence            56899999999853 2346777766      5666999998632      123445689999999999999999999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +.|+.|++||+.+++....+..       +...+.+++|+|++++|++++.||.|++|++++++....+..+...+.+++
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSIDA-------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEC-------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred             eCCCcEEEEECCCCCEEEEEeC-------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence            9999999999998887665543       556788999999999999999999999999999998888878888999999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      |+|++++|++++.|+.|++||+++++.+..+.. +...|.+++|+|+++.     +++++.|+.|++||+++++.+..+.
T Consensus       172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~-----l~s~s~dg~i~iwd~~~~~~~~~~~  245 (321)
T 3ow8_A          172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQL-----LVTASDDGYIKIYDVQHANLAGTLS  245 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCE-----EEEECTTSCEEEEETTTCCEEEEEC
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCE-----EEEEcCCCeEEEEECCCcceeEEEc
Confidence            999999999999999999999999999888874 4568999999999997     7899999999999999999999999


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .|...|.+++|+|++++|++++.|+.|++||+.+++++..+. .| ...|.+++|+|++++|++++.||.|++|+++
T Consensus       246 ~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          246 GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-DH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-CC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999999888764 56 5799999999999999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.5e-50  Score=345.17  Aligned_cols=288  Identities=13%  Similarity=0.111  Sum_probs=252.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|+|++|+|   +..++++|+      .|+.|++|++.        +......+.+|.+.|.+++|+|++++|++|+
T Consensus       107 h~~~V~~~~~~p---~~~~l~s~s------~Dg~i~vwd~~--------~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs  169 (410)
T 1vyh_C          107 HRSPVTRVIFHP---VFSVMVSAS------EDATIKVWDYE--------TGDFERTLKGHTDSVQDISFDHSGKLLASCS  169 (410)
T ss_dssp             CSSCEEEEEECS---SSSEEEEEE------SSSCEEEEETT--------TCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCcEEEEEEcC---CCCEEEEEe------CCCeEEEEECC--------CCcEEEEEeccCCcEEEEEEcCCCCEEEEEe
Confidence            457899999999   445677666      56679999987        3344567889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|++|++||+.+.+....+.       .|...|.+++|+|++++|++|+.|++|++||++++..+..+.+|...|.++.|
T Consensus       170 ~D~~i~iwd~~~~~~~~~~~-------~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  242 (410)
T 1vyh_C          170 ADMTIKLWDFQGFECIRTMH-------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  242 (410)
T ss_dssp             TTSCCCEEETTSSCEEECCC-------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCeEEEEeCCCCceeEEEc-------CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence            99999999998877655443       37789999999999999999999999999999999998888889889999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce---------------EEEEEecCCcceEE
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF---------------LFCTVQRGDKALLA  227 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~~~~~~~~~d~~i~  227 (340)
                      +|++++|++|+.|++|++||++++++...+.. +...|.+++|+|++.+..               -..+++++.|+.|+
T Consensus       243 ~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~  321 (410)
T 1vyh_C          243 NQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  321 (410)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEE
Confidence            99999999999999999999999998888864 456899999999732100               00178899999999


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      +||+++++++..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+ ..| ...|++++|+|++++|++|+
T Consensus       322 iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~-~~h-~~~v~~l~~~~~~~~l~sgs  399 (410)
T 1vyh_C          322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAH-EHFVTSLDFHKTAPYVVTGS  399 (410)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECC-SSCEEEEEECSSSSCEEEEE
T ss_pred             EEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE-cCC-CCcEEEEEEcCCCCEEEEEe
Confidence            9999999999999999999999999999999999999999999999998887766 456 57899999999999999999


Q ss_pred             cCCcEEEEEe
Q 019482          308 KEWGAMITKL  317 (340)
Q Consensus       308 ~dg~i~iw~~  317 (340)
                      .||.|++|++
T Consensus       400 ~D~~i~vW~~  409 (410)
T 1vyh_C          400 VDQTVKVWEC  409 (410)
T ss_dssp             TTSEEEEEC-
T ss_pred             CCCcEEEEeC
Confidence            9999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-48  Score=329.43  Aligned_cols=302  Identities=13%  Similarity=0.122  Sum_probs=239.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +...|.|++|+|   ++.+|++|+.....--++.+++|+......    .........+|...|.+++|+|++. +++++
T Consensus        41 H~~~V~~v~fSp---DG~~las~s~d~~~~wd~~v~~~~~~~~~~----~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s  112 (357)
T 4g56_B           41 MEVQIGAVRYRR---DGALLLAASSLSSRTWGGSIWVFKDPEGAP----NESLCTAGVQTEAGVTDVAWVSEKG-ILVAS  112 (357)
T ss_dssp             CCSEEEEEEECS---SSCEEEEEECSSSSSCCEEEEEESSCC-------CGGGCSEEEECSSCEEEEEEETTTE-EEEEE
T ss_pred             ccCCEEEEEECC---CCCEEEEEcCCCCccccCeEEEEECCCCCc----ceeEecccCCCCCCEEEEEEcCCCC-EEEEE
Confidence            356799999999   567888877544322366777776542221    1122234557899999999999985 55678


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .||.|+|||+.+++.......   ....|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|
T Consensus       113 ~dg~v~lWd~~~~~~~~~~~~---~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~  189 (357)
T 4g56_B          113 DSGAVELWEILEKESLLVNKF---AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAA  189 (357)
T ss_dssp             TTSCEEEC--------CCCCE---EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEeeccccceeEEEee---ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence            899999999987764332211   11247899999999999999999999999999999999999888889899999999


Q ss_pred             cCCCC-eEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          163 SLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       163 ~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      +|++. ++++++.|++|++||++++++...+.. .+...+.+++|+|++..+    +++++.|+.|++||+++++.+..+
T Consensus       190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~----la~g~~d~~i~~wd~~~~~~~~~~  265 (357)
T 4g56_B          190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVSLVNIKNPDSAQTS  265 (357)
T ss_dssp             CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTE----EEEEESSSCEEEEESSCGGGCEEE
T ss_pred             ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccce----EEEeecccceeEEECCCCcEeEEE
Confidence            99875 789999999999999999887766542 345679999999987652    677889999999999999999999


Q ss_pred             eccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEecCCcEEEEEec
Q 019482          241 RLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ..+...|++++|+|++ ++|++|+.|+.|+|||+++++.+..+  .| ...|++++|+| |+++|++++.||.|++|+++
T Consensus       266 ~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          266 AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            9999999999999987 68999999999999999999887754  56 67999999998 78999999999999999997


Q ss_pred             CCCC
Q 019482          319 VPAD  322 (340)
Q Consensus       319 ~~~~  322 (340)
                      .+..
T Consensus       343 ~~~~  346 (357)
T 4g56_B          343 SEGR  346 (357)
T ss_dssp             ----
T ss_pred             CCCc
Confidence            6553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.4e-47  Score=321.21  Aligned_cols=285  Identities=16%  Similarity=0.179  Sum_probs=244.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|++++|+|   +..++++|+      .|+.|++|+..        .......+..|...|.+++|+|++++|++++
T Consensus        54 H~~~v~~~~~s~---d~~~l~s~s------~Dg~v~iWd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  116 (340)
T 1got_B           54 HLAKIYAMHWGT---DSRLLLSAS------QDGKLIIWDSY--------TTNKVHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CSSCEEEEEECT---TSSEEEEEE------TTTEEEEEETT--------TCCEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEECC---CCCEEEEEe------CCCcEEEEECC--------CCCcceEeecCCccEEEEEECCCCCEEEEEe
Confidence            467899999999   445677666      56679999976        3444567788999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+.+++|++.+..........   ...|.+.|.++.|++++. +++++.|+.|++||+++++....+.+|...|.+++|
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  192 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRE---LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEE---EECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             CCCeEEEEECccCCCcceeEEE---ecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence            9999999999765421111110   113778999999998874 889999999999999999998888889899999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      +|+++++++|+.|++|++||+++++++..+.. +...|.+++|+|++..     +++++.|+.|++||+++++.+..+..
T Consensus       193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~-----l~s~s~d~~v~iwd~~~~~~~~~~~~  266 (340)
T 1got_B          193 APDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCE-----EEEEcCCCcEEEEECCCCcEEEEEcc
Confidence            99999999999999999999999998888875 4568999999999987     78999999999999999887665543


Q ss_pred             c--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          243 L--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       243 ~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      .  ...+.+++|+|+|++|++|+.|+.|++||+.+++....+ .+| ..+|.+++|+|++++|++|+.|+.|+||+
T Consensus       267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~-~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe-ecC-CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            2  247999999999999999999999999999998887765 466 57999999999999999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-47  Score=321.11  Aligned_cols=295  Identities=11%  Similarity=0.082  Sum_probs=234.1

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEE-----eCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFS-----FDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF   78 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~-----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l   78 (340)
                      ...|.+++|+|   ++.+++.++       +.++++|+     ++......  ..........|...|.+++|+|++ .|
T Consensus        30 ~~~v~~~~fs~---dG~~l~~~s-------d~~~r~Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~d~-~l   96 (344)
T 4gqb_B           30 ERQLEAARYRS---DGALLLGAS-------SLSGRCWAGSLWLFKDPCAAP--NEGFCSAGVQTEAGVADLTWVGER-GI   96 (344)
T ss_dssp             CSEEEEEEECT---TSCEEEEEE-------CCSSSCCCEEEEEESSGGGTT--CGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred             cCCEEEEEECC---CCCEEEEEe-------CCceEEeeceeeeeccccccC--CcceeeeeeccCCCEEEEEEeCCC-eE
Confidence            35699999999   556777443       33344443     22111100  111112233467889999999985 68


Q ss_pred             EEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcccee
Q 019482           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVL  158 (340)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~  158 (340)
                      ++++.||.|+|||+.+++........   ...|.+.|.+++|+|++++|++|+.|++|++||+++++.+..+.+|...|.
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~---~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFC---KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEE---EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEECCCEEEEEeccCCCceeEeecc---ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            89999999999999987654333211   114889999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          159 DMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       159 ~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      +++|+|++. +|++++.|++|++||++++++...+.. .+...+.+++|+|++..+    +++++.|+.|++||++++++
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----l~sg~~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSLVDTKSTSC  249 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE----EEEEETTSEEEEEESCC--C
T ss_pred             EEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc----eEEeccCCcEEEEECCCCcE
Confidence            999999875 689999999999999999998887753 334568999999976652    57788999999999999999


Q ss_pred             EeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEecCCcEEE
Q 019482          237 IGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMI  314 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i  314 (340)
                      +..+..|...|++++|+|++ ++|++|+.|+.|+|||+++++....  .+| ...|++++|+|+++ +|+++|.|+.|++
T Consensus       250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--~~H-~~~V~~v~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          250 VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--QAH-RDFVRDATWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--CCC-SSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--cCC-CCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence            99999999999999999998 6899999999999999999987653  467 67999999999985 6779999999999


Q ss_pred             EEecCCC
Q 019482          315 TKLTVPA  321 (340)
Q Consensus       315 w~~~~~~  321 (340)
                      |+++...
T Consensus       327 w~v~~~~  333 (344)
T 4gqb_B          327 HVVPTEP  333 (344)
T ss_dssp             EECCC--
T ss_pred             EECCCCC
Confidence            9997543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.7e-47  Score=314.46  Aligned_cols=283  Identities=11%  Similarity=0.143  Sum_probs=244.1

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..+|++++|+|+   ..++++|+      .++.+++|++.        +......+.+|...|.+++|+|++++|++|+.
T Consensus        13 ~~~V~~~~fsp~---~~~l~s~~------~dg~v~lWd~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~   75 (304)
T 2ynn_A           13 SDRVKGIDFHPT---EPWVLTTL------YSGRVELWNYE--------TQVEVRSIQVTETPVRAGKFIARKNWIIVGSD   75 (304)
T ss_dssp             CSCEEEEEECSS---SSEEEEEE------TTSEEEEEETT--------TTEEEEEEECCSSCEEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEECCC---CCEEEEEc------CCCcEEEEECC--------CCceeEEeeccCCcEEEEEEeCCCCEEEEECC
Confidence            578999999994   45677665      56679999987        45556778899999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~  162 (340)
                      |+.|++||+.+++....+..       |...|.+++|+|++++|++|+.|++|++||++++. ....+.+|...|.+++|
T Consensus        76 d~~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~  148 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDFEA-------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF  148 (304)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeC-------CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence            99999999998887665543       78899999999999999999999999999998774 44556678889999999


Q ss_pred             cC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc--CCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       163 ~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      +| ++.+|++|+.|++|++||++++.....+..++...+..+.|+|  ++.+     +++++.|+.|++||+++++++..
T Consensus       149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~s~s~D~~i~iWd~~~~~~~~~  223 (304)
T 2ynn_A          149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVAT  223 (304)
T ss_dssp             CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCE-----EEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCE-----EEEEcCCCeEEEEeCCCCcccee
Confidence            99 6789999999999999999988877777766667799999987  4554     78999999999999999999999


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe--EEEEEecCCcEEEEEe
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKL  317 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iw~~  317 (340)
                      +..|...|.+++|+|++++|++|+.||.|++||+++++.+..+. .| ...+.+++|+|++.  ++++|+.| .+.+|++
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~  300 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VG-LERSWCIATHPTGRKNYIASGFDN-GFTVLSL  300 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CS-SSSEEEEEECTTCGGGCEEEEETT-EEEEEEC
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-CC-CccEEEEEECCCCCceEEEEecCC-ceEEEEe
Confidence            99999999999999999999999999999999999999887764 44 46899999999875  57777655 5677776


Q ss_pred             c
Q 019482          318 T  318 (340)
Q Consensus       318 ~  318 (340)
                      .
T Consensus       301 ~  301 (304)
T 2ynn_A          301 G  301 (304)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-47  Score=342.82  Aligned_cols=313  Identities=17%  Similarity=0.250  Sum_probs=248.7

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|.+++|+|+..  ..+++|+      .|+.+++|+..        .......+.+|.+.|++++|+|+|++|++++
T Consensus       146 h~~~v~~v~f~p~~~--~~l~s~s------~D~~v~lwd~~--------~~~~~~~l~~H~~~V~~v~fspdg~~las~s  209 (611)
T 1nr0_A          146 QARAMNSVDFKPSRP--FRIISGS------DDNTVAIFEGP--------PFKFKSTFGEHTKFVHSVRYNPDGSLFASTG  209 (611)
T ss_dssp             CSSCEEEEEECSSSS--CEEEEEE------TTSCEEEEETT--------TBEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEEEECCCCC--eEEEEEe------CCCeEEEEECC--------CCeEeeeeccccCceEEEEECCCCCEEEEEE
Confidence            356899999999543  3466555      56779999865        3455667899999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec-------------
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-------------  149 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-------------  149 (340)
                      .|+.|++||+.+++....+.........|.+.|.+++|+|++++|++++.|++|++||+++++....             
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            9999999999887765544322222235889999999999999999999999999999987654322             


Q ss_pred             ------------------------------cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC----
Q 019482          150 ------------------------------EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN----  195 (340)
Q Consensus       150 ------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~----  195 (340)
                                                    +.+|...|.+++|+|++++|++++.|++|++||+++++....+...    
T Consensus       290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~  369 (611)
T 1nr0_A          290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM  369 (611)
T ss_dssp             EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred             EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence                                          2356678999999999999999999999999999876543321000    


Q ss_pred             -----------------------------------------------------------------------------CCC
Q 019482          196 -----------------------------------------------------------------------------SDE  198 (340)
Q Consensus       196 -----------------------------------------------------------------------------~~~  198 (340)
                                                                                                   +..
T Consensus       370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~  449 (611)
T 1nr0_A          370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY  449 (611)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred             EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence                                                                                         112


Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC-
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK-  275 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-  275 (340)
                      .+.+++|+|+++.     +++++.|+.|++||+.++..  +.. ..|...|++++|+|+|++|++++.|+.|++||+.+ 
T Consensus       450 ~v~~va~spdg~~-----lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~  523 (611)
T 1nr0_A          450 NSSCVALSNDKQF-----VAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN  523 (611)
T ss_dssp             CEEEEEECTTSCE-----EEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             CceEEEEeCCCCE-----EEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC
Confidence            3567889999987     78999999999999987653  233 67888999999999999999999999999999988 


Q ss_pred             ceEeec-ccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccc-ccccccC
Q 019482          276 MEINHW-SKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLH-SHSQNSV  339 (340)
Q Consensus       276 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~v  339 (340)
                      ++.... ....| ...|.+++|+|||++|++++.|+.|++|+++.+... .......| ...|.+|
T Consensus       524 ~~~~~~~~~~~H-~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~-~~~~~~~h~~~~v~~v  587 (611)
T 1nr0_A          524 FELAHTNSWTFH-TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH-PIIIKGAHAMSSVNSV  587 (611)
T ss_dssp             TEESCCCCCCCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC-CEEETTSSTTSCEEEE
T ss_pred             Cceeeeeeeeec-ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc-cchhhccCcccCeeEE
Confidence            666544 22336 679999999999999999999999999999765531 11445677 6777665

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.4e-46  Score=316.53  Aligned_cols=288  Identities=17%  Similarity=0.186  Sum_probs=243.3

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|+|++|+|+   ..++++|+      .|+.+++|+..        +......+..|...|.+++|+|+|.+|++++
T Consensus        63 H~~~V~~~~~s~d---~~~l~s~s------~Dg~v~vWd~~--------~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~  125 (354)
T 2pbi_B           63 HGNKVLCMDWCKD---KRRIVSSS------QDGKVIVWDSF--------TTNKEHAVTMPCTWVMACAYAPSGCAIACGG  125 (354)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSEEEEEETT--------TCCEEEEEECSSSCCCEEEECTTSSEEEEES
T ss_pred             CCCeEEEEEECCC---CCEEEEEe------CCCeEEEEECC--------CCCcceEEecCCCCEEEEEECCCCCEEEEee
Confidence            4678999999994   45677666      56779999876        3344566778999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+.+++|++......... ........|...|.+++|+|++..|++++.|++|++||+++++.+..+.+|...|.+++|
T Consensus       126 ~d~~i~v~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~  204 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMA-AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL  204 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSG-GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             CCCCEEEEEEecccccccc-ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence            9999999998653211100 000001137889999999999999999999999999999999999888889889999999


Q ss_pred             cC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          163 SL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       163 ~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      +|  ++++|++|+.|++|++||+++++++..+.. +...|.+++|+|++..     +++++.|+.|++||++..+.+..+
T Consensus       205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~-----l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDA-----FASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCcEEEEE
Confidence            87  568999999999999999999999888864 4568999999999987     789999999999999998776555


Q ss_pred             ecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          241 RLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       241 ~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ..+  ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+ .+| ...|++++|+|||++|++|+.||.|+||+
T Consensus       279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l-~~h-~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL-FGH-ENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE-ECC-CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            433  346889999999999999999999999999998877665 466 67999999999999999999999999995

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3e-47  Score=323.89  Aligned_cols=294  Identities=17%  Similarity=0.191  Sum_probs=242.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +.++|+|++|+|+   ..++++|+      .|+.|++|+..        +......+..|...|.+++|+|+|++|++++
T Consensus        65 H~~~V~~~~~sp~---~~~l~s~s------~D~~v~iWd~~--------~~~~~~~~~~h~~~v~~~~~s~~g~~las~~  127 (380)
T 3iz6_a           65 HSGKVYSLDWTPE---KNWIVSAS------QDGRLIVWNAL--------TSQKTHAIKLHCPWVMECAFAPNGQSVACGG  127 (380)
T ss_dssp             CSSCEEEEEECTT---SSCEEEEE------TTSEEEEEETT--------TTEEEEEEECCCTTCCCCEECTTSSEEEECC
T ss_pred             cccEEEEEEEcCC---CCEEEEEe------CCCeEEEEECC--------CCccceEEecCCCCEEEEEECCCCCEEEEee
Confidence            4689999999994   45677665      56779999986        4556677899999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeecc-----ccCccc
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-----PKAHKS  156 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~-----~~~~~~  156 (340)
                      .|+.+++|++.+................|.+.|.++.|+|+ +..|++|+.|++|++||+++++.+..+     .+|...
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence            99999999997543211111111112347889999999996 457999999999999999998877654     456678


Q ss_pred             eeEEEecC-CCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482          157 VLDMDFSL-DSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (340)
Q Consensus       157 i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  234 (340)
                      |.++.|+| ++++|++|+.|++|++||++. ++.+..+. .|...|.+++|+|++..     +++++.|+.|++||++++
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~-----l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQR-----FGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSE-----EEEECSSSCEEEEETTTT
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCe-----EEEEcCCCeEEEEECCCC
Confidence            99999987 889999999999999999984 45666665 45678999999999997     899999999999999999


Q ss_pred             cEEeeeeccC-------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc---ccccccceeeEEEecCCeEEE
Q 019482          235 NKIGHKRLLR-------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK---RLHLGTSIALVEFCPTQRVVL  304 (340)
Q Consensus       235 ~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~  304 (340)
                      +.+..+..+.       ..+++++|+|+|++|++|+.||.|++||+.+++....+.   ..| ...|++++|+|||++|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~  360 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSALC  360 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEEE
T ss_pred             cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEEE
Confidence            8877665432       248999999999999999999999999998887665442   356 67999999999999999


Q ss_pred             EEecCCcEEEEEecCC
Q 019482          305 TASKEWGAMITKLTVP  320 (340)
Q Consensus       305 ~~~~dg~i~iw~~~~~  320 (340)
                      +|+.||.|+||++...
T Consensus       361 sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          361 TGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EECTTSCEEEEECCSS
T ss_pred             EeeCCCCEEEEecCCC
Confidence            9999999999998643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.4e-47  Score=312.21  Aligned_cols=253  Identities=12%  Similarity=0.130  Sum_probs=222.2

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      ...++.+|.+.|.+++|+|++++|++++.||.|++||+.++.....+..       |..+|.+++|+|++++|++|+.|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~s~d~   77 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV-------TETPVRAGKFIARKNWIIVGSDDF   77 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec-------cCCcEEEEEEeCCCCEEEEECCCC
Confidence            3467899999999999999999999999999999999998876655543       668999999999999999999999


Q ss_pred             cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC-CCcce
Q 019482          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD-GTKPF  213 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~  213 (340)
                      .|++||+.+++.+..+..|...|.+++|+|++++|++|+.|++|++||++++.........|...|.+++|+|+ +..  
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~--  155 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST--  155 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE--
T ss_pred             EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE--
Confidence            99999999999998898999999999999999999999999999999999875554444456678999999995 554  


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECC--CCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  290 (340)
                         +++++.|+.|++||+++......+. .+...+..+.|+|  ++.+|++++.|+.|++||+++++++..+ .+| ...
T Consensus       156 ---l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~-~~h-~~~  230 (304)
T 2ynn_A          156 ---FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGH-MSN  230 (304)
T ss_dssp             ---EEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE-ECC-SSC
T ss_pred             ---EEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee-CCC-CCC
Confidence               7899999999999998877655544 4557889999987  7789999999999999999999988776 456 579


Q ss_pred             eeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          291 IALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      |..++|+|++++|++++.||.|++|++....
T Consensus       231 v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~  261 (304)
T 2ynn_A          231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYK  261 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999999999999999999999999986543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2e-47  Score=322.82  Aligned_cols=303  Identities=18%  Similarity=0.240  Sum_probs=235.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCC-cccCCCceEEEEeCCCCCCccc--CCeeeEEEecCCCCeeEEEEcCCCCeEEE
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSR-ASSSPSVLEIFSFDPKTTSVYT--SPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~-~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   80 (340)
                      ++||+|++|+|   ++.+|++|++.. ..+.+|.|++|+++........  .......+.+|...|.+++++  ++.+++
T Consensus        14 g~PV~sv~fs~---dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLN---NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILV   88 (365)
T ss_dssp             SSCEEEEEEEE---TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEE
T ss_pred             CCCEEEEEEeC---CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEE
Confidence            68999999999   556788876544 3567899999999866544322  223445678899999998875  455665


Q ss_pred             E-----------ecCCCEEEEEecCceeeeeeccc--cCCCCCCCCCeEEEEEecCCCeEEE--ccCCCcEEEEeCCCCc
Q 019482           81 S-----------TTNGGCKLFEVYGGATDINLLAK--KMPPLQDAGPQKCLSFSVDGSRFAA--GGVDGHLRIMHWPSLR  145 (340)
Q Consensus        81 ~-----------~~d~~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~  145 (340)
                      +           +.|+.+++|++............  ......+...+.+++|+|||+++++  ++.|++|++||+++++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~  168 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT  168 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence            4           45778999998765432222111  1112234567899999999998764  5578999999999998


Q ss_pred             eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE-eecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      .+..+ .|+..|.+++|+|||+++++++. +.+++|+..+++.+.. ....+...+.+++|+|+++.     +++++.++
T Consensus       169 ~~~~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~-----l~~~s~d~  241 (365)
T 4h5i_A          169 EKFEI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV-----LIAASLKK  241 (365)
T ss_dssp             EEEEE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE-----EEEEEESS
T ss_pred             EEEEe-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE-----EEEEecCC
Confidence            88766 46778999999999999999985 5677777777766543 33445668999999999987     45554444


Q ss_pred             ----eEEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482          225 ----LLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       225 ----~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                          .+++||+.....    ...+..+...|++++|+|||++||+|+.|+.|+|||+++++++..+..+| ..+|++++|
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~f  320 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTI  320 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEE
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEE
Confidence                688999877653    34566788899999999999999999999999999999999988776778 689999999


Q ss_pred             ecCCeEEEEEecCCcEEEEEecC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +|||++||+||.|++|+||+++.
T Consensus       321 Spdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          321 SPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999999963

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.3e-46  Score=307.89  Aligned_cols=289  Identities=11%  Similarity=0.092  Sum_probs=243.9

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +.++|++++|+|...  .++++|+      .|+.+++|++......   .......+.+|...|.+++|+|++++|++++
T Consensus        16 H~~~V~~l~~~~~~~--~~l~s~s------~D~~v~~W~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A           16 HNGWVTSLATSAGQP--NLLLSAS------RDKTLISWKLTGDDQK---FGVPVRSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             CSSCEEEEEECSSCT--TEEEEEE------TTSEEEEEEEEEETTE---EEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccceEEEEEccCCCc--cEEEEec------CCccEEEecCCCCCcc---ccccceEEeCCcccEEEEEECCCCCEEEEEe
Confidence            468899999998543  5677666      5667999998633221   1234567899999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|++|++||+.+++....+..       |...|.+++|+|++++|++++.|++|++||++ ++.+..+.+|...|.++.|
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~  156 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVG-------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRV  156 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECCCCCeeEEEcc-------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEE
Confidence            999999999999887665543       78899999999999999999999999999986 4566677788889999999


Q ss_pred             cCC------CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          163 SLD------SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       163 ~~~------~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      +|.      +..+++++.|+.|++||+++.+....+.. |...|.+++|+|+++.     +++++.|+.|++||+++++.
T Consensus       157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~-----l~s~~~dg~i~iwd~~~~~~  230 (319)
T 3frx_A          157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTL-----IASAGKDGEIMLWNLAAKKA  230 (319)
T ss_dssp             CCC------CCEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEE
T ss_pred             ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCE-----EEEEeCCCeEEEEECCCCcE
Confidence            985      44899999999999999999988887765 4568999999999997     78999999999999999998


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc-------cccccceeeEEEecCCeEEEEEecC
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR-------LHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      +..+..+ ..+.+++|+|++.++++++.+ .+++|++........+..       .+ ...+.+++|+|||++|++|+.|
T Consensus       231 ~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~sg~~D  307 (319)
T 3frx_A          231 MYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAA-EPHAVSLAWSADGQTLFAGYTD  307 (319)
T ss_dssp             EEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGG-CCCEEEEEECTTSSEEEEEETT
T ss_pred             EEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCc-CcceeEEEECCCCCEEEEeecC
Confidence            8777654 589999999999999988765 599999988766544321       22 4578999999999999999999


Q ss_pred             CcEEEEEecC
Q 019482          310 WGAMITKLTV  319 (340)
Q Consensus       310 g~i~iw~~~~  319 (340)
                      |.|+||++..
T Consensus       308 g~i~vWd~~t  317 (319)
T 3frx_A          308 NVIRVWQVMT  317 (319)
T ss_dssp             SCEEEEEEEE
T ss_pred             ceEEEEEEee
Confidence            9999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=8.2e-46  Score=306.97  Aligned_cols=285  Identities=16%  Similarity=0.221  Sum_probs=247.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|++++|+|+   ..++++|+      .++.+++|+..        .......+.+|...|.+++|+|++++|++++
T Consensus        22 h~~~v~~~~~s~~---~~~l~s~~------~dg~i~iw~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   84 (312)
T 4ery_A           22 HTKAVSSVKFSPN---GEWLASSS------ADKLIKIWGAY--------DGKFEKTISGHKLGISDVAWSSDSNLLVSAS   84 (312)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCcEEEEEECCC---CCEEEEee------CCCeEEEEeCC--------CcccchhhccCCCceEEEEEcCCCCEEEEEC
Confidence            4578999999994   45677665      56669999876        3445567889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+.|++||+.+++....+..       |...|.+++|+|++++|++++.|+.|++||+++++....+..|...|.+++|
T Consensus        85 ~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A           85 DDKTLKIWDVSSGKCLKTLKG-------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEcC-------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence            999999999998876655532       7789999999999999999999999999999999988888888889999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      +|++++|++++.|+.|++||+++++.+..+...+...+..++|+|++++     +++++.|+.|++||+++++.+..+..
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~d~~i~iwd~~~~~~~~~~~~  232 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-----ILAATLDNTLKLWDYSKGKCLKTYTG  232 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-----EEEEETTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-----EEEEcCCCeEEEEECCCCcEEEEEEe
Confidence            9999999999999999999999999888877666678999999999997     78889999999999999998888877


Q ss_pred             cCCCe---eEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe--cCCcEEEEEe
Q 019482          243 LRKPA---SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS--KEWGAMITKL  317 (340)
Q Consensus       243 ~~~~i---~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iw~~  317 (340)
                      +....   ......+++.+|++|+.||.|++||+.+++.+..+ ..| ...|.+++|+|++++|++++  .|+.|++|+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL-QGH-TDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE-CCC-SSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh-hcc-CCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            76543   23333468899999999999999999999888766 356 57999999999999999987  6999999986


Q ss_pred             c
Q 019482          318 T  318 (340)
Q Consensus       318 ~  318 (340)
                      +
T Consensus       311 d  311 (312)
T 4ery_A          311 D  311 (312)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.5e-46  Score=311.58  Aligned_cols=289  Identities=12%  Similarity=0.119  Sum_probs=230.5

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCee-eEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLV-TYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ++|++++|+|   ++.++|+|+      .|+.|++|+++...      ... .....+|...|.+++|+|+|++|++++.
T Consensus        17 ~~v~~l~~sp---~g~~las~~------~D~~i~iw~~~~~~------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A           17 SRCWFLAWNP---AGTLLASCG------GDRRIRIWGTEGDS------WICKSVLSEGHQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             SCEEEEEECT---TSSCEEEEE------TTSCEEEEEEETTE------EEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred             CcEEEEEECC---CCCEEEEEc------CCCeEEEEEcCCCc------ceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence            3899999999   445677666      56669999986321      111 2234689999999999999999999999


Q ss_pred             CCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc---eeeccccCcccee
Q 019482           84 NGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR---IILDEPKAHKSVL  158 (340)
Q Consensus        84 d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---~~~~~~~~~~~i~  158 (340)
                      |+.+++|++.....  ...+.       .|...|.+++|+|++++|++++.|+.|++||+.++.   .+..+..|...|.
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~-------~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~  154 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLE-------GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK  154 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred             CCcEEEEEccCCCeEEEEEcc-------CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence            99999999987643  22222       378899999999999999999999999999998764   3445667778999


Q ss_pred             EEEecCCCCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC--
Q 019482          159 DMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--  234 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--  234 (340)
                      +++|+|++++|++++.|++|++||.++++.  ...+. .|...|.+++|+|++++     +++++.|+.|++||....  
T Consensus       155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~-----l~s~s~D~~v~iW~~~~~~~  228 (345)
T 3fm0_A          155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQR-----LASCSDDRTVRIWRQYLPGN  228 (345)
T ss_dssp             EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECTTSSE-----EEEEETTSCEEEEEEECTTC
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECCCCCE-----EEEEeCCCeEEEeccccCCC
Confidence            999999999999999999999999988754  34454 45678999999999997     789999999999996432  


Q ss_pred             -------------cEEeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE--------eeccccccccccee
Q 019482          235 -------------NKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--------NHWSKRLHLGTSIA  292 (340)
Q Consensus       235 -------------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~~i~  292 (340)
                                   +++..+.. |...|.+++|+|++..|++++.|+.|++|+......        ......+| ...|+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~  307 (345)
T 3fm0_A          229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVN  307 (345)
T ss_dssp             TTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEE
T ss_pred             CccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEe
Confidence                         12223333 677899999999999999999999999999876431        11122356 57999


Q ss_pred             eEEEecCC-eEEEEEecCCcEEEEEecCCCC
Q 019482          293 LVEFCPTQ-RVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       293 ~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      +++|+|++ .+|++|+.||.|++|++..+..
T Consensus       308 ~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          308 CVAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             EEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             EeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            99999998 5999999999999999987664

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-46  Score=322.11  Aligned_cols=267  Identities=16%  Similarity=0.209  Sum_probs=240.5

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      ....+.+|.++|++++|+|++.+|++|+.|+.|++||+.+++....+.       .|...|.+++|+|++++|++|+.|+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-------~h~~~V~~v~~~~~~~~l~sgs~D~  172 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-------GHTDSVQDISFDHSGKLLASCSADM  172 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-------ccCCcEEEEEEcCCCCEEEEEeCCC
Confidence            346788999999999999999999999999999999999887665553       2778999999999999999999999


Q ss_pred             cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      +|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++++..+.. +...+.++.|+|++..   
T Consensus       173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~g~~---  248 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTL---  248 (410)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTSSE---
T ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-CCccEEEEEECCCCCE---
Confidence            999999999999888888989999999999999999999999999999999999988875 4567999999999997   


Q ss_pred             EEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC--------------------CCEEEEeeCCCcEEEEecc
Q 019482          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD--------------------GKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg~i~i~d~~  274 (340)
                        +++++.|+.|++||+++++....+..|...|.+++|+|+                    +.+|++|+.|+.|++||++
T Consensus       249 --l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          249 --IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             --EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             --EEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence              789999999999999999999899999999999999996                    6789999999999999999


Q ss_pred             CceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       275 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      +++++..+ .+| ...|++++|+|++++|++++.||.|++|++....   .......|...|.++
T Consensus       327 ~~~~~~~~-~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~---~~~~~~~h~~~v~~l  386 (410)
T 1vyh_C          327 TGMCLMTL-VGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMKTLNAHEHFVTSL  386 (410)
T ss_dssp             TTEEEEEE-ECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---CCEEEECCSSCEEEE
T ss_pred             CCceEEEE-ECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---eEEEEcCCCCcEEEE
Confidence            99988766 356 5789999999999999999999999999996543   455566788777665

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-45  Score=314.72  Aligned_cols=284  Identities=16%  Similarity=0.197  Sum_probs=236.6

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec------------------CCC
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------------------SEG   64 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------------------h~~   64 (340)
                      +..+|+|++|+|   ++.++|+|+       ++.+++|++...        .....+.+                  +..
T Consensus        63 h~~~V~~v~fsp---dg~~la~g~-------~~~v~i~~~~~g--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  124 (393)
T 1erj_A           63 HTSVVCCVKFSN---DGEYLATGC-------NKTTQVYRVSDG--------SLVARLSDDSAANKDPENLNTSSSPSSDL  124 (393)
T ss_dssp             CSSCCCEEEECT---TSSEEEEEC-------BSCEEEEETTTC--------CEEEEECC-----------------CCCC
T ss_pred             CCCEEEEEEECC---CCCEEEEEc-------CCcEEEEEecCC--------CEEEEecCccccccccccccccccCCCce
Confidence            567899999999   456777543       456999987622        11222222                  233


Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      .|.+++|+|+|++|++++.|+.|++||+.+++....+.       .|...|.+++|+|++++|++++.|++|++||++++
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-------cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence            49999999999999999999999999999887655543       37789999999999999999999999999999998


Q ss_pred             ceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEee------cCCCCceeeEEEccCCCcceEEEE
Q 019482          145 RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT------RNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      +....+ .+...+.+++|+| ++++|++++.|+.|++||+++++.+..+.      ..+...|.+++|+|+++.     +
T Consensus       198 ~~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-----l  271 (393)
T 1erj_A          198 QCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-----V  271 (393)
T ss_dssp             EEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-----E
T ss_pred             eeEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-----E
Confidence            876655 3566899999999 89999999999999999999988877663      245678999999999987     7


Q ss_pred             EecCCcceEEEEECCCC------------cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          218 VQRGDKALLAVYDISTW------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                      ++++.|+.|++||+++.            .....+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+ .+
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-~~  350 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QG  350 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-EC
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE-CC
Confidence            89999999999999763            334567788889999999999999999999999999999999887766 46


Q ss_pred             ccccceeeEEEec------CCeEEEEEecCCcEEEEEecC
Q 019482          286 HLGTSIALVEFCP------TQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       286 ~~~~~i~~~~~~~------~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      | ...|.+++|++      ++++|++|+.||.|+||++..
T Consensus       351 h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          351 H-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             C-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             C-CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            6 57899999986      689999999999999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-45  Score=305.82  Aligned_cols=286  Identities=14%  Similarity=0.109  Sum_probs=219.9

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE-ec-CCCCeeEEEEcCCCCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DE-SEGDPMTIAVNPSGDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~l~~   80 (340)
                      +..+|++++|+|   +  ++++|+      .|+.|++|++....      ......+ .+ |...|.+++|+|++++|++
T Consensus        13 h~~~v~~~~~s~---~--~las~~------~D~~i~lw~~~~~~------~~~~~~~~~~~h~~~v~~v~~sp~~~~las   75 (330)
T 2hes_X           13 YKEKIWSFDFSQ---G--ILATGS------TDRKIKLVSVKYDD------FTLIDVLDETAHKKAIRSVAWRPHTSLLAA   75 (330)
T ss_dssp             CSSCEEEEEEET---T--EEEEEE------SSSCEEEEECSSSC------CEEEEEECTTCCCSCEEEEEECTTSSEEEE
T ss_pred             CCCceeeeccCC---C--EEEEEc------CCCEEEEEEecCCC------eEEEEEEecCCccCCEEEEEECCCCCEEEE
Confidence            467899999998   3  677665      56679999986321      1222334 34 9999999999999999999


Q ss_pred             EecCCCEEEEEecCce-------eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC----ceeec
Q 019482           81 STTNGGCKLFEVYGGA-------TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL----RIILD  149 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~----~~~~~  149 (340)
                      ++.|+.|++||+....       ....+       ..|...|.+++|+|++++|++|+.|++|++||++..    +.+..
T Consensus        76 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~-------~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~  148 (330)
T 2hes_X           76 GSFDSTVSIWAKEESADRTFEMDLLAII-------EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV  148 (330)
T ss_dssp             EETTSCEEEEEC-------CCCEEEEEE-------C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred             EeCCCcEEEEEcccCcCccccceeEEEE-------cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence            9999999999986422       11111       137889999999999999999999999999999532    34556


Q ss_pred             cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC--eeEEEeecCCCCceeeEEEccC--CCcceEEEEEecCCcce
Q 019482          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG--VAWTFLTRNSDEKIELCRFSKD--GTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~d~~  225 (340)
                      +..|...|.+++|+|++++|++++.|++|++||.+++  +++..+.. |...|.+++|+|+  +..     +++++.|+.
T Consensus       149 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~-----l~s~s~D~~  222 (330)
T 2hes_X          149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFR-----LCSGSDDST  222 (330)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCSSSSCE-----EEEEETTSC
T ss_pred             eccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-CCCcEEEEEecCCCCeeE-----EEEEeCCCe
Confidence            6778889999999999999999999999999999876  56666654 5578999999998  444     688999999


Q ss_pred             EEEEECCCC--------cEEeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce--EeecccccccccceeeE
Q 019482          226 LAVYDISTW--------NKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--INHWSKRLHLGTSIALV  294 (340)
Q Consensus       226 i~i~d~~~~--------~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~i~~~  294 (340)
                      |++||++.+        .....+.. |...|.+++|++++ +|++++.||.|++||..+++  ........|....|.++
T Consensus       223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v  301 (330)
T 2hes_X          223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV  301 (330)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE
T ss_pred             EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE
Confidence            999998764        23333443 78899999999765 89999999999999998874  23233345532389999


Q ss_pred             EEec--CCeEEEEEecCCcEEEEEecC
Q 019482          295 EFCP--TQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       295 ~~~~--~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +|+|  ++++|++|+.||.|+||+++.
T Consensus       302 ~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          302 KWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEecCCCceEEEEecCCCcEEEEEecc
Confidence            9999  789999999999999999853

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.1e-46  Score=335.51  Aligned_cols=286  Identities=15%  Similarity=0.156  Sum_probs=238.5

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      .+.+.+++|+|   +++.++++.       ++.+.+|++.        .+.....+.+|...|++++|+|+|++||+|+.
T Consensus        18 ~g~~~~~~~sp---dg~~l~~~~-------~~~v~l~~~~--------~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~   79 (611)
T 1nr0_A           18 RGTAVVLGNTP---AGDKIQYCN-------GTSVYTVPVG--------SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV   79 (611)
T ss_dssp             TTCCCCCEECT---TSSEEEEEE-------TTEEEEEETT--------CSSCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cCceeEEeeCC---CCCEEEeCC-------CCEEEEecCC--------CcccCeEecCCCCceEEEEECCCCcEEEEEeC
Confidence            46788999999   455777554       3469999986        33344678899999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCceeeccccCccceeE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEPKAHKSVLD  159 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~i~~  159 (340)
                      |+.|+|||+.+++.......     ..|.++|.+++|+|++++|++++.+    +.|++||  +++....+.+|...|.+
T Consensus        80 d~~v~lWd~~~~~~~~~~~~-----~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~  152 (611)
T 1nr0_A           80 HGNVRIWDTTQTTHILKTTI-----PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNS  152 (611)
T ss_dssp             TSEEEEEESSSTTCCEEEEE-----ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEE
T ss_pred             CCCEEEeECCCCcceeeEee-----cccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceE
Confidence            99999999975433211111     1277899999999999999988765    4788887  45566677888889999


Q ss_pred             EEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe
Q 019482          160 MDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (340)
Q Consensus       160 ~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  238 (340)
                      ++|+|++. .|++++.|++|++||.++++....+.. |...|.+++|+|+++.     +++++.|+.|++||+.+++.+.
T Consensus       153 v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~-----las~s~D~~i~lwd~~~g~~~~  226 (611)
T 1nr0_A          153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSL-----FASTGGDGTIVLYNGVDGTKTG  226 (611)
T ss_dssp             EEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEE
T ss_pred             EEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCE-----EEEEECCCcEEEEECCCCcEee
Confidence            99999987 599999999999999999888888764 5568999999999997     7899999999999999998877


Q ss_pred             eee-------ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc----------------------------
Q 019482          239 HKR-------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----------------------------  283 (340)
Q Consensus       239 ~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------  283 (340)
                      .+.       .|...|.+++|+|+|++|++++.|+.|++||+.+++.+..+.                            
T Consensus       227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i  306 (611)
T 1nr0_A          227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI  306 (611)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCE
T ss_pred             eeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcE
Confidence            774       688999999999999999999999999999999876543321                            


Q ss_pred             --------------ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          284 --------------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       284 --------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                                    .+| ...|++++|+|||++|++++.|+.|++|++....
T Consensus       307 ~~~~~~~~~~~~~~~gh-~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~  357 (611)
T 1nr0_A          307 NFVNPELGSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGI  357 (611)
T ss_dssp             EEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEeCCCCCcceEEcCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence                          245 5689999999999999999999999999987543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7e-46  Score=307.98  Aligned_cols=269  Identities=18%  Similarity=0.186  Sum_probs=233.3

Q ss_pred             eeEEEecCCCCeeEEEEcCC----CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482           55 VTYVFDESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (340)
                      ....+++|.+.|.+++|+|+    +.+|++|+.|++|++|++...+.......     ..|...|.+++|++++.+++++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-----~gh~~~v~~~~~~~~~~~l~s~   98 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-----EGHQLGVVSVDISHTLPIAASS   98 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECSSSSEEEEE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-----ccCCCCEEEEEECCCCCEEEEE
Confidence            34556789999999999985    56899999999999999987654332211     1378899999999999999999


Q ss_pred             cCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      +.|++|++||+++++.+..+..+...+.+++|+|++++|++++.|+.|++||+++++....+.. +...+.+++|+|+++
T Consensus        99 s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-~~~~v~~~~~spdg~  177 (321)
T 3ow8_A           99 SLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-RGKFILSIAYSPDGK  177 (321)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-SSSCEEEEEECTTSS
T ss_pred             eCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-CCceEEEEEECCCCC
Confidence            9999999999999998888888888899999999999999999999999999999988887764 445799999999999


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  290 (340)
                      .     +++++.|+.|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++||+++++....+ ..| ...
T Consensus       178 ~-----lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h-~~~  250 (321)
T 3ow8_A          178 Y-----LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL-SGH-ASW  250 (321)
T ss_dssp             E-----EEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE-CCC-SSC
T ss_pred             E-----EEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE-cCC-CCc
Confidence            7     788999999999999999999999999999999999999999999999999999999998887665 456 578


Q ss_pred             eeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          291 IALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      |.+++|+|++++|++++.|+.|++|++....   .......|...|.+|
T Consensus       251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~h~~~v~~v  296 (321)
T 3ow8_A          251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVHTFFDHQDQVWGV  296 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE---EEEEECCCSSCEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCE---EEEEEcCCCCcEEEE
Confidence            9999999999999999999999999996543   345556677777655

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.3e-45  Score=306.72  Aligned_cols=270  Identities=13%  Similarity=0.120  Sum_probs=233.5

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  132 (340)
                      ......+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++....+..       |...|.+++|+|++++|++++.
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~  117 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-------RSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-------SSSCEEEEEECTTSSEEEEEET
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-------CCccEEEEEECCCCCEEEEEeC
Confidence            345577999999999999999999999999999999999988776555432       6688999999999999999999


Q ss_pred             CCcEEEEeCCCCc----eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482          133 DGHLRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (340)
Q Consensus       133 dg~i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (340)
                      |+.|++|++.+.+    ....+.+|...|.++.|++++. +++++.|++|++||+++++.+..+.. +...|.+++|+|+
T Consensus       118 d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~  195 (340)
T 1got_B          118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPD  195 (340)
T ss_dssp             TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTT
T ss_pred             CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCC
Confidence            9999999998753    3445667888999999998875 88999999999999999999888874 4568999999999


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG  288 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  288 (340)
                      +..     +++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+......
T Consensus       196 ~~~-----l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~  270 (340)
T 1got_B          196 TRL-----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII  270 (340)
T ss_dssp             SSE-----EEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred             CCE-----EEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence            986     789999999999999999999999999999999999999999999999999999999998876655322223


Q ss_pred             cceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       289 ~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      ..|.+++|+|++++|++|+.||.|++|++....   .......|...|.+|
T Consensus       271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~  318 (340)
T 1got_B          271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCL  318 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEE
T ss_pred             cceEEEEECCCCCEEEEECCCCeEEEEEcccCc---EeeEeecCCCcEEEE
Confidence            479999999999999999999999999986543   345566788777665

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.5e-44  Score=301.81  Aligned_cols=294  Identities=10%  Similarity=0.106  Sum_probs=231.5

Q ss_pred             CCceeEEeeeeec---CCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEE
Q 019482            3 GGGTVTCGSWIKR---PENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV   79 (340)
Q Consensus         3 ~~~~v~~~~w~~~---~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~   79 (340)
                      +..+|++++|.+.   +.+..++++|+      .|+.|++|++....... ........+.+|...|.+++|+|++.+++
T Consensus        20 H~~~V~~~~~~~s~~~~~d~~~l~sgs------~D~~v~iWd~~~~~~~~-~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           20 HSDWVTSIVAGFSQKENEDSPVLISGS------RDKTVMIWKLYEEEQNG-YFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             CSSCEEEEEECCCSSTTCCCCEEEEEE------TTSCEEEEEECSSCCSS-BSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             chhhhhheeeEEEeecCCCCCEEEEEc------CCCEEEEEECCcCCccc-ccccccchhccCCCceEEEEECCCCCEEE
Confidence            4678999999321   11456777766      56669999987433211 12344567899999999999999999999


Q ss_pred             EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee--ccccCccce
Q 019482           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--DEPKAHKSV  157 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~~~~i  157 (340)
                      +++.|+.|++||+.+++....+.       .|...|.+++|+|++++|++++.|+.|++||+.......  ....|...|
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~-------~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v  165 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFV-------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV  165 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEE-------CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred             EEcCCCcEEEEECCCCcEEEEEc-------CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCcee
Confidence            99999999999999887665554       378899999999999999999999999999997433221  122566789


Q ss_pred             eEEEecCCC----------CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          158 LDMDFSLDS----------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       158 ~~~~~~~~~----------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                      .+++|+|++          .+|++++.|+.|++||. ..+....+.. +...|.+++|+|++++     +++++.|+.|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~-h~~~v~~~~~s~~g~~-----l~sgs~dg~v~  238 (343)
T 2xzm_R          166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA-HESNVNHLSISPNGKY-----IATGGKDKKLL  238 (343)
T ss_dssp             EEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC-CSSCEEEEEECTTSSE-----EEEEETTCEEE
T ss_pred             eeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC-ccccceEEEECCCCCE-----EEEEcCCCeEE
Confidence            999999986          78999999999999994 5566666654 5568999999999997     78999999999


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee--ccc----------ccccccceeeEE
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSK----------RLHLGTSIALVE  295 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~----------~~~~~~~i~~~~  295 (340)
                      +||++..........+...|.+++|+|++.+++++ .|+.|++||+.+++...  .+.          ..| ...|.+++
T Consensus       239 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~  316 (343)
T 2xzm_R          239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSLA  316 (343)
T ss_dssp             EEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEEE
T ss_pred             EEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEEE
Confidence            99995443322333355679999999999888765 57789999998765433  211          134 46799999


Q ss_pred             EecCCeEEEEEecCCcEEEEEecC
Q 019482          296 FCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       296 ~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      |+|+|++|++|+.||.|++|+++.
T Consensus       317 ~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          317 WNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             ECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             ECCCCCeEEEecCCceEEEEEEEc
Confidence            999999999999999999999864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.1e-44  Score=300.91  Aligned_cols=270  Identities=12%  Similarity=0.154  Sum_probs=230.8

Q ss_pred             eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      ....++.+|.+.|++++|+|++++|++++.|+.|++||..+.+....+..       |...|.+++|+|++.+|++++.|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------~~~~v~~~~~sp~g~~lasg~~d  127 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-------PCTWVMACAYAPSGCAIACGGLD  127 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-------SSSCCCEEEECTTSSEEEEESTT
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-------CCCCEEEEEECCCCCEEEEeeCC
Confidence            34577999999999999999999999999999999999988766554432       55789999999999999999999


Q ss_pred             CcEEEEeCCCC------ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc
Q 019482          134 GHLRIMHWPSL------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       134 g~i~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~  207 (340)
                      +.+++|++...      .....+..|...|.++.|+|+++.|++++.|++|++||+++++.+..+..+ ...+.+++|+|
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~~~~~~  206 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-GADVLCLDLAP  206 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEEe
Confidence            99999998643      223345567789999999999999999999999999999999999888754 46799999988


Q ss_pred             C--CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          208 D--GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       208 ~--~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                      +  +..     +++++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+...
T Consensus       207 ~~~g~~-----l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~  281 (354)
T 2pbi_B          207 SETGNT-----FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKE  281 (354)
T ss_dssp             CSSCCE-----EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred             CCCCCE-----EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence            5  455     788999999999999999999999999999999999999999999999999999999988776554322


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      .....+.+++|+|++++|++++.|+.|++|++....   .......|.+.|.++
T Consensus       282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~---~~~~l~~h~~~v~~l  332 (354)
T 2pbi_B          282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS---RVSILFGHENRVSTL  332 (354)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---EEEEECCCSSCEEEE
T ss_pred             CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc---eEEEEECCCCcEEEE
Confidence            223478999999999999999999999999986443   344556788777665

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-43  Score=296.44  Aligned_cols=275  Identities=13%  Similarity=0.108  Sum_probs=223.8

Q ss_pred             eeeEEEecCCC-CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482           54 LVTYVFDESEG-DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        54 ~~~~~~~~h~~-~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  132 (340)
                      .....+.+|.. .|.+++|+|+|++||+++.|+.|+|||+.++........    ...|...|.+++|+|++++|++++.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~----~~~h~~~v~~~~~sp~g~~l~s~s~   81 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVL----SEGHQRTVRKVAWSPCGNYLASASF   81 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEE----CSSCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeee----ccccCCcEEEEEECCCCCEEEEEEC
Confidence            34567889988 899999999999999999999999999988754322211    1247889999999999999999999


Q ss_pred             CCcEEEEeCCCCc--eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCceeeEEEcc
Q 019482          133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~  207 (340)
                      |+.+++|++.++.  .+..+.+|...|.+++|+|++++|++++.|++|++||++++..   +..+. .+...|.+++|+|
T Consensus        82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p  160 (345)
T 3fm0_A           82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHP  160 (345)
T ss_dssp             TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECS
T ss_pred             CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECC
Confidence            9999999988764  4566778888999999999999999999999999999987643   33443 4556899999999


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc---------
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM---------  276 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------  276 (340)
                      ++..     +++++.|+.|++||.++++  ....+..|...|.+++|+|+|++|++++.|+.|++||....         
T Consensus       161 ~~~~-----l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~  235 (345)
T 3fm0_A          161 SQEL-----LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS  235 (345)
T ss_dssp             SSSC-----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred             CCCE-----EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence            9997     7899999999999998875  34667889999999999999999999999999999997432         


Q ss_pred             ------eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC------ccccccccccccC
Q 019482          277 ------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL------SLPLLHSHSQNSV  339 (340)
Q Consensus       277 ------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~h~~~v~~v  339 (340)
                            +++..+...| ...|.+++|+|++..|++++.|+.|++|+..........      .....|...|++|
T Consensus       236 ~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v  309 (345)
T 3fm0_A          236 GSDPSWKCICTLSGFH-SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV  309 (345)
T ss_dssp             ---CEEEEEEEECSSC-SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred             ccCCccceeEEecCCC-CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence                  2222232224 578999999999999999999999999999755422111      1234677777765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=9.8e-43  Score=291.24  Aligned_cols=288  Identities=14%  Similarity=0.129  Sum_probs=242.7

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      .+..+|++++|+|   +..++++++       ++.+++|+++.....   .........+|...|.+++|+|++++|+++
T Consensus        49 ~h~~~v~~~~~~~---~~~~l~~~~-------dg~i~iw~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  115 (337)
T 1gxr_A           49 NHGEVVCAVTISN---PTRHVYTGG-------KGCVKVWDISHPGNK---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVG  115 (337)
T ss_dssp             CCSSCCCEEEECS---SSSEEEEEC-------BSEEEEEETTSTTCC---SCSEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred             cCCCceEEEEEec---CCcEEEEcC-------CCeEEEEECCCCCce---eeeecccccCCCCcEEEEEEcCCCCEEEEE
Confidence            3567899999999   445666443       566999998754321   122223333799999999999999999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +.|+.|++||+.+.+........     .|...|.+++|+|++++|++++.||.|++||+++++....+..|...+.+++
T Consensus       116 ~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~  190 (337)
T 1gxr_A          116 GEASTLSIWDLAAPTPRIKAELT-----SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEEEEE-----CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             cCCCcEEEEECCCCCcceeeecc-----cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEE
Confidence            99999999999887632222111     2668899999999999999999999999999999998888888888999999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      |+|++++|++++.|+.|++||+++++.+..+.  +...+.+++|+|+++.     +++++.++.|++||+++++.. .+.
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~-----l~~~~~~~~i~~~~~~~~~~~-~~~  262 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLH  262 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EEC
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCE-----EEEEcCCCcEEEEECCCCCeE-EEc
Confidence            99999999999999999999999999888775  4567999999999987     778888999999999988764 567


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .+...+.+++|+|++++|++++.||.|++||+.+++.+...  .| ...+.+++|+|++++|++++.||.|++|++.
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cC-CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            78899999999999999999999999999999998877443  34 5789999999999999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.5e-43  Score=297.38  Aligned_cols=290  Identities=15%  Similarity=0.174  Sum_probs=240.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|++++|+|   +..++++|+      .++.|++|+++..      .......+.+|...|.+++|+|++++|++++
T Consensus         7 ~~~~i~~~~~s~---~~~~l~~~~------~d~~v~i~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   71 (372)
T 1k8k_C            7 LVEPISCHAWNK---DRTQIAICP------NNHEVHIYEKSGN------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCG   71 (372)
T ss_dssp             CSSCCCEEEECT---TSSEEEEEC------SSSEEEEEEEETT------EEEEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred             cCCCeEEEEECC---CCCEEEEEe------CCCEEEEEeCCCC------cEEeeeeecCCCCcccEEEEeCCCCEEEEEc
Confidence            467899999999   445677665      4667999998722      1125567889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce----eeccccCcccee
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----ILDEPKAHKSVL  158 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~i~  158 (340)
                      .|+.|++||+.+++.......     ..|...|.+++|+|++++|++++.|+.|++||++.++.    ......|...|.
T Consensus        72 ~dg~i~vwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~  146 (372)
T 1k8k_C           72 TDRNAYVWTLKGRTWKPTLVI-----LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  146 (372)
T ss_dssp             TTSCEEEEEEETTEEEEEEEC-----CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             CCCeEEEEECCCCeeeeeEEe-----ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence            999999999988764433321     23778999999999999999999999999999987762    222345667899


Q ss_pred             EEEecCCCCeEEEeeCCCeEEEEEcc------------------CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          159 DMDFSLDSEFLATTSTDGSARIWKTE------------------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      +++|+|++++|++++.|+.|++||++                  .++.+..+. .+...+.+++|+|++..     ++++
T Consensus       147 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~-----l~~~  220 (372)
T 1k8k_C          147 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSR-----VAWV  220 (372)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSE-----EEEE
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCE-----EEEE
Confidence            99999999999999999999999953                  567777776 45568999999999986     7888


Q ss_pred             CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC--ceE--e-----------------
Q 019482          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEI--N-----------------  279 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~~~--~-----------------  279 (340)
                      +.|+.|++||+++++.+..+..+..++.+++|+|++++++++ .|+.|++|++.+  ++.  .                 
T Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (372)
T 1k8k_C          221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR  299 (372)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred             eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchh
Confidence            999999999999999999999999999999999999988888 899999999988  421  0                 


Q ss_pred             -------------------ecccccccccceeeEEEe-cCC---eEEEEEecCCcEEEEEecCC
Q 019482          280 -------------------HWSKRLHLGTSIALVEFC-PTQ---RVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       280 -------------------~~~~~~~~~~~i~~~~~~-~~~---~~l~~~~~dg~i~iw~~~~~  320 (340)
                                         ..+..+| ..+|++++|. ++|   ++|++++.||.|++|++...
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          300 ERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             HHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             hhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                               2222356 6799999977 566   99999999999999999754

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.5e-43  Score=290.50  Aligned_cols=271  Identities=17%  Similarity=0.209  Sum_probs=230.3

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .......+.+|.+.|++++|+|++++|++++.|+.|++|++.+++....+.       .|...|.+++|+|++++|++++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~   84 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-------GHKLGISDVAWSSDSNLLVSAS   84 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECTTSSEEEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-------cCCCceEEEEEcCCCCEEEEEC
Confidence            455677889999999999999999999999999999999998877655443       3778999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      .|+.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+.+++|+|+++.
T Consensus        85 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~  163 (312)
T 4ery_A           85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSL  163 (312)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-CCCcEEEEEEcCCCCE
Confidence            999999999999998888888888999999999999999999999999999999998888864 4568999999999987


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc-c
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG-T  289 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~  289 (340)
                           +++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++++.|+.|++||+++++.+..+. .|.. .
T Consensus       164 -----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~  237 (312)
T 4ery_A          164 -----IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEK  237 (312)
T ss_dssp             -----EEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSS
T ss_pred             -----EEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCce
Confidence                 7888999999999999998776654 445679999999999999999999999999999998877653 3321 1


Q ss_pred             ceeeEEEe-cCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          290 SIALVEFC-PTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       290 ~i~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      ......++ +++.+|++|+.||.|++|++....   .......|...|.++
T Consensus       238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---~~~~~~~h~~~v~~~  285 (312)
T 4ery_A          238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE---IVQKLQGHTDVVIST  285 (312)
T ss_dssp             SCCCEEEECSSSCEEEECCTTSCEEEEETTTCC---EEEEECCCSSCEEEE
T ss_pred             EEEEEEEEeCCCcEEEEECCCCEEEEEECCCch---hhhhhhccCCcEEEE
Confidence            22333444 678999999999999999987544   344556676666544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-43  Score=289.23  Aligned_cols=255  Identities=14%  Similarity=0.122  Sum_probs=209.5

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCc--eeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccC
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV  132 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  132 (340)
                      ..+.+|.+.|++++|+|+|++||+|+.|+.|+|||+...  +....+.       .|.++|.+++|+|  ++++|++|+.
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-------gH~~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-------CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-------cccCCeEEEEecCCCcCCEEEEEcC
Confidence            357789999999999999999999999999999999753  2222222       3889999999986  4889999999


Q ss_pred             CCcEEEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEc
Q 019482          133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~  206 (340)
                      |++|++||+++++  .+..+..|...|.+++|+|+  +++|++++.|++|++||++++..  ...+. .+...+.+++|+
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~  154 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWA  154 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEEC
T ss_pred             CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeec
Confidence            9999999998764  44455667789999999997  88999999999999999987632  23333 456689999999


Q ss_pred             cCC-------------CcceEEEEEecCCcceEEEEECCCCc----EEeeeeccCCCeeEEEECCCC---CEEEEeeCCC
Q 019482          207 KDG-------------TKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDG---KYLAMGSKDG  266 (340)
Q Consensus       207 ~~~-------------~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg  266 (340)
                      |++             +.     +++++.|+.|++||+++++    ....+..|...|.+++|+|++   ++|++++.|+
T Consensus       155 p~~~~~~~~~~~~~~~~~-----l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          155 PATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             CCC------------CCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             CCcccccccCCCCCCcce-----EEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence            973             33     7889999999999998766    556778899999999999984   8999999999


Q ss_pred             cEEEEeccCce---Eeeccc-ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCC
Q 019482          267 DICVVDVKKME---INHWSK-RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKG  325 (340)
Q Consensus       267 ~i~i~d~~~~~---~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  325 (340)
                      .|++||+++..   ....+. ..| ...|.+++|+|++++|++++.||.|+||+....+.|..
T Consensus       230 ~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~  291 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEP  291 (297)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEe
Confidence            99999997742   111111 234 56899999999999999999999999999986665443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-42  Score=311.28  Aligned_cols=276  Identities=16%  Similarity=0.221  Sum_probs=236.1

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|.+++|+|+   ..++++++      .++.+++|+.+.         .....+.+|...|.+++|+|++++|++++
T Consensus       302 h~~~v~~~~~~~~---~~~l~t~~------~d~~i~~w~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  363 (577)
T 2ymu_A          302 HSSSVWGVAFSPD---GQTIASAS------DDKTVKLWNRNG---------QHLQTLTGHSSSVWGVAFSPDGQTIASAS  363 (577)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETTS---------CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCeEEEEECCC---CCEEEEEe------CCCeEEEEeCCC---------CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence            3578999999994   45666655      566699998652         12345788999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+.+++|+.. ++....+.       .|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|
T Consensus       364 ~dg~v~~~~~~-~~~~~~~~-------~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          364 DDKTVKLWNRN-GQLLQTLT-------GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             TTSEEEEEETT-CCEEEEEE-------CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred             CCCEEEEEcCC-CCEEEEec-------CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence            99999999964 33333332       27789999999999999999999999999995 56777778888889999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      +|++++|++++.|+.|++||. +++.+..+.. +...+.+++|+|+++.     +++++.|+.|++||. +++.+..+..
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~-~~~~v~~~~~spd~~~-----las~~~d~~i~iw~~-~~~~~~~~~~  506 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQT-----IASASDDKTVKLWNR-NGQLLQTLTG  506 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEET-TSCEEEEEEC-CSSCEEEEEECTTSCE-----EEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             CCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC-CCCCEEEEEEcCCCCE-----EEEEeCCCEEEEEcC-CCCEEEEEeC
Confidence            999999999999999999996 5667777764 4568999999999997     788899999999995 6788889999


Q ss_pred             cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      |...|++++|+|+|++|++++.||.|++||. +++.+..+ .+| ..+|++++|+|||++|++++.|+.|++||
T Consensus       507 h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~-~~h-~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGH-SSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE-cCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9999999999999999999999999999996 56666655 467 67999999999999999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.4e-42  Score=317.28  Aligned_cols=290  Identities=11%  Similarity=0.122  Sum_probs=239.0

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +...|+|++|+|+..  .++++|+      .|+.|++|++......   .......+.+|...|.+++|+|++++|++|+
T Consensus       381 H~~~V~~v~~~~~~~--~~l~s~s------~D~~i~~W~~~~~~~~---~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs  449 (694)
T 3dm0_A          381 HTDMVTAIATPIDNA--DIIVSAS------RDKSIILWKLTKDDKA---YGVAQRRLTGHSHFVEDVVLSSDGQFALSGS  449 (694)
T ss_dssp             CSSCEEEEECCTTCC--SEEEEEE------TTSEEEEEECCCSTTC---SCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCceeEEEEecCCCC--CEEEEEe------CCCcEEEEEccCCCcc---cccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence            567899999998643  5777666      5667999998754322   2344567899999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec---cccCccceeE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD---EPKAHKSVLD  159 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~---~~~~~~~i~~  159 (340)
                      .|+.|++||+.++.....+.       .|...|.+++|+|++++|++++.|++|++||+........   ...|...|.+
T Consensus       450 ~Dg~v~vwd~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~  522 (694)
T 3dm0_A          450 WDGELRLWDLAAGVSTRRFV-------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC  522 (694)
T ss_dssp             TTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred             CCCcEEEEECCCCcceeEEe-------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence            99999999999887766554       3788999999999999999999999999999865433222   2346678999


Q ss_pred             EEecCCC--CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE
Q 019482          160 MDFSLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (340)
Q Consensus       160 ~~~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  237 (340)
                      ++|+|++  ..+++++.|++|++||+++++....+.. |...|.+++|+|+++.     +++++.|+.|++||+++++.+
T Consensus       523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~-----l~sg~~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSL-----CASGGKDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSBCEEEETTTTEEE
T ss_pred             EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCE-----EEEEeCCCeEEEEECCCCceE
Confidence            9999986  5799999999999999999988888764 4568999999999997     789999999999999999887


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc-----------------ccceeeEEEecCC
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-----------------GTSIALVEFCPTQ  300 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~~  300 (340)
                      ..+.. ...+.+++|+|++.++++++ ++.|++||+++++.+..+.....                 ...+++++|+|||
T Consensus       597 ~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          597 YSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             ECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             EEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            66654 45799999999998888775 56699999999887655421100                 1137899999999


Q ss_pred             eEEEEEecCCcEEEEEec
Q 019482          301 RVVLTASKEWGAMITKLT  318 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~  318 (340)
                      ++|++|+.||.|+||++.
T Consensus       675 ~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          675 STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEecc
Confidence            999999999999999984

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.2e-43  Score=297.92  Aligned_cols=287  Identities=16%  Similarity=0.207  Sum_probs=231.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~   81 (340)
                      +..+|+|++|+|+..  .++++|+      .++.|++|++....      ......+.+|...|.+++|+| ++++|+++
T Consensus        72 h~~~v~~~~~~~~~~--~~l~s~~------~dg~i~iwd~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           72 FDRRVTSLEWHPTHP--TTVAVGS------KGGDIILWDYDVQN------KTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             CSSCEEEEEECSSCT--TEEEEEE------BTSCEEEEETTSTT------CEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             CCCCEEEEEECCCCC--CEEEEEc------CCCeEEEEeCCCcc------cceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            457899999999542  5677666      56679999987322      222233457999999999999 78999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +.|+.|++||+.+... ..+...    ..+...|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.+++
T Consensus       138 ~~d~~i~iwd~~~~~~-~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          138 SIRGATTLRDFSGSVI-QVFAKT----DSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             ETTTEEEEEETTSCEE-EEEECC----CCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred             eCCCEEEEEECCCCce-EEEecc----CCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence            9999999999986432 222211    125578999999999999999999999999998 5677777888889999999


Q ss_pred             ecCCCC-eEEEeeCCCeEEEEEccC----CeeEEEeecCCCCceeeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          162 FSLDSE-FLATTSTDGSARIWKTED----GVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       162 ~~~~~~-~l~~~~~d~~v~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      |+|+++ +|++++.|+.|++||+++    +..+..+  .+...+.+++|+| ++..     +++++.|+.|++||+++++
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~-----l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTK-----LLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCE-----EEEEESSSEEEEEETTBTT
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCE-----EEEEcCCCcEEEEECCCCc
Confidence            999998 899999999999999998    5666666  3567899999999 9987     7888999999999999887


Q ss_pred             EEeeeeccC-----------------CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          236 KIGHKRLLR-----------------KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       236 ~~~~~~~~~-----------------~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      .+..+..+.                 ..+..++|+|++++  +++.|+.|++||+.+++.+..+...++...+..++|+|
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~  362 (383)
T 3ei3_B          285 KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP  362 (383)
T ss_dssp             SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred             cccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence            766665442                 23445667777776  77899999999999999887775433356777789999


Q ss_pred             CCeEEEEEecCCcEEEEEecC
Q 019482          299 TQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ++++|++++ ||.|++|+++.
T Consensus       363 ~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          363 TGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TSSEEEEEE-TTEEEEEECC-
T ss_pred             CccEEEEec-CCcEEEEecCC
Confidence            999999997 99999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=9.4e-43  Score=298.11  Aligned_cols=291  Identities=13%  Similarity=0.062  Sum_probs=242.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC----C---
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----G---   75 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~---   75 (340)
                      +..+|+|++|+|     .++++|+      .++.|++|+++......  .......+.+|...|.+++|+|+    +   
T Consensus        15 h~~~i~~~~~~~-----~~l~s~~------~dg~i~iw~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~   81 (397)
T 1sq9_A           15 HDADIFSVSACN-----SFTVSCS------GDGYLKVWDNKLLDNEN--PKDKSYSHFVHKSGLHHVDVLQAIERDAFEL   81 (397)
T ss_dssp             SSSCEEEEEECS-----SEEEEEE------TTSEEEEEESBCCTTCC--GGGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             hhcCeEEEEecC-----CeEEEEc------CCCEEEEEECCCccccc--CCCcceEEecCCCcEEEEEEecccccCCccc
Confidence            467999999988     3566555      56779999997543221  22345667899999999999999    9   


Q ss_pred             CeEEEEecCCCEEEEEecCcee-----eeeeccccCCCCCC-----CCCeEEEEEe----cCCCe-EEEccCCCcEEEEe
Q 019482           76 DDFVCSTTNGGCKLFEVYGGAT-----DINLLAKKMPPLQD-----AGPQKCLSFS----VDGSR-FAAGGVDGHLRIMH  140 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~~~d  140 (340)
                      ++|++++.|+.|++|++.+.+.     ...+..       |     ...|.+++|+    |++++ |++++.||.|++||
T Consensus        82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  154 (397)
T 1sq9_A           82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDL-------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  154 (397)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECC-------SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             cEEEEEcCCCCEEEEEccCCcccccccceeecc-------cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence            9999999999999999987764     333221       3     4899999999    99999 99999999999999


Q ss_pred             CCC------Cceee-----cc-------ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC--C---C
Q 019482          141 WPS------LRIIL-----DE-------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--S---D  197 (340)
Q Consensus       141 ~~~------~~~~~-----~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~---~  197 (340)
                      +++      ++.+.     .+       ..+...|.+++|+|++ ++++++.|+.|++||+++++.+..+...  +   .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~  233 (397)
T 1sq9_A          155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  233 (397)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence            988      66554     44       3366789999999999 9999999999999999999998888751  3   5


Q ss_pred             CceeeEEEccCCCcceEEEEEecCCc---ceEEEEECCCCcEEeeeec-------------cCCCeeEEEECCCCCEEEE
Q 019482          198 EKIELCRFSKDGTKPFLFCTVQRGDK---ALLAVYDISTWNKIGHKRL-------------LRKPASVLSISLDGKYLAM  261 (340)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~  261 (340)
                      ..+.+++|+|++..     +++++.|   +.|++||+++++.+..+..             |...|.+++|+|++++|++
T Consensus       234 ~~i~~i~~~~~~~~-----l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  308 (397)
T 1sq9_A          234 NSIRSVKFSPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS  308 (397)
T ss_dssp             CCEEEEEECSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE
T ss_pred             CccceEEECCCCCE-----EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE
Confidence            68999999999987     6788888   9999999999999988888             8999999999999999999


Q ss_pred             eeCCCcEEEEeccCceEeecccc-----cc--------------cccceeeEEEecCC----------eEEEEEecCCcE
Q 019482          262 GSKDGDICVVDVKKMEINHWSKR-----LH--------------LGTSIALVEFCPTQ----------RVVLTASKEWGA  312 (340)
Q Consensus       262 ~~~dg~i~i~d~~~~~~~~~~~~-----~~--------------~~~~i~~~~~~~~~----------~~l~~~~~dg~i  312 (340)
                      ++.||.|++||+++++.+..+..     .|              +..+|.+++|+|++          ++|++++.||.|
T Consensus       309 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          309 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             EeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcE
Confidence            99999999999999988877641     22              15689999999998          799999999999


Q ss_pred             EEEEecC
Q 019482          313 MITKLTV  319 (340)
Q Consensus       313 ~iw~~~~  319 (340)
                      ++|++..
T Consensus       389 ~iw~~~~  395 (397)
T 1sq9_A          389 RWFREAG  395 (397)
T ss_dssp             EEEEEEC
T ss_pred             EEEEcCC
Confidence            9999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-44  Score=311.48  Aligned_cols=307  Identities=13%  Similarity=0.158  Sum_probs=232.7

Q ss_pred             CCceeEEeeeeecCC------CccEEEEcCCC-------------CcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC
Q 019482            3 GGGTVTCGSWIKRPE------NVNLVVLGKSS-------------RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE   63 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~------~~~~~~~g~~~-------------~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~   63 (340)
                      .+++|.|++|+|++.      ..+++|+|...             .+++.|+.|+||+++....    .......+.+|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~----~~~~~~~l~~~~  207 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL----HCVKVQTIVHSF  207 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC----CEEEEEEEEECC
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC----CceEEEEEEecC
Confidence            368999999999762      22677776643             2356789999999874321    111234567888


Q ss_pred             CCeeEEEEcCC------CCeEEEEecCCCEEEEEecCceeeee---ecccc-CCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           64 GDPMTIAVNPS------GDDFVCSTTNGGCKLFEVYGGATDIN---LLAKK-MPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        64 ~~v~~~~~~~~------~~~l~~~~~d~~i~iw~~~~~~~~~~---~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      +.|.+++|+|+      +.+||+++.||+|++||+..+.....   ..... .....|...|.+++|++++ .|++|+.|
T Consensus       208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D  286 (524)
T 2j04_B          208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN  286 (524)
T ss_dssp             CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred             CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence            99999999997      57999999999999999976542200   00000 0012377899999999864 89999999


Q ss_pred             CcEEEEeCCCCce-eeccccCccceeEE--EecCCC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCC-CceeeEEEccC
Q 019482          134 GHLRIMHWPSLRI-ILDEPKAHKSVLDM--DFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKD  208 (340)
Q Consensus       134 g~i~~~d~~~~~~-~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~  208 (340)
                      |+|++||+++++. ...+..|...|.++  .|+|++ ++|++++.|++|+|||+++++++..+..+.. ..+.+++|+|+
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~  366 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ  366 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred             CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence            9999999987643 34467788899999  578887 8999999999999999998887766654433 24889999999


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc-----e------
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-----E------  277 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~------  277 (340)
                      +..     +++++.|+.|++||++++..+..+..|...|++++|+|+|++|++|+.||.|++||+...     +      
T Consensus       367 ~~~-----l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~  441 (524)
T 2j04_B          367 IYS-----YIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQ  441 (524)
T ss_dssp             TTE-----EEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------C
T ss_pred             cCe-----EEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccce
Confidence            986     788889999999999999888888899999999999999999999999999999986321     0      


Q ss_pred             ---Ee-ec----------------------------ccccccccceeeEEEecCCe---EEEEEecCCcEEEEEecCC
Q 019482          278 ---IN-HW----------------------------SKRLHLGTSIALVEFCPTQR---VVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       278 ---~~-~~----------------------------~~~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~  320 (340)
                         .+ ..                            ...+| ...|.+++|+|+++   ++|+|+.||.|+||++...
T Consensus       442 ~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          442 KSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CCCEEEECBCCSSSCEEEECCCCCCCC-------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             eeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence               00 00                            00123 46899999999964   9999999999999998644

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-43  Score=301.57  Aligned_cols=276  Identities=13%  Similarity=0.147  Sum_probs=229.3

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .......+.+|.+.|++++|+|++++|++|+.|++|++||+.+++....+..       |...|.+++|+|++++|++|+
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-------h~~~v~~~~~s~~g~~las~~  127 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-------HCPWVMECAFAPNGQSVACGG  127 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-------CCTTCCCCEECTTSSEEEECC
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-------CCCCEEEEEECCCCCEEEEee
Confidence            4556678999999999999999999999999999999999998877655543       678899999999999999999


Q ss_pred             CCCcEEEEeCCCCc-------eeeccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEee----cCCCCc
Q 019482          132 VDGHLRIMHWPSLR-------IILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEK  199 (340)
Q Consensus       132 ~dg~i~~~d~~~~~-------~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~  199 (340)
                      .|+.+++||+.+..       ....+.+|...+.++.|.|+ +..|++|+.|++|++||+++++.+..+.    ..+...
T Consensus       128 ~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~  207 (380)
T 3iz6_a          128 LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD  207 (380)
T ss_dssp             SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred             CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence            99999999987532       23345677788999999996 4579999999999999999999887663    345567


Q ss_pred             eeeEEEcc-CCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          200 IELCRFSK-DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       200 v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      +.+++|++ ++..     +++++.|+.|++||++ ..+.+..+..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus       208 v~~~~~~~~~~~~-----l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          208 VLSLSINSLNANM-----FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             EEEEEECSSSCCE-----EEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             eEEEEeecCCCCE-----EEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            99999987 5665     7899999999999998 456777888999999999999999999999999999999999998


Q ss_pred             Eeeccccccc-----ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC-ccccccccccccC
Q 019482          278 INHWSKRLHL-----GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL-SLPLLHSHSQNSV  339 (340)
Q Consensus       278 ~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~h~~~v~~v  339 (340)
                      .+..+.....     ...|++++|+|+|++|++|+.||.|++|++........+ .....|.+.|+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence            8765532211     124899999999999999999999999998655432221 2335688777765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-43  Score=302.14  Aligned_cols=296  Identities=14%  Similarity=0.170  Sum_probs=242.5

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCC----cccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEE
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC   80 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~   80 (340)
                      .+|.+++|+|+..  .++++|...+    +.+.++.|++|++......     .... ...|...|.+++|+|++++|++
T Consensus        13 ~~v~~~~~sp~g~--~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~-----~~~~-~~~~~~~v~~~~~s~~~~~l~~   84 (416)
T 2pm9_A           13 SRTATFAWSHDKI--PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-----KPIA-SLQVDSKFNDLDWSHNNKIIAG   84 (416)
T ss_dssp             EESCBCCBCSSSS--CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC-----SCSC-CCCCSSCEEEEEECSSSSCEEE
T ss_pred             hhcceEeeCCCCC--CEEEEEecCcccccccCCCCeEEEEEccCCCCC-----cEEE-EEecCCceEEEEECCCCCeEEE
Confidence            5789999999533  4788775433    1147888999998743211     0111 1248889999999999999999


Q ss_pred             EecCCCEEEEEecCc----eeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCc------eeec
Q 019482           81 STTNGGCKLFEVYGG----ATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLR------IILD  149 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~------~~~~  149 (340)
                      ++.|+.|++||+...    +....+.       .|...|.+++|+|+ +++|++++.|+.|++||+.+++      ....
T Consensus        85 ~~~dg~v~vw~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~  157 (416)
T 2pm9_A           85 ALDNGSLELYSTNEANNAINSMARFS-------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT  157 (416)
T ss_dssp             EESSSCEEEECCSSTTSCCCEEEECC-------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred             EccCCeEEEeecccccccccchhhcc-------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence            999999999999872    2222221       37789999999998 8999999999999999999876      3322


Q ss_pred             ---cccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCC-----CCceeeEEEccCCCcceEEEEEec
Q 019482          150 ---EPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       150 ---~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                         ...|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+.     ...+.+++|+|++...    ++++
T Consensus       158 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----l~~~  233 (416)
T 2pm9_A          158 PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR----VATA  233 (416)
T ss_dssp             CCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE----EEEE
T ss_pred             cccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE----EEEE
Confidence               3456778999999998 7899999999999999999999988887543     5689999999998542    6777


Q ss_pred             CCcc---eEEEEECCCC-cEEeeee-ccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeE
Q 019482          221 GDKA---LLAVYDISTW-NKIGHKR-LLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV  294 (340)
Q Consensus       221 ~~d~---~i~i~d~~~~-~~~~~~~-~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~  294 (340)
                      +.|+   .|++||++++ .++..+. .|...+.+++|+| ++++|++++.||.|++||+++++.+..+. .| ...|.++
T Consensus       234 ~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~-~~~v~~~  311 (416)
T 2pm9_A          234 TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP-AR-GNWCFKT  311 (416)
T ss_dssp             ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE-CS-SSCCCCE
T ss_pred             ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec-CC-CCceEEE
Confidence            7787   9999999986 5666677 7889999999999 99999999999999999999998887664 55 5789999


Q ss_pred             EEecCC-eEEEEEecCCcEEEEEecCCC
Q 019482          295 EFCPTQ-RVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       295 ~~~~~~-~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +|+|++ .+|++++.||.|++|++....
T Consensus       312 ~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          312 KFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             EECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            999999 899999999999999997654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.9e-41  Score=283.94  Aligned_cols=291  Identities=12%  Similarity=0.143  Sum_probs=240.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +.++|+|++|+|+.+  .++++|+      .|+.|++|++......   .......+.+|...|.+++|+|++++|++++
T Consensus        37 H~~~V~~v~~sp~~~--~~l~S~s------~D~~i~vWd~~~~~~~---~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           37 HNGWVTQIATTPQFP--DMILSAS------RDKTIIMWKLTRDETN---YGIPQRALRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             CSSCEEEEEECTTCT--TEEEEEE------TTSCEEEEEECCSSSC---SEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccCCEEEEEEeCCCC--CEEEEEc------CCCeEEEEECCCCCcc---cceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence            468899999999643  6788776      5667999999754322   2345567899999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-eccccCccceeEEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHKSVLDMD  161 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-~~~~~~~~~i~~~~  161 (340)
                      .|+.|++|+............       +...+....+++++++|++++.|+.+++||+...... .....|...+..++
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~  178 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVG-------HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR  178 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred             ccccceEEeecccceeeeecC-------CCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence            999999999988776554432       5578889999999999999999999999998765543 34456667899999


Q ss_pred             ecCCC--CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          162 FSLDS--EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       162 ~~~~~--~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      |++++  .++++++.|+.|++||+++++.+..+.. +...|.+++|+|+++.     +++++.|+.|++||+++.+.+..
T Consensus       179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~-----l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSL-----CASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTCEEEEEETTTTEEEEE
T ss_pred             EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEECCCCCE-----EEEEeCCCeEEEEEeccCceeee
Confidence            98864  4688999999999999999999888875 4568999999999997     78899999999999999998877


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc--------ccccccceeeEEEecCCeEEEEEecCCc
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK--------RLHLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                      +..+ ..+.++.|+|++.++ +++.|+.|++||++++.....+.        ..| ...|++++|+||+++|++|+.||.
T Consensus       253 ~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          253 LDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             EECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSC
T ss_pred             ecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCE
Confidence            7654 579999999987655 55679999999999877654432        234 568999999999999999999999


Q ss_pred             EEEEEecCC
Q 019482          312 AMITKLTVP  320 (340)
Q Consensus       312 i~iw~~~~~  320 (340)
                      |+||++...
T Consensus       330 v~iW~~~tG  338 (340)
T 4aow_A          330 VRVWQVTIG  338 (340)
T ss_dssp             EEEEEEEC-
T ss_pred             EEEEeCCCc
Confidence            999999754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.7e-43  Score=306.14  Aligned_cols=291  Identities=16%  Similarity=0.170  Sum_probs=227.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEe
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~   82 (340)
                      ..+|+|++|+|..+  .+||+|+      .++.|++|+++...      ......+.+|.+.|++++|+| ++.+|++++
T Consensus       119 ~~~V~~l~~~P~~~--~~lasGs------~dg~i~lWd~~~~~------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          119 DRRATSLAWHPTHP--STVAVGS------KGGDIMLWNFGIKD------KPTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             SSCEEEEEECSSCT--TCEEEEE------TTSCEEEECSSCCS------CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCEEEEEEeCCCC--CEEEEEe------CCCEEEEEECCCCC------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            45799999999543  5777776      56669999886432      223345678999999999998 688999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|++|++||+++.........     ..+...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+++|
T Consensus       185 ~D~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVFASS-----DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             SSSCEEEEETTSCEEEEEECC-----SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEE
T ss_pred             CCCEEEEeeccCCceeEEecc-----CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeee
Confidence            999999999987654322211     12445678999999999999999999999999864 556677788889999999


Q ss_pred             cCCCC-eEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          163 SLDSE-FLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       163 ~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      +|+++ +|++++.|+.|++||+++.+....+.  ..|...|.+++|+|++.+     +++++.|+.|++||+++++....
T Consensus       259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-----l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-----LLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-----EEEEESSSCEEEEESSSSSSEEE
T ss_pred             cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe-----eEEEcCCCEEEEEECCCCccceE
Confidence            99876 68899999999999998876544332  345678999999999997     78999999999999999887666


Q ss_pred             eeccCC------CeeEEEECCCCCEEEEee------------CCCcEEEEeccCceEeecccccccccceeeE-EEecCC
Q 019482          240 KRLLRK------PASVLSISLDGKYLAMGS------------KDGDICVVDVKKMEINHWSKRLHLGTSIALV-EFCPTQ  300 (340)
Q Consensus       240 ~~~~~~------~i~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~-~~~~~~  300 (340)
                      +..+..      ......|+|++.++++++            .++.|++||..+++.+..+...| ...|.++ +|+|+|
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg  412 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMG  412 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTS
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCC
Confidence            655432      233456777777766654            34579999999999888776566 5678887 699999


Q ss_pred             eEEEEEecCCcEEEEEecCCC
Q 019482          301 RVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ++|++|+ |+.|+||+++...
T Consensus       413 ~~lasg~-d~~i~iW~~~~gk  432 (435)
T 4e54_B          413 DTLASAM-GYHILIWSQQEAR  432 (435)
T ss_dssp             SCEEEEC-SSEEEECCCC---
T ss_pred             CEEEEEc-CCcEEEEECCcCe
Confidence            9999876 7899999987543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-43  Score=293.24  Aligned_cols=258  Identities=13%  Similarity=0.121  Sum_probs=206.0

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccC
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGV  132 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~  132 (340)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|++||+.++..  ...+.       .|.++|.+++|+|  ++++|++++.
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-------gH~~~V~~v~~~~~~~~~~l~s~s~   79 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-------GHEGPVWQVAWAHPMYGNILASCSY   79 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEECCGGGSSCEEEEET
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-------CCCccEEEEEeCCCCCCCEEEEEEC
Confidence            45678999999999999999999999999999999987643  22222       3889999999986  4899999999


Q ss_pred             CCcEEEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCeeE--EEeecCCCCceeeEEEc
Q 019482          133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAW--TFLTRNSDEKIELCRFS  206 (340)
Q Consensus       133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~  206 (340)
                      |++|++||+++++  ....+.+|...|.+++|+|+  +.+|++++.|++|++||++.+...  ......+...+.+++|+
T Consensus        80 D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~  159 (316)
T 3bg1_A           80 DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA  159 (316)
T ss_dssp             TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred             CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEc
Confidence            9999999998764  45556678889999999997  789999999999999999876332  22223455679999999


Q ss_pred             cCC-----------------CcceEEEEEecCCcceEEEEECCCC---cEEeeeeccCCCeeEEEECCCC----CEEEEe
Q 019482          207 KDG-----------------TKPFLFCTVQRGDKALLAVYDISTW---NKIGHKRLLRKPASVLSISLDG----KYLAMG  262 (340)
Q Consensus       207 ~~~-----------------~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~----~~l~~~  262 (340)
                      |+.                 +.     +++++.|+.|++||++..   +.+..+..|...|.+++|+|++    ++|+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~-----l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKR-----FASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             CCCCC------CCSCCCCCCCB-----EECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             cccCCccccccccccCccccce-----EEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence            983                 33     789999999999999765   4566788899999999999986    899999


Q ss_pred             eCCCcEEEEeccCc---eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCc
Q 019482          263 SKDGDICVVDVKKM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLS  327 (340)
Q Consensus       263 ~~dg~i~i~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~  327 (340)
                      +.|+.|++||+.+.   +........| ...|.+++|+|++++|++++.|+.|++|+......+....
T Consensus       235 s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~  301 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCIS  301 (316)
T ss_dssp             ETTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEE
T ss_pred             cCCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEee
Confidence            99999999998762   1111122344 5789999999999999999999999999997666554443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-42  Score=288.76  Aligned_cols=284  Identities=14%  Similarity=0.084  Sum_probs=243.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|++++|+|   +..++++|+      .++.|.+|++.        .......+.+|...|.+++|+|++++|++++
T Consensus        31 h~~~v~~~~~s~---~~~~l~~~~------~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           31 HERPLTQVKYNK---EGDLLFSCS------KDSSASVWYSL--------NGERLGTLDGHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             CSSCEEEEEECT---TSCEEEEEE------SSSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeceEEEEEEcC---CCCEEEEEe------CCCEEEEEeCC--------CchhhhhhhhcCCcEEEEEEcCCCCEEEEEe
Confidence            467899999999   445677665      56669999987        4445567889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCCCCce-----------
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRI-----------  146 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~-----------  146 (340)
                      .|+.|++||+.+++....+.        +...+.+++|+|+++++++++.+     +.|++||+.....           
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~  165 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVATWK--------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP  165 (369)
T ss_dssp             TTTEEEEEETTTCCEEEEEE--------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred             CCCeEEEEECCCCcEEEEee--------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence            99999999999887655543        55789999999999999999988     9999999876532           


Q ss_pred             eeccccCcc--ceeEEEecCCCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          147 ILDEPKAHK--SVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       147 ~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      ...+..+..  .+.+++|+|++++|++++.|+.|++||+++ .+.+..+.. +...+.+++|+|++..     +++++.|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-----l~~~~~d  239 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTY-----FITSSRD  239 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSE-----EEEEETT
T ss_pred             eeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCE-----EEEecCC
Confidence            223333444  899999999999999999999999999998 677776664 4568999999999987     7888899


Q ss_pred             ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC--------------cEEEEeccCceEeeccccccccc
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--------------DICVVDVKKMEINHWSKRLHLGT  289 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~  289 (340)
                      +.|++||+++++.+..+. +...+..++|+|+++++++++.++              .+++||+.+++.+..+ ..| ..
T Consensus       240 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~-~~  316 (369)
T 3zwl_B          240 TNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV-QGH-FG  316 (369)
T ss_dssp             SEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-ECC-SS
T ss_pred             ceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-ecc-cC
Confidence            999999999999887776 677899999999999999999888              8999999999888766 356 57


Q ss_pred             ceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      .|.+++|+|++++|++++.||.|++|+++..
T Consensus       317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          317 PLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            9999999999999999999999999999754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.1e-42  Score=308.13  Aligned_cols=295  Identities=16%  Similarity=0.203  Sum_probs=248.1

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ...+|.+++|+|+   ...+++++      .++.+++|+.+         ......+.+|...|.+++|+|++++|++++
T Consensus       261 ~~~~v~~v~~~~d---~~~l~~~~------~d~~i~~w~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~  322 (577)
T 2ymu_A          261 HSSSVNGVAFRPD---GQTIASAS------DDKTVKLWNRN---------GQLLQTLTGHSSSVWGVAFSPDGQTIASAS  322 (577)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEE------TTSCEEEEETT---------SCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEEcCC---CCEEEEEe------CCCEEEEEeCC---------CcEEEEEecCCCCeEEEEECCCCCEEEEEe
Confidence            4578999999994   45666555      56669999854         223456789999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+.|++||....... .+.       .|...+.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|
T Consensus       323 ~d~~i~~w~~~~~~~~-~~~-------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~  393 (577)
T 2ymu_A          323 DDKTVKLWNRNGQHLQ-TLT-------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF  393 (577)
T ss_dssp             TTSCEEEEETTSCEEE-EEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEE
T ss_pred             CCCeEEEEeCCCCeeE-EEe-------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEE
Confidence            9999999998765432 221       36789999999999999999999999999995 56777778888889999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      +|++++|++++.|+.|++||. +++.+..+.. +...|.+++|+|+++.     +++++.|+.|++||. +++.+..+..
T Consensus       394 s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~-----l~~~~~d~~v~~w~~-~~~~~~~~~~  465 (577)
T 2ymu_A          394 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQT-----IASASDDKTVKLWNR-NGQLLQTLTG  465 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTSSE-----EEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             CCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCCCE-----EEEEcCCCEEEEEEC-CCCEEEEEcC
Confidence            999999999999999999995 5677777764 4568999999999997     788899999999996 5677788899


Q ss_pred             cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      |...+.+++|+|++++|++++.|+.|++||. +++.+..+ ..| ...|++++|+||+++|++++.||.|++|+..  . 
T Consensus       466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~-~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--~-  539 (577)
T 2ymu_A          466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRN--G-  539 (577)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE-ECC-SSCEEEEEECTTSSCEEEEETTSEEEEECTT--S-
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE-eCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCC--C-
Confidence            9999999999999999999999999999996 56666555 456 5799999999999999999999999999953  2 


Q ss_pred             CCCCccccccccccccC
Q 019482          323 WKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       323 ~~~~~~~~~h~~~v~~v  339 (340)
                       +.+.....|...|.+|
T Consensus       540 -~~~~~~~~h~~~v~~~  555 (577)
T 2ymu_A          540 -QLLQTLTGHSSSVWGV  555 (577)
T ss_dssp             -CEEEEEECCSSCEEEE
T ss_pred             -CEEEEEcCCCCCEEEE
Confidence             3455667888888765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-43  Score=303.38  Aligned_cols=284  Identities=13%  Similarity=0.120  Sum_probs=231.4

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      +++++|+|+   +.++++|+      .++.+.+|++.....        ...+..| ..+....|+|++++|++++.|+.
T Consensus        59 ~~~~~~s~~---g~~l~~~~------~d~~v~i~d~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~  120 (420)
T 3vl1_A           59 GKGNTFEKV---GSHLYKAR------LDGHDFLFNTIIRDG--------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGD  120 (420)
T ss_dssp             CTTCEEEEE---ETTEEEEE------ETTEEEEEECCSEET--------TTTSCSC-CEEEEEEECSSSCEEEEEETTSC
T ss_pred             ccceeeeec---CCeEEEEE------cCCcEEEEEecccce--------eeEEecC-CceEEEEEecCCCEEEEEECCCC
Confidence            457899995   34556555      567799999863221        1223334 34555578999999999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCC
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  166 (340)
                      |++||+.+++....+.       .|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|...|.+++|+|++
T Consensus       121 i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          121 IKVLDSNFNLQREIDQ-------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG  193 (420)
T ss_dssp             EEEECTTSCEEEEETT-------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred             EEEEeCCCcceeeecc-------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence            9999998776544332       378999999999999999999999999999999999888888888999999999999


Q ss_pred             CeEEEeeCCCeEEEEEccCCeeEEEeecC--C---------------------CCceeeEEEccCCCcceEEEEEecCCc
Q 019482          167 EFLATTSTDGSARIWKTEDGVAWTFLTRN--S---------------------DEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       167 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~---------------------~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      ++|++++.|+.|++||+++++.+..+..+  +                     ...+.+++|+|+++.     +++++.|
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~~~~d  268 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY-----VIAGHVS  268 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE-----EEEEETT
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE-----EEEEcCC
Confidence            99999999999999999999988887642  1                     234556667888876     7888999


Q ss_pred             ceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCceE-eecccccccccceeeEEEecCC
Q 019482          224 ALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~  300 (340)
                      +.|++||+++++.+..+. .+...+.+++|+|+++ +|++++.||.|++||+++++. +..+ ..|+...+..+.| +++
T Consensus       269 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~~~v~~~~~-~~~  346 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF-LINEGTPINNVYF-AAG  346 (420)
T ss_dssp             SCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-EESTTSCEEEEEE-ETT
T ss_pred             CeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh-hccCCCCceEEEe-CCC
Confidence            999999999998776664 4678999999999998 999999999999999998754 4444 3434678888855 678


Q ss_pred             eEEEEEecCCcEEEEEecCCCC
Q 019482          301 RVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      ++|++++.||.|++|++..+..
T Consensus       347 ~~l~s~~~d~~v~iw~~~~~~~  368 (420)
T 3vl1_A          347 ALFVSSGFDTSIKLDIISDPES  368 (420)
T ss_dssp             EEEEEETTTEEEEEEEECCTTC
T ss_pred             CEEEEecCCccEEEEeccCCCC
Confidence            9999999999999999987644

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2e-43  Score=298.75  Aligned_cols=291  Identities=12%  Similarity=0.153  Sum_probs=233.6

Q ss_pred             CCceeEEeeeeecC--CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC----CC
Q 019482            3 GGGTVTCGSWIKRP--ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS----GD   76 (340)
Q Consensus         3 ~~~~v~~~~w~~~~--~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~   76 (340)
                      +..+|++++|+|..  .+..+++       ++.++.|.+|++......   ..........|...|.+++|+|+    +.
T Consensus        17 h~~~v~~i~~~p~~~~~~~~~~~-------~~~~~~v~vw~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   86 (366)
T 3k26_A           17 HNQPLFGVQFNWHSKEGDPLVFA-------TVGSNRVTLYECHSQGEI---RLLQSYVDADADENFYTCAWTYDSNTSHP   86 (366)
T ss_dssp             TCSCEEEEEECTTCCTTSCEEEE-------EEETTEEEEEEECGGGCE---EEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred             CCCceEEEEEecccCCCCceEEE-------ECCCCEEEEEEcCCCcEE---EeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence            46899999999952  2233555       224456999998732211   01111112237788999999998    67


Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeecc---cc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDE---PK  152 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~  152 (340)
                      +|++++.||.|++||+.+++....+.       .|...|.+++|+| ++++|++++.||.|++||+++++....+   ..
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  159 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYV-------GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG  159 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEE-------SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred             EEEEecCCCEEEEEEchhceEeeeec-------CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence            99999999999999999887665553       2778999999999 8999999999999999999998887766   56


Q ss_pred             CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec---------------------------CCCCceeeEEE
Q 019482          153 AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---------------------------NSDEKIELCRF  205 (340)
Q Consensus       153 ~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---------------------------~~~~~v~~~~~  205 (340)
                      |...|.+++|+|++++|++++.|+.|++||+++++....+..                           .+...|.+++|
T Consensus       160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  239 (366)
T 3k26_A          160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW  239 (366)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred             ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence            778999999999999999999999999999987655433221                           25678999999


Q ss_pred             ccCCCcceEEEEEecCCcceEEEEECCCCcE--------------EeeeeccCCCeeEEEECCC--CCEEEEeeCCCcEE
Q 019482          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNK--------------IGHKRLLRKPASVLSISLD--GKYLAMGSKDGDIC  269 (340)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~  269 (340)
                      +  +..     +++++.|+.|++||+++++.              +..+..+...+.+++|+|+  +++|++++.||.|+
T Consensus       240 ~--~~~-----l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~  312 (366)
T 3k26_A          240 L--GDL-----ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLY  312 (366)
T ss_dssp             E--TTE-----EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEE
T ss_pred             c--CCE-----EEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEE
Confidence            9  444     78899999999999987644              6777888889999999999  99999999999999


Q ss_pred             EEeccCceEee----cccccc-cccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          270 VVDVKKMEINH----WSKRLH-LGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       270 i~d~~~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +||+.+++...    .+ ..| +...|++++|+|++++|++++.||.|++|++.
T Consensus       313 vwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          313 VWDLEVEDPHKAKCTTL-THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEECCSSSGGGCEEEEE-CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEECCCCCCccccceEE-cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999876432    22 222 14789999999999999999999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-43  Score=301.05  Aligned_cols=283  Identities=12%  Similarity=0.119  Sum_probs=219.3

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..+|+|++|+|   ++.++++|+      .++.|++|++....      +.....+.+|...|.+++|+|++++|++++.
T Consensus        11 ~~~v~~~~~s~---~g~~l~~~~------~d~~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~   75 (377)
T 3dwl_C           11 PKPSYEHAFNS---QRTEFVTTT------ATNQVELYEQDGNG------WKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ   75 (377)
T ss_dssp             SSCCSCCEECS---SSSEEECCC------SSSCBCEEEEETTE------EEECCCBCCCSSCEEEEEECTTTCCEEEEET
T ss_pred             CCcEEEEEECC---CCCEEEEec------CCCEEEEEEccCCc------eEEEEEEecCCceEEEEEEeCCCCEEEEEeC
Confidence            57899999999   445777665      56679999997321      1444567889999999999999999999999


Q ss_pred             CCCEEEEEecCce---eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce---eecccc-Cccc
Q 019482           84 NGGCKLFEVYGGA---TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPK-AHKS  156 (340)
Q Consensus        84 d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~-~~~~  156 (340)
                      |+.|++||+.++.   ....+       ..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. |...
T Consensus        76 d~~v~vwd~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~  148 (377)
T 3dwl_C           76 DRNAYVYEKRPDGTWKQTLVL-------LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST  148 (377)
T ss_dssp             TSSEEEC------CCCCEEEC-------CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred             CCeEEEEEcCCCCceeeeeEe-------cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence            9999999998876   22111       23778999999999999999999999999999998763   555655 7789


Q ss_pred             eeEEEecCCCCeEEEeeCCCeEEEEEcc------------------CCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          157 VLDMDFSLDSEFLATTSTDGSARIWKTE------------------DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      |.+++|+|++++|++++.|+.|++||++                  .++++..+  .+...|.+++|+|+++.     ++
T Consensus       149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~-----l~  221 (377)
T 3dwl_C          149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNA-----LA  221 (377)
T ss_dssp             EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSC-----EE
T ss_pred             eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCE-----EE
Confidence            9999999999999999999999999985                  24455555  56678999999999997     78


Q ss_pred             ecCCcceEEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE--e-------------
Q 019482          219 QRGDKALLAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI--N-------------  279 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--~-------------  279 (340)
                      +++.|+.|++||+++++.    +..+..|...+.+++|+|++++|++++.++.+ +|+......  .             
T Consensus       222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T 3dwl_C          222 YAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFT  300 (377)
T ss_dssp             EEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBS
T ss_pred             EEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccc
Confidence            899999999999999887    77888999999999999999999999766655 776642110  0             


Q ss_pred             ------------------------------------ecccccccccceeeEEEecCC-e---EEEEEecCCcEEEEEe
Q 019482          280 ------------------------------------HWSKRLHLGTSIALVEFCPTQ-R---VVLTASKEWGAMITKL  317 (340)
Q Consensus       280 ------------------------------------~~~~~~~~~~~i~~~~~~~~~-~---~l~~~~~dg~i~iw~~  317 (340)
                                                          ..+...| ...|+++++.+.. .   .|+|+|.||.|+||++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSSSBCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                                                0011125 5789999976643 2   6999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-43  Score=302.03  Aligned_cols=295  Identities=12%  Similarity=0.151  Sum_probs=242.0

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC-CCeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS-GDDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~   81 (340)
                      ...+|++++|+|+   ..++++|+      .++.+++|++.....    .......+.+|...|.+++|+|+ +++|+++
T Consensus        66 ~~~~v~~~~~s~~---~~~l~~~~------~dg~v~vw~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  132 (416)
T 2pm9_A           66 VDSKFNDLDWSHN---NKIIAGAL------DNGSLELYSTNEANN----AINSMARFSNHSSSVKTVKFNAKQDNVLASG  132 (416)
T ss_dssp             CSSCEEEEEECSS---SSCEEEEE------SSSCEEEECCSSTTS----CCCEEEECCCSSSCCCEEEECSSSTTBEEEE
T ss_pred             cCCceEEEEECCC---CCeEEEEc------cCCeEEEeecccccc----cccchhhccCCccceEEEEEcCCCCCEEEEE
Confidence            4678999999994   44566555      466799999874221    12245667889999999999998 8999999


Q ss_pred             ecCCCEEEEEecCce------eeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeeccccC-
Q 019482           82 TTNGGCKLFEVYGGA------TDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDEPKA-  153 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-  153 (340)
                      +.|+.|++||+.+.+      .....    .....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..+ 
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  208 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTP----GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTS  208 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCC----CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCC
T ss_pred             cCCCeEEEEECCCCcccccccccccc----ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccc
Confidence            999999999998775      22111    112347789999999998 789999999999999999998887777665 


Q ss_pred             -----ccceeEEEecCCC-CeEEEeeCCC---eEEEEEccCC-eeEEEeecCCCCceeeEEEcc-CCCcceEEEEEecCC
Q 019482          154 -----HKSVLDMDFSLDS-EFLATTSTDG---SARIWKTEDG-VAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGD  222 (340)
Q Consensus       154 -----~~~i~~~~~~~~~-~~l~~~~~d~---~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~  222 (340)
                           ...+.+++|+|++ .++++++.|+   .|++||++++ +++..+...+...+.+++|+| ++..     +++++.
T Consensus       209 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-----l~s~~~  283 (416)
T 2pm9_A          209 PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL-----LLSSGR  283 (416)
T ss_dssp             CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC-----EEEEES
T ss_pred             cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe-----EEEEeC
Confidence                 5689999999987 6899999998   9999999986 455555424567899999999 7776     788899


Q ss_pred             cceEEEEECCCCcEEeeeeccCCCeeEEEECCCC-CEEEEeeCCCcEEEEeccCceEeecccc-----------------
Q 019482          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGSKDGDICVVDVKKMEINHWSKR-----------------  284 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----------------  284 (340)
                      |+.|++||+++++.+..+..|...+.+++|+|++ .+|++++.|+.|++||+.+.........                 
T Consensus       284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (416)
T 2pm9_A          284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS  363 (416)
T ss_dssp             SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred             CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence            9999999999999999999999999999999998 8999999999999999987654322100                 


Q ss_pred             -----------------cccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          285 -----------------LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       285 -----------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                                       .+ ..++.+++|+|||++|++++.|+.|+||++..+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          364 REESKEKPSVFHLQAPTWY-GEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ---CCSCCCSSCCCCCSTT-CCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccccccccccccCCccc-cCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                             02 457889999999999999999999999998643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-41  Score=282.59  Aligned_cols=259  Identities=12%  Similarity=0.175  Sum_probs=216.1

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      ..+..++.+|.+.|++++|+|++ ++|++++.|++|++|++...........  .....|...|.+++|+|++++|++++
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV--RSFKGHSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEE--EEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccc--eEEeCCcccEEEEEECCCCCEEEEEe
Confidence            34556789999999999999965 7999999999999999965321110000  00113788999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      .|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++ ++++..+.. +...+.+++|+|....
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~-h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG-HNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECC-CSSCEEEEEECCC---
T ss_pred             CCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEec-cCCcEEEEEEccCCCC
Confidence            99999999999999998898999999999999999999999999999999996 456666654 5568999999996431


Q ss_pred             ce-EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482          212 PF-LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       212 ~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  290 (340)
                      .. -..+++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.||.|++||+.+++.+..+..   ...
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~  239 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA---QDE  239 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---CSC
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC---CCc
Confidence            00 00178899999999999999998888999999999999999999999999999999999999988876642   358


Q ss_pred             eeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          291 IALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      |.+++|+|++.+|++++.+ .+++|+++.
T Consensus       240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~  267 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAATAT-GIKVFSLDP  267 (319)
T ss_dssp             EEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred             EEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence            9999999999999888765 599999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-43  Score=296.36  Aligned_cols=266  Identities=11%  Similarity=0.138  Sum_probs=208.6

Q ss_pred             ecCCCCeeEEEEcCCCCeEEEEec------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           60 DESEGDPMTIAVNPSGDDFVCSTT------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      .+|+..|++++|+|||++|++++.      |+.+++|+..++.....+..   ....|...|.+++|+|+++ +++++.|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---~~~~~~~~V~~~~~s~d~~-~l~~s~d  114 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---AGVQTEAGVTDVAWVSEKG-ILVASDS  114 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS---EEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec---ccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence            469999999999999999999997      66788888776654333221   1224778899999999985 5567789


Q ss_pred             CcEEEEeCCCCceeec----cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          134 GHLRIMHWPSLRIILD----EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      |+|++||+.+++....    ..+|...|.+++|+|++++|++++.|++|++||+++++++..+.. +...|.+++|+|++
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~  193 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGK  193 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTC
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCC
Confidence            9999999988765432    335777999999999999999999999999999999999988875 45689999999998


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeee--ccCCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  286 (340)
                      ...    +++++.|+.|++||+++++++..+.  .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+ ..|
T Consensus       194 ~~~----~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~-~~~  268 (357)
T 4g56_B          194 DTI----FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS-AVH  268 (357)
T ss_dssp             SSC----EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE-CCC
T ss_pred             Cce----eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE-ecc
Confidence            643    6788899999999999988765544  45567999999997 568999999999999999998877765 355


Q ss_pred             cccceeeEEEecCC-eEEEEEecCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482          287 LGTSIALVEFCPTQ-RVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       287 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                       ...|++++|+|++ ++|++++.|+.|+||+++...    ......|...|++|+
T Consensus       269 -~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~----~~~~~~H~~~V~~va  318 (357)
T 4g56_B          269 -SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE----VFRDLSHRDFVTGVA  318 (357)
T ss_dssp             -SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE----EEEECCCSSCEEEEE
T ss_pred             -ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc----EeEECCCCCCEEEEE
Confidence             5799999999987 689999999999999986543    223346888887663

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=7.7e-42  Score=286.69  Aligned_cols=262  Identities=15%  Similarity=0.153  Sum_probs=208.7

Q ss_pred             eeeEEEecCCCCeeEEEE-----cC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE
Q 019482           54 LVTYVFDESEGDPMTIAV-----NP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF  127 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~-----~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  127 (340)
                      .....+++|.+.|++++|     ++ ++++|++|+.|++|++||+...+..............|...|.+++|+|++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            345678999999999999     76 899999999999999999976432110000000112478899999999999999


Q ss_pred             EEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEE
Q 019482          128 AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRF  205 (340)
Q Consensus       128 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~  205 (340)
                      ++++.|++|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||+... ......  ..+...+.+++|
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence            99999999999999999998888889999999999999999999999999999999743 333332  245567999999


Q ss_pred             ccCCCcce-----EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc-eEe
Q 019482          206 SKDGTKPF-----LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM-EIN  279 (340)
Q Consensus       206 ~~~~~~~~-----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~  279 (340)
                      +|++....     -..+++++.|+.|++||. ..+....+..|...|.+++|+|+|++|++|+.||.|++||+... ...
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~  249 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ  249 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            99873100     001688899999999994 45666778899999999999999999999999999999999543 333


Q ss_pred             ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          280 HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       280 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ..+.  + ...|.+++|+|+++++++ +.|+.+++|++....
T Consensus       250 ~~~~--~-~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          250 REFD--A-GSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQS  287 (343)
T ss_dssp             EEEE--C-SSCEEEEEECSSSCEEEE-EESSCEEEEESSSCC
T ss_pred             eeec--C-CCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCC
Confidence            3221  2 357999999999987765 468889999987544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-42  Score=285.84  Aligned_cols=252  Identities=12%  Similarity=0.059  Sum_probs=204.7

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee--eeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT--DINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (340)
                      ......+++|.+.|.+++|+|+  +|++++.|+.|++||+..+..  ...+.     ...|...|.+++|+|++++|+++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~-----~~~h~~~v~~v~~sp~~~~las~   76 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD-----ETAHKKAIRSVAWRPHTSLLAAG   76 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC-----TTCCCSCEEEEEECTTSSEEEEE
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe-----cCCccCCEEEEEECCCCCEEEEE
Confidence            3455678999999999999987  999999999999999986532  11111     11278899999999999999999


Q ss_pred             cCCCcEEEEeCCC-------CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC----eeEEEeecCCCCc
Q 019482          131 GVDGHLRIMHWPS-------LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG----VAWTFLTRNSDEK  199 (340)
Q Consensus       131 ~~dg~i~~~d~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~~  199 (340)
                      +.|++|++||++.       .+....+.+|...|.+++|+|++++|++++.|++|++||++..    +++..+. .|...
T Consensus        77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~  155 (330)
T 2hes_X           77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQD  155 (330)
T ss_dssp             ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSC
T ss_pred             eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCc
Confidence            9999999999853       2345556778889999999999999999999999999999532    4455555 45568


Q ss_pred             eeeEEEccCCCcceEEEEEecCCcceEEEEECCCC--cEEeeeeccCCCeeEEEECCC--CCEEEEeeCCCcEEEEeccC
Q 019482          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW--NKIGHKRLLRKPASVLSISLD--GKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~i~d~~~  275 (340)
                      |.+++|+|++..     +++++.|+.|++||.+++  +++..+..|...|.+++|+|+  +.+|++++.|+.|++||+.+
T Consensus       156 v~~v~~~p~~~~-----l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          156 VKHVIWHPSEAL-----LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEEECSSSSE-----EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             eEEEEECCCCCE-----EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            999999999987     789999999999999876  567788899999999999998  77999999999999999976


Q ss_pred             c--------eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          276 M--------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       276 ~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +        .....+...| ...|.+++|++++ +|++++.||.|+||+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          231 DDEDDQQEWVCEAILPDVH-KRQVYNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             ECTTSCEEEEEEEECCSCC-SSCEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             CCccccceeEEeeeccccc-ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence            5        3333333235 6799999999765 799999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=5.6e-42  Score=292.71  Aligned_cols=266  Identities=17%  Similarity=0.198  Sum_probs=219.6

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCC-----------CCCCCCCeEEEEEecCCCeEEE
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-----------PLQDAGPQKCLSFSVDGSRFAA  129 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~l~~  129 (340)
                      +|.+.|.+++|+|+|++||+++ ++.+++|++.+++....+......           ...+...|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999977 578999999888765544321100           0012335999999999999999


Q ss_pred             ccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-C
Q 019482          130 GGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-D  208 (340)
Q Consensus       130 ~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~  208 (340)
                      |+.|+.|++||+++++....+.+|...|.+++|+|++++|++++.|++|++||++++++...+.  +...+.+++|+| +
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCC
Confidence            9999999999999999888888898999999999999999999999999999999999887775  335699999999 7


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEeee-------eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE---
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI---  278 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---  278 (340)
                      +..     +++++.|+.|++||+++++.+..+       ..|...|.+++|+|++++|++++.|+.|++||+++...   
T Consensus       219 ~~~-----l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~  293 (393)
T 1erj_A          219 GKY-----IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD  293 (393)
T ss_dssp             CCE-----EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred             CCE-----EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence            776     788999999999999998877665       46788999999999999999999999999999976432   


Q ss_pred             ---------eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          279 ---------NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       279 ---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                               ...+ .+| ...|.+++|+|++++|++++.|+.|++|++....   .+.....|.+.|.++
T Consensus       294 ~~~~~~~~~~~~~-~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~---~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          294 SKTPNSGTCEVTY-IGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN---PLLMLQGHRNSVISV  358 (393)
T ss_dssp             -------CEEEEE-ECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEE
T ss_pred             ccCCCCCcceEEE-ecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe---EEEEECCCCCCEEEE
Confidence                     1222 345 5689999999999999999999999999986544   345566787777654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=6e-42  Score=286.47  Aligned_cols=288  Identities=13%  Similarity=0.133  Sum_probs=235.0

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..+|.+++|+|   ++.+++.+....      .+..|...        .........+|...|.+++|+|++++|++++ 
T Consensus         9 ~~~v~~~~~s~---dg~~~~~~~~~~------~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-   70 (337)
T 1gxr_A            9 SKPAYSFHVTA---DGQMQPVPFPPD------ALIGPGIP--------RHARQINTLNHGEVVCAVTISNPTRHVYTGG-   70 (337)
T ss_dssp             EEECCEEEECS---SSCEEECCCCTT------SSSSTTCC--------SEEEEEEEECCSSCCCEEEECSSSSEEEEEC-
T ss_pred             CCceeEEEECC---CCCEEEeecCCC------cEeccccC--------CccccceeccCCCceEEEEEecCCcEEEEcC-
Confidence            56899999999   556676555322      23222111        2223334457999999999999999999999 


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc--eeeccccCccceeEEE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMD  161 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~  161 (340)
                      |+.|++||+.+..........  ....|...|.+++|+|++++|++++.|+.|++||+++++  ....+..+...+.+++
T Consensus        71 dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~  148 (337)
T 1gxr_A           71 KGCVKVWDISHPGNKSPVSQL--DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA  148 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEE--ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred             CCeEEEEECCCCCceeeeecc--cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence            999999999876533222211  111377899999999999999999999999999999877  4555667777899999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      |+|+++++++++.|+.|++||+++++.+..+.. +...+.+++|+|+++.     +++++.|+.|++||+++++.+..+.
T Consensus       149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~~~~  222 (337)
T 1gxr_A          149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTK-----LWTGGLDNTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCE-----EEEEecCCcEEEEECCCCceEeeec
Confidence            999999999999999999999999998888865 4568999999999987     7888899999999999998876654


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                       +...+.+++|+|+++++++++.|+.|++||+++++....  ..| ..+|.+++|+|++++|++++.||.+++|++....
T Consensus       223 -~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          223 -FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             -CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             -CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE--cCC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence             667899999999999999999999999999998876543  345 5789999999999999999999999999987544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.1e-42  Score=290.57  Aligned_cols=291  Identities=9%  Similarity=0.093  Sum_probs=230.0

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC---CCeEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS---GDDFV   79 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~   79 (340)
                      +..+|++++|+|+..  .++++|+.   ...++.|++|+++...       .......+|...|.+++|+|+   +++|+
T Consensus        17 h~~~v~~~~~~p~~~--~l~~~~s~---~~~d~~v~iw~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~   84 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSA--KFVTMGNF---ARGTGVIQLYEIQHGD-------LKLLREIEKAKPIKCGTFGATSLQQRYLA   84 (357)
T ss_dssp             CSSCEEEEEECTTSS--EEEEEEC-----CCCEEEEEEEECSSS-------EEEEEEEEESSCEEEEECTTCCTTTCCEE
T ss_pred             CCCceEEEEEcCCCc--eEEEecCc---cCCCcEEEEEeCCCCc-------ccceeeecccCcEEEEEEcCCCCCCceEE
Confidence            467899999999643  56665542   1136789999997321       111223378999999999998   69999


Q ss_pred             EEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEE------ecCCCeEEEccCCCcEEEEeCCCCc-eeeccc
Q 019482           80 CSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSF------SVDGSRFAAGGVDGHLRIMHWPSLR-IILDEP  151 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~  151 (340)
                      +++.|+.|++||+.+.+ ....+.       .|...|.++.|      +|++++|++++.||.|++||+++++ ....+.
T Consensus        85 ~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  157 (357)
T 3i2n_A           85 TGDFGGNLHIWNLEAPEMPVYSVK-------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME  157 (357)
T ss_dssp             EEETTSCEEEECTTSCSSCSEEEC-------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred             EecCCCeEEEEeCCCCCccEEEEE-------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence            99999999999998876 333332       37789999954      6889999999999999999999876 455554


Q ss_pred             cCcc----ceeEEE----ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc---CCCcceEEEEEec
Q 019482          152 KAHK----SVLDMD----FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK---DGTKPFLFCTVQR  220 (340)
Q Consensus       152 ~~~~----~i~~~~----~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~  220 (340)
                      .+..    .+.+++    |+|+++++++++.|+.|++||+++++.....  .+...+.+++|+|   ++..     ++++
T Consensus       158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~-----l~~~  230 (357)
T 3i2n_A          158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNK-----LVAT  230 (357)
T ss_dssp             CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCE-----EEEE
T ss_pred             ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCE-----EEEE
Confidence            4333    788888    7889999999999999999999998875554  3456899999999   7886     7888


Q ss_pred             CCcceEEEEECCCCcEEeeee-----ccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCce-----------------
Q 019482          221 GDKALLAVYDISTWNKIGHKR-----LLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKME-----------------  277 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~-----------------  277 (340)
                      +.|+.|++||+++++.+..+.     .|...|.+++|+|+++ +|++++.||.|++||++.+.                 
T Consensus       231 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~  310 (357)
T 3i2n_A          231 SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGS  310 (357)
T ss_dssp             ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCE
T ss_pred             CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccc
Confidence            999999999998876554444     8889999999999998 89999999999999998643                 


Q ss_pred             --EeecccccccccceeeEEEecCCeEEE-EEecCCcEEEEEecCCC
Q 019482          278 --INHWSKRLHLGTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPA  321 (340)
Q Consensus       278 --~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~  321 (340)
                        .+..+ ..| ..+|++++|+|++++|+ +++.||.|++|++....
T Consensus       311 ~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          311 VSLLQNV-TLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEEEE-ECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             cceeecc-ccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence              23222 345 57999999999999888 89999999999997543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.7e-41  Score=287.41  Aligned_cols=281  Identities=13%  Similarity=0.156  Sum_probs=230.8

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec-CCCCeeEEEEcCCCCeEEEEecCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-SEGDPMTIAVNPSGDDFVCSTTNG   85 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d~   85 (340)
                      +.+++|++.    .+++       ++.++.|.+|+.+        .......+.. |...|.+++|+|++++|++++.||
T Consensus        96 ~~~~~~s~~----~l~~-------~~~d~~v~lw~~~--------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg  156 (401)
T 4aez_A           96 LNLLDWSNL----NVVA-------VALERNVYVWNAD--------SGSVSALAETDESTYVASVKWSHDGSFLSVGLGNG  156 (401)
T ss_dssp             CBCEEECTT----SEEE-------EEETTEEEEEETT--------TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEeecCC----CEEE-------EECCCeEEEeeCC--------CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCC
Confidence            445677651    3555       3467779999987        2333333443 889999999999999999999999


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC-CCceeeccccCccceeEEEecC
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIILDEPKAHKSVLDMDFSL  164 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~  164 (340)
                      .|++||+.+++....+.       .|...|.+++|  ++++|++++.||.|++||++ .......+..|...|.+++|+|
T Consensus       157 ~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  227 (401)
T 4aez_A          157 LVDIYDVESQTKLRTMA-------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS  227 (401)
T ss_dssp             CEEEEETTTCCEEEEEC-------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             eEEEEECcCCeEEEEec-------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence            99999999887665553       37789999999  45799999999999999998 4556667778888999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec--CCcceEEEEECCCCcEEeeeec
Q 019482          165 DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      ++++|++++.|+.|++||+++++.+..+.. +...+.+++|+|++..+    ++++  +.|+.|++||+++++.+..+. 
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l----l~~~~gs~d~~i~i~d~~~~~~~~~~~-  301 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNL----LATGGGTMDKQIHFWNAATGARVNTVD-  301 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEECC-CSSCCCEEEECTTSTTE----EEEECCTTTCEEEEEETTTCCEEEEEE-
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEecC-CcceEEEEEECCCCCCE----EEEecCCCCCEEEEEECCCCCEEEEEe-
Confidence            999999999999999999999988888764 45689999999998763    3443  379999999999999887775 


Q ss_pred             cCCCeeEEEECCCCCEEEE--eeCCCcEEEEeccCceEeeccc-ccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          243 LRKPASVLSISLDGKYLAM--GSKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +...+.+++|+|+++++++  |+.||.|++||+.+++...... ..| ...|.+++|+|++++|++++.||.|++|++..
T Consensus       302 ~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            5668999999999999999  5589999999999876555432 345 67999999999999999999999999999976


Q ss_pred             CCC
Q 019482          320 PAD  322 (340)
Q Consensus       320 ~~~  322 (340)
                      ...
T Consensus       381 ~~~  383 (401)
T 4aez_A          381 GDH  383 (401)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.5e-41  Score=284.09  Aligned_cols=249  Identities=14%  Similarity=0.101  Sum_probs=202.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..+|++++|+|+   ..+++ |      +.++.|++|+++....    .......+.+|.+.|++++|+|+|++|++|+.
T Consensus        82 ~~~v~~~~~s~d---~~l~~-~------s~dg~v~lWd~~~~~~----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~  147 (344)
T 4gqb_B           82 EAGVADLTWVGE---RGILV-A------SDSGAVELWELDENET----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK  147 (344)
T ss_dssp             SSCEEEEEEETT---TEEEE-E------ETTSEEEEEEECTTSS----CEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCCEEEEEEeCC---CeEEE-E------ECCCEEEEEeccCCCc----eeEeeccccCCCCCEEEEEECCCCCEEEEEeC
Confidence            356999999994   34554 4      4677799999974322    12334556799999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCCCCceeecccc--CccceeEE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIILDEPK--AHKSVLDM  160 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~i~~~  160 (340)
                      |+.|++||+.+++....+..       |...|.+++|+|++. +|++++.|++|++||+++++....+..  +...+.++
T Consensus       148 d~~i~iwd~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  220 (344)
T 4gqb_B          148 DICIKVWDLAQQVVLSSYRA-------HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSL  220 (344)
T ss_dssp             TSCEEEEETTTTEEEEEECC-------CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEE
T ss_pred             CCeEEEEECCCCcEEEEEcC-------cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceee
Confidence            99999999999887766543       789999999999875 789999999999999999887766543  33468999


Q ss_pred             EecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          161 DFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       161 ~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      +|+| ++++|++|+.|++|++||+++++++..+.. |...|++++|+|++..+    +++++.|+.|++||+++++.. .
T Consensus       221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~----lasgs~D~~i~vwd~~~~~~~-~  294 (344)
T 4gqb_B          221 AWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPF----LASLSEDCSLAVLDSSLSELF-R  294 (344)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCC----EEEEETTSCEEEECTTCCEEE-E
T ss_pred             eecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeE----EEEEeCCCeEEEEECCCCcEE-E
Confidence            9999 566889999999999999999999998875 45689999999998542    688999999999999988764 5


Q ss_pred             eeccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCceEe
Q 019482          240 KRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKMEIN  279 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~  279 (340)
                      +..|...|++++|+|+++ +|++++.|++|++|++.+....
T Consensus       295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP  335 (344)
T ss_dssp             ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred             EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence            788999999999999986 5678999999999999875543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-41  Score=292.07  Aligned_cols=288  Identities=16%  Similarity=0.209  Sum_probs=242.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..+|++++|+|   +..++++|+      .++.|.+|+.         .......+.+|...|.+++|+|++++|++++.
T Consensus       108 ~~~v~~~~~s~---~~~~l~~~~------~dg~i~i~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (425)
T 1r5m_A          108 TNQVTCLAWSH---DGNSIVTGV------ENGELRLWNK---------TGALLNVLNFHRAPIVSVKWNKDGTHIISMDV  169 (425)
T ss_dssp             CBCEEEEEECT---TSSEEEEEE------TTSCEEEEET---------TSCEEEEECCCCSCEEEEEECTTSSEEEEEET
T ss_pred             CCceEEEEEcC---CCCEEEEEe------CCCeEEEEeC---------CCCeeeeccCCCccEEEEEECCCCCEEEEEec
Confidence            45899999999   445677665      4566999982         23345668889999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCC--------CCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMP--------PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  155 (340)
                      |+.|++||+.+++....+......        .......+.++.|+|++ .+++++.+|.|++||+++++....+..|..
T Consensus       170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~  248 (425)
T 1r5m_A          170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG  248 (425)
T ss_dssp             TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred             CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence            999999999988766555332110        00011128899999986 588888999999999999988888888888


Q ss_pred             ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      .|.+++|+|++++|++++.|+.|++||+++++.+..+.. +...+.+++|+|++ .     +++++.|+.|++||+++++
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~-----l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-K-----VISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-E-----EEEEETTSEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC-E-----EEEEeCCCcEEEEECCCCc
Confidence            999999999999999999999999999999888888764 45689999999999 4     7888999999999999999


Q ss_pred             EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce--------------------Eeeccccccccc-ceeeE
Q 019482          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME--------------------INHWSKRLHLGT-SIALV  294 (340)
Q Consensus       236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~~~~~~~~~~~-~i~~~  294 (340)
                      .+..+..+...+.+++|+|++++|++++.||.|++||+++++                    .+..+. .|... .|.++
T Consensus       322 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~  400 (425)
T 1r5m_A          322 LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDL  400 (425)
T ss_dssp             EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEE
T ss_pred             EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEE
Confidence            999999999999999999999999999999999999999887                    555553 44223 89999


Q ss_pred             EEecCCeEEEEEecCCcEEEEEec
Q 019482          295 EFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       295 ~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +|+|++++|++++.||.|++|+++
T Consensus       401 ~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          401 SWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EECTTSSEEEEEESSSCCEEEECC
T ss_pred             EccCCCceEEEEecCceEEEEeec
Confidence            999999999999999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-40  Score=275.24  Aligned_cols=281  Identities=12%  Similarity=0.116  Sum_probs=237.7

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|+|++| ++   ..++++|+      .++.|++|+++        .......+..|...|.+++|+|++++|++++
T Consensus        17 h~~~v~~~~~-~~---~~~l~s~~------~dg~v~vw~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   78 (313)
T 3odt_A           17 HDQDVRDVVA-VD---DSKVASVS------RDGTVRLWSKD--------DQWLGTVVYTGQGFLNSVCYDSEKELLLFGG   78 (313)
T ss_dssp             CSSCEEEEEE-EE---TTEEEEEE------TTSEEEEEEES--------SSEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEe-cC---CCEEEEEE------cCCcEEEEECC--------CCEEEEEeecCCccEEEEEECCCCCEEEEec
Confidence            4678999999 73   34566555      56779999996        4555677888999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+.+++|++...........    ...|...|.++.|  +++++++++.||.|++||  .++....+..|...+.++.|
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~  150 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYT----LIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKV  150 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CE----ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEE
T ss_pred             CCCeEEEEEeeecCCCCcccc----hhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEE
Confidence            999999999976532211111    1137789999999  577999999999999999  56667777788889999999


Q ss_pred             cC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          163 SL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       163 ~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      .| +++++++++.|+.|++||  .++....+...+...+.+++|+|++.      +++++.|+.|++||+++++.+..+.
T Consensus       151 ~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          151 VSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH------FISCSNDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE------EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe------EEEccCCCeEEEEECCchhhhhhhh
Confidence            98 899999999999999999  45666677665778899999999998      5788899999999999999999999


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .|...+.+++|+|++ .|++++.||.|++||+++++....+. .| ..+|.+++|+|+++ +++++.||.|++|+++...
T Consensus       223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-LP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-CS-SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred             cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-cc-CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence            999999999999999 68899999999999999998887764 45 56899999999998 6679999999999997654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-41  Score=293.78  Aligned_cols=289  Identities=13%  Similarity=0.116  Sum_probs=236.4

Q ss_pred             CceeEEeeeeecCCCcc-EEEEcCCCCcccCCCceEEEEe----CCCCCCcccCCeeeEEEe----------cCCCCeeE
Q 019482            4 GGTVTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSF----DPKTTSVYTSPLVTYVFD----------ESEGDPMT   68 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~-~~~~g~~~~~~~~~~~i~i~~~----~~~~~~~~~~~~~~~~~~----------~h~~~v~~   68 (340)
                      ..+|+|++|+|+   +. ++++|+      .++.+.+|++    .......  .......+.          +|.+.|.+
T Consensus        45 ~~~v~~~~~s~~---~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (425)
T 1r5m_A           45 LDNIVSSTWNPL---DESILAYGE------KNSVARLARIVETDQEGKKYW--KLTIIAELRHPFALSASSGKTTNQVTC  113 (425)
T ss_dssp             CSCCSEEEECSS---CTTEEEEEE------TBTEEEEEEEEEC------CE--EEEEEEEEECCCCCC------CBCEEE
T ss_pred             cCceEEEEECCC---CCcEEEEec------CCceEEEEEEecccCCccccc--cccccccccccccccccccCCCCceEE
Confidence            368999999994   44 777666      5667999999    5322100  000112222          26889999


Q ss_pred             EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  148 (340)
                      ++|+|++++|++++.|+.|++|| .+++....+.       .|...|.+++|+|++++|++++.|+.|++||+.+++...
T Consensus       114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          114 LAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-------FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-------CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-------CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            99999999999999999999999 4444444332       377899999999999999999999999999999988887


Q ss_pred             ccccCccc---------------eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          149 DEPKAHKS---------------VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       149 ~~~~~~~~---------------i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      .+..+...               +.++.|+|++ .+++++.|+.|++||+++++.+..+.. +...+.+++|+|+++.  
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~--  261 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKL--  261 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTE--
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCE--
Confidence            77666555               9999999985 588888999999999999988877764 4568999999999986  


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                         +++++.|+.|++||+++++.+..+..+...+.+++|+|++ ++++++.|+.|++||+++++.+..+. .| ..+|.+
T Consensus       262 ---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~~i~~  335 (425)
T 1r5m_A          262 ---LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI-VD-GVPIFA  335 (425)
T ss_dssp             ---EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE-CT-TCCEEE
T ss_pred             ---EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc-cC-CccEEE
Confidence               7888899999999999999888888899999999999999 99999999999999999998877664 45 568999


Q ss_pred             EEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          294 VEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       294 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ++|+|++++|++++.||.|++|++....
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            9999999999999999999999997543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=289.35  Aligned_cols=298  Identities=13%  Similarity=0.137  Sum_probs=228.3

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCC---cccCCeeeEEEecCC------------CCee
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTS---VYTSPLVTYVFDESE------------GDPM   67 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~---~~~~~~~~~~~~~h~------------~~v~   67 (340)
                      ...+|+|++|+|   ++.++|+|+      .++.|++|++......   ...+......+.+|.            ..|+
T Consensus        27 ~~~~V~~v~~s~---~g~~la~g~------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~   97 (447)
T 3dw8_B           27 EADIISTVEFNH---SGELLATGD------KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN   97 (447)
T ss_dssp             GGGSEEEEEECS---SSSEEEEEE------TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC
T ss_pred             ccCcEEEEEECC---CCCEEEEEc------CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE
Confidence            468999999999   456777766      5667999999744311   111233466788998            8899


Q ss_pred             EEEEcCCC--CeEEEEecCCCEEEEEecCceeeeeecc---------------------------------ccCCCCCCC
Q 019482           68 TIAVNPSG--DDFVCSTTNGGCKLFEVYGGATDINLLA---------------------------------KKMPPLQDA  112 (340)
Q Consensus        68 ~~~~~~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~---------------------------------~~~~~~~~~  112 (340)
                      +++|+|++  .+|++++.|+.|++||+...........                                 .......|.
T Consensus        98 ~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  177 (447)
T 3dw8_B           98 KIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHT  177 (447)
T ss_dssp             EEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCS
T ss_pred             EEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCC
Confidence            99999998  7999999999999999987543211000                                 000012488


Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eee-------ccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEc
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IIL-------DEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKT  183 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~-------~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~  183 (340)
                      ..|.+++|+|++++|++| .|+.|++||+++.. ...       .+..|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus       178 ~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          178 YHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             SCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            899999999999999998 79999999998443 332       355677899999999998 99999999999999999


Q ss_pred             cCCee----EEEeecCCC-----------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcEEeeeeccCCC-
Q 019482          184 EDGVA----WTFLTRNSD-----------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKP-  246 (340)
Q Consensus       184 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~-  246 (340)
                      ++++.    +..+..+..           ..|.+++|+|++++     +++++. +.|++||+++ ++++..+..|... 
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~  330 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-----MMTRDY-LSVKVWDLNMENRPVETYQVHEYLR  330 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-----EEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCE-----EEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence            98876    566654432           27999999999997     666777 9999999997 7777777777532 


Q ss_pred             --------------eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc----------------------------
Q 019482          247 --------------ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR----------------------------  284 (340)
Q Consensus       247 --------------i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------------  284 (340)
                                    +..++|+|++++|++|+.||.|++||+.+++.+.....                            
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV  410 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence                          23489999999999999999999999998876531100                            


Q ss_pred             --cccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          285 --LHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       285 --~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                        ......|..++|+|++++||+++.++ +++|.-
T Consensus       411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          411 DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence              01134688999999999999998875 777764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=6.1e-41  Score=281.40  Aligned_cols=266  Identities=12%  Similarity=0.075  Sum_probs=217.5

Q ss_pred             eEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCC
Q 019482           56 TYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVD  133 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d  133 (340)
                      ...+.+|.+.|++++|+|++++|++++.||.|++||+.+..........   ...|...|.+++|+|  ++++|++++.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDS---WRAHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEE---EECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecce---eccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            3457899999999999999999999999999999999876432222110   013778999999999  69999999999


Q ss_pred             CcEEEEeCCCC---------ceeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCeeEEEee---------
Q 019482          134 GHLRIMHWPSL---------RIILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVAWTFLT---------  193 (340)
Q Consensus       134 g~i~~~d~~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~~~~~~---------  193 (340)
                      |.|++||++++         +....+..|...|.+++|+|+  +++|++++.|+.|++||+++++.+..+.         
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999876         445666778889999999999  9999999999999999998876544332         


Q ss_pred             ---cCCCCceeeEEEccC---CCcceEEEEEecCCcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCC----CEEEE
Q 019482          194 ---RNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDG----KYLAM  261 (340)
Q Consensus       194 ---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~----~~l~~  261 (340)
                         ..+...+.+++|+|+   +..     +++++.++.+.+|+...++.  +..+..|...|.+++|+|++    ++|++
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEK-----LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCE-----EEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             cccCCcccceeEEEeccCCCCCcE-----EEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence               134567999999997   665     78888899998888887765  56677888999999999998    89999


Q ss_pred             eeCCCcEEEEeccCc----------------------------------------------eEeecccccccccceeeEE
Q 019482          262 GSKDGDICVVDVKKM----------------------------------------------EINHWSKRLHLGTSIALVE  295 (340)
Q Consensus       262 ~~~dg~i~i~d~~~~----------------------------------------------~~~~~~~~~~~~~~i~~~~  295 (340)
                      ++.||.|++||++.+                                              +.+..+ ..| ...|++++
T Consensus       236 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~  313 (351)
T 3f3f_A          236 GCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDH-NGEVWSVS  313 (351)
T ss_dssp             EETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEE-CTT-SSCEEEEE
T ss_pred             EcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecc-cccEEEEE
Confidence            999999999999874                                              233322 345 57899999


Q ss_pred             EecCCeEEEEEecCCcEEEEEecCCCCCCCCccccc
Q 019482          296 FCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLL  331 (340)
Q Consensus       296 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  331 (340)
                      |+|++++|++++.||.|++|++.....++.+.....
T Consensus       314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  349 (351)
T 3f3f_A          314 WNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA  349 (351)
T ss_dssp             ECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC-
T ss_pred             EcCCCCEEEEecCCCcEEEEecCcCcchhheeehcc
Confidence            999999999999999999999988776555444433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.8e-41  Score=292.67  Aligned_cols=294  Identities=13%  Similarity=0.126  Sum_probs=230.8

Q ss_pred             CceeEEeeeee-cCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            4 GGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         4 ~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ..+|+|++|+| +.   .++++|+      .|+.|++|++.......  .......+ +|...|.+++|+|++++|++++
T Consensus        63 ~~~V~~~~~s~~~~---~~l~s~s------~dg~v~vwd~~~~~~~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s  130 (437)
T 3gre_A           63 PNSITSSAVSPGET---PYLITGS------DQGVIKIWNLKEIIVGE--VYSSSLTY-DCSSTVTQITMIPNFDAFAVSS  130 (437)
T ss_dssp             TSCEEEEEEECSSS---CEEEEEE------TTSEEEEEEHHHHHTTC--CCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEECCCCC---CEEEEec------CCceEEEeECcccccCc--ccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence            48999999999 53   4667665      56679999986411111  01112222 4999999999999999999999


Q ss_pred             cCCCEEEEEec---CceeeeeeccccC-----CCCCCCCCeEEEE--EecCCCeEEEccCCCcEEEEeCCCCceeecccc
Q 019482           83 TNGGCKLFEVY---GGATDINLLAKKM-----PPLQDAGPQKCLS--FSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (340)
Q Consensus        83 ~d~~i~iw~~~---~~~~~~~~~~~~~-----~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  152 (340)
                      .|+.|++||+.   .++..........     .+..+...+.++.  +++++++|++++.|+.|++||+++++.+..+..
T Consensus       131 ~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  210 (437)
T 3gre_A          131 KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN  210 (437)
T ss_dssp             TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc
Confidence            99999999995   3322221111100     0001456778887  567899999999999999999999998888877


Q ss_pred             --CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc----CCCcceEEEEEecCCcceE
Q 019482          153 --AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK----DGTKPFLFCTVQRGDKALL  226 (340)
Q Consensus       153 --~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~d~~i  226 (340)
                        |...|.+++|+|++++|++|+.|+.|++||+++++++..+...+...|.+++|+|    ++..     +++++.|+.|
T Consensus       211 ~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~-----l~s~~~dg~i  285 (437)
T 3gre_A          211 SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVI-----VVGGSSKTFL  285 (437)
T ss_dssp             CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEE-----EEEESTTEEE
T ss_pred             CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccE-----EEEEcCCCcE
Confidence              6789999999999999999999999999999999998888645556899996665    4544     7899999999


Q ss_pred             EEEECCCCcEEeeeecc--------------------------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482          227 AVYDISTWNKIGHKRLL--------------------------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (340)
Q Consensus       227 ~i~d~~~~~~~~~~~~~--------------------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  280 (340)
                      ++||+++++.+..+..+                          ...|.+++|+ ++++|++++.|+.|++||+.+++...
T Consensus       286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  364 (437)
T 3gre_A          286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK  364 (437)
T ss_dssp             EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred             EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence            99999999877766643                          3457888888 77899999999999999999877655


Q ss_pred             cccc------------------------------------cccccceeeEEEecC--CeEEEEEecCCcEEEEE
Q 019482          281 WSKR------------------------------------LHLGTSIALVEFCPT--QRVVLTASKEWGAMITK  316 (340)
Q Consensus       281 ~~~~------------------------------------~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iw~  316 (340)
                      .+..                                    .| ...|++++|+++  +.+|++|+.||.|+||+
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEECC--CCCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            4432                                    14 678999999998  88999999999999995

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.6e-41  Score=288.10  Aligned_cols=284  Identities=12%  Similarity=0.137  Sum_probs=230.3

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (340)
                      .+.+..|++   +..++++|+      .++.|++|++.        .......+.+|...|++++|+|++++|++++.|+
T Consensus        99 ~~~~~~~~~---~~~~l~~~~------~dg~i~iwd~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~  161 (420)
T 3vl1_A           99 YTAVDTAKL---QMRRFILGT------TEGDIKVLDSN--------FNLQREIDQAHVSEITKLKFFPSGEALISSSQDM  161 (420)
T ss_dssp             EEEEEEECS---SSCEEEEEE------TTSCEEEECTT--------SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceEEEEEec---CCCEEEEEE------CCCCEEEEeCC--------CcceeeecccccCccEEEEECCCCCEEEEEeCCC
Confidence            344446666   345677665      56669999876        4445556679999999999999999999999999


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC------------
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA------------  153 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~------------  153 (340)
                      .|++||+.+++....+.       .|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+            
T Consensus       162 ~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  234 (420)
T 3vl1_A          162 QLKIWSVKDGSNPRTLI-------GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL  234 (420)
T ss_dssp             EEEEEETTTCCCCEEEE-------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEE
T ss_pred             eEEEEeCCCCcCceEEc-------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEE
Confidence            99999999887665553       27789999999999999999999999999999998877766542            


Q ss_pred             ------------ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC-cceEEEEEec
Q 019482          154 ------------HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT-KPFLFCTVQR  220 (340)
Q Consensus       154 ------------~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~  220 (340)
                                  ...+.+++|+|++++|++++.||.|++||+++++.+..+...+...+.+++|+|++. .     ++++
T Consensus       235 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~~g  309 (420)
T 3vl1_A          235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANY-----IYAG  309 (420)
T ss_dssp             EECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTE-----EEEE
T ss_pred             ecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCE-----EEEE
Confidence                        234556677899999999999999999999999988888777778899999999998 5     7889


Q ss_pred             CCcceEEEEECCCCcE-Eeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee--------cccccccccc
Q 019482          221 GDKALLAVYDISTWNK-IGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--------WSKRLHLGTS  290 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~~~  290 (340)
                      +.|+.|++||+++++. +..+.. +...+.++.+ |++++|++++.|+.|++||+...+...        .....+ ...
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~  387 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDA  387 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCC
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-Ccc
Confidence            9999999999998754 556665 5677888755 678899999999999999987732211        011233 468


Q ss_pred             eeeEEEecCCe---EEEEEecCCcEEEEEecCC
Q 019482          291 IALVEFCPTQR---VVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       291 i~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~  320 (340)
                      |.+++|+|+++   .+++++.+|.+.+|++..|
T Consensus       388 v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~  420 (420)
T 3vl1_A          388 VSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP  420 (420)
T ss_dssp             CCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred             eEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence            99999999999   7888888999999998653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.2e-40  Score=281.58  Aligned_cols=284  Identities=11%  Similarity=0.141  Sum_probs=232.1

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (340)
                      -+.+++|++.    ++||.|       .++.|++|+....      .......+.+|...|++++|+|+|++|++|+.|+
T Consensus       107 y~~~l~wS~~----n~lAvg-------ld~tV~lWd~~tg------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg  169 (420)
T 4gga_A          107 YLNLVDWSSG----NVLAVA-------LDNSVYLWSASSG------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA  169 (420)
T ss_dssp             TCBCEEECTT----SEEEEE-------ETTEEEEEETTTC------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEEECCC----CEEEEE-------eCCEEEEEECCCC------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC
Confidence            3567899863    467733       4677999998621      1122344567888999999999999999999999


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEecC
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSL  164 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~  164 (340)
                      .|++||+.+++....+..       |...+.++.+  ++.+|++|+.|+.+++||..... .+..+..|...+..+.|+|
T Consensus       170 ~v~iWd~~~~~~~~~~~~-------h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~  240 (420)
T 4gga_A          170 EVQLWDVQQQKRLRNMTS-------HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  240 (420)
T ss_dssp             CEEEEETTTTEEEEEECC-------CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             eEEEEEcCCCcEEEEEeC-------CCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence            999999999887665543       7778888776  46799999999999999988654 4455677888999999999


Q ss_pred             CCCeEEEeeCCCeEEEEEccCCee----EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          165 DSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       165 ~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      +++++++++.|+.+++|+..+++.    +... ..+...|.+++|+|++..++  ....++.|+.|++||+++++....+
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~l--a~~~gs~D~~I~iwd~~t~~~~~~~  317 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVL--ATGGGTSDRHIRIWNVCSGACLSAV  317 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEE--EEEECTTTCEEEEEETTTTEEEEEE
T ss_pred             CCCeeeeeeccccceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEE--EEEeecCCCEEEEEeCCccccceee
Confidence            999999999999999999987653    2333 34557899999999988642  2456778999999999999988777


Q ss_pred             eccCCCeeEEEECCCCCEEEEee--CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          241 RLLRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ..+ ..+.++.|+|+++.+++++  .|+.|+|||+.+++++..+ .+| ...|++++|+|||++|++|+.|++|+||++.
T Consensus       318 ~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          318 DAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             ECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             ccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            655 4788999999999988765  7899999999999998877 467 6799999999999999999999999999996


Q ss_pred             CCC
Q 019482          319 VPA  321 (340)
Q Consensus       319 ~~~  321 (340)
                      ...
T Consensus       395 ~~~  397 (420)
T 4gga_A          395 ELD  397 (420)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.2e-39  Score=276.42  Aligned_cols=246  Identities=11%  Similarity=0.052  Sum_probs=214.1

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      +..|.++|.+++|+|++++|++++.|+.|++||+.+++  ....+.       .|...|.+++|+|++++|++++.||.|
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~~~~~dg~i   76 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-------EHNGQVTGVDWAPDSNRIVTCGTDRNA   76 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-------CCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence            45589999999999999999999999999999999876  444333       377899999999999999999999999


Q ss_pred             EEEeCCCCceee--ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCceeeEEEccCCCc
Q 019482          137 RIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       137 ~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      ++||+++++...  ....+...|.+++|+|++++|++++.|+.|++||++.++.   ...+...+...+.+++|+|++..
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  156 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence            999998876433  3356777999999999999999999999999999998763   34444556678999999999987


Q ss_pred             ceEEEEEecCCcceEEEEEC------------------CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482          212 PFLFCTVQRGDKALLAVYDI------------------STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                           +++++.|+.|++||+                  ..++.+..+..|...+.+++|+|++++|++++.|+.|++||+
T Consensus       157 -----l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          157 -----LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             -----EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             -----EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence                 788899999999995                  367778888888999999999999999999999999999999


Q ss_pred             cCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          274 KKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       274 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ++++.+..+. .| ..+|.+++|+|++++|+++ .|+.+++|++..
T Consensus       232 ~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          232 DKKMAVATLA-SE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             GGTTEEEEEE-CS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCceeEEEc-cC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            9998887664 45 5689999999999988887 899999999987

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-40  Score=280.52  Aligned_cols=251  Identities=14%  Similarity=0.119  Sum_probs=211.5

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--eeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccC
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGV  132 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~  132 (340)
                      ..+.+|.+.|++++|+|++++|++++.||.|++||+....  ....+.       .|...|.+++|+++  +++|++++.
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-------CCCCcEEEEEeCCCCCCCEEEEecc
Confidence            4678999999999999999999999999999999998433  322222       37789999999987  899999999


Q ss_pred             CCcEEEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEc
Q 019482          133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~  206 (340)
                      ||.|++||+.+++  ....+..|...|.+++|+|+  +++|++++.|+.|++||++++..  ...+. .+...+.+++|+
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~  156 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWA  156 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEEC
T ss_pred             CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEc
Confidence            9999999999886  66667778889999999998  99999999999999999988743  23333 456789999999


Q ss_pred             c-------------CCCcceEEEEEecCCcceEEEEECCCCc----EEeeeeccCCCeeEEEECCC---CCEEEEeeCCC
Q 019482          207 K-------------DGTKPFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLD---GKYLAMGSKDG  266 (340)
Q Consensus       207 ~-------------~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg  266 (340)
                      |             ++..     +++++.|+.|++||++++.    ....+..|...|.+++|+|+   +++|++++.||
T Consensus       157 ~~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             CCC----------CTTCE-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             CccccccccccCCCCCCE-----EEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            9             5776     7888999999999998765    44566778899999999999   89999999999


Q ss_pred             cEEEEeccCce----EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          267 DICVVDVKKME----INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       267 ~i~i~d~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .|++||+.+++    ........| ...|.+++|+|++++|++++.||.|++|++....
T Consensus       232 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          232 TCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             CEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             EEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            99999998863    221111224 5789999999999999999999999999998554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.5e-39  Score=272.32  Aligned_cols=278  Identities=19%  Similarity=0.186  Sum_probs=225.9

Q ss_pred             CeeeEEEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           53 PLVTYVFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      ..+..+|+||.+.|++++|+|+ +++|++|+.|++|+|||+...+.........  ...|...|.+++|+|++++|++++
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~--l~~h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRA--LRGHSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEE--ECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEE--EeCCCCCEEEEEECCCCCEEEEEc
Confidence            3456679999999999999997 6899999999999999998754322111110  113788999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      .|+.|++|+............+...+..+.+++++++|++++.|+.+++||+............+...+..++|++++..
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            99999999999888877777777788999999999999999999999999998776655555566778999999998765


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i  291 (340)
                      .+   +++++.|+.|++||+++++.+..+..|..+|++++|+|++++|++|+.|+.|++||+++.+.+..+..   ...+
T Consensus       186 ~~---~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v  259 (340)
T 4aow_A          186 PI---IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDII  259 (340)
T ss_dssp             CE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCE
T ss_pred             cE---EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceE
Confidence            43   57788999999999999999999999999999999999999999999999999999999988876642   3589


Q ss_pred             eeEEEecCCeEEEEEecCCcEEEEEecCCCCC------CCCccccccccccccC
Q 019482          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPADW------KGLSLPLLHSHSQNSV  339 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~v  339 (340)
                      ..+.|+|++. +++++.|+.|++|+++.....      ........|...|++|
T Consensus       260 ~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  312 (340)
T 4aow_A          260 NALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSL  312 (340)
T ss_dssp             EEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEE
T ss_pred             EeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEE
Confidence            9999999876 556667999999998643211      1122334566666654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.3e-39  Score=271.50  Aligned_cols=283  Identities=11%  Similarity=0.021  Sum_probs=231.4

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~   81 (340)
                      +..+|++++|+|+   ..++++|+      .++.|++|+++....     ......+.+|...|.+++|+|+++ +|+++
T Consensus        10 h~~~v~~~~~s~~---~~~l~~~~------~d~~v~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~   75 (342)
T 1yfq_A           10 PKDYISDIKIIPS---KSLLLITS------WDGSLTVYKFDIQAK-----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CSSCEEEEEEEGG---GTEEEEEE------TTSEEEEEEEETTTT-----EEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred             CCCcEEEEEEcCC---CCEEEEEc------CCCeEEEEEeCCCCc-----cccceeeeecCCceEEEEECCCCCcEEEEE
Confidence            5678999999994   45666655      566799999974431     112344568999999999999999 99999


Q ss_pred             ecCCCEEEEEe-cCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC---------Cceeeccc
Q 019482           82 TTNGGCKLFEV-YGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS---------LRIILDEP  151 (340)
Q Consensus        82 ~~d~~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~---------~~~~~~~~  151 (340)
                      +.||.|++||+ .+++. ..+..     ..|...|.+++|+| +++|++++.|+.|++||+++         ++.+..+.
T Consensus        76 ~~dg~i~~wd~~~~~~~-~~~~~-----~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  148 (342)
T 1yfq_A           76 TVQGEILKVDLIGSPSF-QALTN-----NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK  148 (342)
T ss_dssp             ETTSCEEEECSSSSSSE-EECBS-----CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred             cCCCeEEEEEeccCCce-Eeccc-----cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence            99999999999 77654 22211     02778999999999 99999999999999999987         66665554


Q ss_pred             cCccceeEEEecCCCCeEEEeeCCCeEEEEEccC-Cee-EEEeecCCCCceeeEEEcc-CCCcceEEEEEecCCcceEEE
Q 019482          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVA-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAV  228 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i  228 (340)
                       +...+.+++|+|++  +++++.|+.|++||+++ +.. .......+...+.+++|+| ++..     +++++.|+.|++
T Consensus       149 -~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-----l~~~~~dg~i~i  220 (342)
T 1yfq_A          149 -VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG-----YACSSIDGRVAV  220 (342)
T ss_dssp             -SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE-----EEEEETTSEEEE
T ss_pred             -eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCE-----EEEEecCCcEEE
Confidence             77799999999887  99999999999999987 543 2333445567899999999 9886     788889999999


Q ss_pred             EECCCC------cEEeeeeccCC---------CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee
Q 019482          229 YDISTW------NKIGHKRLLRK---------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       229 ~d~~~~------~~~~~~~~~~~---------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                      ||++..      +....+..+..         .|.+++|+|++++|++++.||.|++||+.+++.+..+. .|+..+|.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~h~~~v~~  299 (342)
T 1yfq_A          221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVK  299 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CCSSSEEEE
T ss_pred             EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-cccCCCceE
Confidence            999887      66677777755         89999999999999999999999999999999887764 332578999


Q ss_pred             EEEecCCeEEEEEecCCc-EEEEEe
Q 019482          294 VEFCPTQRVVLTASKEWG-AMITKL  317 (340)
Q Consensus       294 ~~~~~~~~~l~~~~~dg~-i~iw~~  317 (340)
                      ++  |++++|++++.||. .+.+..
T Consensus       300 ~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          300 IA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             ec--CCCCeEEEEecCCcccccccc
Confidence            99  99999999999998 666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.7e-40  Score=304.32  Aligned_cols=286  Identities=12%  Similarity=0.137  Sum_probs=247.8

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|+|++|+|   ++.++++|+      .++.|.+|++.        .......+.+|...|.+++|+|++++|++++
T Consensus        12 h~~~v~~i~~sp---~~~~la~~~------~~g~v~iwd~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~   74 (814)
T 3mkq_A           12 RSDRVKGIDFHP---TEPWVLTTL------YSGRVEIWNYE--------TQVEVRSIQVTETPVRAGKFIARKNWIIVGS   74 (814)
T ss_dssp             ECSCEEEEEECS---SSSEEEEEE------TTSEEEEEETT--------TTEEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred             CCCceEEEEECC---CCCEEEEEe------CCCEEEEEECC--------CCceEEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence            357899999999   445677665      45669999987        4556677889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-ceeeccccCccceeEEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDMD  161 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~i~~~~  161 (340)
                      .||.|++||+.+++....+..       |...|.+++|+|++++|++++.||.|++||++++ .....+..|...|.+++
T Consensus        75 ~dg~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~  147 (814)
T 3mkq_A           75 DDFRIRVFNYNTGEKVVDFEA-------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA  147 (814)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEec-------CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence            999999999998877665532       7789999999999999999999999999999886 55566667778999999


Q ss_pred             ecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc--CCCcceEEEEEecCCcceEEEEECCCCcEEe
Q 019482          162 FSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (340)
Q Consensus       162 ~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  238 (340)
                      |+| +++.|++++.|+.|++||+++++....+..++...+.+++|+|  ++..     +++++.|+.|++||+++++.+.
T Consensus       148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----l~~~~~dg~i~~~d~~~~~~~~  222 (814)
T 3mkq_A          148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY-----MITASDDLTIKIWDYQTKSCVA  222 (814)
T ss_dssp             EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE-----EEEECTTSEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE-----EEEEeCCCEEEEEECCCCcEEE
Confidence            999 8899999999999999999988888888777667899999999  7876     7889999999999999999999


Q ss_pred             eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE-EEEEecCCcEEEEEe
Q 019482          239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTASKEWGAMITKL  317 (340)
Q Consensus       239 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iw~~  317 (340)
                      .+..|...+.+++|+|+++++++++.||.|++||+.+++....+. .+ ...+.+++|+|+++. +++++.|+.+.+|++
T Consensus       223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-VG-LERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEEC-CS-SSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence            999999999999999999999999999999999999988877664 34 468999999999863 244455677888887


Q ss_pred             cC
Q 019482          318 TV  319 (340)
Q Consensus       318 ~~  319 (340)
                      ..
T Consensus       301 ~~  302 (814)
T 3mkq_A          301 GN  302 (814)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.1e-39  Score=314.20  Aligned_cols=304  Identities=17%  Similarity=0.176  Sum_probs=254.4

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +...|+|++|+|   ++.++++|+      .++.|++|++.        +......+.+|...|.+++|+|+|++|++++
T Consensus       614 h~~~v~~~~~s~---~~~~l~s~~------~d~~i~vw~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~  676 (1249)
T 3sfz_A          614 HTDAVYHACFSQ---DGQRIASCG------ADKTLQVFKAE--------TGEKLLDIKAHEDEVLCCAFSSDDSYIATCS  676 (1249)
T ss_dssp             CSSCEEEEEECT---TSSEEEEEE------TTSCEEEEETT--------TCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccEEEEEECC---CCCEEEEEe------CCCeEEEEECC--------CCCEEEEeccCCCCEEEEEEecCCCEEEEEe
Confidence            467899999999   456777666      56669999987        4455677889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      .|+.|++||+.+++....+..       |...|.+++|+|  ++.++++++.|+.|++||+.+++....+.+|...|.++
T Consensus       677 ~d~~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~  749 (1249)
T 3sfz_A          677 ADKKVKIWDSATGKLVHTYDE-------HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC  749 (1249)
T ss_dssp             TTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred             CCCeEEEEECCCCceEEEEcC-------CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence            999999999998877665543       778999999999  55689999999999999999999998888999999999


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-----------------------------------------------
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-----------------------------------------------  193 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----------------------------------------------  193 (340)
                      +|+|+++++++++.||.|++||+++++....+.                                               
T Consensus       750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~  829 (1249)
T 3sfz_A          750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS  829 (1249)
T ss_dssp             EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred             EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence            999999999999999999999998776544332                                               


Q ss_pred             -------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC
Q 019482          194 -------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG  266 (340)
Q Consensus       194 -------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  266 (340)
                             ..+...+.+++|+|++..     +++++.++.|++||+.++..+..+..|...|.+++|+|+|+++++++.||
T Consensus       830 ~~~~~~~~~~~~~v~~~~~sp~~~~-----l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg  904 (1249)
T 3sfz_A          830 GLLAEIHTGHHSTIQYCDFSPYDHL-----AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQ  904 (1249)
T ss_dssp             CEEEEEECSSSSCCCEEEECSSTTE-----EEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CceeEEcCCCCCceEEEEEcCCCCE-----EEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence                   134457888899999887     78889999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeccCceEeec------------------------------------ccccccccceeeEEEecCCeEEEEEecCC
Q 019482          267 DICVVDVKKMEINHW------------------------------------SKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~------------------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      .|++||+.+......                                    ....+ ...+.+++|+|+++++++|+.||
T Consensus       905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~sp~g~~l~~g~~~g  983 (1249)
T 3sfz_A          905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLP-EAQVSCCCLSPHLEYVAFGDEDG  983 (1249)
T ss_dssp             CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEEC-CSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcc-cCcEEEEEEcCCCCEEEEEcCCC
Confidence            999999764211000                                    00011 34789999999999999999999


Q ss_pred             cEEEEEecCCCCCCCCccccccccccccC
Q 019482          311 GAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       311 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      .|++|++....   .......|...|.++
T Consensus       984 ~i~i~d~~~~~---~~~~~~~h~~~v~~l 1009 (1249)
T 3sfz_A          984 AIKIIELPNNR---VFSSGVGHKKAVRHI 1009 (1249)
T ss_dssp             CCEEEETTTTS---CEEECCCCSSCCCCE
T ss_pred             CEEEEEcCCCc---eeeecccCCCceEEE
Confidence            99999997544   344555777777654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=6e-39  Score=280.15  Aligned_cols=290  Identities=15%  Similarity=0.198  Sum_probs=239.3

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      ++|+++.+     .++++|+      .++.|++|+..        +......+.+|.+.|.+++|+|++ +|++++.||.
T Consensus       125 ~~~~~~~~-----~~l~sgs------~dg~i~vwd~~--------~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~  184 (464)
T 3v7d_B          125 ITCLQFED-----NYVITGA------DDKMIRVYDSI--------NKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRT  184 (464)
T ss_dssp             EEEEEEET-----TEEEEEE------TTSCEEEEETT--------TTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSC
T ss_pred             EEEEEECC-----CEEEEEc------CCCcEEEEECC--------CCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCC
Confidence            46666643     3566665      56679999987        555667888999999999999988 9999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCcee-----------------
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRII-----------------  147 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~-----------------  147 (340)
                      |++||+.+++....+.       .|...|.+++|++  +++++++++.|+.|++||++++...                 
T Consensus       185 i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  257 (464)
T 3v7d_B          185 VRVWDIKKGCCTHVFE-------GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE  257 (464)
T ss_dssp             EEEEETTTTEEEEEEC-------CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG
T ss_pred             EEEEECCCCcEEEEEC-------CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC
Confidence            9999999888665553       2778999999994  7789999999999999999876532                 


Q ss_pred             ------eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482          148 ------LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       148 ------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                            ....+|...+.++  +++++++++++.|+.|++||+++++++..+.. +...+.+++|+|+++.     +++++
T Consensus       258 ~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-----l~sg~  329 (464)
T 3v7d_B          258 ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKR-----CISAS  329 (464)
T ss_dssp             GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTE-----EEEEE
T ss_pred             CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCE-----EEEEe
Confidence                  2344555566665  67799999999999999999999999888875 4568999999999997     78999


Q ss_pred             CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      .|+.|++||+++++.+..+..|...+.++.|+  +++|++++.||.|++||+.+++......  + ...+..++|+|+++
T Consensus       330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~-~~~~~~~~~~~~~~  404 (464)
T 3v7d_B          330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--H-TNLSAITTFYVSDN  404 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--C-TTCCCEEEEEECSS
T ss_pred             CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--C-CCCccEEEEEeCCC
Confidence            99999999999999999999999999999997  5799999999999999999877655432  2 56788899999999


Q ss_pred             EEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          302 VVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      +|++++ ||.|++|++.....  .......|...|.+|
T Consensus       405 ~l~~~~-dg~i~iwd~~~g~~--~~~~~~~~~~~v~~v  439 (464)
T 3v7d_B          405 ILVSGS-ENQFNIYNLRSGKL--VHANILKDADQIWSV  439 (464)
T ss_dssp             EEEEEE-TTEEEEEETTTCCE--EESCTTTTCSEEEEE
T ss_pred             EEEEec-CCeEEEEECCCCcE--EehhhccCCCcEEEE
Confidence            999998 89999999976542  122345566666654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-39  Score=272.38  Aligned_cols=268  Identities=15%  Similarity=0.181  Sum_probs=229.5

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .......+.+|.+.|++++|+|++++|++++.|+.|++||+.+++....+.       .|...|.+++|+|++++|++++
T Consensus        21 ~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~   93 (369)
T 3zwl_B           21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-------GHTGTIWSIDVDCFTKYCVTGS   93 (369)
T ss_dssp             CSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECTTSSEEEEEE
T ss_pred             cccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-------hcCCcEEEEEEcCCCCEEEEEe
Confidence            455667899999999999999999999999999999999999887666553       2778999999999999999999


Q ss_pred             CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCee-----------EEEeecC
Q 019482          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVA-----------WTFLTRN  195 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~-----------~~~~~~~  195 (340)
                      .||.|++||+.+++....+. +...+.+++|+|+++++++++.+     +.|++||++.+..           ...+. .
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~  171 (369)
T 3zwl_B           94 ADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-T  171 (369)
T ss_dssp             TTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-C
T ss_pred             CCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-C
Confidence            99999999999998887765 77799999999999999999998     9999999986542           22222 1


Q ss_pred             CCC--ceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482          196 SDE--KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       196 ~~~--~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                      +..  .+.+++|+|+++.     +++++.|+.|++||+++ .+.+..+..+...+.+++|+|++++|++++.|+.|++||
T Consensus       172 ~~~~~~~~~~~~~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d  246 (369)
T 3zwl_B          172 HEGLDAATVAGWSTKGKY-----IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD  246 (369)
T ss_dssp             CTTCCCEEEEEECGGGCE-----EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CcCccceeEEEEcCCCCE-----EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence            222  7999999999987     78889999999999998 778888888999999999999999999999999999999


Q ss_pred             ccCceEeecccccccccceeeEEEecCCeEEEEEecCC--------------cEEEEEecCCCCCCCCcccccccccccc
Q 019482          273 VKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW--------------GAMITKLTVPADWKGLSLPLLHSHSQNS  338 (340)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~h~~~v~~  338 (340)
                      +++++....+.  + ...+..++|+|+++++++++.++              .+++|++....   .......|...|.+
T Consensus       247 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~v~~  320 (369)
T 3zwl_B          247 VSTLQVLKKYE--T-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE---EIGRVQGHFGPLNT  320 (369)
T ss_dssp             TTTCCEEEEEE--C-SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC---EEEEEECCSSCEEE
T ss_pred             CCCCceeeeec--C-CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc---chhheecccCcEEE
Confidence            99998887764  3 56899999999999999999998              78999876544   34445567666655


Q ss_pred             C
Q 019482          339 V  339 (340)
Q Consensus       339 v  339 (340)
                      +
T Consensus       321 ~  321 (369)
T 3zwl_B          321 V  321 (369)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-38  Score=261.64  Aligned_cols=282  Identities=11%  Similarity=0.124  Sum_probs=227.6

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      +.+++|+++    ++||.|       .|++|++|+.+..      .......+.+|...|++++|+|++++|++|+.|+.
T Consensus        28 ~~~l~WS~~----~~lAvg-------~D~tV~iWd~~tg------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~   90 (318)
T 4ggc_A           28 LNLVDWSSG----NVLAVA-------LDNSVYLWSASSG------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE   90 (318)
T ss_dssp             CBCEEECTT----SEEEEE-------ETTEEEEEETTTC------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceEEEECCC----CEEEEE-------eCCEEEEEECCCC------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            467999973    367733       5778999998621      12223445678889999999999999999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEEecCC
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMDFSLD  165 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~  165 (340)
                      |++||+.+++....+..       |...+.++  ++++..+++++.++.+++|+..... .+..+..|...+..+.++++
T Consensus        91 v~iw~~~~~~~~~~~~~-------h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (318)
T 4ggc_A           91 VQLWDVQQQKRLRNMTS-------HSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD  161 (318)
T ss_dssp             EEEEETTTTEEEEEEEC-------CSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred             EEEeecCCceeEEEecC-------ccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence            99999999887666543       55666654  5567799999999999999988764 44556677789999999999


Q ss_pred             CCeEEEeeCCCeEEEEEccCCeeEE---EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          166 SEFLATTSTDGSARIWKTEDGVAWT---FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       166 ~~~l~~~~~d~~v~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      ++++++++.|+.|++||+++++...   .....+...+.++.++|++...+  .+.+++.++.|++||.+....... ..
T Consensus       162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~i~lwd~~~~~~~~~-~~  238 (318)
T 4ggc_A          162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL--ATGGGTSDRHIRIWNVCSGACLSA-VD  238 (318)
T ss_dssp             SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE--EEEECTTTCEEEEEETTTCCEEEE-EE
T ss_pred             CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE--EEEecCCCCEEEEEeccccccccc-cc
Confidence            9999999999999999998765321   22234456799999999988643  256788999999999998877544 44


Q ss_pred             cCCCeeEEEECCCCCEEEEee--CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          243 LRKPASVLSISLDGKYLAMGS--KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +...+..+.|+|+++.+++++  .|+.|++||+++++++..+ .+| ...|++++|+||+++|++||.||+|+||++..
T Consensus       239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGH-TSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            566899999999999887754  7999999999999998877 467 67999999999999999999999999999854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-39  Score=278.85  Aligned_cols=276  Identities=11%  Similarity=0.116  Sum_probs=217.7

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      .++.|.+|+++..+...    .....+.+|.+.|++++|+| ++++|++++.||.|++||+.++...............|
T Consensus        55 ~~g~i~v~~~~~~~~~~----~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h  130 (402)
T 2aq5_A           55 GGGAFLVLPLGKTGRVD----KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH  130 (402)
T ss_dssp             SSCCEEEEETTCCEECC----TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC
T ss_pred             CCCEEEEEECccCCCCC----CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC
Confidence            56679999986433211    12234678999999999999 89999999999999999998874321110000011137


Q ss_pred             CCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeecc--ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee
Q 019482          112 AGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       112 ~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~  188 (340)
                      ...|.+++|+|++ ++|++++.|+.|++||+++++.+..+  ..|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus       131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            8899999999998 69999999999999999999988877  67888999999999999999999999999999999999


Q ss_pred             EEEe-ecCCCCceeeEEEccCCCcceEEEEEec---CCcceEEEEECCCCcE-Eeeee-ccCCCeeEEEECCCCCEEEE-
Q 019482          189 WTFL-TRNSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDISTWNK-IGHKR-LLRKPASVLSISLDGKYLAM-  261 (340)
Q Consensus       189 ~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~d~~i~i~d~~~~~~-~~~~~-~~~~~i~~~~~s~~~~~l~~-  261 (340)
                      +..+ ..+....+.++.|+|++..     ++++   +.|+.|++||+++++. +.... .+...+.+++|+|++++|++ 
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~-----l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          211 VAEKDRPHEGTRPVHAVFVSEGKI-----LTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             EEEEECSSCSSSCCEEEECSTTEE-----EEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred             eeeeccCCCCCcceEEEEcCCCcE-----EEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEE
Confidence            8888 4444444899999999885     5666   7899999999998764 22222 45678999999999999975 


Q ss_pred             eeCCCcEEEEeccCceE-eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          262 GSKDGDICVVDVKKMEI-NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       262 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ++.||.|++||+.+++. +..+....+..++.+++|+|++.++++  .++.+++|++..
T Consensus       286 g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          286 GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence            55799999999998773 322221112578999999999998765  566899999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=6.8e-39  Score=289.21  Aligned_cols=303  Identities=14%  Similarity=0.064  Sum_probs=248.4

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCC-eeEEEEcC--CCCeEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNP--SGDDFV   79 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~--~~~~l~   79 (340)
                      ..+.|++++|+|   ++.++++++       ++.+.+|+++....    .......+.+|... |.+++|+|  ++++|+
T Consensus        17 ~~~~v~~~~~sp---dg~~l~~~~-------~~~v~v~~~~~~~~----~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~   82 (615)
T 1pgu_A           17 QRNFTTHLSYDP---TTNAIAYPC-------GKSAFVRCLDDGDS----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC   82 (615)
T ss_dssp             CTTCCCCCEEET---TTTEEEEEE-------TTEEEEEECCSSCC----SSCSEEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred             ccCceeEEEECC---CCCEEEEec-------CCeEEEEECCCCCC----ccccceEEecCCCceEEEEEECcCCCCCEEE
Confidence            457899999999   445677554       45699999872211    11455678999999 99999999  999999


Q ss_pred             EEecCCCEEEEEecCc--------eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCcee
Q 019482           80 CSTTNGGCKLFEVYGG--------ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRII  147 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~  147 (340)
                      +++.||.|++||+.++        .....+.       .|...|.+++|+|++++|++++.+    +.|++||  .++..
T Consensus        83 s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~  153 (615)
T 1pgu_A           83 SGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-------VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL  153 (615)
T ss_dssp             EEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-------CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE
T ss_pred             EecCCCEEEEEeCCCCcccccccccccchhh-------cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc
Confidence            9999999999999754        2222221       267899999999999999999987    6888888  56677


Q ss_pred             eccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCC---ceeeEEEccC-CCcceEEEEEecCC
Q 019482          148 LDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDE---KIELCRFSKD-GTKPFLFCTVQRGD  222 (340)
Q Consensus       148 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~~~~~~~  222 (340)
                      ..+..|...|.+++|+|+++ .+++++.|+.|++||+++++.+..+.. +..   .+.+++|+|+ ++.     +++++.
T Consensus       154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-----l~~~~~  227 (615)
T 1pgu_A          154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEF-----VITVGS  227 (615)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCE-----EEEEET
T ss_pred             eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCE-----EEEEeC
Confidence            77888888999999999998 799999999999999999999888875 445   7999999999 886     788899


Q ss_pred             cceEEEEECCCCcEEeee-e---ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc--ccccceeeEEE
Q 019482          223 KALLAVYDISTWNKIGHK-R---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALVEF  296 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~-~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~  296 (340)
                      |+.|++||+++++.+..+ .   .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+...  .....+.++.|
T Consensus       228 dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (615)
T 1pgu_A          228 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA  306 (615)
T ss_dssp             TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred             CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence            999999999999998888 5   788999999999 9999999999999999999998887765432  11357888888


Q ss_pred             ecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      . +++++++++.||.+++|++....   .......|...|.++
T Consensus       307 ~-~~~~l~~~~~~g~i~~~d~~~~~---~~~~~~~~~~~v~~~  345 (615)
T 1pgu_A          307 T-GNGRIISLSLDGTLNFYELGHDE---VLKTISGHNKGITAL  345 (615)
T ss_dssp             E-ETTEEEEEETTSCEEEEETTEEE---EEEEECCCSSCEEEE
T ss_pred             C-CCCeEEEEECCCCEEEEECCCCc---EEEEEeCCCCCEEEE
Confidence            5 88999999999999999986532   344455676666554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.1e-38  Score=275.63  Aligned_cols=300  Identities=13%  Similarity=0.130  Sum_probs=234.0

Q ss_pred             CceeEEeeeeecCCC-------ccEEEEcCCCCcccCCCceEEEEeCCC--------------CCCc----ccCC-eeeE
Q 019482            4 GGTVTCGSWIKRPEN-------VNLVVLGKSSRASSSPSVLEIFSFDPK--------------TTSV----YTSP-LVTY   57 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~-------~~~~~~g~~~~~~~~~~~i~i~~~~~~--------------~~~~----~~~~-~~~~   57 (340)
                      ..|..|+.|.|+...       ...+++|.....  ..+.|.+++++..              ....    ...+ ....
T Consensus        45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~--~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  122 (430)
T 2xyi_A           45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSD--EQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIE  122 (430)
T ss_dssp             SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSS--SCEEEEEEEEEEC--------------------------CEEEE
T ss_pred             CCCceEEEECcccccccCCCcceEEEEEEEcCCC--CCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEE
Confidence            457889999996421       245677776442  6788888876510              0000    1112 2235


Q ss_pred             EEecCCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCc----------eeeeeeccccCCCCCCCCCeEEEEEecCCC-
Q 019482           58 VFDESEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGG----------ATDINLLAKKMPPLQDAGPQKCLSFSVDGS-  125 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  125 (340)
                      ....|.+.|++++|+|+ +.+|++++.+|.|++|++...          .....+.       .|...|.+++|+|++. 
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~  195 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-------GHQKEGYGLSWNPNLNG  195 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-------CCSSCCCCEEECTTSTT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-------CCCCCeEEEEeCCCCCC
Confidence            56789999999999997 679999999999999999762          2222221       3778999999999988 


Q ss_pred             eEEEccCCCcEEEEeCCCCce-------eeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCC---eeEEEeec
Q 019482          126 RFAAGGVDGHLRIMHWPSLRI-------ILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDG---VAWTFLTR  194 (340)
Q Consensus       126 ~l~~~~~dg~i~~~d~~~~~~-------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~---~~~~~~~~  194 (340)
                      +|++++.||.|++|++.++..       ...+..|...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+. 
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-  274 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-  274 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-
Confidence            999999999999999987432       234556777899999999 7788999999999999999987   4555665 


Q ss_pred             CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcEEeeeeccCCCeeEEEECCCCC-EEEEeeCCCcEEEEe
Q 019482          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVD  272 (340)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d  272 (340)
                      .+...+.+++|+|++..+    +++++.|+.|++||+++ ..++..+..|...|.+++|+|+++ +|++++.|+.|++||
T Consensus       275 ~~~~~v~~i~~~p~~~~~----l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          275 AHTAEVNCLSFNPYSEFI----LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             CCSSCEEEEEECSSCTTE----EEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             cCCCCeEEEEeCCCCCCE----EEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            455789999999999853    67889999999999998 456778888999999999999985 699999999999999


Q ss_pred             ccCc--------------eEeecccccccccceeeEEEecCCe-EEEEEecCCcEEEEEecC
Q 019482          273 VKKM--------------EINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTV  319 (340)
Q Consensus       273 ~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~  319 (340)
                      +...              +.+... ..| ...|++++|+|+++ +|++++.||.|+||++..
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIH-GGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEEC-CCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCccccCccccccCCcceEEEc-CCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            9872              222222 345 56899999999998 999999999999999963

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.2e-38  Score=284.04  Aligned_cols=310  Identities=16%  Similarity=0.139  Sum_probs=237.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCC-eEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGD-DFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~   81 (340)
                      ...+|.+++|+|+   ..++++++..    .+....++.++        .......+.+|...|.+++|+|+++ .++++
T Consensus       115 ~~~~v~~~~~s~~---~~~l~~~~~~----~~~~~~v~~~d--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  179 (615)
T 1pgu_A          115 LAGPISDISWDFE---GRRLCVVGEG----RDNFGVFISWD--------SGNSLGEVSGHSQRINACHLKQSRPMRSMTV  179 (615)
T ss_dssp             CSSCEEEEEECTT---SSEEEEEECC----SSCSEEEEETT--------TCCEEEECCSCSSCEEEEEECSSSSCEEEEE
T ss_pred             ccccEEEEEEeCC---CCEEEEeccC----CCCccEEEEEE--------CCCcceeeecCCccEEEEEECCCCCcEEEEE
Confidence            4678999999994   4456655521    22234444444        1224456789999999999999998 79999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCC---CeEEEEEecC-CCeEEEccCCCcEEEEeCCCCceeecc-c---cC
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAG---PQKCLSFSVD-GSRFAAGGVDGHLRIMHWPSLRIILDE-P---KA  153 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~-~---~~  153 (340)
                      +.|+.|++||+.+.+....+..       |..   .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .   .|
T Consensus       180 ~~d~~v~vwd~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~  252 (615)
T 1pgu_A          180 GDDGSVVFYQGPPFKFSASDRT-------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV  252 (615)
T ss_dssp             ETTTEEEEEETTTBEEEEEECS-------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred             eCCCcEEEEeCCCcceeeeecc-------cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc
Confidence            9999999999988876665532       556   8999999999 999999999999999999999988877 5   77


Q ss_pred             ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC--------------------------------------
Q 019482          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--------------------------------------  195 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--------------------------------------  195 (340)
                      ...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+                                      
T Consensus       253 ~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~  331 (615)
T 1pgu_A          253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEV  331 (615)
T ss_dssp             CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEE
T ss_pred             CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcE
Confidence            7899999999 9999999999999999999877665544322                                      


Q ss_pred             ------CCCc---------------------------------eeeEEEccCCCcceE----------------------
Q 019482          196 ------SDEK---------------------------------IELCRFSKDGTKPFL----------------------  214 (340)
Q Consensus       196 ------~~~~---------------------------------v~~~~~~~~~~~~~~----------------------  214 (340)
                            +...                                 |.+++|. ++..++.                      
T Consensus       332 ~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  410 (615)
T 1pgu_A          332 LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGITKHEFGSQPK  410 (615)
T ss_dssp             EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECC-STTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred             EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEEC-CCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence                  1112                                 2333331 1222100                      


Q ss_pred             ----------------------------------------------EEEEecCC-cceEEEEECCCCcEE-eeeeccCCC
Q 019482          215 ----------------------------------------------FCTVQRGD-KALLAVYDISTWNKI-GHKRLLRKP  246 (340)
Q Consensus       215 ----------------------------------------------~~~~~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~  246 (340)
                                                                    -.+++++. |+.|++||+.+++.. ..+..|...
T Consensus       411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  490 (615)
T 1pgu_A          411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK  490 (615)
T ss_dssp             EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC
T ss_pred             EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCc
Confidence                                                          00233344 677777777765544 455667889


Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec----------CCeEEEEEecCCcEEEEE
Q 019482          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP----------TQRVVLTASKEWGAMITK  316 (340)
Q Consensus       247 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iw~  316 (340)
                      |.+++|+|++++|++++.||.|++||+.+++.+..+...| ...|++++|+|          ++++|++++.||.|++|+
T Consensus       491 v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~  569 (615)
T 1pgu_A          491 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS  569 (615)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred             eEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC-CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEE
Confidence            9999999999999999999999999999999988765436 67999999999          999999999999999999


Q ss_pred             ecCCCCCCCCccccccccccccC
Q 019482          317 LTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       317 ~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      +....  +.......|...|.+|
T Consensus       570 ~~~~~--~~~~~~~~h~~~v~~l  590 (615)
T 1pgu_A          570 VKRPM--KIIKALNAHKDGVNNL  590 (615)
T ss_dssp             SSCTT--CCEEETTSSTTCEEEE
T ss_pred             CCCCc--eechhhhcCccceEEE
Confidence            97653  3455677888888765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.5e-39  Score=278.18  Aligned_cols=251  Identities=12%  Similarity=0.082  Sum_probs=215.8

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce------eeeeeccccCCCCCCCCCeEEEEEecC----C
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA------TDINLLAKKMPPLQDAGPQKCLSFSVD----G  124 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~----~  124 (340)
                      ....+.+|.+.|++++|+|  ++|++++.||.|++|++.+.+      ....+.       .|...|.+++|+|+    +
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~g   78 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-------VHKSGLHHVDVLQAIERDA   78 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-------CCTTCEEEEEEEEEEETTT
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-------cCCCcEEEEEEecccccCC
Confidence            4456789999999999998  799999999999999998876      233332       37789999999999    9


Q ss_pred             ---CeEEEccCCCcEEEEeCCCCce-----eeccccC-----ccceeEEEec----CCCCe-EEEeeCCCeEEEEEccC-
Q 019482          125 ---SRFAAGGVDGHLRIMHWPSLRI-----ILDEPKA-----HKSVLDMDFS----LDSEF-LATTSTDGSARIWKTED-  185 (340)
Q Consensus       125 ---~~l~~~~~dg~i~~~d~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~d~~v~iwd~~~-  185 (340)
                         ++|++++.||.|++||+.+++.     ...+..+     ...|.+++|+    |++++ |++++.|+.|++||+++ 
T Consensus        79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  158 (397)
T 1sq9_A           79 FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF  158 (397)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred             ccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence               9999999999999999998876     6667667     4789999999    99999 99999999999999998 


Q ss_pred             -----CeeEE-----Eee------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec---c---
Q 019482          186 -----GVAWT-----FLT------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---L---  243 (340)
Q Consensus       186 -----~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~---  243 (340)
                           ++.+.     .+.      ..+...+.+++|+|++ .     +++++.|+.|++||+++++.+..+..   |   
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~  232 (397)
T 1sq9_A          159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L-----IATGFNNGTVQISELSTLRPLYNFESQHSMINN  232 (397)
T ss_dssp             SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E-----EEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred             ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e-----EEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence                 66555     553      2356689999999999 6     78999999999999999999888888   8   


Q ss_pred             CCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeeccccc------------ccccceeeEEEecCCeEEEEEec
Q 019482          244 RKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRL------------HLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       244 ~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      ...+.+++|+|++++|++++.|   +.|++||+++++.+..+...            | ...|.+++|+|++++|++++.
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEET
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEEEEECCCCCEEEEEeC
Confidence            8999999999999999999999   99999999998887766421            5 679999999999999999999


Q ss_pred             CCcEEEEEecCCC
Q 019482          309 EWGAMITKLTVPA  321 (340)
Q Consensus       309 dg~i~iw~~~~~~  321 (340)
                      ||.|++|++....
T Consensus       312 dg~i~iwd~~~~~  324 (397)
T 1sq9_A          312 DGKLRFWDVKTKE  324 (397)
T ss_dssp             TSEEEEEETTTTE
T ss_pred             CCeEEEEEcCCCc
Confidence            9999999997544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.8e-40  Score=280.88  Aligned_cols=244  Identities=11%  Similarity=0.047  Sum_probs=198.6

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCc--eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGG--ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      ++.|.++|++++|+|++++|++++.|+.|++||+.++  +....+.       .|...|.+++|+|++++|++++.|+.|
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~s~d~~v   79 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-------DHDKIVTCVDWAPKSNRIVTCSQDRNA   79 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-------CCSSCEEEEEECTTTCCEEEEETTSSE
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-------cCCceEEEEEEeCCCCEEEEEeCCCeE
Confidence            4457789999999999999999999999999999987  3333222       378899999999999999999999999


Q ss_pred             EEEeCCCCc---eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee---EEEeecCCCCceeeEEEccCCC
Q 019482          137 RIMHWPSLR---IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA---WTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       137 ~~~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      ++||+.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+...+...|.+++|+|+++
T Consensus        80 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           80 YVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             EEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             EEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence            999999876   5666777888999999999999999999999999999998773   5666654677899999999998


Q ss_pred             cceEEEEEecCCcceEEEEECC------------------CCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482          211 KPFLFCTVQRGDKALLAVYDIS------------------TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                      .     +++++.|+.|++||++                  .++.+..+ .|...|.+++|+|++++|++++.||.|++||
T Consensus       160 ~-----l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          160 L-----LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAY  233 (377)
T ss_dssp             E-----EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred             E-----EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            7     7889999999999985                  24455555 7888999999999999999999999999999


Q ss_pred             ccCceE----eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          273 VKKMEI----NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       273 ~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +.+++.    +..+ ..| ..+|.+++|+|++++|++++.|+.+ +|+..
T Consensus       234 ~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          234 PSAPEQPPRALITV-KLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECSTTSCEEECCCE-ECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCCCCcceeeEee-cCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            998876    4444 345 5789999999999999999877665 66664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.8e-39  Score=271.08  Aligned_cols=257  Identities=16%  Similarity=0.229  Sum_probs=212.2

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEE-EEec---CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CC
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFV-CSTT---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GS  125 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~  125 (340)
                      ......+++|...|.+++|+|++..++ +++.   |+.|++||+.+++.......      .|...|.+++|+|+   ++
T Consensus         8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~   81 (357)
T 3i2n_A            8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI------EKAKPIKCGTFGATSLQQR   81 (357)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE------EESSCEEEEECTTCCTTTC
T ss_pred             HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee------cccCcEEEEEEcCCCCCCc
Confidence            445566788999999999999997555 5555   89999999998765433221      36789999999998   69


Q ss_pred             eEEEccCCCcEEEEeCCCCc-eeeccccCccceeEEE------ecCCCCeEEEeeCCCeEEEEEccCCe-eEEEeecCC-
Q 019482          126 RFAAGGVDGHLRIMHWPSLR-IILDEPKAHKSVLDMD------FSLDSEFLATTSTDGSARIWKTEDGV-AWTFLTRNS-  196 (340)
Q Consensus       126 ~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~v~iwd~~~~~-~~~~~~~~~-  196 (340)
                      +|++++.||.|++||+.+++ ....+..|...|.+++      |+|++++|++++.|+.|++||+++++ .+..+..+. 
T Consensus        82 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~  161 (357)
T 3i2n_A           82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG  161 (357)
T ss_dssp             CEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred             eEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence            99999999999999999887 7777778888999994      57899999999999999999999887 566664322 


Q ss_pred             --CCceeeEE----EccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC---CCCEEEEeeCCCc
Q 019482          197 --DEKIELCR----FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL---DGKYLAMGSKDGD  267 (340)
Q Consensus       197 --~~~v~~~~----~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~  267 (340)
                        ...+.+++    |+|++..     +++++.|+.|++||+++++.. ....+...+.+++|+|   +++++++++.||.
T Consensus       162 ~~~~~v~~~~~~~~~~~~~~~-----l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          162 ENKRDCWTVAFGNAYNQEERV-----VCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             SCCCCEEEEEEECCCC-CCCE-----EEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred             CCCCceEEEEEEeccCCCCCE-----EEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence              33788888    7889887     788899999999999998874 4466788999999999   9999999999999


Q ss_pred             EEEEeccCceEeeccc----ccccccceeeEEEecCCe-EEEEEecCCcEEEEEecCCCC
Q 019482          268 ICVVDVKKMEINHWSK----RLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       268 i~i~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      |++||+++++....+.    ..| ...|.+++|+|+++ +|++++.||.|++|++..+..
T Consensus       236 i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  294 (357)
T 3i2n_A          236 FHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ  294 (357)
T ss_dssp             EEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred             EEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence            9999999877654432    245 67999999999998 899999999999999986553

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-39  Score=298.51  Aligned_cols=201  Identities=7%  Similarity=0.055  Sum_probs=164.7

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ...+|+|++|+|   +..++|+|+      .++.|++|+..        ....... ..|...|.+++|+| |++|++++
T Consensus        16 h~~~V~~lafsp---dg~~lAsgs------~Dg~I~lw~~~--------~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s   76 (902)
T 2oaj_A           16 MSSKPIAAAFDF---TQNLLAIAT------VTGEVHIYGQQ--------QVEVVIK-LEDRSAIKEMRFVK-GIYLVVIN   76 (902)
T ss_dssp             CSSCEEEEEEET---TTTEEEEEE------TTSEEEEECST--------TCEEEEE-CSSCCCEEEEEEET-TTEEEEEE
T ss_pred             CCCCcEEEEECC---CCCEEEEEe------CCCEEEEEeCC--------CcEEEEE-cCCCCCEEEEEEcC-CCEEEEEE
Confidence            357899999999   456788777      45669999764        2222222 34788999999999 88999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-----------eccc
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----------LDEP  151 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-----------~~~~  151 (340)
                      .|+.|++||+.+++....+.        +...|.+++|+|++++|++|+.||.|++||+++++..           ....
T Consensus        77 ~D~~v~lWd~~~~~~~~~~~--------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~  148 (902)
T 2oaj_A           77 AKDTVYVLSLYSQKVLTTVF--------VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA  148 (902)
T ss_dssp             TTCEEEEEETTTCSEEEEEE--------CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS
T ss_pred             CcCeEEEEECCCCcEEEEEc--------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc
Confidence            99999999999877655442        5578999999999999999999999999999987653           2234


Q ss_pred             cCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecC-----------------CCCceeeEEEccCCCcce
Q 019482          152 KAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRN-----------------SDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       152 ~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~  213 (340)
                      .|...|.+++|+|+ +..+++|+.|+.| +||+++++++..+..+                 +...|.+++|+|+|..  
T Consensus       149 ~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~--  225 (902)
T 2oaj_A          149 ARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH--  225 (902)
T ss_dssp             SCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE--
T ss_pred             cCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE--
Confidence            56779999999995 5789999999999 9999999988877643                 2357999999999987  


Q ss_pred             EEEEEecCCcceEEEEECCCCcE
Q 019482          214 LFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                         +++++.|+.|++||++++++
T Consensus       226 ---lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          226 ---IITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             ---EEEEETTCCEEEEETTTCCE
T ss_pred             ---EEEEECCCeEEEEECCCCcE
Confidence               78999999999999876654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.8e-38  Score=290.14  Aligned_cols=257  Identities=19%  Similarity=0.207  Sum_probs=215.6

Q ss_pred             eeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      ....+++|.+.|++++|+|++ ++|++|+.|+.|++|++...........  .....|...|.+++|+|++++|++|+.|
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~--~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ--RRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE--EEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccc--ceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            345688999999999999875 6899999999999999976432110000  0011388999999999999999999999


Q ss_pred             CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEEccCCCc
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  211 (340)
                      |.|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||...........  ..|...|.+++|+|++..
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            999999999999888888999999999999999999999999999999986554333222  245567999999998743


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i  291 (340)
                      ..   +++++.|+.|++||+++++....+..|...|++++|+|++++|++++.||.|++||+.+++.+..+..   ...|
T Consensus       532 ~~---l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v  605 (694)
T 3dm0_A          532 PT---IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVI  605 (694)
T ss_dssp             CE---EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCE
T ss_pred             ce---EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcE
Confidence            22   68889999999999999999989999999999999999999999999999999999999998876532   3579


Q ss_pred             eeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          292 ALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      .+++|+|++.+|++++ |+.|+||++...
T Consensus       606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~  633 (694)
T 3dm0_A          606 HALCFSPNRYWLCAAT-EHGIKIWDLESK  633 (694)
T ss_dssp             EEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred             EEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence            9999999998877765 566999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.1e-38  Score=259.45  Aligned_cols=246  Identities=12%  Similarity=0.106  Sum_probs=196.8

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~   80 (340)
                      +..+|++++|+|   ++.++++|+      .|+.|++|+++...      ......+.+|.+.|.+++|+|  ++++|++
T Consensus         8 h~~~V~~~~~s~---~g~~las~s------~D~~v~iw~~~~~~------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s   72 (297)
T 2pm7_B            8 HNEMIHDAVMDY---YGKRMATCS------SDKTIKIFEVEGET------HKLIDTLTGHEGPVWRVDWAHPKFGTILAS   72 (297)
T ss_dssp             CSSCEEEEEECT---TSSEEEEEE------TTSCEEEEEBCSSC------BCCCEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CcCceEEEEECC---CCCEEEEEe------CCCEEEEEecCCCC------cEEEEEEccccCCeEEEEecCCCcCCEEEE
Confidence            467899999999   445677666      56679999986322      223467889999999999986  3899999


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCce--eeccccCccc
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI--ILDEPKAHKS  156 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~  156 (340)
                      ++.|++|++||+.+++.......     ..|...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..|...
T Consensus        73 ~s~D~~v~iWd~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~  147 (297)
T 2pm7_B           73 CSYDGKVMIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (297)
T ss_dssp             EETTTEEEEEEBSSSCBCCCEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred             EcCCCEEEEEEcCCCceEEEEEe-----ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc
Confidence            99999999999987642111111     137789999999997  88999999999999999987632  3445677789


Q ss_pred             eeEEEecCC-------------CCeEEEeeCCCeEEEEEccCCe----eEEEeecCCCCceeeEEEccCC---CcceEEE
Q 019482          157 VLDMDFSLD-------------SEFLATTSTDGSARIWKTEDGV----AWTFLTRNSDEKIELCRFSKDG---TKPFLFC  216 (340)
Q Consensus       157 i~~~~~~~~-------------~~~l~~~~~d~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~  216 (340)
                      |.+++|+|+             +++|++|+.|++|++||+++++    ....+. .|...|.+++|+|++   .+     
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~-----  221 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSY-----  221 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEE-----
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceE-----
Confidence            999999997             5789999999999999998765    444554 456789999999996   43     


Q ss_pred             EEecCCcceEEEEECCCCc---EEeee--eccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          217 TVQRGDKALLAVYDISTWN---KIGHK--RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~---~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      +++++.|+.|++||+++..   ....+  ..+...+.+++|+|+|++|++++.|+.|++|+..
T Consensus       222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            7889999999999998743   11122  4567789999999999999999999999999976

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1e-38  Score=297.06  Aligned_cols=251  Identities=12%  Similarity=0.139  Sum_probs=223.2

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      ....+.+|.+.|.+++|+|++++|++++.||.|++||+.++.....+..       |..+|.+++|+|++++|++++.||
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~dg   77 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV-------TETPVRAGKFIARKNWIIVGSDDF   77 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec-------CCCcEEEEEEeCCCCEEEEEeCCC
Confidence            3466889999999999999999999999999999999998877665543       778999999999999999999999


Q ss_pred             cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEcc-CCCcc
Q 019482          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSK-DGTKP  212 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~  212 (340)
                      .|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||++++ .....+. .+...+.+++|+| ++.. 
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~-  155 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPST-  155 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEE-
T ss_pred             eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCE-
Confidence            9999999999998888888899999999999999999999999999999987 4445554 4567899999999 6665 


Q ss_pred             eEEEEEecCCcceEEEEECCCCcEEeeeeccC-CCeeEEEECC--CCCEEEEeeCCCcEEEEeccCceEeeccccccccc
Q 019482          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-KPASVLSISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  289 (340)
                          +++++.|+.|++||+++++....+..+. ..+..++|+|  ++.++++++.||.|++||+.+++.+..+. .| ..
T Consensus       156 ----l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~-~~  229 (814)
T 3mkq_A          156 ----FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GH-MS  229 (814)
T ss_dssp             ----EEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CC-SS
T ss_pred             ----EEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CC-CC
Confidence                7888999999999999888776666554 7899999999  99999999999999999999998877663 45 57


Q ss_pred             ceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          290 SIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       290 ~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      .|.+++|+|++++|++++.||.|++|++...
T Consensus       230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            8999999999999999999999999998653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.5e-39  Score=311.32  Aligned_cols=310  Identities=16%  Similarity=0.158  Sum_probs=254.4

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ...+|.+++|+|+   ..++++|+      .++.+.+|+++        .......+.+|...|.+++|+|+|++|++++
T Consensus       839 ~~~~v~~~~~sp~---~~~l~~~~------~dg~v~vwd~~--------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s  901 (1249)
T 3sfz_A          839 HHSTIQYCDFSPY---DHLAVIAL------SQYCVELWNID--------SRLKVADCRGHLSWVHGVMFSPDGSSFLTAS  901 (1249)
T ss_dssp             SSSCCCEEEECSS---TTEEEEEC------SSSCEEEEETT--------TTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEEcCC---CCEEEEEe------CCCeEEEEEcC--------CCceeeecCCCccceEEEEECCCCCEEEEEe
Confidence            3578899999994   45677666      45669999987        5556677889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeee----------------------------ecc--ccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482           83 TNGGCKLFEVYGGATDIN----------------------------LLA--KKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~----------------------------~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  132 (340)
                      .|+.|++|++.+......                            ...  .......+...+.+++|+|+++++++|+.
T Consensus       902 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~  981 (1249)
T 3sfz_A          902 DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDE  981 (1249)
T ss_dssp             TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEET
T ss_pred             CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcC
Confidence            999999999764211000                            000  00000113467999999999999999999


Q ss_pred             CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (340)
                      +|.|++||+.+++....+..|...|.+++|+|+++++++++.|+.|++||+.+++.....  .+...+.++.|+|++.  
T Consensus       982 ~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~-- 1057 (1249)
T 3sfz_A          982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKDFRLLQDSR-- 1057 (1249)
T ss_dssp             TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB--CCSSCEEEEEECSSSE--
T ss_pred             CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe--cCCCcEEEEEEcCCCc--
Confidence            999999999999988888888899999999999999999999999999999998876433  4567899999999876  


Q ss_pred             eEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~  292 (340)
                          +++++.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++.|+.|++||+.+++....+ ..| ...|+
T Consensus      1058 ----l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-~~h-~~~v~ 1131 (1249)
T 3sfz_A         1058 ----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-KGH-NGCVR 1131 (1249)
T ss_dssp             ----EEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-CCC-SSCEE
T ss_pred             ----EEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-ccC-CCcEE
Confidence                688889999999999999999999999999999999999999999999999999999998887766 356 57999


Q ss_pred             eEEEecCCeEEEEEecCCcEEEEEecCCCCCCCC------ccccccccccccC
Q 019482          293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKGL------SLPLLHSHSQNSV  339 (340)
Q Consensus       293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------~~~~~h~~~v~~v  339 (340)
                      +++|+|++++|++++.||.|++|++.........      .....|...|.++
T Consensus      1132 ~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A         1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp             EEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence            9999999999999999999999999865532211      1124566666654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.9e-38  Score=271.57  Aligned_cols=248  Identities=10%  Similarity=0.028  Sum_probs=203.8

Q ss_pred             ecCCCCeeEEEEcCCCCeE-EEEecCCCEEEEEec--CceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           60 DESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      .+|.+.|.+++|+|++++| ++++.|+.|++||+.  +++....+...     .+...|.+++|+|++++|++++.+|.|
T Consensus        99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~l~~~~~~g~v  173 (450)
T 2vdu_B           99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF-----CFSKRPNAISIAEDDTTVIIADKFGDV  173 (450)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE-----ECSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc-----cCCCCceEEEEcCCCCEEEEEeCCCcE
Confidence            3566789999999999996 889999999999998  66655444321     256789999999999999999999999


Q ss_pred             EEEeCCCCceee----ccccCccceeEEEecCC---CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          137 RIMHWPSLRIIL----DEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       137 ~~~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      ++|++.+++...    .+..|...|.+++|+|+   +++|++++.|+.|++||+++++.+..+...+...|.+++|+ ++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~  252 (450)
T 2vdu_B          174 YSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KD  252 (450)
T ss_dssp             EEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-ST
T ss_pred             EEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CC
Confidence            999998876543    56677889999999999   99999999999999999999988887665667789999999 88


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeec-------------------------cCCCeeEEEECCCCCEEEEee-
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-------------------------LRKPASVLSISLDGKYLAMGS-  263 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------~~~~i~~~~~s~~~~~l~~~~-  263 (340)
                      ..     +++++.|+.|++||+++++.+..+..                         ....+..+.|+|++++|++++ 
T Consensus       253 ~~-----l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~  327 (450)
T 2vdu_B          253 YL-----LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE  327 (450)
T ss_dssp             TE-----EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET
T ss_pred             CE-----EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC
Confidence            87     78889999999999999998777653                         235688999999999999998 


Q ss_pred             CCCcEEEEec--cCc---eEeecccccccccceeeEEEecCCeEEEEEec------CCcEEEEEecCCC
Q 019482          264 KDGDICVVDV--KKM---EINHWSKRLHLGTSIALVEFCPTQRVVLTASK------EWGAMITKLTVPA  321 (340)
Q Consensus       264 ~dg~i~i~d~--~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~  321 (340)
                      .|+.|++|++  .++   +.+..+. .+  ..|.+++|+|++.++++++.      +..|.+|.++...
T Consensus       328 ~d~~i~iw~~~~~~~~~l~~~~~~~-~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~  393 (450)
T 2vdu_B          328 ATKCIIILEMSEKQKGDLALKQIIT-FP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE  393 (450)
T ss_dssp             TCSEEEEEEECSSSTTCEEEEEEEE-CS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred             CCCeEEEEEeccCCCCceeeccEec-cC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence            8999999999  554   4444443 33  58999999996544444443      4568999987553

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.7e-38  Score=268.74  Aligned_cols=296  Identities=14%  Similarity=0.093  Sum_probs=229.7

Q ss_pred             CCceeEEeeeee-cCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEE-----EecCCCCeeEEEEcC-CC
Q 019482            3 GGGTVTCGSWIK-RPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYV-----FDESEGDPMTIAVNP-SG   75 (340)
Q Consensus         3 ~~~~v~~~~w~~-~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~-~~   75 (340)
                      +..+|+|++|+| +.   .++++|+      .++.|++|+++...............     ..+|...|.+++|+| ++
T Consensus        42 h~~~v~~~~~s~~~~---~~l~~~~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  112 (408)
T 4a11_B           42 HGGGINTLDIEPVEG---RYMLSGG------SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDT  112 (408)
T ss_dssp             CSSCEEEEEECTTTC---CEEEEEE------TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred             cCCcEEEEEEecCCC---CEEEEEc------CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCC
Confidence            568999999999 43   4566655      56679999987443222111000000     135999999999999 77


Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccCCCcEEEEeCCCCceeecccc
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  152 (340)
                      .+|++++.|+.|++||+.+++....+.        +...+.++.|+|.   +.++++++.|+.|++||+++++....+..
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  184 (408)
T 4a11_B          113 GMFTSSSFDKTLKVWDTNTLQTADVFN--------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG  184 (408)
T ss_dssp             TCEEEEETTSEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred             cEEEEEeCCCeEEEeeCCCCccceecc--------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence            899999999999999999887655442        4578899999984   44999999999999999999988888888


Q ss_pred             CccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCe-eEEEee--------------cCCCCceeeEEEccCCCcceEEE
Q 019482          153 AHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGV-AWTFLT--------------RNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       153 ~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      |...|.+++|+|+++. +++++.|+.|++||++++. ++..+.              ..+...|.+++|+|+++.     
T Consensus       185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----  259 (408)
T 4a11_B          185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-----  259 (408)
T ss_dssp             CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-----
T ss_pred             CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-----
Confidence            8889999999999984 8899999999999998765 333331              245568999999999987     


Q ss_pred             EEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i  291 (340)
                      +++++.|+.|++||+++++.......+.     ..+........+..+++++.++.|++||+.+++.+..+. .| ...|
T Consensus       260 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~-~~~v  337 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GH-YKTV  337 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-CC-SSCE
T ss_pred             EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-cC-CCeE
Confidence            7888999999999999887654333221     122222233445667777889999999999999887763 56 5799


Q ss_pred             eeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      ++++|+|++++|++++.||.|++|++.....
T Consensus       338 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          338 DCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             EEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence            9999999999999999999999999986553

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-39  Score=279.93  Aligned_cols=257  Identities=9%  Similarity=0.085  Sum_probs=209.7

Q ss_pred             CeeeEEE-ecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecC---ceeeeeeccccCCCCCCCCCeEEEEEecCCCeE
Q 019482           53 PLVTYVF-DESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYG---GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF  127 (340)
Q Consensus        53 ~~~~~~~-~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  127 (340)
                      ......+ ++|.+.|++++|+| ++++|++|+.||.|++||+.+   +......     ....|...|.+++|+|++++|
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~l  126 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS-----LTYDCSSTVTQITMIPNFDAF  126 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS-----EEEECSSCEEEEEECTTSSEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee-----eeccCCCCEEEEEEeCCCCEE
Confidence            3444566 88999999999999 999999999999999999976   3211101     112378899999999999999


Q ss_pred             EEccCCCcEEEEeCC---CCceeecccc------------CccceeEEE--ecCCCCeEEEeeCCCeEEEEEccCCeeEE
Q 019482          128 AAGGVDGHLRIMHWP---SLRIILDEPK------------AHKSVLDMD--FSLDSEFLATTSTDGSARIWKTEDGVAWT  190 (340)
Q Consensus       128 ~~~~~dg~i~~~d~~---~~~~~~~~~~------------~~~~i~~~~--~~~~~~~l~~~~~d~~v~iwd~~~~~~~~  190 (340)
                      ++++.||.|++||++   +++.......            +...+.++.  +++++++|++++.|+.|++||+++++++.
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            999999999999995   4443322211            334566666  55789999999999999999999999999


Q ss_pred             EeecC-CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEEC----CCCCEEEEeeC
Q 019482          191 FLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSIS----LDGKYLAMGSK  264 (340)
Q Consensus       191 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s----~~~~~l~~~~~  264 (340)
                      .+... +...|.+++|+|++..     +++++.|+.|++||+++++.+..+. .+..+|.+++|+    |++.+|++++.
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~  281 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCV-----LILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS  281 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCE-----EEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred             EEccCCCCCceEEEEECCCCCE-----EEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcC
Confidence            88763 5578999999999987     7899999999999999999888775 677789999665    46889999999


Q ss_pred             CCcEEEEeccCceEeeccccc-------------------------ccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          265 DGDICVVDVKKMEINHWSKRL-------------------------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       265 dg~i~i~d~~~~~~~~~~~~~-------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ||.|++||+++++.+..+...                         | ...|++++|+ ++++|++++.||.|++|++..
T Consensus       282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred             CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence            999999999988866554311                         3 4679999999 789999999999999999976


Q ss_pred             CC
Q 019482          320 PA  321 (340)
Q Consensus       320 ~~  321 (340)
                      ..
T Consensus       360 ~~  361 (437)
T 3gre_A          360 LS  361 (437)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-37  Score=269.83  Aligned_cols=272  Identities=14%  Similarity=0.188  Sum_probs=226.5

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..+|+|++|..     .++++|+      .++.|++|+..        +......+.+|...|.+++|  ++++|++|+.
T Consensus       133 ~~~v~~~~~d~-----~~l~~g~------~dg~i~iwd~~--------~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~  191 (435)
T 1p22_A          133 SKGVYCLQYDD-----QKIVSGL------RDNTIKIWDKN--------TLECKRILTGHTGSVLCLQY--DERVIITGSS  191 (435)
T ss_dssp             CCCEEEEECCS-----SEEEEEE------SSSCEEEEESS--------SCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             CCcEEEEEECC-----CEEEEEe------CCCeEEEEeCC--------CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcC
Confidence            45688888832     4566665      56679999986        44556778899999999999  7889999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee---eccccCccceeEE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII---LDEPKAHKSVLDM  160 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~~~~i~~~  160 (340)
                      ||.|++||+.+++....+.       .|...|.+++|++  .++++++.||.|++||+++++..   ..+.+|...|.++
T Consensus       192 dg~i~vwd~~~~~~~~~~~-------~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  262 (435)
T 1p22_A          192 DSTVRVWDVNTGEMLNTLI-------HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  262 (435)
T ss_dssp             TSCEEEEESSSCCEEEEEC-------CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             CCeEEEEECCCCcEEEEEc-------CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence            9999999999887765553       2778999999974  59999999999999999887655   5566777899999


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      +|  +++++++++.|+.|++||+++++.+..+.. +...+.++.|+  +..     +++++.|+.|++||+++++.+..+
T Consensus       263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~-----l~~g~~dg~i~iwd~~~~~~~~~~  332 (435)
T 1p22_A          263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQYR--DRL-----VVSGSSDNTIRLWDIECGACLRVL  332 (435)
T ss_dssp             EE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEE
T ss_pred             Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC-CCCcEEEEEeC--CCE-----EEEEeCCCeEEEEECCCCCEEEEE
Confidence            99  688999999999999999999999988875 44679999984  444     788999999999999999999999


Q ss_pred             eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce---------EeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                      ..|...+.+++|  ++++|++|+.||.|++||+.+++         .+..+ ..| ...|.+++|  ++++|++++.||.
T Consensus       333 ~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h-~~~v~~l~~--~~~~l~s~s~Dg~  406 (435)
T 1p22_A          333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEH-SGRVFRLQF--DEFQIVSSSHDDT  406 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCC-SSCCCCEEE--CSSCEEECCSSSE
T ss_pred             eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-cCC-CCCeEEEEe--CCCEEEEEeCCCE
Confidence            999999999998  78899999999999999998765         44444 355 578999999  7888999999999


Q ss_pred             EEEEEecCCC
Q 019482          312 AMITKLTVPA  321 (340)
Q Consensus       312 i~iw~~~~~~  321 (340)
                      |++|++....
T Consensus       407 i~iwd~~~~~  416 (435)
T 1p22_A          407 ILIWDFLNDP  416 (435)
T ss_dssp             EEEEC-----
T ss_pred             EEEEECCCCC
Confidence            9999997654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.2e-37  Score=261.78  Aligned_cols=293  Identities=11%  Similarity=0.050  Sum_probs=231.9

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|+|++|+|+..++.++++|+      .++.|++|+++...      ......+.+|...|.+++|+|++++|++++
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~------~dg~i~iw~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGS------WANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEE------TTSEEEEEEECTTS------CEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceEEEEEcCCCCCceEEEEEC------CCCcEEEEEcCCCC------ceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            468999999999642246777666      56669999997422      223356888999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE--ecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF--SVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      .|+.|++||+.+++.....        .|...|.+++|  +|++++|++++.||.|++||+++++.+..+..+ ..+.++
T Consensus       106 ~dg~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~  176 (368)
T 3mmy_A          106 CDKTAKMWDLSSNQAIQIA--------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-ERCYCA  176 (368)
T ss_dssp             TTSEEEEEETTTTEEEEEE--------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-SCEEEE
T ss_pred             CCCcEEEEEcCCCCceeec--------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-CCceEE
Confidence            9999999999988755422        37789999999  889999999999999999999998877766544 466666


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEE-eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC---cE
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW---NK  236 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~  236 (340)
                      .+.  ...+++++.++.+++|+++....... ..........++.+.++..... ..+++++.|+.|++||++..   ..
T Consensus       177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP-TGFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             EEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE-EEEEEEETTSEEEEEESSCSCHHHH
T ss_pred             Eec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC-CeEEEecCCCcEEEEecCCCCcccc
Confidence            666  45788888899999999987654333 3333344566777766654311 11688899999999999987   44


Q ss_pred             EeeeeccCC------------CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE
Q 019482          237 IGHKRLLRK------------PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL  304 (340)
Q Consensus       237 ~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  304 (340)
                      +..+..|..            .|.+++|+|++++|++++.||.|++||+.+++.+..+. .| ..+|.+++|+|++++|+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~v~~~~~s~~g~~l~  331 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-QL-DQPISACCFNHNGNIFA  331 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-CC-SSCEEEEEECTTSSCEE
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-CC-CCCceEEEECCCCCeEE
Confidence            555666654            69999999999999999999999999999999887764 55 57999999999999999


Q ss_pred             EEecCCcEEEEEecCCC
Q 019482          305 TASKEWGAMITKLTVPA  321 (340)
Q Consensus       305 ~~~~dg~i~iw~~~~~~  321 (340)
                      +++.|+..+.|++....
T Consensus       332 ~~s~d~~~~~~~~~~~~  348 (368)
T 3mmy_A          332 YASSYDWSKGHEFYNPQ  348 (368)
T ss_dssp             EEECCCSTTCGGGCCTT
T ss_pred             EEecccccccccccCCC
Confidence            99999877766655433

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-38  Score=291.92  Aligned_cols=291  Identities=10%  Similarity=0.107  Sum_probs=208.7

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec------------------CCC
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------------------SEG   64 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------------------h~~   64 (340)
                      +.++|++++|+|+.  ..++++|+      .++.+ +|++..        ......+.+                  |..
T Consensus       150 h~~~V~sl~~sp~~--~~~l~~g~------~dg~v-lWd~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          150 RLSPIVSIQWNPRD--IGTVLISY------EYVTL-TYSLVE--------NEIKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             CCCCCCEEEEETTE--EEEEEEEC------SSCEE-EEETTT--------TEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             CCCCeEEEEEccCC--CCEEEEEe------CCCcE-EEECCC--------CceEEEEecccCCcCCCcccccccccccCC
Confidence            35789999999952  24566555      55669 999872        233333443                  367


Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee--ecc---cc------CCCCCCCCCeEEEEEec----CC-CeEE
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN--LLA---KK------MPPLQDAGPQKCLSFSV----DG-SRFA  128 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~--~~~---~~------~~~~~~~~~v~~~~~~~----~~-~~l~  128 (340)
                      .|++++|+|+|++|++++.|+.|++||+.+++....  +..   ..      ...+.+...|.+++|++    ++ .+|+
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~  292 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI  292 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence            899999999999999999999999999988765432  100   00      00012344677777743    21 2334


Q ss_pred             Ec----------------------------------------------------------------------------cC
Q 019482          129 AG----------------------------------------------------------------------------GV  132 (340)
Q Consensus       129 ~~----------------------------------------------------------------------------~~  132 (340)
                      +|                                                                            +.
T Consensus       293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~  372 (902)
T 2oaj_A          293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG  372 (902)
T ss_dssp             EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred             eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence            33                                                                            33


Q ss_pred             CCcEEEEeCCCCceeec-------cccCcc----------------------------------ceeEEEecCCCCeEEE
Q 019482          133 DGHLRIMHWPSLRIILD-------EPKAHK----------------------------------SVLDMDFSLDSEFLAT  171 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~~-------~~~~~~----------------------------------~i~~~~~~~~~~~l~~  171 (340)
                      ||.|++||+.++.....       +..|+.                                  .+..++|+|++++|++
T Consensus       373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS  452 (902)
T 2oaj_A          373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT  452 (902)
T ss_dssp             TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred             CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence            45566666654432211       111222                                  3344566889999999


Q ss_pred             eeCCCeEEEEEccCCeeE----EEee------cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc------
Q 019482          172 TSTDGSARIWKTEDGVAW----TFLT------RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------  235 (340)
Q Consensus       172 ~~~d~~v~iwd~~~~~~~----~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------  235 (340)
                      |+.|++|++||+.+++..    ....      ..+...|.+++|+|+++.     +++++.|++|++||+.+++      
T Consensus       453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~-----LAsgs~DgtV~lwd~~~~~~~~~~~  527 (902)
T 2oaj_A          453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLE-----LAVSIETGDVVLFKYEVNQFYSVEN  527 (902)
T ss_dssp             EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTE-----EEEEETTSCEEEEEEEECCC-----
T ss_pred             ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCe-----EEEEecCcEEEEEEecCccccCccc
Confidence            999999999999877421    1111      145568999999999997     8999999999999997652      


Q ss_pred             ---------------------------------------EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482          236 ---------------------------------------KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       236 ---------------------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  276 (340)
                                                             ++..+..|.+.|++++|+||| +||+|+.|+.|++||+++.
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~  606 (902)
T 2oaj_A          528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP  606 (902)
T ss_dssp             ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred             cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence                                                   356677899999999999999 9999999999999999887


Q ss_pred             eEeec--c--c-ccccccceeeEEEe-----cCC---eEEEEEecCCcEEEEEe
Q 019482          277 EINHW--S--K-RLHLGTSIALVEFC-----PTQ---RVVLTASKEWGAMITKL  317 (340)
Q Consensus       277 ~~~~~--~--~-~~~~~~~i~~~~~~-----~~~---~~l~~~~~dg~i~iw~~  317 (340)
                      ..+..  +  . .+| ...|++++|+     |||   ++|++|+.|++|++|++
T Consensus       607 ~~~~~~~~~~~~~gh-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          607 AIIYMENIREISGAQ-SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEEEEEEGGGTCSSC-CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             eEEEEeehhHhcccc-ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            76531  1  1 155 5789999999     885   89999999999999999

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.7e-38  Score=268.51  Aligned_cols=272  Identities=14%  Similarity=0.136  Sum_probs=219.5

Q ss_pred             EEEecCCCCeeEEEEcCC----CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC----CCeEE
Q 019482           57 YVFDESEGDPMTIAVNPS----GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GSRFA  128 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~  128 (340)
                      ....+|.+.|.+++|+|+    ...+++++.++.|++||+.+++....+....  ...|...|.+++|+|+    +++|+
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~l~   89 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV--DADADENFYTCAWTYDSNTSHPLLA   89 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE--CSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc--ccCCCCcEEEEEeccCCCCCCCEEE
Confidence            345689999999999984    4567777777799999999776554443221  1136688999999998    66999


Q ss_pred             EccCCCcEEEEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEee--cCCCCceeeEEE
Q 019482          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT--RNSDEKIELCRF  205 (340)
Q Consensus       129 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~  205 (340)
                      +++.||.|++||+.+++.+..+..|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.  ..+...|.+++|
T Consensus        90 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             EEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             EecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            999999999999999998888888889999999999 99999999999999999999999888873  346678999999


Q ss_pred             ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec----------------------------cCCCeeEEEECCCCC
Q 019482          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----------------------------LRKPASVLSISLDGK  257 (340)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----------------------------~~~~i~~~~~s~~~~  257 (340)
                      +|++..     +++++.|+.|++||+++++....+..                            |...|.+++|+  ++
T Consensus       170 ~~~~~~-----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~  242 (366)
T 3k26_A          170 DLLGEK-----IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD  242 (366)
T ss_dssp             CTTSSE-----EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT
T ss_pred             CCCCCE-----EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC
Confidence            999987     78889999999999998765433332                            78899999998  77


Q ss_pred             EEEEeeCCCcEEEEeccCceE--------------eecccccccccceeeEEEecC--CeEEEEEecCCcEEEEEecCCC
Q 019482          258 YLAMGSKDGDICVVDVKKMEI--------------NHWSKRLHLGTSIALVEFCPT--QRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       258 ~l~~~~~dg~i~i~d~~~~~~--------------~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ++++++.|+.|++||+.+++.              +..+ ..| ...|.+++|+|+  +++|++++.||.|++|++....
T Consensus       243 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          243 LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYS-QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECS-SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-ccc-CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            999999999999999987643              3222 334 568999999999  9999999999999999997654


Q ss_pred             CCC-CCcccccc--ccccccC
Q 019482          322 DWK-GLSLPLLH--SHSQNSV  339 (340)
Q Consensus       322 ~~~-~~~~~~~h--~~~v~~v  339 (340)
                      ... .......|  ...|.++
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~  341 (366)
T 3k26_A          321 PHKAKCTTLTHHKCGAAIRQT  341 (366)
T ss_dssp             GGGCEEEEECCTTCCSCEEEE
T ss_pred             CccccceEEcccccCCceEEE
Confidence            322 12234444  4555543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-37  Score=264.92  Aligned_cols=255  Identities=12%  Similarity=0.091  Sum_probs=206.3

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCC-CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEE
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSG-DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAA  129 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~  129 (340)
                      .......+.+|...|++++|+|++ ++|++++.|+.|++||+.+.+....+..     ..|...|.+++|+| ++++|++
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s  136 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-----MGPGDAITGMKFNQFNTNQLFV  136 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-----CSTTCBEEEEEEETTEEEEEEE
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-----CCcCCceeEEEeCCCCCCEEEE
Confidence            344566789999999999999999 8999999999999999987765444321     23789999999999 7899999


Q ss_pred             ccCCCcEEEEeCCCCceeeccccCc---cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEc
Q 019482          130 GGVDGHLRIMHWPSLRIILDEPKAH---KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       130 ~~~dg~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~  206 (340)
                      ++.|+.|++||+++ .....+..+.   ..|.+++|+|++++|++++.|+.|++||+ +++.+..+.. +...|.+++|+
T Consensus       137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h~~~v~~~~~~  213 (383)
T 3ei3_B          137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL-HKAKVTHAEFN  213 (383)
T ss_dssp             EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC-SSSCEEEEEEC
T ss_pred             EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc-CCCcEEEEEEC
Confidence            99999999999986 4444444433   67999999999999999999999999999 5677777764 45689999999


Q ss_pred             cCCCcceEEEEEecCCcceEEEEECCC----CcEEeeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          207 KDGTKPFLFCTVQRGDKALLAVYDIST----WNKIGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      |+++..    +++++.|+.|++||+++    +..+..+ .|...+.+++|+| ++++|++++.|+.|++||+++++....
T Consensus       214 ~~~~~~----l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  288 (383)
T 3ei3_B          214 PRCDWL----MATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ  288 (383)
T ss_dssp             SSCTTE----EEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred             CCCCCE----EEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence            999832    78889999999999997    5555555 6889999999999 999999999999999999998766544


Q ss_pred             ccc------cc---------cccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          282 SKR------LH---------LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       282 ~~~------~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +..      .|         ....+..++|+|++++  +++.||.|++|++....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~  341 (383)
T 3ei3_B          289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG  341 (383)
T ss_dssp             EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred             cccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence            321      11         0123344666666665  77899999999987554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.3e-36  Score=262.41  Aligned_cols=275  Identities=15%  Similarity=0.227  Sum_probs=234.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|++++|++     .++++|+      .++.|++|++.        +......+.+|...|.+++|+  ++.+++++
T Consensus       158 h~~~v~~~~~~~-----~~l~s~~------~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s  216 (445)
T 2ovr_B          158 HTGGVWSSQMRD-----NIIISGS------TDRTLKVWNAE--------TGECIHTLYGHTSTVRCMHLH--EKRVVSGS  216 (445)
T ss_dssp             CSSCEEEEEEET-----TEEEEEE------TTSCEEEEETT--------TTEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             CCCCEEEEEecC-----CEEEEEe------CCCeEEEEECC--------cCcEEEEECCCCCcEEEEEec--CCEEEEEe
Confidence            457889999974     3566555      56679999987        455667788999999999995  67899999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+.|++||+.+++....+..       |...|.+++|  +++++++++.||.|++||+++++.+..+..|...|.++.|
T Consensus       217 ~dg~i~~wd~~~~~~~~~~~~-------~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  287 (445)
T 2ovr_B          217 RDATLRVWDIETGQCLHVLMG-------HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF  287 (445)
T ss_dssp             TTSEEEEEESSSCCEEEEEEC-------CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEcC-------CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE
Confidence            999999999998876655532       7789999999  7889999999999999999999988888888889999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                        +++++++++.|+.|++||+++++.+..+..+ ...+.++.++  +..     +++++.|+.|++||+++++.+..+..
T Consensus       288 --~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~~~-----l~~~~~dg~i~vwd~~~~~~~~~~~~  357 (445)
T 2ovr_B          288 --DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK--DNI-----LVSGNADSTVKIWDIKTGQCLQTLQG  357 (445)
T ss_dssp             --CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE--TTE-----EEEEETTSCEEEEETTTCCEEEEECS
T ss_pred             --CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe--CCE-----EEEEeCCCeEEEEECCCCcEEEEEcc
Confidence              7889999999999999999999998888754 4567777775  444     78889999999999999998888876


Q ss_pred             ---cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc----ccccccceeeEEEecCCeEEEEEecCCc----
Q 019482          243 ---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK----RLHLGTSIALVEFCPTQRVVLTASKEWG----  311 (340)
Q Consensus       243 ---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~----  311 (340)
                         +...|.+++|+  +++|++++.||.|++||+.+++.+..+.    ..+ ...|++++|+|++.++++++.||.    
T Consensus       358 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~la~~~~dg~~~~~  434 (445)
T 2ovr_B          358 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS-GGVVWRIRASNTKLVCAVGSRNGTEETK  434 (445)
T ss_dssp             TTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG-TCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred             CCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCC-CceEEEEEecCCEEEEEEcccCCCCccE
Confidence               77889999995  5799999999999999999998776652    233 578999999999999999999998    


Q ss_pred             EEEEEecCC
Q 019482          312 AMITKLTVP  320 (340)
Q Consensus       312 i~iw~~~~~  320 (340)
                      +.||+++..
T Consensus       435 l~v~df~~~  443 (445)
T 2ovr_B          435 LLVLDFDVD  443 (445)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEECCCC
Confidence            999999754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9e-38  Score=258.87  Aligned_cols=246  Identities=10%  Similarity=0.095  Sum_probs=195.8

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~   80 (340)
                      +..+|++++|+|   ++.++++|+      .|+.|++|++...      .......+.+|.+.|.+++|+|  ++++|++
T Consensus        12 H~~~V~~v~~s~---~g~~lasgs------~D~~v~lwd~~~~------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s   76 (316)
T 3bg1_A           12 HEDMIHDAQMDY---YGTRLATCS------SDRSVKIFDVRNG------GQILIADLRGHEGPVWQVAWAHPMYGNILAS   76 (316)
T ss_dssp             --CCEEEEEECG---GGCEEEEEE------TTTEEEEEEEETT------EEEEEEEEECCSSCEEEEEECCGGGSSCEEE
T ss_pred             ccCeEEEeeEcC---CCCEEEEEe------CCCeEEEEEecCC------CcEEEEEEcCCCccEEEEEeCCCCCCCEEEE
Confidence            467899999999   455777666      5677999998632      1224467899999999999986  4899999


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCce---eeccccCcc
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHK  155 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~  155 (340)
                      ++.|++|++||+.++........     ..|...|.+++|+|+  +.+|++++.|+.|++||++++..   ...+..|..
T Consensus        77 ~s~D~~v~iWd~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           77 CSYDRKVIIWREENGTWEKSHEH-----AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             EETTSCEEEECCSSSCCCEEEEE-----CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             EECCCEEEEEECCCCcceEEEEc-----cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            99999999999987642111111     137789999999997  78999999999999999987532   344556777


Q ss_pred             ceeEEEecCC-----------------CCeEEEeeCCCeEEEEEccCC---eeEEEeecCCCCceeeEEEccCC----Cc
Q 019482          156 SVLDMDFSLD-----------------SEFLATTSTDGSARIWKTEDG---VAWTFLTRNSDEKIELCRFSKDG----TK  211 (340)
Q Consensus       156 ~i~~~~~~~~-----------------~~~l~~~~~d~~v~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~  211 (340)
                      .+.+++|+|+                 +++|++|+.|++|++||++..   +++..+. .|...|.+++|+|++    ..
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCE
T ss_pred             CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCce
Confidence            8999999997                 468999999999999999755   3455554 455789999999986    44


Q ss_pred             ceEEEEEecCCcceEEEEECCCCc----EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWN----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                           +++++.|+.|++||+++..    ....+..+...|.+++|+|++++|++++.|+.|++|+..
T Consensus       231 -----las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          231 -----IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             -----EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             -----EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence                 7899999999999997631    123456678899999999999999999999999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-38  Score=289.24  Aligned_cols=254  Identities=14%  Similarity=0.133  Sum_probs=210.3

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--eeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccC
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGV  132 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~  132 (340)
                      ..+.+|.+.|++++|+|++++|++|+.||.|++||+.+..  ....+.       .|.++|.+++|+|+  +++|++|+.
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-------~h~~~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCTTSCSEEEEEET
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-------CCcCceEEEEecCCCCCCEEEEEeC
Confidence            4578999999999999999999999999999999998443  222222       37899999999988  999999999


Q ss_pred             CCcEEEEeCCCCc--eeeccccCccceeEEEecCC--CCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEc
Q 019482          133 DGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLD--SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       133 dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~  206 (340)
                      ||.|++||+.+++  .......|...|.+++|+|+  ++++++|+.||.|++||++++..  ...+. .+...+.+++|+
T Consensus        76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~  154 (753)
T 3jro_A           76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWA  154 (753)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEEC
T ss_pred             CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEec
Confidence            9999999999886  56667778889999999998  99999999999999999988733  23333 456789999999


Q ss_pred             c-------------CCCcceEEEEEecCCcceEEEEECCCC----cEEeeeeccCCCeeEEEECCC---CCEEEEeeCCC
Q 019482          207 K-------------DGTKPFLFCTVQRGDKALLAVYDISTW----NKIGHKRLLRKPASVLSISLD---GKYLAMGSKDG  266 (340)
Q Consensus       207 ~-------------~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg  266 (340)
                      |             ++..     +++++.|+.|++||++++    .....+..|..+|.+++|+|+   ++++++++.||
T Consensus       155 p~~~~~~~~~~~~~d~~~-----l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          155 PATIEEDGEHNGTKESRK-----FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             CCC---------CGGGCC-----EEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             CcccccccccccCCCCCE-----EEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            9             4666     788999999999999887    455667788999999999999   99999999999


Q ss_pred             cEEEEeccCceEe---e-cccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCC
Q 019482          267 DICVVDVKKMEIN---H-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK  324 (340)
Q Consensus       267 ~i~i~d~~~~~~~---~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  324 (340)
                      .|++||+.+++..   . .....| ...|++++|+|++++|++++.||.|++|++.....+.
T Consensus       230 ~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~  290 (753)
T 3jro_A          230 TCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  290 (753)
T ss_dssp             CEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred             EEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence            9999999886421   1 111224 5789999999999999999999999999998655443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-36  Score=264.60  Aligned_cols=284  Identities=13%  Similarity=0.162  Sum_probs=231.2

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEc--CCCCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PSGDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~   80 (340)
                      +.++|++++|+++.    ++++|+      .++.|++|+++        +......+.+|...|.+++|+  +++.++++
T Consensus       161 h~~~V~~l~~~~~~----~l~s~s------~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s  222 (464)
T 3v7d_B          161 HDGGVWALKYAHGG----ILVSGS------TDRTVRVWDIK--------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT  222 (464)
T ss_dssp             CSSCEEEEEECSTT----EEEEEE------TTSCEEEEETT--------TTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred             CCcCEEEEEEcCCC----EEEEEe------CCCCEEEEECC--------CCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence            46789999998842    566555      56779999987        455667788999999999998  57789999


Q ss_pred             EecCCCEEEEEecCceeeeeeccc----------------cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482           81 STTNGGCKLFEVYGGATDINLLAK----------------KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      ++.|+.|++||+.+..........                ......|...+.++  +++++++++++.||.|++||+.++
T Consensus       223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~  300 (464)
T 3v7d_B          223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM  300 (464)
T ss_dssp             EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT
T ss_pred             EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999999999876533211000                00011355667766  678899999999999999999999


Q ss_pred             ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      +.+..+..|...|.+++|+|+++++++++.|+.|++||+++++++..+.. +...+.+++|++  ..     +++++.|+
T Consensus       301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~-----l~s~s~dg  372 (464)
T 3v7d_B          301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLSD--KF-----LVSAAADG  372 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECS--SE-----EEEEETTS
T ss_pred             cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCcEEEEEEcC--CE-----EEEEeCCC
Confidence            99988888889999999999999999999999999999999999988875 456899999984  44     78899999


Q ss_pred             eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE
Q 019482          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL  304 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  304 (340)
                      .|++||++++...... .+...+..++|+|+++++++++ ||.|++||+++++.+......| ...|.+++|+ +..+++
T Consensus       373 ~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~-~~~v~~v~~~-~~~l~~  448 (464)
T 3v7d_B          373 SIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD-ADQIWSVNFK-GKTLVA  448 (464)
T ss_dssp             EEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTT-CSEEEEEEEE-TTEEEE
T ss_pred             cEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccC-CCcEEEEEec-CCEEEE
Confidence            9999999998765444 3556788899999999999998 8999999999999988655556 6799999997 456777


Q ss_pred             EEecCCcEEEEEec
Q 019482          305 TASKEWGAMITKLT  318 (340)
Q Consensus       305 ~~~~dg~i~iw~~~  318 (340)
                      +++.||.+.+|-++
T Consensus       449 ~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          449 AVEKDGQSFLEILD  462 (464)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEEeCCeEEEEEee
Confidence            77788888777664

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-37  Score=253.15  Aligned_cols=261  Identities=13%  Similarity=0.130  Sum_probs=216.8

Q ss_pred             CCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           52 SPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        52 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .......+.+|.+.|++++| |++++|++++.||.|++||+.+......+..       |...|.+++|+|++++|++++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~   78 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT-------GQGFLNSVCYDSEKELLLFGG   78 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE-------CSSCEEEEEEETTTTEEEEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec-------CCccEEEEEECCCCCEEEEec
Confidence            34566789999999999999 9999999999999999999988776555443       678999999999999999999


Q ss_pred             CCCcEEEEeCCCC---ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-
Q 019482          132 VDGHLRIMHWPSL---RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-  207 (340)
Q Consensus       132 ~dg~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-  207 (340)
                      .||.|++|++...   +....+..|...|.++.|  +++++++++.|+.|++||  .++....+.. +...+.++.|.| 
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~-~~~~v~~~~~~~~  153 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA-HNASVWDAKVVSF  153 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC-CSSCEEEEEEEET
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc-CCCceeEEEEccC
Confidence            9999999998754   445566778889999999  577999999999999999  5666666664 456899999998 


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcEEeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  286 (340)
                      ++..     +++++.|+.|++||  ..+....+.. +...+.+++|+|++. +++++.||.|++||+++++.+..+. .|
T Consensus       154 ~~~~-----l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~  224 (313)
T 3odt_A          154 SENK-----FLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GH  224 (313)
T ss_dssp             TTTE-----EEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CC
T ss_pred             CCCE-----EEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cC
Confidence            7775     78889999999999  4455556666 788999999999998 8999999999999999998887763 45


Q ss_pred             cccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          287 LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       287 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                       ..+|.+++|+|++ .|++++.||.|++|++....   .......|...+.++
T Consensus       225 -~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~i~~~  272 (313)
T 3odt_A          225 -ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS---LKQVITLPAISIWSV  272 (313)
T ss_dssp             -SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC---EEEEEECSSSCEEEE
T ss_pred             -CceEEEEEEecCC-CEEEEecCCEEEEEECCCCc---eeEEEeccCceEEEE
Confidence             5799999999999 59999999999999987554   334445555555443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.3e-36  Score=261.41  Aligned_cols=270  Identities=17%  Similarity=0.238  Sum_probs=229.8

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      ++|+++..     .++++|+      .++.|++|++.        +......+.+|...|.+++|+  ++++++++.||.
T Consensus       122 ~~~~~~~g-----~~l~sg~------~dg~i~vwd~~--------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          122 ITCLQFCG-----NRIVSGS------DDNTLKVWSAV--------TGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             EEEEEEET-----TEEEEEE------TTSCEEEEETT--------TCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             EEEEEEcC-----CEEEEEE------CCCcEEEEECC--------CCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            46655542     4566665      56679999987        445567788999999999997  679999999999


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCC
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS  166 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  166 (340)
                      |++||+.+++....+.       .|...|.++.|+  ++.+++++.||.|++||+++++....+..|...|.++.|  ++
T Consensus       181 i~vwd~~~~~~~~~~~-------~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~  249 (445)
T 2ovr_B          181 LKVWNAETGECIHTLY-------GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG  249 (445)
T ss_dssp             EEEEETTTTEEEEEEC-------CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS
T ss_pred             EEEEECCcCcEEEEEC-------CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC
Confidence            9999999887766553       277899999995  568999999999999999999988888888889999999  68


Q ss_pred             CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCC
Q 019482          167 EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP  246 (340)
Q Consensus       167 ~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  246 (340)
                      +++++++.|+.|++||+++++++..+.. +...+.+++|  ++..     +++++.|+.|++||+++++.+..+..+...
T Consensus       250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~-----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  321 (445)
T 2ovr_B          250 RRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGIH-----VVSGSLDTSIRVWDVETGNCIHTLTGHQSL  321 (445)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CSSE-----EEEEETTSCEEEEETTTCCEEEEECCCCSC
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CCCE-----EEEEeCCCeEEEEECCCCCEEEEEcCCccc
Confidence            8999999999999999999999888874 4567999999  6665     788899999999999999999999999888


Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc--cccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       247 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +.++.+  +++++++++.||.|++||+++++.+..+..  .| ..+|.+++|+  +++|++++.||.|++|++....
T Consensus       322 v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~  393 (445)
T 2ovr_B          322 TSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE  393 (445)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence            888776  567999999999999999999888776642  24 5789999995  5799999999999999997655

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=269.57  Aligned_cols=245  Identities=12%  Similarity=0.076  Sum_probs=196.4

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCcee-----------eeeeccccCCCCCCC------------CCeEEE
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGAT-----------DINLLAKKMPPLQDA------------GPQKCL  118 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~-----------~~~~~~~~~~~~~~~------------~~v~~~  118 (340)
                      |.+.|++++|+|+|++||+|+.||.|+||++.+.+.           ...+.       .|.            ..|.++
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~~~~~~~~~~~~~V~~l   99 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-------SHEPEFDYLKSLEIEEKINKI   99 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-------CCCCEEEGGGTEEECCCCCEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-------cccccccccccccccCceEEE
Confidence            578899999999999999999999999999987652           22222       254            789999


Q ss_pred             EEecCC--CeEEEccCCCcEEEEeCCCCceee---------------------------------------c-cccCccc
Q 019482          119 SFSVDG--SRFAAGGVDGHLRIMHWPSLRIIL---------------------------------------D-EPKAHKS  156 (340)
Q Consensus       119 ~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~---------------------------------------~-~~~~~~~  156 (340)
                      +|+|++  .+|++++.|+.|++||+.+++...                                       . ...|...
T Consensus       100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence            999998  789999999999999987644310                                       1 2457779


Q ss_pred             eeEEEecCCCCeEEEeeCCCeEEEEEccC-CeeEEEe------ecCCCCceeeEEEccCC-CcceEEEEEecCCcceEEE
Q 019482          157 VLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFL------TRNSDEKIELCRFSKDG-TKPFLFCTVQRGDKALLAV  228 (340)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~d~~i~i  228 (340)
                      |.+++|+|++++|++| .|+.|++||+++ ++.+..+      ...+...|.+++|+|++ ..     +++++.|+.|++
T Consensus       180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-----l~s~~~dg~i~i  253 (447)
T 3dw8_B          180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT-----FVYSSSKGTIRL  253 (447)
T ss_dssp             CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE-----EEEEETTSCEEE
T ss_pred             eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE-----EEEEeCCCeEEE
Confidence            9999999999999998 799999999984 4444432      23456789999999998 65     788999999999


Q ss_pred             EECCCCcE----EeeeeccCC------------CeeEEEECCCCCEEEEeeCCCcEEEEeccC-ceEeecccccccc---
Q 019482          229 YDISTWNK----IGHKRLLRK------------PASVLSISLDGKYLAMGSKDGDICVVDVKK-MEINHWSKRLHLG---  288 (340)
Q Consensus       229 ~d~~~~~~----~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~---  288 (340)
                      ||+++++.    +..+..+..            .|.+++|+|++++|++++. +.|++||+++ ++++..+. .|..   
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~  331 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYLRS  331 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGGTT
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee-ccccccc
Confidence            99999886    566777765            8999999999999999998 9999999987 66665543 3311   


Q ss_pred             --------c---ceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          289 --------T---SIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       289 --------~---~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                              .   .+..++|+|++++|++++.||.|++|++....
T Consensus       332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence                    0   13349999999999999999999999987543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-36  Score=254.71  Aligned_cols=247  Identities=11%  Similarity=0.115  Sum_probs=200.8

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC--CCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~   80 (340)
                      +..+|++++|+|+   ..++++|+      .++.|++|+++..      .......+.+|...|++++|+|+  +++|++
T Consensus        10 h~~~v~~~~~s~~---~~~l~~~~------~dg~i~iw~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   74 (379)
T 3jrp_A           10 HNELIHDAVLDYY---GKRLATCS------SDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGTILAS   74 (379)
T ss_dssp             CCCCEEEEEECSS---SSEEEEEE------TTSCEEEEEEETT------EEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             CcccEEEEEEcCC---CCEEEEEE------CCCcEEEEecCCC------cceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence            4678999999994   45677665      5666999999632      23445678899999999999987  899999


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCc--eeeccccCccc
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKS  156 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~  156 (340)
                      ++.|+.|++||+.+++.......     ..|...|.+++|+|+  +++|++++.|+.|++||+.++.  ....+..|...
T Consensus        75 ~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  149 (379)
T 3jrp_A           75 CSYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  149 (379)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred             eccCCEEEEEEcCCCceeEeeee-----cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence            99999999999998762222111     127789999999999  9999999999999999998773  33445567789


Q ss_pred             eeEEEecC-------------CCCeEEEeeCCCeEEEEEccCCee----EEEeecCCCCceeeEEEccC---CCcceEEE
Q 019482          157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKD---GTKPFLFC  216 (340)
Q Consensus       157 i~~~~~~~-------------~~~~l~~~~~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~~~~~~  216 (340)
                      |.+++|+|             ++++|++++.|+.|++||+++++.    ...+. .+...|.+++|+|+   +..     
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~-----  223 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSY-----  223 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEE-----
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCe-----
Confidence            99999999             699999999999999999987653    23343 45678999999999   665     


Q ss_pred             EEecCCcceEEEEECCCCc-----EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      +++++.|+.|++||++++.     .+.....+...+.+++|+|++++|++++.||.|++|++..
T Consensus       224 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            7888999999999999864     2222233678899999999999999999999999999873

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=9.9e-38  Score=261.58  Aligned_cols=262  Identities=14%  Similarity=0.115  Sum_probs=213.1

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLR  137 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~  137 (340)
                      ..+|.+.|.+++|+|++++|++++.|+.|++|++.+..........    ..|...|.+++|+|+++ +|++++.||.|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE----EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee----eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            3479999999999999999999999999999999877611111110    13778999999999999 999999999999


Q ss_pred             EEeC-CCCceeecccc--CccceeEEEecCCCCeEEEeeCCCeEEEEEccC---------CeeEEEeecCCCCceeeEEE
Q 019482          138 IMHW-PSLRIILDEPK--AHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---------GVAWTFLTRNSDEKIELCRF  205 (340)
Q Consensus       138 ~~d~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---------~~~~~~~~~~~~~~v~~~~~  205 (340)
                      +||+ .+++. ..+..  |...|.+++|+| +++|++++.|+.|++||+++         ++++..+.  +...+.+++|
T Consensus        83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~  158 (342)
T 1yfq_A           83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDT  158 (342)
T ss_dssp             EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEE
T ss_pred             EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEe
Confidence            9999 77655 55666  888999999999 99999999999999999987         66666554  5578999999


Q ss_pred             ccCCCcceEEEEEecCCcceEEEEECCC-CcE--EeeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCc-----
Q 019482          206 SKDGTKPFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKM-----  276 (340)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~-----  276 (340)
                      +|++       +++++.++.|++||+++ +..  ......+...+.+++|+| +++++++++.||.|++|+++..     
T Consensus       159 ~~~~-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          159 NSSR-------LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             CSSE-------EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             cCCc-------EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            9886       46778899999999998 543  334456678899999999 9999999999999999999876     


Q ss_pred             -eEeeccccccc--------ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccc-ccccccC
Q 019482          277 -EINHWSKRLHL--------GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLH-SHSQNSV  339 (340)
Q Consensus       277 -~~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h-~~~v~~v  339 (340)
                       +....+ ..|.        ...|.+++|+|++++|++++.||.|++|++....   .......| ...|.++
T Consensus       232 ~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~~  300 (342)
T 1yfq_A          232 SSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK---KIKNFAKFNEDSVVKI  300 (342)
T ss_dssp             CTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---EEEECCCCSSSEEEEE
T ss_pred             cccceee-ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh---HhhhhhcccCCCceEe
Confidence             444333 2331        2389999999999999999999999999996543   34445555 7766654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.6e-38  Score=270.15  Aligned_cols=270  Identities=12%  Similarity=0.078  Sum_probs=204.7

Q ss_pred             eEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCC
Q 019482           56 TYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD  133 (340)
Q Consensus        56 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d  133 (340)
                      .....+|...|++++|+| ++++||+|+.||.|+|||+.+.+......     ...|.+.|.+++|+| ++++|++++.|
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----~~gH~~~V~~l~f~p~~~~~l~s~s~D  186 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----GIGAGGSITGLKFNPLNTNQFYASSME  186 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----CCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----ccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence            345678999999999999 56789999999999999998765433221     124889999999998 68899999999


Q ss_pred             CcEEEEeCCCCceeeccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          134 GHLRIMHWPSLRIILDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      |+|++||++++........+  ...+.+++|+|++++|++|+.||.|++||++. +.+..+.. |...|.+++|+|++..
T Consensus       187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~-h~~~v~~v~~~p~~~~  264 (435)
T 4e54_B          187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRM-HKKKVTHVALNPCCDW  264 (435)
T ss_dssp             SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBC-CSSCEEEEEECTTCSS
T ss_pred             CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEec-ccceEEeeeecCCCce
Confidence            99999999875443222222  23578999999999999999999999999864 55555654 5568999999999886


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEe---eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc-
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIG---HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL-  287 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-  287 (340)
                      +    +++++.|+.|++||+++.+...   ....|...|++++|+|+|++|++++.||.|++||+.+++....+. .|. 
T Consensus       265 ~----~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~-~~~~  339 (435)
T 4e54_B          265 F----LATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI-PHPH  339 (435)
T ss_dssp             E----EEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC-CCCC
T ss_pred             E----EEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe-cccc
Confidence            3    5788899999999998876433   335678899999999999999999999999999999877654432 111 


Q ss_pred             ----ccceeeEEEecCCeEEEEEe------------cCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          288 ----GTSIALVEFCPTQRVVLTAS------------KEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       288 ----~~~i~~~~~~~~~~~l~~~~------------~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                          ...+..+.|+|++.++++++            .++.|++|+......  ...+...|...|.++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~~~~~~~v~s~  405 (435)
T 4e54_B          340 RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLYDPESSGISSL  405 (435)
T ss_dssp             CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEECCSSCCCCCCE
T ss_pred             cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEeCCCCCcEEEE
Confidence                11344567788777776664            235799999865432  122344566666543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=8.3e-37  Score=260.59  Aligned_cols=298  Identities=12%  Similarity=0.074  Sum_probs=201.9

Q ss_pred             CceeEEeeeeecC-CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccC-CeeeEEEecCCCCeeEEEE----------
Q 019482            4 GGTVTCGSWIKRP-ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTS-PLVTYVFDESEGDPMTIAV----------   71 (340)
Q Consensus         4 ~~~v~~~~w~~~~-~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~----------   71 (340)
                      ....+++.|.... ....+++.|       .++.|.+|.+.......... .......-.|...+..+.|          
T Consensus        15 ~~~p~~~~w~~~~~~~~~l~a~g-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (393)
T 4gq1_A           15 NVRPYTTTWCSQSPSCSNLLAIG-------HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENL   87 (393)
T ss_dssp             TCCEEEEEECTTSGGGTTEEEEE-------ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-
T ss_pred             CCCCeEEEEeCCCCCCCCEEEEE-------CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccc
Confidence            4556788896432 234677744       45668899876443222111 1111111123333444443          


Q ss_pred             ----------cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec--------CCCeEEEccCC
Q 019482           72 ----------NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV--------DGSRFAAGGVD  133 (340)
Q Consensus        72 ----------~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d  133 (340)
                                .+++.+|++++.|++|+|||...++.......  .....|.+.|.+++|+|        |+++|++++.|
T Consensus        88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~--~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVL--GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEE--CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeee--cccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence                      44566899999999999999998765433221  11235889999999998        78999999999


Q ss_pred             CcEEEEeCCCCceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEee-------------------
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-------------------  193 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-------------------  193 (340)
                      ++|++||+.++........|+..+.+++|+|++ ++|++++.|++|++||+++++......                   
T Consensus       166 ~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          166 CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            999999999888888888899999999999977 479999999999999998876543321                   


Q ss_pred             -----cCCCCceeeEEEc-cCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEE-----------------
Q 019482          194 -----RNSDEKIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL-----------------  250 (340)
Q Consensus       194 -----~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~-----------------  250 (340)
                           ..+...+.++.|+ |+++.     +++++.|+.+++||+..++....+..+...+..+                 
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~-----l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSG-----ILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG  320 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCE-----EEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSC
T ss_pred             eeeecccccccceeeeeecCCCCE-----EEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCccee
Confidence                 1234567888887 78887     7889999999999998876655554443333222                 


Q ss_pred             -EECC--CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          251 -SISL--DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       251 -~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                       .++|  ++.++++|+.||.|++||+.+++...... .| ..+|.+++|+|||++||+++.|| +.+|++.
T Consensus       321 ~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~-~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          321 ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QL-GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-EC-SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence             3333  34467788899999999999988766553 44 46999999999999999998765 6666664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-36  Score=260.73  Aligned_cols=267  Identities=12%  Similarity=0.063  Sum_probs=217.0

Q ss_pred             CeeeEEEecCCCCee--EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482           53 PLVTYVFDESEGDPM--TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~--~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (340)
                      +.......+|...+.  +++|+  +..+++++.|+.|++||+.+++.......      .|...|.+++|+|++++|+++
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~------~~~~~v~~v~~s~~~~~l~~~  152 (401)
T 4aez_A           81 PERVLDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAET------DESTYVASVKWSHDGSFLSVG  152 (401)
T ss_dssp             CSEEEECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEEC------CTTCCEEEEEECTTSSEEEEE
T ss_pred             cceeeeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeec------CCCCCEEEEEECCCCCEEEEE
Confidence            334444557776644  45555  46688899999999999998876554432      267899999999999999999


Q ss_pred             cCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCC
Q 019482          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      +.||.|++||+.+++.+..+..|...|.+++|+  ++++++++.|+.|++||++. ...+..+. .+...|.+++|+|++
T Consensus       153 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~  229 (401)
T 4aez_A          153 LGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRSDG  229 (401)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTS
T ss_pred             CCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcCCC
Confidence            999999999999999988888888999999995  67999999999999999994 55555555 456789999999999


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCC-CEEEEee--CCCcEEEEeccCceEeecccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG-KYLAMGS--KDGDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~  286 (340)
                      ..     +++++.|+.|++||+++++.+..+..+...+.+++|+|++ .++++++  .|+.|++||+.+++.+..+.  +
T Consensus       230 ~~-----l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~  302 (401)
T 4aez_A          230 LQ-----LASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--A  302 (401)
T ss_dssp             SE-----EEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--C
T ss_pred             CE-----EEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--C
Confidence            87     7889999999999999999988888999999999999976 4555554  79999999999998887663  3


Q ss_pred             cccceeeEEEecCCeEEEE--EecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          287 LGTSIALVEFCPTQRVVLT--ASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       287 ~~~~i~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                       ...|.+++|+|++++|++  |+.||.|++|++...... .......|...|.++
T Consensus       303 -~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-~~~~~~~h~~~v~~~  355 (401)
T 4aez_A          303 -GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-KQVDIPAHDTRVLYS  355 (401)
T ss_dssp             -SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-EEEEEECCSSCCCEE
T ss_pred             -CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-eEEEecCCCCCEEEE
Confidence             468999999999999999  448999999999764321 122234566666554

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.6e-36  Score=251.66  Aligned_cols=253  Identities=14%  Similarity=0.109  Sum_probs=206.6

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--CCCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--SGDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~   80 (340)
                      +..+|+|++|+|+   ..++++|+      .++.|++|++.....    .......+.+|...|.+++|+|  ++++|++
T Consensus        10 H~~~v~~~~~~~~---~~~l~~~~------~dg~i~iw~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A           10 HDDLVHDVVYDFY---GRHVATCS------SDQHIKVFKLDKDTS----NWELSDSWRAHDSSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             CSSCEEEEEECSS---SSEEEEEE------TTSEEEEEEECSSSC----CEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred             cccceeEEEEcCC---CCEEEEee------CCCeEEEEECCCCCC----cceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence            5688999999994   45677665      566799999974332    2234567889999999999999  6999999


Q ss_pred             EecCCCEEEEEecCcee---------eeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCceeec
Q 019482           81 STTNGGCKLFEVYGGAT---------DINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILD  149 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~  149 (340)
                      ++.|+.|++||+..+..         ...+.       .|...|.+++|+|+  +++|++++.||.|++||+++++.+..
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-------DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSSCSEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             EcCCCeEEEEecCCCcccccccCcceeeeec-------ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence            99999999999987632         22221       37789999999999  99999999999999999988765443


Q ss_pred             cc-------------cCccceeEEEecCC---CCeEEEeeCCCeEEEEEccCCee--EEEeecCCCCceeeEEEccCC--
Q 019482          150 EP-------------KAHKSVLDMDFSLD---SEFLATTSTDGSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDG--  209 (340)
Q Consensus       150 ~~-------------~~~~~i~~~~~~~~---~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~--  209 (340)
                      +.             .+...+.+++|+|+   +.++++++.|+.+.+|+...++.  +..+. .+...|.+++|+|++  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSSC
T ss_pred             ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCCC
Confidence            32             45568999999997   89999999999998888877765  44444 456789999999998  


Q ss_pred             --CcceEEEEEecCCcceEEEEECCCC----------------------------------------------cEEeeee
Q 019482          210 --TKPFLFCTVQRGDKALLAVYDISTW----------------------------------------------NKIGHKR  241 (340)
Q Consensus       210 --~~~~~~~~~~~~~d~~i~i~d~~~~----------------------------------------------~~~~~~~  241 (340)
                        ..     +++++.|+.|++||++.+                                              +.+..+.
T Consensus       229 ~~~~-----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (351)
T 3f3f_A          229 WYQL-----IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD  303 (351)
T ss_dssp             SSEE-----EEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred             cceE-----EEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence              44     788999999999999874                                              4566677


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      .|...|++++|+|++++|++++.||.|++||+.+++....
T Consensus       304 ~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          304 DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence            8889999999999999999999999999999998765443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-38  Score=273.89  Aligned_cols=245  Identities=11%  Similarity=0.010  Sum_probs=191.9

Q ss_pred             CCCCeeEEEEcCCC---------CeEEE-------------------EecCCCEEEEEecCceeeeeeccccCCCCCCCC
Q 019482           62 SEGDPMTIAVNPSG---------DDFVC-------------------STTNGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (340)
Q Consensus        62 h~~~v~~~~~~~~~---------~~l~~-------------------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (340)
                      +.+.|.+++|+|++         ++||+                   ++.|++|+||++.+++........   ...|.+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~---l~~~~~  208 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQT---IVHSFG  208 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEE---EEECCC
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEE---EEecCC
Confidence            56788888888876         56665                   456788999999876532111000   002567


Q ss_pred             CeEEEEEecC------CCeEEEccCCCcEEEEeCCCCcee-----------eccccCccceeEEEecCCCCeEEEeeCCC
Q 019482          114 PQKCLSFSVD------GSRFAAGGVDGHLRIMHWPSLRII-----------LDEPKAHKSVLDMDFSLDSEFLATTSTDG  176 (340)
Q Consensus       114 ~v~~~~~~~~------~~~l~~~~~dg~i~~~d~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  176 (340)
                      .|.+++|+|+      +.+|++++.||+|++||+.+++..           ..+..|...|.+++|+|++ .|++|+.||
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence            8999999997      579999999999999999866421           2455677799999999864 899999999


Q ss_pred             eEEEEEccCCee-EEEeecCCCCceeeE--EEccCC-CcceEEEEEecCCcceEEEEECCCCcEEeeeeccC--CCeeEE
Q 019482          177 SARIWKTEDGVA-WTFLTRNSDEKIELC--RFSKDG-TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--KPASVL  250 (340)
Q Consensus       177 ~v~iwd~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~  250 (340)
                      +|++||+++++. ...+. .|...|.++  .|+|++ ..     +++++.|++|++||+++++.+..+..+.  ..+.++
T Consensus       288 tV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~-----laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v  361 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTV-----VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPV  361 (524)
T ss_dssp             EEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCE-----EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred             EEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeE-----EEEeccCCeEEEEECCCCCcccccccccccCcccce
Confidence            999999987643 33444 456789999  578887 54     7899999999999999887766666554  357899


Q ss_pred             EECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          251 SISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       251 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +|+|+++.+++++.|+.|++||++++..+..+. +| ...|++++|+|++++|++|+.||+|++|++.
T Consensus       362 ~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          362 VYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SR-ETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             EEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-EC-SSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             EeCCCcCeEEEeCCCCcEEEEECcccccceeee-cC-CCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            999999999999999999999999987766553 56 6799999999999999999999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.3e-36  Score=259.04  Aligned_cols=248  Identities=16%  Similarity=0.157  Sum_probs=204.2

Q ss_pred             CeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ....++++|+...++ +++.||.|+||++..........   .....|.+.|.+++|+| ++++|++|+.||.|++||+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~---~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV---PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC---CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC---ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            455688988776444 57889999999996653321111   11124889999999999 99999999999999999999


Q ss_pred             CC-------ceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcce
Q 019482          143 SL-------RIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       143 ~~-------~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~  213 (340)
                      ++       +.+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+. ..+...|.+++|+|++..  
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--  190 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL--  190 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC--
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE--
Confidence            87       4566677888899999999998 699999999999999999999988884 346678999999999997  


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeee-eccCCC-eeEEEECCCCCEEEEe---eCCCcEEEEeccCceE-eeccccccc
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHK-RLLRKP-ASVLSISLDGKYLAMG---SKDGDICVVDVKKMEI-NHWSKRLHL  287 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~-i~~~~~s~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~~~~~  287 (340)
                         +++++.|+.|++||+++++.+..+ ..|... +.++.|+|++++|++|   +.|+.|++||+++++. .......+ 
T Consensus       191 ---l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~-  266 (402)
T 2aq5_A          191 ---ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT-  266 (402)
T ss_dssp             ---EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC-
T ss_pred             ---EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC-
Confidence               788899999999999999988887 667655 8999999999999999   7899999999988664 22222233 


Q ss_pred             ccceeeEEEecCCeEEE-EEecCCcEEEEEecCCC
Q 019482          288 GTSIALVEFCPTQRVVL-TASKEWGAMITKLTVPA  321 (340)
Q Consensus       288 ~~~i~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~  321 (340)
                      ...+..++|+|++++|+ +++.||.|++|++....
T Consensus       267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            56899999999999886 45579999999997655

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-36  Score=259.99  Aligned_cols=262  Identities=9%  Similarity=0.026  Sum_probs=204.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      -..-|.+++|+|   ++.++|+++      .|++|+  +.  ..      +   ..+++|...|.+++|+|+|       
T Consensus        14 ~~~~v~sv~~Sp---DG~~iASas------~D~TV~--d~--~~------~---~~l~gh~~~v~~V~FsPdg-------   64 (588)
T 2j04_A           14 FEDWKNNLTWAR---DGTLYLTTF------PDISIG--QP--KY------A---KDINCNSKNLFHVKEFPLE-------   64 (588)
T ss_dssp             CSSSSCCEEECT---TSCEEEECS------SSEEEE--EE--CC------C---SCCSSBGGGTEEEEEECCC-------
T ss_pred             hhccEEEEEECC---CCCEEEEEc------CCceee--cc--cc------c---ceecCCCccEEEEEECCCC-------
Confidence            356689999999   667888776      455577  31  11      1   1236899999999999999       


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-----ce
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-----SV  157 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-----~i  157 (340)
                      .++.+.+|+.+...   .+      ...+...|.+++|||+|++||+++.||.|++||.++  .+..+. |+.     .+
T Consensus        65 ~~~~~~~~~~~~~~---~~------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv  132 (588)
T 2j04_A           65 FENKLDFELAQQNG---LL------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY  132 (588)
T ss_dssp             CCCTTTTSCCCSSC---SS------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred             CcceEEEEeCCCce---Ee------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence            45555555543221   11      113568899999999999999999999999999544  444444 443     59


Q ss_pred             eEEEecCCCCeEEEeeCCCeEEEEEccCCee-------EEEee---cCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          158 LDMDFSLDSEFLATTSTDGSARIWKTEDGVA-------WTFLT---RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                      .+++|+|||++|++|+.||+|++||++++..       +.++.   ..|...|.+++|+|+| .      ++++.|+.++
T Consensus       133 ~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-L------aass~D~tVr  205 (588)
T 2j04_A          133 HCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-L------VAALSNNSVF  205 (588)
T ss_dssp             EEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-E------EEEETTCCEE
T ss_pred             EEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-E------EEEeCCCeEE
Confidence            9999999999999999999999999998752       45553   3455789999999998 3      5567799999


Q ss_pred             EEECCCCcE---Eeee-eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE--ecCCe
Q 019482          228 VYDISTWNK---IGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF--CPTQR  301 (340)
Q Consensus       228 i~d~~~~~~---~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~  301 (340)
                      +||+..++.   ...+ ..|...|.+++|+  |+.|++++ ++.|++||+.+++..... .+| ...+.+++|  +||+.
T Consensus       206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-~gh-~~~V~~va~~~s~d~~  280 (588)
T 2j04_A          206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-TGS-LENFHIIPLNHEKEST  280 (588)
T ss_dssp             EECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE-CSC-CSCCCEEEETTCSSCE
T ss_pred             EEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE-cCC-CceEEEEEeeeCCCCC
Confidence            999988773   2345 3677889999999  68999987 699999999988874433 256 679999999  99999


Q ss_pred             EEEEEecCCcEEEEEec
Q 019482          302 VVLTASKEWGAMITKLT  318 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~~~  318 (340)
                      .|++++.||. ++|..+
T Consensus       281 ~La~a~edG~-klw~~d  296 (588)
T 2j04_A          281 ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEECSSCEE-EEEESS
T ss_pred             EEEEEcCCCC-EEEeec
Confidence            9999999999 999975

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.7e-35  Score=249.92  Aligned_cols=250  Identities=14%  Similarity=0.115  Sum_probs=190.8

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCC-----cccCCCceEEEEeCCCCCCcccCCe-eeEEEecCCCCeeEEEEcCCCCeEE
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSR-----ASSSPSVLEIFSFDPKTTSVYTSPL-VTYVFDESEGDPMTIAVNPSGDDFV   79 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~-----~~~~~~~i~i~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~   79 (340)
                      .|.|++|.+     .+++.|....     .+..++.+++|.++........... .......+...+.+++|+|||++++
T Consensus        75 ~v~s~~~~~-----~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la  149 (365)
T 4h5i_A           75 SPTAIDASK-----GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAA  149 (365)
T ss_dssp             CCCEEEEET-----TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE
T ss_pred             ceEEEEeCC-----CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEE
Confidence            455666554     3455554433     2446788999998755433211000 0111233456689999999999987


Q ss_pred             EE--ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec--cccCcc
Q 019482           80 CS--TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD--EPKAHK  155 (340)
Q Consensus        80 ~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~--~~~~~~  155 (340)
                      ++  +.|++|+|||+.+.+....+        .|...|.+++|+|||++|++++.+ .+.+|+..+++....  ...|..
T Consensus       150 ~as~~~d~~i~iwd~~~~~~~~~~--------~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T 4h5i_A          150 IASSKVPAIMRIIDPSDLTEKFEI--------ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNW  220 (365)
T ss_dssp             EEESCSSCEEEEEETTTTEEEEEE--------ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTE
T ss_pred             EEECCCCCEEEEeECCCCcEEEEe--------CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCC
Confidence            54  46899999999988876554        256789999999999999999855 566777676665432  334566


Q ss_pred             ceeEEEecCCCCeEEEeeCCC----eEEEEEccCCeeE----EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEE
Q 019482          156 SVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAW----TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLA  227 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~  227 (340)
                      .|.+++|+|+++++++++.|+    .+++|++......    ..+. .+...|++++|+|+|++     +++++.|+.|+
T Consensus       221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~-----lasgs~D~~V~  294 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDMKGEL-----AVLASNDNSIA  294 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECTTSCE-----EEEEETTSCEE
T ss_pred             CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECCCCCc-----eEEEcCCCEEE
Confidence            899999999999999999887    6889998876542    2333 45567999999999997     78999999999


Q ss_pred             EEECCCCcEEeee-eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          228 VYDISTWNKIGHK-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       228 i~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      +||+++++++..+ .+|...|++++|+|||++|++|+.|++|+|||+..
T Consensus       295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999988775 68999999999999999999999999999999964

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=9.2e-35  Score=251.43  Aligned_cols=285  Identities=13%  Similarity=0.122  Sum_probs=226.5

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      +..+.+++|+|   +..+++.++      .++.|.+|+...... ..  ......+.+|...|.+++|+|++.++++++.
T Consensus       122 ~~~~~~~~~s~---~~~~~~~~~------~~~~i~~~d~~~g~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~  189 (433)
T 3bws_A          122 GFQPKSVRFID---NTRLAIPLL------EDEGMDVLDINSGQT-VR--LSPPEKYKKKLGFVETISIPEHNELWVSQMQ  189 (433)
T ss_dssp             SSCBCCCEESS---SSEEEEEBT------TSSSEEEEETTTCCE-EE--ECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG
T ss_pred             CCCceEEEEeC---CCeEEEEeC------CCCeEEEEECCCCeE-ee--ecCcccccccCCceeEEEEcCCCEEEEEECC
Confidence            34566899998   335666554      445699998763211 00  0000134578999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      |+.|++||+.+++....+.       .|...+.+++|+|++++++ +++.|+.|++||+++++....+.. ...+.+++|
T Consensus       190 d~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~  261 (433)
T 3bws_A          190 ANAVHVFDLKTLAYKATVD-------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLL  261 (433)
T ss_dssp             GTEEEEEETTTCCEEEEEE-------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEE
T ss_pred             CCEEEEEECCCceEEEEEc-------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEE
Confidence            9999999998877655543       2567899999999999875 555799999999998887766544 456899999


Q ss_pred             cCCCCeEEEee--------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482          163 SLDSEFLATTS--------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (340)
Q Consensus       163 ~~~~~~l~~~~--------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  234 (340)
                      +|+++++++++        .|+.|++||+++++.+..+.  +...+..++|+|+++.+    +++++.++.|++||++++
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l----~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKI----YVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEE----EEEETTTTEEEEEETTTT
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEE----EEEecCCCEEEEEECCCC
Confidence            99999999888        48899999999998877664  23468899999999863    466688999999999998


Q ss_pred             cEEeeeeccCCCeeEEEECCCCCEEEEeeC---------------CCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSK---------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       235 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      +.+..+. +...+.+++|+|+|+++++++.               ||.|++||+.+++.+..+..   ...+.+++|+|+
T Consensus       336 ~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~d  411 (433)
T 3bws_A          336 KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPD  411 (433)
T ss_dssp             EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTT
T ss_pred             cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCC
Confidence            8776665 5677999999999999988876               57999999999988876643   357899999999


Q ss_pred             CeEEEEEec-CCcEEEEEec
Q 019482          300 QRVVLTASK-EWGAMITKLT  318 (340)
Q Consensus       300 ~~~l~~~~~-dg~i~iw~~~  318 (340)
                      |++|++++. |+.|++|+++
T Consensus       412 g~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          412 NRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             SCEEEEEETTTTEEEEEEET
T ss_pred             CCEEEEEECCCCeEEEEEec
Confidence            999988775 9999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-36  Score=252.57  Aligned_cols=269  Identities=12%  Similarity=0.033  Sum_probs=201.3

Q ss_pred             ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceee
Q 019482           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (340)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~   98 (340)
                      ..++++|+      .|+.|++|++...        .....+.  ...|.++.|+|+   +++++.|+.|++|+.......
T Consensus        48 ~~~l~sg~------~Dg~v~iwd~~~~--------~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           48 KWVCMCRC------EDGALHFTQLKDS--------KTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             EEEEEEEE------ETTEEEEEEESSS--------SCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred             CCEEEEEC------CCCcEEEEECCCC--------cEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence            45677666      5677999999732        2222233  456888899988   999999999999987643321


Q ss_pred             eeecccc---CCCCCCCCCeEEEEEec--CCCeEEEccCCCcEEEEeCCCCceeeccccC-ccceeEEEecCCCCeEEEe
Q 019482           99 INLLAKK---MPPLQDAGPQKCLSFSV--DGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKSVLDMDFSLDSEFLATT  172 (340)
Q Consensus        99 ~~~~~~~---~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~  172 (340)
                      .......   .....|..+|.+++|+|  +++++++++.||.|++||+++++.......+ ...+.+++|+|++++|++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence            1111100   01123567899999999  9999999999999999999998876555343 3479999999999999999


Q ss_pred             eCCCeEEEEEccCCeeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec---cCCCee
Q 019482          173 STDGSARIWKTEDGVAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL---LRKPAS  248 (340)
Q Consensus       173 ~~d~~v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~  248 (340)
                      +.|+.|++||+++++.+ ..+...|...|.+++|+|++..     +++++ ++.|++||+++++.+..+..   +...+.
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-----l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~  262 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-----MVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG  262 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-----EEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred             cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-----EEEEe-CCeEEEEEcCCCCcceeeccccccccccc
Confidence            99999999999999887 6676546689999999999986     66666 45999999999876544433   333343


Q ss_pred             --EEEECCCCCEEEEeeC-CCcEEEEeccCceEeecccccccccceeeEEEec---CCeEEEEEecCCcEEEEEec
Q 019482          249 --VLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP---TQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       249 --~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iw~~~  318 (340)
                        +++|+|+|++|++++. |+.+++|++.+.......      .++..++|.+   +.+.+++++.||.+.++-..
T Consensus       263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred             ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEec
Confidence              6999999999999988 999999999765432211      3677888888   88899999999999887643

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-35  Score=257.26  Aligned_cols=246  Identities=9%  Similarity=-0.053  Sum_probs=200.3

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCce---eeeeeccccC----------------------------------
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA---TDINLLAKKM----------------------------------  106 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~----------------------------------  106 (340)
                      .++.+++|+|+|++|+++ .++.|++||+.+++   ..........                                  
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478999999999966665 56789999998887   3322221000                                  


Q ss_pred             -------------CCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCC--CCceeeccc--cCccceeEEEecCCCCe
Q 019482          107 -------------PPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWP--SLRIILDEP--KAHKSVLDMDFSLDSEF  168 (340)
Q Consensus       107 -------------~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~--~~~~~~~~~--~~~~~i~~~~~~~~~~~  168 (340)
                                   ....|.+.|.+++|+|++++| ++++.||.|++||+.  +++....+.  .+...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                         001244579999999999996 899999999999999  777776665  44568999999999999


Q ss_pred             EEEeeCCCeEEEEEccCCeeEE----EeecCCCCceeeEEEccC---CCcceEEEEEecCCcceEEEEECCCCcEEee-e
Q 019482          169 LATTSTDGSARIWKTEDGVAWT----FLTRNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALLAVYDISTWNKIGH-K  240 (340)
Q Consensus       169 l~~~~~d~~v~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~  240 (340)
                      |++++.|+.+++|++.+++...    .+.. +...|.+++|+|+   ++.     +++++.|+.|++||+++++.+.. +
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~-----l~s~~~d~~i~vwd~~~~~~~~~~~  237 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQF-----IITSDRDEHIKISHYPQCFIVDKWL  237 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEE-----EEEEETTSCEEEEEESCTTCEEEEC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcE-----EEEEcCCCcEEEEECCCCceeeeee
Confidence            9999999999999998876543    4443 4568999999999   776     78889999999999999987766 5


Q ss_pred             eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc-----------------------ccccceeeEEEe
Q 019482          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-----------------------HLGTSIALVEFC  297 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~~~i~~~~~~  297 (340)
                      ..|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+...                       .....|.+++|+
T Consensus       238 ~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~  316 (450)
T 2vdu_B          238 FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS  316 (450)
T ss_dssp             CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred             cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence            5788999999999 9999999999999999999998877655321                       113468999999


Q ss_pred             cCCeEEEEEe-cCCcEEEEEe
Q 019482          298 PTQRVVLTAS-KEWGAMITKL  317 (340)
Q Consensus       298 ~~~~~l~~~~-~dg~i~iw~~  317 (340)
                      |++++|++++ .|+.|+||++
T Consensus       317 ~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          317 KNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             SSSSEEEEEETTCSEEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEe
Confidence            9999999998 8999999999

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-34  Score=243.83  Aligned_cols=280  Identities=12%  Similarity=0.071  Sum_probs=210.8

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE-EEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~   81 (340)
                      +..+|.|++|+|   ++.++++|+       ++.+++|+.++        .......  +...+..+++.++++.+ +++
T Consensus        18 h~~~V~~v~fs~---dg~~la~g~-------~~~~~iw~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   77 (355)
T 3vu4_A           18 VSNPVTDYEFNQ---DQSCLILST-------LKSFEIYNVHP--------VAHIMSQ--EMRHLSKVRMLHRTNYVAFVT   77 (355)
T ss_dssp             -CCCCCEEEECT---TSSEEEEEC-------SSEEEEEEETT--------EEEEEEE--ECSCCCEEEECTTSSEEEEEC
T ss_pred             CCCceEEEEECC---CCCEEEEEc-------CCEEEEEecCC--------cceeeee--ecCCeEEEEEcCCCCEEEEEE
Confidence            457899999999   456777554       33478999762        2222222  22358889999988877 467


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC-ceeeccccCccceeEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL-RIILDEPKAHKSVLDM  160 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~i~~~  160 (340)
                      +.|+.|++||..+++....+.        +...|.+++|+++.  ++++ .|+.|++||+.++ +.+..+..   +...+
T Consensus        78 ~~d~~v~iWd~~~~~~~~~~~--------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~  143 (355)
T 3vu4_A           78 GVKEVVHIWDDVKKQDVSRIK--------VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVC  143 (355)
T ss_dssp             SSTTEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEE
T ss_pred             CCccEEEEEECCCCcEEEEEE--------CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceE
Confidence            778899999999888765542        45689999998864  4433 3789999999987 55555443   44455


Q ss_pred             EecCCCCeEEE--eeCCCeEEEEEccCCe---------------e-EEEeecCCCCceeeEEEccCCCcceEEEEEecCC
Q 019482          161 DFSLDSEFLAT--TSTDGSARIWKTEDGV---------------A-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (340)
Q Consensus       161 ~~~~~~~~l~~--~~~d~~v~iwd~~~~~---------------~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (340)
                      ++++  .++++  |+.||.|++||+++++               + +..+. .|...|.+++|+|++++     +++++.
T Consensus       144 ~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~-----l~s~s~  215 (355)
T 3vu4_A          144 EFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDM-----VATCSQ  215 (355)
T ss_dssp             EEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSE-----EEEEET
T ss_pred             EEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCE-----EEEEeC
Confidence            6666  56665  6889999999998765               1 45555 45678999999999997     899999


Q ss_pred             cce-EEEEECCCCcEEeeee-c-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec--c---------------
Q 019482          223 KAL-LAVYDISTWNKIGHKR-L-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW--S---------------  282 (340)
Q Consensus       223 d~~-i~i~d~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~---------------  282 (340)
                      |++ |++||+++++.+..+. + |...|.+++|+|++++|++++.|+.|++||++.......  +               
T Consensus       216 d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (355)
T 3vu4_A          216 DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL  295 (355)
T ss_dssp             TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred             CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence            998 9999999999998888 4 889999999999999999999999999999976432110  0               


Q ss_pred             -----cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCC
Q 019482          283 -----KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKG  325 (340)
Q Consensus       283 -----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  325 (340)
                           .... ..+...++|++|++.|++++.||.+++|++......+.
T Consensus       296 ~~~~~~~~~-~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~~  342 (355)
T 3vu4_A          296 CNFKLSVDK-HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMER  342 (355)
T ss_dssp             EEEECCCCT-TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTTE
T ss_pred             eEEEeccCC-CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCce
Confidence                 0001 12347799999999999999999999999987665433

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.6e-35  Score=245.48  Aligned_cols=239  Identities=12%  Similarity=0.077  Sum_probs=190.5

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcE
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHL  136 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i  136 (340)
                      .++.|...|++++|+|+|++|++|+.++ +++|++...+.....         +...+..+++.++++.+ ++++.|++|
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---------EMRHLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---------ECSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---------ecCCeEEEEEcCCCCEEEEEECCccEE
Confidence            4578999999999999999999998887 899999876654332         11247788898888877 567888999


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-eeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-VAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      ++||+.+++.+..+. +...|.+++|+++.  ++++ .|+.|++||++++ +.+..+..    +...+++++  ..  + 
T Consensus        84 ~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~--l-  150 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GL--L-  150 (355)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TE--E-
T ss_pred             EEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cE--E-
Confidence            999999998887664 66789999999764  4444 3789999999988 66665543    345566777  22  1 


Q ss_pred             EEEe-cCCcceEEEEECCCCc---------------E-EeeeeccCCCeeEEEECCCCCEEEEeeCCCc-EEEEeccCce
Q 019482          216 CTVQ-RGDKALLAVYDISTWN---------------K-IGHKRLLRKPASVLSISLDGKYLAMGSKDGD-ICVVDVKKME  277 (340)
Q Consensus       216 ~~~~-~~~d~~i~i~d~~~~~---------------~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~  277 (340)
                       .+. ++.++.|++||+++++               + +..+..|...|.+++|+|+|++|++++.|+. |++||+++++
T Consensus       151 -a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~  229 (355)
T 3vu4_A          151 -VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV  229 (355)
T ss_dssp             -EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred             -EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence             233 7899999999999865               2 5678899999999999999999999999998 9999999999


Q ss_pred             Eeeccccc-ccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          278 INHWSKRL-HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       278 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .+..+..+ | ...|.+++|+|++++|++++.|+.|++|++..+.
T Consensus       230 ~~~~~~~g~h-~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          230 LVREFRRGLD-RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEEECTTC-CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEEEEcCCC-CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            98887644 5 6799999999999999999999999999997654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-35  Score=248.65  Aligned_cols=233  Identities=11%  Similarity=0.101  Sum_probs=189.3

Q ss_pred             EEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC-------
Q 019482           70 AVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-------  142 (340)
Q Consensus        70 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-------  142 (340)
                      .+.+++.+|++|+.||.|++||+.+++....+.         ...|.++.|+|+   +++++.|++|++|+..       
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~  110 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---------TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD  110 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---------EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---------cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee
Confidence            345678899999999999999999887665553         245667788887   9999999999999765       


Q ss_pred             --CCceeeccc-cCccceeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          143 --SLRIILDEP-KAHKSVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       143 --~~~~~~~~~-~~~~~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                        +++.+.... .|...|.+++|+|  +++++++++.|++|++||+++++.......++...+.+++|+|++..     +
T Consensus       111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~-----l  185 (343)
T 3lrv_A          111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL-----L  185 (343)
T ss_dssp             TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE-----E
T ss_pred             cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE-----E
Confidence              444333333 4456899999999  99999999999999999999999877665566667999999999997     7


Q ss_pred             EecCCcceEEEEECCCCcEE-eeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc--ccccccee-
Q 019482          218 VQRGDKALLAVYDISTWNKI-GHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--LHLGTSIA-  292 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~i~-  292 (340)
                      ++++.|+.|++||+++++.+ ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++++....+..  .| ..++. 
T Consensus       186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~  263 (343)
T 3lrv_A          186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP-EFKTGT  263 (343)
T ss_dssp             EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC------CC
T ss_pred             EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc-cccccc
Confidence            88899999999999999877 67777 899999999999999999999 45999999998876544432  12 23344 


Q ss_pred             -eEEEecCCeEEEEEec-CCcEEEEEecCCC
Q 019482          293 -LVEFCPTQRVVLTASK-EWGAMITKLTVPA  321 (340)
Q Consensus       293 -~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~  321 (340)
                       +++|+|++++|++++. |+.++||++....
T Consensus       264 ~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence             6999999999999998 9999999996543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=270.94  Aligned_cols=247  Identities=11%  Similarity=0.119  Sum_probs=202.4

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCC--CCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPS--GDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~   80 (340)
                      +.++|+|++|+|+   +.++++|+      .++.|++|++...      .......+.+|.+.|++++|+|+  +++|++
T Consensus         8 H~~~V~~l~~s~d---g~~latg~------~dg~I~vwd~~~~------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A            8 HNELIHDAVLDYY---GKRLATCS------SDKTIKIFEVEGE------THKLIDTLTGHEGPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             CCCCEEEECCCSS---SCCEEEEE------TTTEEEEEEEETT------EEEEEEEECCCSSCEEEEEECCTTSCSEEEE
T ss_pred             CcceeEEEEECCC---CCeEEEEE------CCCcEEEEecCCC------CCccceeccCCcCceEEEEecCCCCCCEEEE
Confidence            4689999999995   34566665      5667999998632      23445678899999999999988  999999


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCc--eeeccccCccc
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKS  156 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~  156 (340)
                      ++.||.|++||+.+++.......     ..|...|.+++|+|+  ++++++|+.||.|++||+.++.  .......|...
T Consensus        73 ~s~Dg~I~vwd~~~~~~~~~~~~-----~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~  147 (753)
T 3jro_A           73 CSYDGKVLIWKEENGRWSQIAVH-----AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  147 (753)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEE-----CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred             EeCCCeEEEEECCCCcccccccc-----cCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc
Confidence            99999999999998762221111     137789999999999  9999999999999999998773  33445567789


Q ss_pred             eeEEEecC-------------CCCeEEEeeCCCeEEEEEccCC----eeEEEeecCCCCceeeEEEccC---CCcceEEE
Q 019482          157 VLDMDFSL-------------DSEFLATTSTDGSARIWKTEDG----VAWTFLTRNSDEKIELCRFSKD---GTKPFLFC  216 (340)
Q Consensus       157 i~~~~~~~-------------~~~~l~~~~~d~~v~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~  216 (340)
                      |.+++|+|             +++++++|+.||.|++||++++    .....+. .+...|.+++|+|+   +..     
T Consensus       148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~-----  221 (753)
T 3jro_A          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSY-----  221 (753)
T ss_dssp             EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEE-----
T ss_pred             eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCE-----
Confidence            99999999             5899999999999999999887    3444444 45678999999999   675     


Q ss_pred             EEecCCcceEEEEECCCCc-----EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          217 TVQRGDKALLAVYDISTWN-----KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      +++++.|+.|++||+++++     .......+...+++++|+|+|+++++++.||.|++||+.+
T Consensus       222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            7889999999999999864     3333445778899999999999999999999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.1e-34  Score=251.16  Aligned_cols=254  Identities=15%  Similarity=0.206  Sum_probs=214.4

Q ss_pred             ecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      .+|...|.++++  ++++|++|+.||.|++||+.+++....+.       .|...|.+++|  ++++|++|+.||.|++|
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~--~~~~l~sg~~dg~i~vw  198 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT-------GHTGSVLCLQY--DERVIITGSSDSTVRVW  198 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEEC-------CCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEc-------CCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence            456677988887  78999999999999999999887665553       27789999998  78899999999999999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE--EeecCCCCceeeEEEccCCCcceEEEE
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      |+.+++.+..+..|...|.+++|+  +..+++++.|+.|++||+++++...  .....+...+.+++|  +++.     +
T Consensus       199 d~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~-----l  269 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKY-----I  269 (435)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTE-----E
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCE-----E
Confidence            999999998888888899999997  4589999999999999999877652  233355678999999  5555     7


Q ss_pred             EecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  297 (340)
                      ++++.|+.|++||+++++.+..+..|...+.++.+  +++++++|+.||.|++||+++++.+..+. .| ...|.+++| 
T Consensus       270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h-~~~v~~~~~-  344 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE-GH-EELVRCIRF-  344 (435)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC-CC-SSCEEEEEC-
T ss_pred             EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe-CC-cCcEEEEEe-
Confidence            88899999999999999999999999999999998  56899999999999999999998887764 56 578999998 


Q ss_pred             cCCeEEEEEecCCcEEEEEecCCCCCC------CCccccccccccccC
Q 019482          298 PTQRVVLTASKEWGAMITKLTVPADWK------GLSLPLLHSHSQNSV  339 (340)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~~~~~~h~~~v~~v  339 (340)
                       ++.+|++|+.||.|++|++.......      .......|...|.++
T Consensus       345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  391 (435)
T 1p22_A          345 -DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  391 (435)
T ss_dssp             -CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             -cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence             78899999999999999997543211      234456787777765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.9e-35  Score=254.19  Aligned_cols=261  Identities=13%  Similarity=0.129  Sum_probs=206.4

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc--cCCeeeEEEecCCCCeeEEEEcCCCC-eEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY--TSPLVTYVFDESEGDPMTIAVNPSGD-DFV   79 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~   79 (340)
                      +.++|++++|+|..  ..++++|+      .++.|.+|++........  ........+.+|...|.+++|+|++. +|+
T Consensus       127 h~~~v~~l~~~p~~--~~~lat~~------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          127 HEGEVNRARYMPQN--ACVIATKT------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             ESSCCSEEEEETTE--EEEEEEEC------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred             CCCcEEEEEECCCC--CcEEEEEC------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence            45789999999942  35777666      456699999975322111  01334567889999999999999998 999


Q ss_pred             EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCC---ceeeccccCcc
Q 019482           80 CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSL---RIILDEPKAHK  155 (340)
Q Consensus        80 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~  155 (340)
                      +++.||.|++|++..................|...|.+++|+| ++.+|++++.||.|++||++++   +....+..|..
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  278 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA  278 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence            9999999999999874321111110011124778999999999 6789999999999999999977   45556667778


Q ss_pred             ceeEEEecCCCC-eEEEeeCCCeEEEEEccC-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          156 SVLDMDFSLDSE-FLATTSTDGSARIWKTED-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       156 ~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      .|.+++|+|+++ ++++|+.|+.|++||+++ .+++..+.. +...|.+++|+|+++.+    +++++.|+.|++||++.
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~~----l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETI----LASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSSCTTE----EEEEETTSCCEEEEGGG
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCCCCCE----EEEEeCCCcEEEEeCCC
Confidence            999999999887 688999999999999998 456666664 45689999999999753    67888999999999987


Q ss_pred             --------------CcEEeeeeccCCCeeEEEECCCCC-EEEEeeCCCcEEEEeccCc
Q 019482          234 --------------WNKIGHKRLLRKPASVLSISLDGK-YLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       234 --------------~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~  276 (340)
                                    .+.+.....|...|.+++|+|+++ +|++++.||.|++|++...
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                          356666778888999999999998 8999999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.1e-36  Score=255.47  Aligned_cols=288  Identities=11%  Similarity=0.074  Sum_probs=220.1

Q ss_pred             CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccc------cCC
Q 019482           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAK------KMP  107 (340)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------~~~  107 (340)
                      ..+++|.++        .......+.+|.+.|++++|+| ++++|++++.||.|++||+.+..........      ...
T Consensus        23 ~~~~v~~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~   94 (408)
T 4a11_B           23 STRRVLGLE--------LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH   94 (408)
T ss_dssp             HHHHHHTEE--------ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred             Ccceeeccc--------cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccc
Confidence            345666655        2233456778999999999999 9999999999999999999877654333211      011


Q ss_pred             CCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCC---CCeEEEeeCCCeEEEEEc
Q 019482          108 PLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTDGSARIWKT  183 (340)
Q Consensus       108 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~v~iwd~  183 (340)
                      ...|...|.+++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|+|.   +.++++++.|+.|++||+
T Consensus        95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            123788999999999 77899999999999999999988776554 6678899999884   448999999999999999


Q ss_pred             cCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc-EEeee---------------eccCCCe
Q 019482          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN-KIGHK---------------RLLRKPA  247 (340)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~---------------~~~~~~i  247 (340)
                      ++++.+..+.. +...|.+++|+|+++.+    +++++.|+.|++||++++. .+..+               ..+...|
T Consensus       174 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l----l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          174 KSGSCSHILQG-HRQEILAVSWSPRYDYI----LATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             SSSCCCEEECC-CCSCEEEEEECSSCTTE----EEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             CCcceeeeecC-CCCcEEEEEECCCCCcE----EEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence            99988888864 45689999999999853    5788899999999998765 22222               4577889


Q ss_pred             eEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc---ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCC
Q 019482          248 SVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL---GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWK  324 (340)
Q Consensus       248 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~  324 (340)
                      .+++|+|++++|++++.||.|++||+.+++..........   ...+........+..+++++.|+.|++|++....   
T Consensus       249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---  325 (408)
T 4a11_B          249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE---  325 (408)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC---
T ss_pred             eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc---
Confidence            9999999999999999999999999998876544321110   1122222223345667778889999999996544   


Q ss_pred             CCccccccccccccC
Q 019482          325 GLSLPLLHSHSQNSV  339 (340)
Q Consensus       325 ~~~~~~~h~~~v~~v  339 (340)
                      .......|...|.++
T Consensus       326 ~~~~~~~~~~~v~~~  340 (408)
T 4a11_B          326 QITMLKGHYKTVDCC  340 (408)
T ss_dssp             EEEEECCCSSCEEEE
T ss_pred             ceeeeccCCCeEEEE
Confidence            345556677777654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.3e-34  Score=232.62  Aligned_cols=269  Identities=13%  Similarity=0.079  Sum_probs=184.0

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-CCCE-EEEEec--Cc--eeeeeeccccC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGC-KLFEVY--GG--ATDINLLAKKM  106 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i-~iw~~~--~~--~~~~~~~~~~~  106 (340)
                      ....+.+|+.....     .-...++++.|+.+|..+.+.||-.-|++..- +=.+ .++.+.  ..  .....+...  
T Consensus        61 ~~~~v~lw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~--  133 (356)
T 2w18_A           61 CEDVVSLWKALDAW-----QWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKS--  133 (356)
T ss_dssp             ESSEEEEEEESSSS-----BEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEE--
T ss_pred             ccceEEEcccCCCc-----cceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeC--
Confidence            34459999987321     23567889999999999999997654443221 1111 111111  00  000000000  


Q ss_pred             CCCCCCCCeEEEEEecCCCeEEEcc--CCCcEEEEeC-CCCceeeccccCccceeEEEecC---CCCeEEEeeCCCeEEE
Q 019482          107 PPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHW-PSLRIILDEPKAHKSVLDMDFSL---DSEFLATTSTDGSARI  180 (340)
Q Consensus       107 ~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~v~i  180 (340)
                         .+...|..+   ++++++.+++  .|+.|++|++ ++++.+.....|...+..++|+|   ++.+|++++.|++|+|
T Consensus       134 ---g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI  207 (356)
T 2w18_A          134 ---GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVI  207 (356)
T ss_dssp             ---EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEE
T ss_pred             ---CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEE
Confidence               022223333   4666666633  5999999999 55777777777877888999998   7799999999999999


Q ss_pred             EEccCCeeEEEeecCCC--CceeeEEEccCCCcceEE-------EEEecCCcceEEEEECCCCcEEeeee-----ccCCC
Q 019482          181 WKTEDGVAWTFLTRNSD--EKIELCRFSKDGTKPFLF-------CTVQRGDKALLAVYDISTWNKIGHKR-----LLRKP  246 (340)
Q Consensus       181 wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~-------~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~  246 (340)
                      ||+++++++.++..++.  ..+.+++|+|+|..+...       .+++++.|++|++||..+++.+..+.     +|...
T Consensus       208 WDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~  287 (356)
T 2w18_A          208 WNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR  287 (356)
T ss_dssp             EETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC
T ss_pred             EECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce
Confidence            99999999999975432  357778999999753211       13678899999999999998775542     33333


Q ss_pred             eeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          247 ASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       247 i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      +.+  .+.++.++++++.|++|+|||+.+++.+..+. +|....+..++|+|||++|++|+.|++|+||++
T Consensus       288 ~ls--g~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          288 FLE--GDVKDHCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEE--EEEETTEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eEc--cccCCCEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            333  33347889999999999999999999988774 553334556899999999999999999999996

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=245.37  Aligned_cols=265  Identities=15%  Similarity=0.168  Sum_probs=208.5

Q ss_pred             eeEEEecCCCCeeEEEEcCC---CCeEEEEecCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482           55 VTYVFDESEGDPMTIAVNPS---GDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (340)
                      ....+.+|.+.|++++|+|+   |++|++++.||.|++||+.+ +........      .|...|.+++|+|++++|+++
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~  104 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ------MHTGPVLDVCWSDDGSKVFTA  104 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE------ECSSCEEEEEECTTSSEEEEE
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec------cccCCEEEEEECcCCCEEEEE
Confidence            34567899999999999999   69999999999999999987 433322221      277899999999999999999


Q ss_pred             cCCCcEEEEeCCCCceeeccccCccceeEEEe--cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482          131 GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF--SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (340)
Q Consensus       131 ~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (340)
                      +.||.|++||+++++... ...|...|.+++|  +|++++|++++.|+.|++||+++++.+..+..+  ..+.++.+.++
T Consensus       105 ~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~  181 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--ERCYCADVIYP  181 (368)
T ss_dssp             ETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--SCEEEEEEETT
T ss_pred             cCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--CCceEEEecCC
Confidence            999999999999887665 5678889999999  889999999999999999999999988888744  35677777654


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEeeee--ccCCCeeEEEECCCCCE----EEEeeCCCcEEEEeccCce---Ee
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISLDGKY----LAMGSKDGDICVVDVKKME---IN  279 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~----l~~~~~dg~i~i~d~~~~~---~~  279 (340)
                        .     ++.++.++.+.+||++.........  .......++.+.++...    +++++.||.|++||++...   ..
T Consensus       182 --~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~  254 (368)
T 3mmy_A          182 --M-----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDN  254 (368)
T ss_dssp             --E-----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHS
T ss_pred             --e-----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccc
Confidence              3     5677789999999998765433222  23355667777665554    9999999999999998763   22


Q ss_pred             ecccccccc-----------cceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          280 HWSKRLHLG-----------TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       280 ~~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      ..+ ..|..           .+|.+++|+|++++|++++.||.|++|++....   .......|...|.++
T Consensus       255 ~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~  321 (368)
T 3mmy_A          255 FTF-KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART---KLKTSEQLDQPISAC  321 (368)
T ss_dssp             EEE-ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE---EEEECCCCSSCEEEE
T ss_pred             eee-eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc---EEEEecCCCCCceEE
Confidence            222 23311           169999999999999999999999999997443   344555677666654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6e-34  Score=245.29  Aligned_cols=249  Identities=15%  Similarity=0.192  Sum_probs=204.8

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +...|+|++|+|   ++.++++|+      .++.|++|++.        .......+.+|...+.+++++  +..|++++
T Consensus       146 ~~~~V~sv~fsp---dg~~lasgs------~Dg~v~iWd~~--------~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs  206 (420)
T 4gga_A          146 PGEYISSVAWIK---EGNYLAVGT------SSAEVQLWDVQ--------QQKRLRNMTSHSARVGSLSWN--SYILSSGS  206 (420)
T ss_dssp             TTCCEEEEEECT---TSSEEEEEE------TTSCEEEEETT--------TTEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred             CCCcEEEEEECC---CCCEEEEEE------CCCeEEEEEcC--------CCcEEEEEeCCCCceEEEeeC--CCEEEEEe
Confidence            356799999999   456777776      56669999987        555667789999999998874  67999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce----eeccccCcccee
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----ILDEPKAHKSVL  158 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~i~  158 (340)
                      .|+.+++||............      .|...+..+.|+|+++++++++.|+.+++|+..+++.    +.....+...|.
T Consensus       207 ~d~~i~~~d~~~~~~~~~~~~------~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~  280 (420)
T 4gga_A          207 RSGHIHHHDVRVAEHHVATLS------GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK  280 (420)
T ss_dssp             TTSEEEEEETTSSSCEEEEEE------CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE
T ss_pred             CCCceeEeeecccceeeEEec------ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCcee
Confidence            999999999876544332222      3778999999999999999999999999999987653    334556677899


Q ss_pred             EEEecCCCC-eEEE--eeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          159 DMDFSLDSE-FLAT--TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       159 ~~~~~~~~~-~l~~--~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      +++|+|++. .+++  |+.|++|++||++++++...+..+  ..+.++.|+|++..++   ...+..|+.|++||+++++
T Consensus       281 ~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv---~~sg~~d~~I~iwd~~~~~  355 (420)
T 4gga_A          281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELI---SGHGFAQNQLVIWKYPTMA  355 (420)
T ss_dssp             EEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS--SCEEEEEEETTTTEEE---EEECTTTCCEEEEETTTCC
T ss_pred             eeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc--cceeeeeecCCCCeEE---EEEecCCCEEEEEECCCCc
Confidence            999999654 4554  458999999999999998888743  4699999999998731   2345579999999999999


Q ss_pred             EEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          236 KIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       236 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      ++..+.+|...|++++|+|+|++|++|+.|++|++||+....+.+.
T Consensus       356 ~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence            9999999999999999999999999999999999999987655443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1e-32  Score=235.49  Aligned_cols=259  Identities=15%  Similarity=0.163  Sum_probs=211.7

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE-EEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF-VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      .++.|++|+.+        .......+.+|. .+.+++|+|+|+++ ++++.|+.|++||+.+++....+.        +
T Consensus        10 ~d~~v~v~d~~--------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~--------~   72 (391)
T 1l0q_A           10 ESDNISVIDVT--------SNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP--------A   72 (391)
T ss_dssp             TTTEEEEEETT--------TTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE--------C
T ss_pred             CCCEEEEEECC--------CCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE--------C
Confidence            56679999986        444555666664 58999999999977 567789999999999887765543        2


Q ss_pred             CCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeE
Q 019482          112 AGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~  189 (340)
                      ...+.+++|+|++++|+ +++.++.|++||+.+++....+. ++..+.+++|+|+++.+ ++++.|+.|++||+++++.+
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            34899999999999775 55567999999999988776554 45578999999999977 68888999999999999988


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee---CCC
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDG  266 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg  266 (340)
                      ..+..+  ..+..++|+|+++.+    ++++..++.|++||+++++.+..+. +...+.+++|+|+++++++++   .++
T Consensus       152 ~~~~~~--~~~~~~~~~~dg~~l----~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~  224 (391)
T 1l0q_A          152 NTVSVG--RSPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFN  224 (391)
T ss_dssp             EEEECC--SSEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             EEEecC--CCcceEEECCCCCEE----EEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCC
Confidence            877643  357999999999862    3567889999999999988776655 355789999999999999988   689


Q ss_pred             cEEEEeccCceEeecccccccccceeeEEEecCCeEE-EEEecCCcEEEEEecC
Q 019482          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV-LTASKEWGAMITKLTV  319 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iw~~~~  319 (340)
                      .|++||+.+++.+..+.. +  ..+.+++|+|++++| ++++.|+.+++|++..
T Consensus       225 ~v~~~d~~~~~~~~~~~~-~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          225 TVSMIDTGTNKITARIPV-G--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEEEEETTTTEEEEEEEC-C--SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEECCCCeEEEEEec-C--CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            999999999988776643 3  357899999999877 6778899999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-34  Score=245.39  Aligned_cols=240  Identities=9%  Similarity=-0.024  Sum_probs=184.8

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      -...|.+++|+|||+++|+++.|++|+  |....+.   +       ..|...|.+++|+|+|       .++.+.+|+.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l-------~gh~~~v~~V~FsPdg-------~~~~~~~~~~   74 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---I-------NCNSKNLFHVKEFPLE-------FENKLDFELA   74 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---C-------SSBGGGTEEEEEECCC-------CCCTTTTSCC
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccce---e-------cCCCccEEEEEECCCC-------CcceEEEEeC
Confidence            456799999999999999999999999  6444322   1       1488999999999998       4666666554


Q ss_pred             CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCcceEEEE
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~  217 (340)
                      +.. ....+ .+...|.+++|+|+|++||+++.||.|++||.+.  ++..+. ++.    ..+.+++|||||+.     +
T Consensus        75 ~~~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~-----L  144 (588)
T 2j04_A           75 QQN-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESS-----I  144 (588)
T ss_dssp             CSS-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSC-----E
T ss_pred             CCc-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCE-----E
Confidence            322 23222 4467899999999999999999999999999543  555554 332    25999999999998     8


Q ss_pred             EecCCcceEEEEECCCCcE-------Eeee----eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe---eccc
Q 019482          218 VQRGDKALLAVYDISTWNK-------IGHK----RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWSK  283 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~-------~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~  283 (340)
                      ++++.|++|++||+.++..       +..+    .+|...|.+++|+|||  +++++.|+.|++||+.+++..   +.+.
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            9999999999999998752       4555    4566799999999999  888889999999999887732   2333


Q ss_pred             ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      ..| ...|.+++|+  |+.||+++ ++.|++|++....   .......|...+++|
T Consensus       223 ~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~---~~~~~~gh~~~V~~v  271 (588)
T 2j04_A          223 NAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYS---ISSLKTGSLENFHII  271 (588)
T ss_dssp             CCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTE---EEEEECSCCSCCCEE
T ss_pred             ccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCe---EEEEEcCCCceEEEE
Confidence            345 5789999999  68899887 6999999986433   212333677766654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.7e-32  Score=225.32  Aligned_cols=255  Identities=11%  Similarity=0.098  Sum_probs=205.4

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  145 (340)
                      .++|+||+++ .||+| .|++|+|||+.+++....+...     .|...|.+++|+|++++|++|+.||+|++||+++++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~-----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQME-----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECC-----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEec-----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            5789999876 66665 5899999999998876555322     377889999999999999999999999999999999


Q ss_pred             eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      .+..+..|...+.++.+  ++..+++++.++.+++|+.............+...+..+.++++++.     +++++.|+.
T Consensus       101 ~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~s~~~d~~  173 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-----LASGGNDNL  173 (318)
T ss_dssp             EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE-----EEEEETTSC
T ss_pred             eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE-----EEEEecCcc
Confidence            99888888777766554  57899999999999999998765544444456678999999999997     788999999


Q ss_pred             EEEEECCCCcE----EeeeeccCCCeeEEEECCCCCEE---EEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          226 LAVYDISTWNK----IGHKRLLRKPASVLSISLDGKYL---AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       226 i~i~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      |++||+++++.    ......+...+..+.++|++..+   ++++.++.|++||...........  + ...+..+.|+|
T Consensus       174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~-~~~v~~~~~~~  250 (318)
T 4ggc_A          174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--A-HSQVCSILWSP  250 (318)
T ss_dssp             EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE--C-SSCEEEEEEET
T ss_pred             eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc--c-eeeeeeeeecc
Confidence            99999998753    33445567789999999976533   456788999999999887766543  2 45799999999


Q ss_pred             CCeEEEEEe--cCCcEEEEEecCCCCCCCCccccccccccccCC
Q 019482          299 TQRVVLTAS--KEWGAMITKLTVPADWKGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       299 ~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~vs  340 (340)
                      +++.+++++  .|+.|+||++....   .+.....|.+.|++|+
T Consensus       251 ~~~~~~~~sg~~d~~i~iwd~~~~~---~~~~l~gH~~~V~~l~  291 (318)
T 4ggc_A          251 HYKELISGHGFAQNQLVIWKYPTMA---KVAELKGHTSRVLSLT  291 (318)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCC---EEEEECCCSSCEEEEE
T ss_pred             cccceEEEEEcCCCEEEEEECCCCc---EEEEEcCCCCCEEEEE
Confidence            998877654  79999999986544   4566678988887763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.4e-31  Score=228.33  Aligned_cols=297  Identities=9%  Similarity=0.018  Sum_probs=222.2

Q ss_pred             ceeEEee---eeecCCCccEEEEcCCCC------cccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC
Q 019482            5 GTVTCGS---WIKRPENVNLVVLGKSSR------ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG   75 (340)
Q Consensus         5 ~~v~~~~---w~~~~~~~~~~~~g~~~~------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   75 (340)
                      ..++.++   |+|+.. ..+++......      .+..++.+.+|.+++....+    .....+..+ ..+.+++|+|++
T Consensus        61 ~g~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~-~~~~~~~~s~~~  134 (433)
T 3bws_A           61 IALVEMAIPVYKDEKE-IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITH----RFISRFKTG-FQPKSVRFIDNT  134 (433)
T ss_dssp             EEEEEEEEECCCTTCC-EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSE----EEEEEEECS-SCBCCCEESSSS
T ss_pred             CccEEEEEeeccCCCc-EEEEEEccccCcceeeecccCCCceEEEEECCCCCcc----eEEEEEcCC-CCceEEEEeCCC
Confidence            4566777   887533 22222222111      12345556888887543221    222334444 457799999977


Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCcc
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK  155 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~  155 (340)
                      .++++++.++.|++||+.+++.........  ...|...|.+++|+|+++++++++.|+.|++||+++++....+..+..
T Consensus       135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~  212 (433)
T 3bws_A          135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEK--YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK  212 (433)
T ss_dssp             EEEEEBTTSSSEEEEETTTCCEEEECCCHH--HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred             eEEEEeCCCCeEEEEECCCCeEeeecCccc--ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence            788888888999999999877654221100  113678999999999999999999999999999999888887777777


Q ss_pred             ceeEEEecCCCCeEE-EeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC--------CcceE
Q 019482          156 SVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG--------DKALL  226 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~d~~i  226 (340)
                      .+.+++|+|+++.++ +++.|+.|++||+++++.+..+..  ...+.+++|+|+++.     +++++        .|+.|
T Consensus       213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~-----l~~~~~~~~~~~~~dg~i  285 (433)
T 3bws_A          213 WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKE-----LYIAQFSASNQESGGGRL  285 (433)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSE-----EEEEEEESCTTCSCCEEE
T ss_pred             CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCE-----EEEEECCCCccccCCCeE
Confidence            899999999999875 555799999999999988877764  345999999999986     33333        58899


Q ss_pred             EEEECCCCcEEeeeeccCCCeeEEEECCCCCEE-EEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEE
Q 019482          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLT  305 (340)
Q Consensus       227 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  305 (340)
                      ++||+++++.+... .+...+..++|+|+++.+ ++++.|+.|++||+.+++....+.  + ...+.+++|+|++++|++
T Consensus       286 ~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~-~~~~~~~~~s~dg~~l~~  361 (433)
T 3bws_A          286 GIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--V-FDKPNTIALSPDGKYLYV  361 (433)
T ss_dssp             EEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--C-SSSEEEEEECTTSSEEEE
T ss_pred             EEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--C-CCCCCeEEEcCCCCEEEE
Confidence            99999998876554 344578899999999755 556889999999999988876653  3 467999999999998888


Q ss_pred             Eec---------------CCcEEEEEecCC
Q 019482          306 ASK---------------EWGAMITKLTVP  320 (340)
Q Consensus       306 ~~~---------------dg~i~iw~~~~~  320 (340)
                      ++.               ||.|++|++...
T Consensus       362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~  391 (433)
T 3bws_A          362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTD  391 (433)
T ss_dssp             EECCCCCTTTCTTSCCSSCCEEEEEETTTT
T ss_pred             EecCCCccccccccccccceEEEEEECCCC
Confidence            876               579999998643

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.3e-32  Score=233.18  Aligned_cols=235  Identities=9%  Similarity=0.087  Sum_probs=169.7

Q ss_pred             cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC--------CCCeEEEEecCCCEEEEE
Q 019482           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------SGDDFVCSTTNGGCKLFE   91 (340)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~~~d~~i~iw~   91 (340)
                      .++++|+      .|++|++|+.+.....   .......+.+|.+.|++++|+|        |+++||+++.|++|+|||
T Consensus       102 ~~las~~------~d~~v~lw~~~~~~~~---~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A          102 LFLACVC------QDNTVRLIITKNETII---TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR  172 (393)
T ss_dssp             EEEEEEE------TTSCEEEEEEETTEEE---EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred             CEEEEEe------CCCcEEEEECCCCccc---eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence            4566555      5777999998733211   1112234689999999999998        789999999999999999


Q ss_pred             ecCceeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCCCceeecc--------------------
Q 019482           92 VYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPSLRIILDE--------------------  150 (340)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~--------------------  150 (340)
                      +.+.........       |..+|.+++|+|++ .+|++++.|++|++||+++++.....                    
T Consensus       173 ~~~~~~~~~~~~-------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          173 LTDEGPILAGYP-------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             EETTEEEEEEEE-------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             CCCCceeeeecC-------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            988776555443       77899999999987 48999999999999999876543221                    


Q ss_pred             -----ccCccceeEEEec-CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC-----------------CceeeEEEcc
Q 019482          151 -----PKAHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD-----------------EKIELCRFSK  207 (340)
Q Consensus       151 -----~~~~~~i~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~~  207 (340)
                           ..|...+.++.|+ |+++.+++++.|+++++||+..++....+..+..                 .......|+|
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence                 2344578888887 6999999999999999999987765554432211                 1122233444


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      .....+   +++++.|+.|++||+.+++.......+..+|.+++|+|||++||+++.+| +.+|.+.
T Consensus       326 ~~~~~~---~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          326 RYMDYF---ATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             SCTTEE---EEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             CCCCEE---EEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            333211   57788999999999999998888888999999999999999999998766 7777654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=3.3e-30  Score=219.86  Aligned_cols=285  Identities=12%  Similarity=0.068  Sum_probs=213.5

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE-
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-   81 (340)
                      .+..+.+++|+|+..  .+++.++      .++.|++|+..        .......+..|. .+.+++|+|++++|+++ 
T Consensus        30 ~~~~~~~~~~s~dg~--~l~~~~~------~d~~i~v~d~~--------~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~   92 (391)
T 1l0q_A           30 VGSNPMGAVISPDGT--KVYVANA------HSNDVSIIDTA--------TNNVIATVPAGS-SPQGVAVSPDGKQVYVTN   92 (391)
T ss_dssp             CSSSEEEEEECTTSS--EEEEEEG------GGTEEEEEETT--------TTEEEEEEECSS-SEEEEEECTTSSEEEEEE
T ss_pred             cCCCcceEEECCCCC--EEEEECC------CCCeEEEEECC--------CCeEEEEEECCC-CccceEECCCCCEEEEEE
Confidence            345689999999543  3445443      45679999876        344445555554 89999999999988655 


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCCCCceeeccccCccceeEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM  160 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~  160 (340)
                      ..++.|++||+.+++....+.        +...+.+++|+|++++| ++++.++.|++||+.+++....+.. +..+.++
T Consensus        93 ~~~~~v~v~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~  163 (391)
T 1l0q_A           93 MASSTLSVIDTTSNTVAGTVK--------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGI  163 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEE--------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEe--------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-CCCcceE
Confidence            466999999999887655443        33578999999999977 6888899999999999887766654 4567999


Q ss_pred             EecCCCCeE-EEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC---CcceEEEEECCCCcE
Q 019482          161 DFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNK  236 (340)
Q Consensus       161 ~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~  236 (340)
                      +|+|+++++ ++++.|+.|++||+++++.+..+..  ...+.+++|+|+++.     ++.++   .++.|++||+++++.
T Consensus       164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~-----l~~~~~~~~~~~v~~~d~~~~~~  236 (391)
T 1l0q_A          164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTK-----AYVTNVDKYFNTVSMIDTGTNKI  236 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSE-----EEEEEECSSCCEEEEEETTTTEE
T ss_pred             EECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCCccceEECCCCCE-----EEEEecCcCCCcEEEEECCCCeE
Confidence            999999887 6777899999999999988877753  356899999999987     34333   689999999999988


Q ss_pred             EeeeeccCCCeeEEEECCCCCEE-EEeeCCCcEEEEeccCceEeecccccccc-------------cceeeEEEecCC--
Q 019482          237 IGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWSKRLHLG-------------TSIALVEFCPTQ--  300 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~--  300 (340)
                      +..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+......             .......|+.+.  
T Consensus       237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~  315 (391)
T 1l0q_A          237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITS  315 (391)
T ss_dssp             EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCS
T ss_pred             EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccc
Confidence            87777654 57899999999988 56688999999999998877655321100             001112233221  


Q ss_pred             --------eEEEEEecCCcEEEEEecCCC
Q 019482          301 --------RVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       301 --------~~l~~~~~dg~i~iw~~~~~~  321 (340)
                              ..+...+.|...++|++....
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~W~~~~g~  344 (391)
T 1l0q_A          316 GYIFLSEPVQFTDLSKDATEWKWDFGDGS  344 (391)
T ss_dssp             SEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred             ccccccceEEEEeCCCCceEEEEECCCCc
Confidence                    346677778899999986543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=3e-31  Score=214.43  Aligned_cols=243  Identities=11%  Similarity=0.019  Sum_probs=165.5

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe--
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST--   82 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--   82 (340)
                      .||..+.+.|+......+++|.-.     .+.++...+.++...+.    ....-.+|...|..+   ++++.+.++.  
T Consensus        87 ~~v~~~~~~~~~~~~~~~~~~~~~-----~~~v~sla~spd~~~~~----~~l~s~g~~~~v~~l---~~g~lv~ss~~g  154 (356)
T 2w18_A           87 VPVLQIVPVPDVYNLVCVALGNLE-----IREIRALFCSSDDESEK----QVLLKSGNIKAVLGL---TKRRLVSSSGTL  154 (356)
T ss_dssp             SCEEEECCCTTCCSCEEEEECSSS-----EEEEEEECC------CC----EEEEEEEEEEEEEEE---TTTEEEEEESSS
T ss_pred             ceeEEEEEcCcccceeeeeecccc-----ccceEEEEECCCccccc----cEEEeCCCeEEEEec---CCCcEEEecccC
Confidence            477778888766555555555421     12244444444322211    111123444445443   4555555533  


Q ss_pred             cCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEec---CCCeEEEccCCCcEEEEeCCCCceeeccccCcc---
Q 019482           83 TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSV---DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK---  155 (340)
Q Consensus        83 ~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~---  155 (340)
                      .|+.|++|++.. ++.......       |...+..++|+|   ++.+|++++.|++|++||+++++.+..+..++.   
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~-------~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~  227 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFL-------MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA  227 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEE-------CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C
T ss_pred             CCCcEEEEEECCCCceeeeecc-------CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee
Confidence            588999999944 544433322       667888999999   779999999999999999999999888876553   


Q ss_pred             ceeEEEecCCCCeE------------EEeeCCCeEEEEEccCCeeEEEee----cCCCCceeeEEEccCCCcceEEEEEe
Q 019482          156 SVLDMDFSLDSEFL------------ATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       156 ~i~~~~~~~~~~~l------------~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      .+.+++|+|+|+++            ++|+.|++|++||..+++.+..+.    ..+...+.+..++  +..     +++
T Consensus       228 ~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~-----lAS  300 (356)
T 2w18_A          228 SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHC-----AAA  300 (356)
T ss_dssp             CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTE-----EEE
T ss_pred             eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCE-----EEE
Confidence            57778999999876            567889999999999998876652    2232233333333  443     688


Q ss_pred             cCCcceEEEEECCCCcEEeeeeccCCCee-EEEECCCCCEEEEeeCCCcEEEEec
Q 019482          220 RGDKALLAVYDISTWNKIGHKRLLRKPAS-VLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                      ++.|++|++||+.+++.+..+.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus       301 gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          301 ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            88999999999999999999988876554 6899999999999999999999996

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=100.00  E-value=3.9e-31  Score=226.84  Aligned_cols=301  Identities=13%  Similarity=0.065  Sum_probs=215.0

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCc--ccCCCceEEEEe--CCCCCCcccCCeeeEEEecCCCCeeEEEEcC--------
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRA--SSSPSVLEIFSF--DPKTTSVYTSPLVTYVFDESEGDPMTIAVNP--------   73 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~--~~~~~~i~i~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------   73 (340)
                      ++...+|.+...  .+++.|+-...  +..+..+++|++  ...      .......+.+|...+..+++++        
T Consensus        64 ~~~~~~w~~~g~--~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  135 (415)
T 2hqs_A           64 EVQPAAWSALGI--DAVVVGQVTPNPDGSYNVAYQLVDTGGAPG------TVLAQNSYKVNKQWLRYAGHTASDEVFEKL  135 (415)
T ss_dssp             GCCHHHHHTTTC--CEEEEEEEEECTTSCEEEEEEEEECSSSTT------CEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHhcCC--CEEEEEEEEECCCCeEEEEEEEEeCCCCCC------CEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence            566778887544  56666652110  112237999998  422      1223456888988888888875        


Q ss_pred             ------CCCeEEEEecC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC---cEEE
Q 019482           74 ------SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG---HLRI  138 (340)
Q Consensus        74 ------~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~  138 (340)
                            .+..++.++.+      +.|++||++... ...+.       .|...+.+++|+|||++|++++.++   .|++
T Consensus       136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~-------~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~  207 (415)
T 2hqs_A          136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVH-------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVI  207 (415)
T ss_dssp             HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEE-------EESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEe-------CCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence                  25667766654      689999997543 23332       2567899999999999999998875   9999


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      ||+.+++.. .+..+...+.+++|+|||+.|+ +++.|+  .|++||+++++. ..+.. +...+.+++|+|+|+.+   
T Consensus       208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-~~~~~~~~~~spdg~~l---  281 (415)
T 2hqs_A          208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDSQNL---  281 (415)
T ss_dssp             EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-CSSCEEEEEECTTSSEE---
T ss_pred             EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-CCCcccceEECCCCCEE---
Confidence            999988765 4556667899999999999887 666655  499999988776 34443 44679999999999972   


Q ss_pred             EEEecCCcc--eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccccc
Q 019482          216 CTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       216 ~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~  290 (340)
                       ++.+..++  .|.+||+.+++. ..+..+...+..++|+|+|++|++++.+   ..|++||+.+++.....  .+  ..
T Consensus       282 -~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~--~~--~~  355 (415)
T 2hqs_A          282 -AFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS--ST--FL  355 (415)
T ss_dssp             -EEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC--CS--SS
T ss_pred             -EEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec--CC--CC
Confidence             22233344  788889988764 3444556678899999999999988764   58999999988775432  23  27


Q ss_pred             eeeEEEecCCeEEEEEecCC---cEEEEEecCCCCCCCCcccccccccccc
Q 019482          291 IALVEFCPTQRVVLTASKEW---GAMITKLTVPADWKGLSLPLLHSHSQNS  338 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~h~~~v~~  338 (340)
                      +.+++|+|||++|++++.++   .+++|++...    .......|.+.|.+
T Consensus       356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~----~~~~l~~~~~~v~~  402 (415)
T 2hqs_A          356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKF  402 (415)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEE
T ss_pred             cCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC----cEEEeeCCCCCCcC
Confidence            89999999999999988876   6788876522    23334445555544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.97  E-value=1.1e-28  Score=226.91  Aligned_cols=290  Identities=10%  Similarity=0.039  Sum_probs=201.1

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCC---CeeEEEEcCCCCeEEEE
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~   81 (340)
                      .++.+++|+|+.   .+++.       +.++.+.+|+..        .......+.+|..   .|.+++|||||++|+++
T Consensus        17 ~~~~~~~~spdg---~~~~~-------~~dg~i~~~d~~--------~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~   78 (723)
T 1xfd_A           17 IHDPEAKWISDT---EFIYR-------EQKGTVRLWNVE--------TNTSTVLIEGKKIESLRAIRYEISPDREYALFS   78 (723)
T ss_dssp             CCCCCCCBSSSS---CBCCC-------CSSSCEEEBCGG--------GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEE
T ss_pred             ccccccEEcCCC---cEEEE-------eCCCCEEEEECC--------CCcEEEEeccccccccccceEEECCCCCEEEEE
Confidence            457889999954   45552       245678888776        3333345566654   49999999999999998


Q ss_pred             ecC---------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecccc
Q 019482           82 TTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPK  152 (340)
Q Consensus        82 ~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  152 (340)
                      +.+         +.+++||+.+++. ..+...    ..+...+..++|||||++|+.++. +.|++||+.+++.......
T Consensus        79 ~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~----~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           79 YNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP----EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             ESCCCCSSSCCCSEEEEEESSSCCC-EECCCT----TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             ecCccceeecceeeEEEEECCCCce-EeccCC----ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence            764         6788999988764 222111    123445888999999999999875 7899999998876554443


Q ss_pred             Cccce------------------eEEEecCCCCeEEEeeCCC----------------------------------eEEE
Q 019482          153 AHKSV------------------LDMDFSLDSEFLATTSTDG----------------------------------SARI  180 (340)
Q Consensus       153 ~~~~i------------------~~~~~~~~~~~l~~~~~d~----------------------------------~v~i  180 (340)
                      +...+                  .+++|+|||+.|++++.|+                                  .|++
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~  232 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHV  232 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEE
Confidence            33323                  7899999999999887543                                  7999


Q ss_pred             EEccCCeeEEEeecC-----CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-CCCe----eEE
Q 019482          181 WKTEDGVAWTFLTRN-----SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPA----SVL  250 (340)
Q Consensus       181 wd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i----~~~  250 (340)
                      ||+.+++....+..+     +...+..++|+|||+.++ ........+..|.+||+.+++.......+ ...+    ..+
T Consensus       233 ~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  311 (723)
T 1xfd_A          233 IGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV-TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEP  311 (723)
T ss_dssp             EESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE-EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCC
T ss_pred             EECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE-EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCc
Confidence            999988765555432     245688999999998521 11112235678999999998876554432 3333    378


Q ss_pred             EECCCCCEEEEe--eCCC------cEEEEe-ccCceE--eecccccccccceee-EEEecCCeEEEEEecC---CcEEEE
Q 019482          251 SISLDGKYLAMG--SKDG------DICVVD-VKKMEI--NHWSKRLHLGTSIAL-VEFCPTQRVVLTASKE---WGAMIT  315 (340)
Q Consensus       251 ~~s~~~~~l~~~--~~dg------~i~i~d-~~~~~~--~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d---g~i~iw  315 (340)
                      +|+|||+.|+..  ..++      .|.+|| ..+++.  ...+...+  ..+.. ++|+|||+.|+..+.+   +.++||
T Consensus       312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence            999999977754  4566      577777 344441  33332222  23444 6999999988766555   789999


Q ss_pred             EecCCC
Q 019482          316 KLTVPA  321 (340)
Q Consensus       316 ~~~~~~  321 (340)
                      +++...
T Consensus       390 ~~~~~~  395 (723)
T 1xfd_A          390 SANTVG  395 (723)
T ss_dssp             EECSST
T ss_pred             EEeCCC
Confidence            998654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.97  E-value=6.9e-28  Score=222.09  Aligned_cols=293  Identities=11%  Similarity=0.031  Sum_probs=204.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCC-CCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-------------------
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKS-SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-------------------   63 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~-~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-------------------   63 (340)
                      ...+.+++|+|   ++..+++++. .+ ......|.+|+.+..        .....+..+.                   
T Consensus        36 ~~~~~~~~~Sp---dG~~la~~~~~d~-~~~~~~i~~~d~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (741)
T 2ecf_A           36 GPTLMKPKVAP---DGSRVTFLRGKDS-DRNQLDLWSYDIGSG--------QTRLLVDSKVVLPGTETLSDEEKARRERQ  103 (741)
T ss_dssp             CCCCEEEEECT---TSSEEEEEECCSS-CTTEEEEEEEETTTC--------CEEEEECGGGTC-----------------
T ss_pred             CCCCCCceEec---CCCEEEEEeccCC-CCcccEEEEEECCCC--------ceeEccchhhcccccccccchhhhhhhhh
Confidence            45689999999   4556666553 21 001125777776522        2222222222                   


Q ss_pred             -----CCeeEEEEcCCCCeEEEEecCCCEEEEEecCce--eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           64 -----GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA--TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        64 -----~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                           ..|.+++|+|||++|++++. +.|++||+.++.  ....+.       .+...+.+++|+|||++|++++ ++.|
T Consensus       104 ~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~-------~~~~~~~~~~~SPDG~~la~~~-~~~i  174 (741)
T 2ecf_A          104 RIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLT-------HGEGFATDAKLSPKGGFVSFIR-GRNL  174 (741)
T ss_dssp             ---CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCC-------CSSSCEEEEEECTTSSEEEEEE-TTEE
T ss_pred             hhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcc-------cCCcccccccCCCCCCEEEEEe-CCcE
Confidence                 23889999999999999887 889999998762  122221       2557799999999999999887 5689


Q ss_pred             EEEeCCCCceeeccccCccc----------------eeEEEecCCCCeEEEeeCCC------------------------
Q 019482          137 RIMHWPSLRIILDEPKAHKS----------------VLDMDFSLDSEFLATTSTDG------------------------  176 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~d~------------------------  176 (340)
                      ++||+.+++.......+...                +..+.|+|||++|++++.|+                        
T Consensus       175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence            99999987765444333322                47899999999999988765                        


Q ss_pred             ---------eEEEEEccC-CeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC
Q 019482          177 ---------SARIWKTED-GVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK  245 (340)
Q Consensus       177 ---------~v~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  245 (340)
                               .|++||+.+ ++....... .+...+..++| |||+.+++...-....+..|++||+.+++....+..+..
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~  333 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP  333 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC
Confidence                     889999988 776544322 34567899999 999974332222334578999999999987666655443


Q ss_pred             ----CeeEEEECCCCCEEEEeeCCCcEEEEecc-CceEeecccccccccceeeE-EEecCCeEEE-EEecCC--cEEEEE
Q 019482          246 ----PASVLSISLDGKYLAMGSKDGDICVVDVK-KMEINHWSKRLHLGTSIALV-EFCPTQRVVL-TASKEW--GAMITK  316 (340)
Q Consensus       246 ----~i~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~-~~~~dg--~i~iw~  316 (340)
                          .+..++|+|||+++++++.||.++||.+. .++ ...+. .+ ...+..+ .|+||++.|+ +++.++  .++||+
T Consensus       334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-~~-~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT-HG-NWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC-CS-SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee-ec-ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence                45689999999999999999988887765 333 44442 33 3567777 5999998765 455555  899999


Q ss_pred             ecCCC
Q 019482          317 LTVPA  321 (340)
Q Consensus       317 ~~~~~  321 (340)
                      ++...
T Consensus       411 ~~~~g  415 (741)
T 2ecf_A          411 VPLQG  415 (741)
T ss_dssp             EETTC
T ss_pred             EEcCC
Confidence            97643

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.97  E-value=2.1e-28  Score=200.40  Aligned_cols=256  Identities=13%  Similarity=0.019  Sum_probs=185.2

Q ss_pred             ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecC-ceeeeeeccccCCCC
Q 019482           31 SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPL  109 (340)
Q Consensus        31 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~  109 (340)
                      .+.++.|.+|+..        ..... .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......      
T Consensus        18 ~~~~~~i~~~d~~--------~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~------   81 (297)
T 2ojh_A           18 GSMRSSIEIFNIR--------TRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG------   81 (297)
T ss_dssp             CCCCEEEEEEETT--------TTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT------
T ss_pred             CCcceeEEEEeCC--------CCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc------
Confidence            3467789999876        22222 3556888999999999999999887 67899999988 654322211      


Q ss_pred             CCCCCeEEEEEecCCCeEEEcc--CCCcEEEE--eCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEcc
Q 019482          110 QDAGPQKCLSFSVDGSRFAAGG--VDGHLRIM--HWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTE  184 (340)
Q Consensus       110 ~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~--d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~  184 (340)
                      .+...+.+++|+|++++|++++  .++...+|  ++.+++. ..+. ....+..++|+|+++.|+ +++.++.+++|+++
T Consensus        82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A           82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee-cCCCccceEECCCCCEEEEEECCCCceEEEEEE
Confidence            1336788999999999999988  33444555  5555442 2332 333588899999999877 77789999999964


Q ss_pred             C-CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482          185 D-GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (340)
Q Consensus       185 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  262 (340)
                      . +.....+. .+...+.+++|+|+++.+    ++.+..++.+.+|+++ .+..+..+..+...+..+.|+|+|++|+++
T Consensus       160 ~~~~~~~~~~-~~~~~~~~~~~s~dg~~l----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          160 IDSGVETRLT-HGEGRNDGPDYSPDGRWI----YFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             TTTCCEEECC-CSSSCEEEEEECTTSSEE----EEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             CCCCcceEcc-cCCCccccceECCCCCEE----EEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence            3 22333343 344578999999999862    3344467888899876 455556666677788999999999999988


Q ss_pred             eCC-----------CcEEEEeccCceEeecccc-cccccceeeEEEecCCeEEEEEecCC
Q 019482          263 SKD-----------GDICVVDVKKMEINHWSKR-LHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       263 ~~d-----------g~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      +.+           +.|++||+.+++....... .| ...+..++|+|++++|++++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEEEEEecc
Confidence            765           5699999988765433322 33 46899999999999998887763

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=3e-27  Score=208.73  Aligned_cols=278  Identities=10%  Similarity=0.028  Sum_probs=207.7

Q ss_pred             eeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEE
Q 019482           11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLF   90 (340)
Q Consensus        11 ~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw   90 (340)
                      +++|   +..+++++.      .++.|.+|+..        +.....++..+.. +..++|+|+|++|++++.|+.|++|
T Consensus       144 ~~~p---~~~~~vs~~------~d~~V~v~D~~--------t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~  205 (543)
T 1nir_A          144 DLDL---PNLFSVTLR------DAGQIALVDGD--------SKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMI  205 (543)
T ss_dssp             CCCG---GGEEEEEEG------GGTEEEEEETT--------TCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             ccCC---CCEEEEEEc------CCCeEEEEECC--------CceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEE
Confidence            3566   335566544      46679999765        3344455663333 8999999999999999999999999


Q ss_pred             Ee--cCceeeeeeccccCCCCCCCCCeEEEEEec----CCCeEEEccC-CCcEEEEeCCCCceeeccccC----------
Q 019482           91 EV--YGGATDINLLAKKMPPLQDAGPQKCLSFSV----DGSRFAAGGV-DGHLRIMHWPSLRIILDEPKA----------  153 (340)
Q Consensus        91 ~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~----------  153 (340)
                      |+  .+.+....+.        +...+..++|+|    ||+++++++. +++|.+||..+++.+..+..+          
T Consensus       206 D~~~~t~~~~~~i~--------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          206 DLWAKEPTKVAEIK--------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             ETTSSSCEEEEEEE--------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             ECcCCCCcEEEEEe--------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence            99  6666544432        335679999999    9999998884 899999999998877665432          


Q ss_pred             cc-ceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482          154 HK-SVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (340)
Q Consensus       154 ~~-~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  231 (340)
                      .. .+..+.++|++.. +++...++.|.+||..+.+.+..........+..+.|+|+++++    ++++..++.|.+||+
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l----~va~~~~~~v~v~D~  353 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF----MTAANNSNKVAVIDS  353 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE----EEEEGGGTEEEEEET
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE----EEEecCCCeEEEEEC
Confidence            22 6889999997664 56667889999999988665442121234568899999999963    345567889999999


Q ss_pred             CCCcEEeeeec----cCCCeeEEEECCC-CCEEEEee-CCCcEEEEeccC-------ceEeecccccccccceeeEEEec
Q 019482          232 STWNKIGHKRL----LRKPASVLSISLD-GKYLAMGS-KDGDICVVDVKK-------MEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       232 ~~~~~~~~~~~----~~~~i~~~~~s~~-~~~l~~~~-~dg~i~i~d~~~-------~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      .+++.+..+..    |.+....+ ++|+ +..++++. .|++|.+||+.+       .++++.+. .+ +..+..++|+|
T Consensus       354 ~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~-~~-g~~~~~v~~~p  430 (543)
T 1nir_A          354 KDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQ-GGGSLFIKTHP  430 (543)
T ss_dssp             TTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE-CS-CSCCCCEECCT
T ss_pred             CCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE-cC-CCCceEEEcCC
Confidence            99998877764    33323333 4677 66666665 579999999988       77777764 44 45788999999


Q ss_pred             CCeEEEEEe-------cCCcEEEEEecCCC
Q 019482          299 TQRVVLTAS-------KEWGAMITKLTVPA  321 (340)
Q Consensus       299 ~~~~l~~~~-------~dg~i~iw~~~~~~  321 (340)
                      |+++|++++       .+++|.||++....
T Consensus       431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          431 KSSHLYVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             TCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             CCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence            999999987       37899999998655

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.96  E-value=1.1e-26  Score=193.48  Aligned_cols=267  Identities=8%  Similarity=-0.005  Sum_probs=189.2

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-CCCEEEEEecCcee-eeeeccccCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGAT-DINLLAKKMPPLQ  110 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~-~~~~~~~~~~~~~  110 (340)
                      .++.|.+|+.+        +......+..+...+ .++|+|+|+++++++. ++.|.+||+.+++. ......       
T Consensus        18 ~~~~v~~~d~~--------~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-------   81 (331)
T 3u4y_A           18 HLRRISFFSTD--------TLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE-------   81 (331)
T ss_dssp             GGTEEEEEETT--------TCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-------
T ss_pred             CCCeEEEEeCc--------ccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-------
Confidence            55679999876        333334445555667 9999999997776665 78999999988775 333221       


Q ss_pred             CCCCeEEEEEecCCCeEEEccCCC---cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-eCCCe-EEEEEccC
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGVDG---HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGS-ARIWKTED  185 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~-v~iwd~~~  185 (340)
                      +..+..+++|+|++++++++..++   .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. +.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            334444499999999999666553   899999998887765543 4456899999999866555 45578 99999875


Q ss_pred             CeeEEEe---ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---EeeeeccCCCeeEEEECCCCCEE
Q 019482          186 GVAWTFL---TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---IGHKRLLRKPASVLSISLDGKYL  259 (340)
Q Consensus       186 ~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l  259 (340)
                      ...+...   .......+..++|+|+++++    +++...++.|.+||+.+++.   +..+.. ...+..++|+|+|+++
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l  235 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFA----FVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTV  235 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEE----EEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEE----EEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEE
Confidence            4332111   11223458899999999863    45566789999999998887   665554 3567889999999977


Q ss_pred             EEee-CCCcEEEEeccCceE--eeccccc-----ccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482          260 AMGS-KDGDICVVDVKKMEI--NHWSKRL-----HLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA  321 (340)
Q Consensus       260 ~~~~-~dg~i~i~d~~~~~~--~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~  321 (340)
                      ++++ .++.|.+||+.+++.  +..+...     ........++|+|||++|++++ .++.|.+|++..+.
T Consensus       236 ~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          236 YVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            7665 477899999998877  2221111     1011235689999999876555 46799999997543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.96  E-value=1.5e-26  Score=193.47  Aligned_cols=268  Identities=11%  Similarity=0.116  Sum_probs=187.9

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC-CCEEEEEec--CceeeeeeccccCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVY--GGATDINLLAKKMPPL  109 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~~i~iw~~~--~~~~~~~~~~~~~~~~  109 (340)
                      .++.|.+|+++....     ... .....|...+.+++|+|+|++|++++.+ +.|.+|++.  +++.......      
T Consensus        13 ~~~~v~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~------   80 (343)
T 1ri6_A           13 ESQQIHVWNLNHEGA-----LTL-TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------   80 (343)
T ss_dssp             GGTEEEEEEECTTSC-----EEE-EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE------
T ss_pred             CCCeEEEEEECCCCc-----EEE-eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc------
Confidence            567799999974221     111 2223477789999999999999988876 899999997  4432211110      


Q ss_pred             CCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCC---CCceeeccccCccceeEEEecCCCCeEEEee-CCCeEEEEEcc
Q 019482          110 QDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP---SLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTE  184 (340)
Q Consensus       110 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~  184 (340)
                      .....+..++|+|++++|++++ .++.|.+||+.   +.+..... .....+.+++|+|+++++++++ .++.|++||+.
T Consensus        81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEec
Confidence            1123678999999999876665 48889999994   33333333 3344688999999999888777 88999999998


Q ss_pred             C-CeeEE----EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--CcE--Eeeeecc------CCCeeE
Q 019482          185 D-GVAWT----FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHKRLL------RKPASV  249 (340)
Q Consensus       185 ~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~------~~~i~~  249 (340)
                      + ++...    .+.......+..++|+|+++.+    ++++..++.|.+||++.  ++.  .......      ...+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l----~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  235 (343)
T 1ri6_A          160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA----YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD  235 (343)
T ss_dssp             TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred             CCCceeeecccccccCCCCCcceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence            7 54432    2333334468899999999863    34556789999999954  332  2222211      124568


Q ss_pred             EEECCCCCEEEEe-eCCCcEEEEecc--C--ceEeecccccccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCC
Q 019482          250 LSISLDGKYLAMG-SKDGDICVVDVK--K--MEINHWSKRLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVP  320 (340)
Q Consensus       250 ~~~s~~~~~l~~~-~~dg~i~i~d~~--~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~  320 (340)
                      ++|+|+|++|+++ ..++.|.+||+.  +  .+.+..+. .  ...+..++|+|+|++|++++ .++.+.+|+++..
T Consensus       236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~--~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~  309 (343)
T 1ri6_A          236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-T--ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  309 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-C--SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec-C--CCccceEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            9999999988755 478999999998  3  33333332 1  23488999999999888877 6899999988743

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.96  E-value=9.6e-26  Score=189.49  Aligned_cols=286  Identities=12%  Similarity=0.068  Sum_probs=204.1

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE-ec
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS-TT   83 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~   83 (340)
                      ..+..++|+|+..  .+++..........++.|.+|+..  +      ......+.. ...+..++|+|+|++++++ ..
T Consensus        41 ~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~v~~~d~~--~------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~  109 (353)
T 3vgz_A           41 KGAYEMAYSQQEN--ALWLATSQSRKLDKGGVVYRLDPV--T------LEVTQAIHN-DLKPFGATINNTTQTLWFGNTV  109 (353)
T ss_dssp             SSEEEEEEETTTT--EEEEEECCCTTTEESEEEEEECTT--T------CCEEEEEEE-SSCCCSEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCC--EEEEEcCCCcCCCCCccEEEEcCC--C------CeEEEEEec-CCCcceEEECCCCCEEEEEecC
Confidence            3467889999543  233322211111125556666554  2      222233332 3457899999999966554 55


Q ss_pred             CCCEEEEEecCceeeeeeccccCCC--CCCCCCeEEEEEecCCCeEEEcc--CCCcEEEEeCCCCceeeccccCccceeE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVLD  159 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~i~~  159 (340)
                      ++.|.+||..+++....+.......  ......+.+++|+|++++++++.  .++.|.+||+.+++....+..+...+.+
T Consensus       110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence            7899999999887655543321100  00112368899999999877765  4788999999998887766545556889


Q ss_pred             EEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          160 MDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      ++|+|+++++++++.++.|.+||+.+++.+..+...   ....+..++|+|+++.+    .++...++.|.+||..+++.
T Consensus       190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l----~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRA----FITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEE----EEEESSSSEEEEEETTTCCE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEE----EEEeCCCCEEEEEECCCCcE
Confidence            999999999999999999999999999988777642   23457789999999963    34455679999999999988


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      +..+....  ...++|+|+|+++++++ .++.|.+||..+++.+..+..   ...+.+++|+|||++|+.+..++
T Consensus       266 ~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          266 LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEEEEEEccc
Confidence            77766543  25699999999766665 689999999999988776543   34689999999999777766653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=1e-26  Score=199.38  Aligned_cols=237  Identities=19%  Similarity=0.157  Sum_probs=180.8

Q ss_pred             CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC---CEEEEEecCceeeeeeccccCCCCCC
Q 019482           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG---GCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      +.|.+|+++..         ....+.+|...+.+++|+|+|++|++++.++   .|++||+.+++... +.       .+
T Consensus       159 ~~i~i~d~~g~---------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~-------~~  221 (415)
T 2hqs_A          159 YELRVSDYDGY---------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-------SF  221 (415)
T ss_dssp             EEEEEEETTSC---------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE-------CC
T ss_pred             ceEEEEcCCCC---------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee-------cC
Confidence            67888887621         1245667889999999999999999999875   89999999876532 22       25


Q ss_pred             CCCeEEEEEecCCCeEE-EccCCCc--EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CC--eEEEEEccC
Q 019482          112 AGPQKCLSFSVDGSRFA-AGGVDGH--LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DG--SARIWKTED  185 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~-~~~~dg~--i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~v~iwd~~~  185 (340)
                      ...+.+++|+|||++|+ +++.++.  |++||+.+++. ..+..+...+.+++|+|||++|++++. ++  .|++||+.+
T Consensus       222 ~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~  300 (415)
T 2hqs_A          222 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  300 (415)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC
Confidence            56899999999999887 6665554  99999988775 456667778999999999999888875 44  688889887


Q ss_pred             CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC---cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (340)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  262 (340)
                      ++.. .+.. +...+.+++|+|+|+++     +.++.   +..|.+||+.+++.. .+..+. .+.+++|+|+|++|+++
T Consensus       301 ~~~~-~l~~-~~~~~~~~~~spdG~~l-----~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~  371 (415)
T 2hqs_A          301 GAPQ-RITW-EGSQNQDADVSSDGKFM-----VMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYS  371 (415)
T ss_dssp             SCCE-ECCC-SSSEEEEEEECTTSSEE-----EEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEE
T ss_pred             CCEE-EEec-CCCcccCeEECCCCCEE-----EEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEE
Confidence            7643 3332 34568899999999973     33322   468999999988764 344443 78999999999999998


Q ss_pred             eCCC---cEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482          263 SKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       263 ~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      +.++   .|++||+..+... .+ ..+ ...|.+++|+|...
T Consensus       372 s~~~~~~~l~~~d~~g~~~~-~l-~~~-~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          372 SSQGMGSVLNLVSTDGRFKA-RL-PAT-DGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEETTEEEEEEEETTSCCEE-EC-CCS-SSEEEEEEECCCCC
T ss_pred             EcCCCccEEEEEECCCCcEE-Ee-eCC-CCCCcCCccccccc
Confidence            8877   7999999765543 33 234 56899999999643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=1.8e-26  Score=203.85  Aligned_cols=294  Identities=6%  Similarity=0.030  Sum_probs=214.1

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcC----CCCeEEEE
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNP----SGDDFVCS   81 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~   81 (340)
                      .+.+++|+|+   ++++++++      .++.|.+|+++..      +.....++. +...+..++|+|    +|++++++
T Consensus       180 ~~~~v~~spd---g~~l~v~~------~d~~V~v~D~~~~------t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~  243 (543)
T 1nir_A          180 AVHISRMSAS---GRYLLVIG------RDARIDMIDLWAK------EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAG  243 (543)
T ss_dssp             TEEEEEECTT---SCEEEEEE------TTSEEEEEETTSS------SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEE
T ss_pred             ccceEEECCC---CCEEEEEC------CCCeEEEEECcCC------CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEE
Confidence            4788999994   44555554      3477999998422      233344555 345689999999    99999988


Q ss_pred             ec-CCCEEEEEecCceeeeeeccccC----CCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCCCCceee-ccccCc
Q 019482           82 TT-NGGCKLFEVYGGATDINLLAKKM----PPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPSLRIIL-DEPKAH  154 (340)
Q Consensus        82 ~~-d~~i~iw~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~-~~~~~~  154 (340)
                      +. +++|.+||..+.+....+.....    ..+.....+..+.++|++. ++++...++.|.+||+.+.+.+. ....+.
T Consensus       244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~  323 (543)
T 1nir_A          244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA  323 (543)
T ss_dssp             EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECC
T ss_pred             EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccC
Confidence            85 79999999998877665543110    0011234789999999765 55667788999999998765433 122344


Q ss_pred             cceeEEEecCCCCeEEEe-eCCCeEEEEEccCCeeEEEeecC---CCCceeeEEEccCCCcceEEEEEecC-CcceEEEE
Q 019482          155 KSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRG-DKALLAVY  229 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~  229 (340)
                      ..+.++.|+|++++++++ ..+++|.+||.++++++..+...   |.+....+ ++|++...    ++++. .|++|.+|
T Consensus       324 ~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~----~~s~~~~d~~V~v~  398 (543)
T 1nir_A          324 PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPV----WSTSHLGDGSISLI  398 (543)
T ss_dssp             SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEE----EEEEBSSSSEEEEE
T ss_pred             cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccE----EEeccCCCceEEEE
Confidence            567889999999987655 46889999999999998887632   22222222 46775442    34443 68999999


Q ss_pred             ECCC-------CcEEeeeeccCCCeeEEEECCCCCEEEEee-------CCCcEEEEeccCceEe-eccc-------cccc
Q 019482          230 DIST-------WNKIGHKRLLRKPASVLSISLDGKYLAMGS-------KDGDICVVDVKKMEIN-HWSK-------RLHL  287 (340)
Q Consensus       230 d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~-~~~~-------~~~~  287 (340)
                      |+.+       ++.++.+..+...+..++++|++++|++++       .+++|.+||+.+++.. ..+.       ..+ 
T Consensus       399 d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~-  477 (543)
T 1nir_A          399 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-  477 (543)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-
T ss_pred             EeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC-
Confidence            9998       889999999888889999999999999987       2679999999988766 3221       122 


Q ss_pred             ccceeeEEEecCCeEEEEEe-----cCCcEEEEEecCCC
Q 019482          288 GTSIALVEFCPTQRVVLTAS-----KEWGAMITKLTVPA  321 (340)
Q Consensus       288 ~~~i~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~  321 (340)
                      ...+..+.|+|+|+.++++.     .|+.|.|||.....
T Consensus       478 ~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          478 AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred             CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence            46899999999999888663     47999999987544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.96  E-value=8.8e-26  Score=189.43  Aligned_cols=271  Identities=12%  Similarity=0.120  Sum_probs=184.6

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec---CCCEEEEEecCceeeeeeccccCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT---NGGCKLFEVYGGATDINLLAKKMPPL  109 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~  109 (340)
                      .++.+.+|.++.....+.     ......+...+..++|+|+|+ |++++.   ++.|++|++.+++........     
T Consensus        14 ~~~~i~v~~~d~~tg~~~-----~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-----   82 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLT-----NDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-----   82 (347)
T ss_dssp             SCCEEEEEEEETTTTEEE-----EEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE-----
T ss_pred             CCCCEEEEEEcCCCCeEE-----EeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee-----
Confidence            456799999986544331     122334557788999999999 655554   578999999776532211100     


Q ss_pred             CCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCC-Cc--eeecccc---------CccceeEEEecCCCCeEEEeeCCC
Q 019482          110 QDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LR--IILDEPK---------AHKSVLDMDFSLDSEFLATTSTDG  176 (340)
Q Consensus       110 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~--~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~  176 (340)
                      .+...+..++|+|+|++|++++ .++.|.+|++.. +.  .+.....         ....+.+++|+|+++++++...++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            1345678999999999888877 678999999963 22  2222211         112478899999999666666788


Q ss_pred             eEEEEEcc-CCeeEE--EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC--CcE--EeeeeccC-----
Q 019482          177 SARIWKTE-DGVAWT--FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST--WNK--IGHKRLLR-----  244 (340)
Q Consensus       177 ~v~iwd~~-~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~~-----  244 (340)
                      .|++|++. +++...  .+.......+..++|+|+|+++    +++...++.+.+|++..  ++.  +.......     
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  238 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA----FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA  238 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE----EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence            99999998 454322  2222233357889999999863    35567788999999874  442  22222222     


Q ss_pred             -CCeeEEEECCCCCEEEE-eeCCCcEEEEeccC-c--eEeecccccccccceeeEEEecCCeEEEEEecC-CcEEEEEec
Q 019482          245 -KPASVLSISLDGKYLAM-GSKDGDICVVDVKK-M--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-WGAMITKLT  318 (340)
Q Consensus       245 -~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~-~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iw~~~  318 (340)
                       ..+..++|+|||++|++ ...++.|.+|++.. +  +.+..+. .+ ...+..++|+|||++|++++.+ +.+.+|+++
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-TE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE-CS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-cC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence             34788999999998855 45689999999973 2  3333222 22 3468899999999988887764 899999886


Q ss_pred             CC
Q 019482          319 VP  320 (340)
Q Consensus       319 ~~  320 (340)
                      ..
T Consensus       317 ~~  318 (347)
T 3hfq_A          317 LT  318 (347)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.96  E-value=6e-26  Score=189.39  Aligned_cols=265  Identities=12%  Similarity=-0.002  Sum_probs=193.7

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCC-C-CeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-G-DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPL  109 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  109 (340)
                      .++.|.+|+..        +......+.... . .+..++|+|+|++++ ++..++.|.+||+.+++....+.....  .
T Consensus         9 ~~~~v~~~d~~--------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~--~   78 (337)
T 1pby_B            9 RPDKLVVIDTE--------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--E   78 (337)
T ss_dssp             TTTEEEEEETT--------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--T
T ss_pred             CCCeEEEEECC--------CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc--c
Confidence            45669999875        333333343222 2 588999999998765 455678999999988776554432110  0


Q ss_pred             CCCCCeEEEEEecCCCeEEEcc------------CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCe
Q 019482          110 QDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS  177 (340)
Q Consensus       110 ~~~~~v~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  177 (340)
                      .+...+.+++|+|++++++++.            .++.|.+||+.+++....+.. ...+.+++|+|++++|+++  ++.
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~  155 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRD  155 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSS
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCe
Confidence            0112567899999999988885            579999999998877655543 4467889999999988888  688


Q ss_pred             EEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc-----------------------eEEEEECCCC
Q 019482          178 ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-----------------------LLAVYDISTW  234 (340)
Q Consensus       178 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-----------------------~i~i~d~~~~  234 (340)
                      |++||+++++.+..+.....  ...+.|+|++..++    +.+..++                       .|.+||+.++
T Consensus       156 i~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  229 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVW----NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCC----CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EEEEECCCCcEeeeeecccc--CCCceeCCCccEEe----eeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence            99999999988777654331  12447899998632    2222222                       5789999998


Q ss_pred             cEE-eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEE
Q 019482          235 NKI-GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAM  313 (340)
Q Consensus       235 ~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  313 (340)
                      +.. ..+..+...+..++|+|+|++++++  ++.|++||+.+++....+..   ...+.+++|+|||++|++++.++.|.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~  304 (337)
T 1pby_B          230 EMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLA  304 (337)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEE
T ss_pred             CceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEE
Confidence            764 2233445567889999999999988  78999999999888766543   24688999999999999999999999


Q ss_pred             EEEecCCC
Q 019482          314 ITKLTVPA  321 (340)
Q Consensus       314 iw~~~~~~  321 (340)
                      +|++....
T Consensus       305 v~d~~~~~  312 (337)
T 1pby_B          305 AYDAETLE  312 (337)
T ss_dssp             EEETTTCC
T ss_pred             EEECcCCc
Confidence            99986544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=4.1e-26  Score=209.14  Aligned_cols=285  Identities=13%  Similarity=0.086  Sum_probs=199.9

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      .+|.+++|+|+ .  .+++.        .++.+.+|+..        .... ..+..+...+.+++|+|||++|+++ .+
T Consensus        82 ~~v~~~~~spd-~--~~~~~--------~~~~i~~~d~~--------~~~~-~~l~~~~~~~~~~~~SpdG~~la~~-~~  140 (706)
T 2z3z_A           82 FPSFRTLDAGR-G--LVVLF--------TQGGLVGFDML--------ARKV-TYLFDTNEETASLDFSPVGDRVAYV-RN  140 (706)
T ss_dssp             CCCEEEEETTT-T--EEEEE--------ETTEEEEEETT--------TTEE-EEEECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred             cCceeEEECCC-C--eEEEE--------ECCEEEEEECC--------CCce-EEccCCcccccCCcCCCCCCEEEEE-EC
Confidence            46999999995 2  34442        23568899875        2222 2345567789999999999999985 67


Q ss_pred             CCEEEEEecC-----ceeeeeeccccCC-------CCCCCCCeEEEEEecCCCeEEEcc---------------------
Q 019482           85 GGCKLFEVYG-----GATDINLLAKKMP-------PLQDAGPQKCLSFSVDGSRFAAGG---------------------  131 (340)
Q Consensus        85 ~~i~iw~~~~-----~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~---------------------  131 (340)
                      +.|++|++.+     ++...........       ..++...+.++.|+|||++|++++                     
T Consensus       141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~  220 (706)
T 2z3z_A          141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES  220 (706)
T ss_dssp             TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred             CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence            8899999987     5543221111000       000112358899999999999887                     


Q ss_pred             ------------CCCcEEEEeCCCCceeeccc--cCccceeEEEecCCCCeEEEeeCCC-----eEEEEEccCCeeEEEe
Q 019482          132 ------------VDGHLRIMHWPSLRIILDEP--KAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFL  192 (340)
Q Consensus       132 ------------~dg~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~  192 (340)
                                  .+..|++||+.+++......  .+...+.+++|+|||+.|++++.++     .|++||+.+++....+
T Consensus       221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred             EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence                        44679999999887554332  3445789999999999999887665     8999999988443333


Q ss_pred             e-cCCCC---ceeeEEEcc--CCCcceEEEEEecCCcceEEEEECC-CCcEEeeeeccCCCeeE-EEECCCCCEEEEeeC
Q 019482          193 T-RNSDE---KIELCRFSK--DGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKRLLRKPASV-LSISLDGKYLAMGSK  264 (340)
Q Consensus       193 ~-~~~~~---~v~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~  264 (340)
                      . .....   .+..++|+|  +|+.     ++++..++.+++|+++ +++.+..+..+...+.. ++|+|+|+.|+.++.
T Consensus       301 ~~~~~~~~~~~~~~~~~sp~~dg~~-----l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~  375 (706)
T 2z3z_A          301 FVETDKHYVEPLHPLTFLPGSNNQF-----IWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST  375 (706)
T ss_dssp             EEEECSSCCCCCSCCEECTTCSSEE-----EEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred             EEccCCCeECccCCceeecCCCCEE-----EEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence            2 22221   246789999  9985     5677778888888876 56666667767777776 799999998876654


Q ss_pred             C-C----cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC----CcEEEEEecC
Q 019482          265 D-G----DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE----WGAMITKLTV  319 (340)
Q Consensus       265 d-g----~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iw~~~~  319 (340)
                      + +    .|..||+.+++... +.  + ...+.+++|+|||++|+....+    +.+++|++..
T Consensus       376 ~~~~~~~~l~~~d~~~~~~~~-l~--~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          376 EASPLERHFYCIDIKGGKTKD-LT--P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             SSCTTCBEEEEEETTCCCCEE-SC--C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             CCCCceEEEEEEEcCCCCcee-cc--C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            4 3    67777777765332 22  3 4568999999999988776544    4599998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.95  E-value=8.1e-27  Score=214.96  Aligned_cols=250  Identities=10%  Similarity=0.031  Sum_probs=186.0

Q ss_pred             CCCeeEEEEcCCCCeEEEEec-CC-----CEEEEEecCceeeeeeccccCC-----------------CCCCCCCeEEEE
Q 019482           63 EGDPMTIAVNPSGDDFVCSTT-NG-----GCKLFEVYGGATDINLLAKKMP-----------------PLQDAGPQKCLS  119 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~  119 (340)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++...........                 .......+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 87     8999999887654433221100                 000002378899


Q ss_pred             EecCCCeEEEccCCCcEEEEeCCCCc--eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC
Q 019482          120 FSVDGSRFAAGGVDGHLRIMHWPSLR--IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD  197 (340)
Q Consensus       120 ~~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  197 (340)
                      |+|||++|++++. +.|++||+.+++  ....+..+...+..++|+|||++|++++ ++.|++||+.+++.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            9999999998886 899999998873  3445666667899999999999999987 56999999998876554432221


Q ss_pred             C---------------ceeeEEEccCCCcceEEEEEecCCcc---------------------------------eEEEE
Q 019482          198 E---------------KIELCRFSKDGTKPFLFCTVQRGDKA---------------------------------LLAVY  229 (340)
Q Consensus       198 ~---------------~v~~~~~~~~~~~~~~~~~~~~~~d~---------------------------------~i~i~  229 (340)
                      .               .+..++|+|||+.+     +.++.|+                                 .|.+|
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l-----~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAI-----AYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCE-----EEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             ceeccccceeeeeccccccceEECCCCCEE-----EEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            1               14789999999983     3333232                                 78999


Q ss_pred             ECCC-CcEEeeee--ccCCCeeEEEECCCCCEEEEeeC-----CCcEEEEeccCceEeeccccccccc---ceeeEEEec
Q 019482          230 DIST-WNKIGHKR--LLRKPASVLSISLDGKYLAMGSK-----DGDICVVDVKKMEINHWSKRLHLGT---SIALVEFCP  298 (340)
Q Consensus       230 d~~~-~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~---~i~~~~~~~  298 (340)
                      |+.+ ++......  .+...+..++| |||++|++++.     +..|++||+.+++....+. .+...   .+..++|+|
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~sp  346 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFLD  346 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEECT
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEECC
Confidence            9988 77543332  35567899999 99999997754     5679999999988766543 22122   456899999


Q ss_pred             CCeEEEEEecCCcEEEEEecCCC
Q 019482          299 TQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ||+++++++.||.++||.++...
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~  369 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKG  369 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSS
T ss_pred             CCeEEEEecCCCccEEEEEcCCC
Confidence            99999999999999999987543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.95  E-value=1.3e-24  Score=183.30  Aligned_cols=280  Identities=11%  Similarity=0.104  Sum_probs=187.7

Q ss_pred             cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC----CCEEEEEecCc
Q 019482           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN----GGCKLFEVYGG   95 (340)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----~~i~iw~~~~~   95 (340)
                      ..+..|+...  +.++.|.+|.++.....+.    .....  +...+..++|+|+|++|++++.+    +.+.+|+++..
T Consensus        14 ~~~~vg~y~~--~~~~~i~~~~~d~~~g~~~----~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~   85 (361)
T 3scy_A           14 LTMLVGTYTS--GNSKGIYTFRFNEETGESL----PLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE   85 (361)
T ss_dssp             EEEEEEECCS--SSCCEEEEEEEETTTCCEE----EEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT
T ss_pred             eEEEEEeccC--CCCCCEEEEEEeCCCCCEE----Eeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC
Confidence            3445555432  3567899999987654431    11122  66788899999999999998875    78999999763


Q ss_pred             --eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCceeeccc--------------cCcccee
Q 019482           96 --ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEP--------------KAHKSVL  158 (340)
Q Consensus        96 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~--------------~~~~~i~  158 (340)
                        +.. .+....    .+...+..+++  ++++|++++ .++.|.+|++.....+....              .+...+.
T Consensus        86 ~g~~~-~~~~~~----~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~  158 (361)
T 3scy_A           86 KGTLH-LLNTQK----TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH  158 (361)
T ss_dssp             TTEEE-EEEEEE----CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE
T ss_pred             CCcEE-EeeEec----cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce
Confidence              321 111110    12345667777  777776665 57899999997543332211              0112357


Q ss_pred             EEEecCCCCeEEEee-CCCeEEEEEccCCee------E------EEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          159 DMDFSLDSEFLATTS-TDGSARIWKTEDGVA------W------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      +++|+|+|+++++++ .++.|++|++.....      +      ..........+..++|+|+|+.+    .++...++.
T Consensus       159 ~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l----~v~~~~~~~  234 (361)
T 3scy_A          159 CVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA----YLINEIGGT  234 (361)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE----EEEETTTCE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE----EEEcCCCCe
Confidence            899999999766555 578999999875431      1      22222334467899999999862    344457899


Q ss_pred             EEEEECCCCcEE--eeeec---cCCCeeEEEECCCCCEEEEeeCC--CcEEEEecc--CceE--eecccccccccceeeE
Q 019482          226 LAVYDISTWNKI--GHKRL---LRKPASVLSISLDGKYLAMGSKD--GDICVVDVK--KMEI--NHWSKRLHLGTSIALV  294 (340)
Q Consensus       226 i~i~d~~~~~~~--~~~~~---~~~~i~~~~~s~~~~~l~~~~~d--g~i~i~d~~--~~~~--~~~~~~~~~~~~i~~~  294 (340)
                      |.+||+.+++..  .....   +......++|+|||++|+++..+  +.|.+|++.  +++.  +..+.  . +..+..+
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~~~~~  311 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIHPRNF  311 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSCCCEE
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCCCceE
Confidence            999999876542  22222   22346799999999999777654  889999995  3442  22222  1 3568899


Q ss_pred             EEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482          295 EFCPTQRVVLTAS-KEWGAMITKLTVPA  321 (340)
Q Consensus       295 ~~~~~~~~l~~~~-~dg~i~iw~~~~~~  321 (340)
                      +|+|||++|++++ .++.+.+|+++...
T Consensus       312 ~~spdg~~l~~~~~~~~~v~v~~~d~~~  339 (361)
T 3scy_A          312 IITPNGKYLLVACRDTNVIQIFERDQAT  339 (361)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred             EECCCCCEEEEEECCCCCEEEEEEECCC
Confidence            9999999888877 67899999887543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=2.3e-24  Score=180.25  Aligned_cols=274  Identities=13%  Similarity=0.147  Sum_probs=179.7

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ...+.+++|+|+   +..+++++.     .++.+.+|+++......    .....+..+. .+..++|+|+|++|++++.
T Consensus        37 ~~~~~~~~~spd---g~~l~~~~~-----~~~~v~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~  103 (343)
T 1ri6_A           37 PGQVQPMVVSPD---KRYLYVGVR-----PEFRVLAYRIAPDDGAL----TFAAESALPG-SLTHISTDHQGQFVFVGSY  103 (343)
T ss_dssp             SSCCCCEEECTT---SSEEEEEET-----TTTEEEEEEECTTTCCE----EEEEEEECSS-CCSEEEECTTSSEEEEEET
T ss_pred             CCCCceEEECCC---CCEEEEeec-----CCCeEEEEEecCCCCce----eeccccccCC-CCcEEEEcCCCCEEEEEec
Confidence            456778999994   344444332     23679999998543322    1222344333 7899999999998877665


Q ss_pred             -CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCC-Cceee----cccc-Ccc
Q 019482           84 -NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS-LRIIL----DEPK-AHK  155 (340)
Q Consensus        84 -d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~-~~~~~----~~~~-~~~  155 (340)
                       ++.|.+||+..+........     ......+.+++|+|+++++++++ .++.|.+||+.+ ++...    .... ...
T Consensus       104 ~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  178 (343)
T 1ri6_A          104 NAGNVSVTRLEDGLPVGVVDV-----VEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA  178 (343)
T ss_dssp             TTTEEEEEEEETTEEEEEEEE-----ECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC
T ss_pred             CCCeEEEEECCCCcccccccc-----ccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC
Confidence             78899999953321111111     11334588899999999888776 889999999987 54321    1222 234


Q ss_pred             ceeEEEecCCCCeEEEee-CCCeEEEEEccC--Cee--EEEee---cCC--CCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          156 SVLDMDFSLDSEFLATTS-TDGSARIWKTED--GVA--WTFLT---RNS--DEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~--~~~--~~~~~---~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      .+..++|+|+++++++++ .++.+.+|+++.  ++.  .....   ..+  ...+..++|+|+++.+    +++...++.
T Consensus       179 ~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l----~v~~~~~~~  254 (343)
T 1ri6_A          179 GPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL----YACDRTASL  254 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE----EEEETTTTE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE----EEEecCCCE
Confidence            678899999999765554 789999999953  332  22222   111  1246689999999863    345667899


Q ss_pred             EEEEECC--C--CcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEec--cCceEeecccccccccceeeEEEec
Q 019482          226 LAVYDIS--T--WNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDV--KKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       226 i~i~d~~--~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      |.+||+.  +  .+.+..+..... +..++|+|+|++|++++ .++.|.+|++  .+++..... ....+....+++|.|
T Consensus       255 i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~-~~~~g~~p~~i~~~~  332 (343)
T 1ri6_A          255 ITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG-RYAVGQGPMWVVVNA  332 (343)
T ss_dssp             EEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE-EEECSSSCCEEEEEE
T ss_pred             EEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc-ccccCCCCeeEEEEc
Confidence            9999998  3  234444444443 88999999999888887 5799999955  455433221 112134577888887


Q ss_pred             CCe
Q 019482          299 TQR  301 (340)
Q Consensus       299 ~~~  301 (340)
                      +.+
T Consensus       333 ~~~  335 (343)
T 1ri6_A          333 HEG  335 (343)
T ss_dssp             EC-
T ss_pred             ccC
Confidence            643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.95  E-value=4.5e-25  Score=210.09  Aligned_cols=281  Identities=14%  Similarity=0.098  Sum_probs=211.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ...+.++.|+++    .+++.+.      .++.+.+|.++..+...       ..+..|. .+...+|+|+|++|+++. 
T Consensus       203 ~~~v~~~~~s~d----~l~~~~~------~dg~~~l~~~~~~g~~~-------~~l~~~~-~~~~~~~SpDG~~la~~~-  263 (1045)
T 1k32_A          203 STHVSSPVIVGH----RIYFITD------IDGFGQIYSTDLDGKDL-------RKHTSFT-DYYPRHLNTDGRRILFSK-  263 (1045)
T ss_dssp             SSCCEEEEEETT----EEEEEEC------TTSSCEEEEEETTSCSC-------EECCCCC-SSCEEEEEESSSCEEEEE-
T ss_pred             CCcccceEEeCC----EEEEEEe------ccCceEEEEEeCCCCcc-------eEecCCC-CcceeeEcCCCCEEEEEe-
Confidence            456788899873    3444433      34568999987544322       2234444 467889999999998874 


Q ss_pred             CCCEEEEEecCceeeeeecccc----CCCCCCCCCeEEEEEe-cCCCeEEEccCCCcEEEEeCCCCceeeccccCcc-ce
Q 019482           84 NGGCKLFEVYGGATDINLLAKK----MPPLQDAGPQKCLSFS-VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK-SV  157 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~-~i  157 (340)
                      ++.|++|++...... .+....    .....+...+.+++|+ |||++|++++ ++.|.+|++.+++... +..+.. .+
T Consensus       264 ~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~  340 (1045)
T 1k32_A          264 GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRY  340 (1045)
T ss_dssp             TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEE
T ss_pred             CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceE
Confidence            788999998443322 221100    0001134468999999 9999998887 7899999998776543 555666 89


Q ss_pred             eEEEecCCCCeEEEeeCCCeEE-EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          158 LDMDFSLDSEFLATTSTDGSAR-IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d~~v~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      ..++|+ ||+.|++++.+..+. +||+..++.. .+. .+...+..++|+|+|+.     ++.++.++.|++||+.+++.
T Consensus       341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~-~~~~~~~~~~~SpDG~~-----la~~~~~~~v~~~d~~tg~~  412 (1045)
T 1k32_A          341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE-ENLGNVFAMGVDRNGKF-----AVVANDRFEIMTVDLETGKP  412 (1045)
T ss_dssp             EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC-CCCCSEEEEEECTTSSE-----EEEEETTSEEEEEETTTCCE
T ss_pred             EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec-CCccceeeeEECCCCCE-----EEEECCCCeEEEEECCCCce
Confidence            999999 999999999888898 9999876654 344 45567999999999997     66777889999999999988


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCC----------cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDG----------DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  306 (340)
                      ......+...+..++|+|||++|++++.++          .|++||+.+++... + ..| ...+..++|+|||++|+++
T Consensus       413 ~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~-l-~~~-~~~~~~~~~spdG~~l~~~  489 (1045)
T 1k32_A          413 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-A-TTE-NSHDYAPAFDADSKNLYYL  489 (1045)
T ss_dssp             EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-C-SCS-SSBEEEEEECTTSCEEEEE
T ss_pred             EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEE-e-eCC-CcccCCceEcCCCCEEEEE
Confidence            777768888899999999999999887654          89999999887433 3 233 4568889999999999999


Q ss_pred             ecCCcEEEEEe
Q 019482          307 SKEWGAMITKL  317 (340)
Q Consensus       307 ~~dg~i~iw~~  317 (340)
                      +.++...+|+.
T Consensus       490 s~~~~~~~~~~  500 (1045)
T 1k32_A          490 SYRSLDPSPDR  500 (1045)
T ss_dssp             ESCCCCCEECS
T ss_pred             ecccCCcCcch
Confidence            98888777764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=2.7e-24  Score=180.59  Aligned_cols=240  Identities=8%  Similarity=-0.005  Sum_probs=186.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEec-------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTT-------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDG  134 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg  134 (340)
                      ...+..++|+|+|+++++++.       ++.|.+||..+++....+..        ...+..++|+|++++++ +...++
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~v~~~~~~  111 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--------DLKPFGATINNTTQTLWFGNTVNS  111 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--------SSCCCSEEEETTTTEEEEEETTTT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--------CCCcceEEECCCCCEEEEEecCCC
Confidence            356889999999998888774       45799999998876555432        23467899999999554 455679


Q ss_pred             cEEEEeCCCCceeeccccCcc---------ceeEEEecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeE
Q 019482          135 HLRIMHWPSLRIILDEPKAHK---------SVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~  203 (340)
                      .|.+||+.+++....+..+..         .+.+++|+|+++++++++  .++.|.+||.++++.+..+.. ....+..+
T Consensus       112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~  190 (353)
T 3vgz_A          112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGL  190 (353)
T ss_dssp             EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCC
T ss_pred             EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceE
Confidence            999999999887666554332         268899999999877766  478999999999998887752 23358899


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec----cCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceE
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI  278 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~  278 (340)
                      +|+|+++.     ++.+..++.|.+||..+++.+..+..    +...+..++|+|+|+++++++. ++.|.+||+.+++.
T Consensus       191 ~~s~dg~~-----l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          191 ALDSEGKR-----LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             EEETTTTE-----EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred             EECCCCCE-----EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            99999997     56667789999999999988776654    3445778999999998877765 48999999999888


Q ss_pred             eecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEecCC
Q 019482          279 NHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLTVP  320 (340)
Q Consensus       279 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~  320 (340)
                      ...+....    ...++|+|++++++.+ ..++.|.+|+....
T Consensus       266 ~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          266 LAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            77664322    3679999999865554 47899999998643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=3.5e-25  Score=203.02  Aligned_cols=239  Identities=14%  Similarity=0.050  Sum_probs=172.1

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ..|.+++|+|| ..++.+. ++.+++||+.+++.....        .+...+.+++|+|||++|+++ .++.|++||+.+
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~--------~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF--------DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE--------CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc--------CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence            56999999999 6666554 588999999887643322        134567789999999999985 689999999988


Q ss_pred             -----CceeeccccCccc--------------eeEEEecCCCCeEEEee-------------------------------
Q 019482          144 -----LRIILDEPKAHKS--------------VLDMDFSLDSEFLATTS-------------------------------  173 (340)
Q Consensus       144 -----~~~~~~~~~~~~~--------------i~~~~~~~~~~~l~~~~-------------------------------  173 (340)
                           ++.......+...              +.++.|+|||++|++++                               
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~  230 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT  230 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence                 7665444333332              48899999999999987                               


Q ss_pred             --CCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEEEEecCCc-----ceEEEEECCCCcEEeeee-c-c
Q 019482          174 --TDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQRGDK-----ALLAVYDISTWNKIGHKR-L-L  243 (340)
Q Consensus       174 --~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~-~-~  243 (340)
                        .+..|++||+.+++....... .+...+..++|+|||+.+     +.++.+     ..|.+||+.+++....+. . .
T Consensus       231 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l-----~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~  305 (706)
T 2z3z_A          231 PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENIL-----YVAEVNRAQNECKVNAYDAETGRFVRTLFVETD  305 (706)
T ss_dssp             CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEE-----EEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC
T ss_pred             CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEE-----EEEEeCCCCCeeEEEEEECCCCceeeEEEEccC
Confidence              446899999998876544332 344568999999999973     332223     489999999984333332 1 2


Q ss_pred             CC---CeeEEEECC--CCCEEEEeeCCCcEEEEecc-CceEeecccccccccceee-EEEecCCeEEEEEecC-C--cEE
Q 019482          244 RK---PASVLSISL--DGKYLAMGSKDGDICVVDVK-KMEINHWSKRLHLGTSIAL-VEFCPTQRVVLTASKE-W--GAM  313 (340)
Q Consensus       244 ~~---~i~~~~~s~--~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~d-g--~i~  313 (340)
                      ..   .+..+.|+|  ||+++++++.|+.++||++. +++.+..+. .+ ...+.. ++|+||++.|+.++.+ +  .+.
T Consensus       306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~  383 (706)
T 2z3z_A          306 KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT-KG-EWEVTNFAGFDPKGTRLYFESTEASPLERH  383 (706)
T ss_dssp             SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC-CS-SSCEEEEEEECTTSSEEEEEESSSCTTCBE
T ss_pred             CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC-CC-CeEEEeeeEEcCCCCEEEEEecCCCCceEE
Confidence            21   246789999  99999999999999999876 455554443 23 345766 7999999877665554 4  366


Q ss_pred             EEEecCC
Q 019482          314 ITKLTVP  320 (340)
Q Consensus       314 iw~~~~~  320 (340)
                      ||.++..
T Consensus       384 l~~~d~~  390 (706)
T 2z3z_A          384 FYCIDIK  390 (706)
T ss_dssp             EEEEETT
T ss_pred             EEEEEcC
Confidence            7766543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.94  E-value=1.6e-24  Score=194.30  Aligned_cols=269  Identities=11%  Similarity=0.021  Sum_probs=190.4

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEEEEec
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~   83 (340)
                      .+|++++|+|   +++.+|+++.     .++.++||.++        .... ..+..|. ..+..++|+|| +.+++++.
T Consensus        22 ~~~~~~~~~~---DG~~la~~s~-----~~g~~~lw~~~--------~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~   83 (582)
T 3o4h_A           22 VEKYSLQGVV---DGDKLLVVGF-----SEGSVNAYLYD--------GGET-VKLNREPINSVLDPHYGVG-RVILVRDV   83 (582)
T ss_dssp             SCEEEEEEEE---TTTEEEEEEE-----ETTEEEEEEEE--------TTEE-EECCSSCCSEECEECTTCS-EEEEEEEC
T ss_pred             cchheeecCC---CCCeEEEEEc-----cCCceeEEEEc--------CCCc-EeeecccccccccccCCCC-eEEEEecc
Confidence            5799999999   4556665542     35679999974        2222 2344444 68999999999 77776665


Q ss_pred             ---CCCEEEEEecC--ceeeeeeccccCCCCCCCCCeEEEEEecCCCe-EEEccCCCcEEEEeCCCCceeeccccCccce
Q 019482           84 ---NGGCKLFEVYG--GATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEPKAHKSV  157 (340)
Q Consensus        84 ---d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i  157 (340)
                         +...++|.+..  ......+.        ....+...+|+|+++. +++...++.+.+||+.+++..... .+..  
T Consensus        84 ~~g~~~~~l~~~~~~~~g~~~~l~--------~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~-~~~~--  152 (582)
T 3o4h_A           84 SKGAEQHALFKVNTSRPGEEQRLE--------AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELA-RLPG--  152 (582)
T ss_dssp             STTSCCEEEEEEETTSTTCCEECT--------TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEE-EESS--
T ss_pred             CCCCcceEEEEEeccCCCcccccc--------CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEee-cCCC--
Confidence               45567776654  22222221        1223456788998863 333334445669999887655433 2322  


Q ss_pred             eEEEecCCCCeEEEeeCC----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEEC
Q 019482          158 LDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDI  231 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~  231 (340)
                      .+++|+|||++|++++.+    ..|++||+.+++.. .+. .+...+..++|+|||+.     ++++..++  .|++||+
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~-----l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKV-----TAGLETAREARLVTVDP  225 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCE-----EEEEECSSCEEEEEECT
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCE-----EEEccCCCeeEEEEEcC
Confidence            789999999999988877    78999999888765 444 34567899999999997     44556666  8999999


Q ss_pred             CCCcEEeeeeccCCCeeEEE--------ECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482          232 STWNKIGHKRLLRKPASVLS--------ISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (340)
Q Consensus       232 ~~~~~~~~~~~~~~~i~~~~--------~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  303 (340)
                      .+++.. .+..+...+..+.        |+|||.++++++.|+.+++|++  ++....    . ...+.+++|+ +++++
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~----~-~~~v~~~~~s-dg~~l  296 (582)
T 3o4h_A          226 RDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA----P-QGNHGRVVLW-RGKLV  296 (582)
T ss_dssp             TTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC----C-SSEEEEEEEE-TTEEE
T ss_pred             CCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc----C-CCceEEEEec-CCEEE
Confidence            998876 6666666666666        9999999999999999999999  665542    1 3568899999 99999


Q ss_pred             EEEecCCc-EEEEEec
Q 019482          304 LTASKEWG-AMITKLT  318 (340)
Q Consensus       304 ~~~~~dg~-i~iw~~~  318 (340)
                      ++++.+.. -.+|.++
T Consensus       297 ~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          297 TSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEEEETTEEEEEEEET
T ss_pred             EEEcCCCCCCeEEEEc
Confidence            98887744 3444444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=3.3e-24  Score=179.73  Aligned_cols=233  Identities=12%  Similarity=0.047  Sum_probs=175.9

Q ss_pred             EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCCce
Q 019482           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRI  146 (340)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~  146 (340)
                      .+++++++.++++++.++.|++||+.+++....+...      ....+..++|+|++++++ +...++.|.+||+.+++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC------CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE
Confidence            4567888889999999999999999988765554321      112567899999998654 555789999999998887


Q ss_pred             eeccccCc------cceeEEEecCCCCeEEEeeCC------------CeEEEEEccCCee---EEEeecCCCCceeeEEE
Q 019482          147 ILDEPKAH------KSVLDMDFSLDSEFLATTSTD------------GSARIWKTEDGVA---WTFLTRNSDEKIELCRF  205 (340)
Q Consensus       147 ~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d------------~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~  205 (340)
                      ...+....      ..+..++|+|+|+++++++.+            +.|.+||+.+++.   +..+.  ....+.+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~  155 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRA  155 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEE
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeE
Confidence            65554322      237889999999999988865            8999999988543   33333  2235889999


Q ss_pred             ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----------------------------------------
Q 019482          206 SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----------------------------------------  244 (340)
Q Consensus       206 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------------------------------------  244 (340)
                      +|+++ ++    + .+  +.|.+||+.+++.+..+....                                         
T Consensus       156 s~dg~-l~----~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  227 (349)
T 1jmx_B          156 ADDGS-LY----V-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA  227 (349)
T ss_dssp             CTTSC-EE----E-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred             CCCCc-EE----E-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc
Confidence            99998 32    2 23  339999999887665543221                                         


Q ss_pred             ---------------------------CCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482          245 ---------------------------KPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       245 ---------------------------~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                                                 ..+..++|+| ++++++++  ++.|.+||+.+++....+..   ...+.+++|
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~  302 (349)
T 1jmx_B          228 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---DHTYYCVAF  302 (349)
T ss_dssp             CCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEE
T ss_pred             ccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---CCCccceEE
Confidence                                       1345677889 99999988  88999999999988776543   235789999


Q ss_pred             ecCCeEEEEEecCCcEEEEEecCCC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +|++++|++++.++.|.+|++....
T Consensus       303 s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          303 DKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             CSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             CCCCCEEEEecCCCeEEEEeccccc
Confidence            9999988888889999999986543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.93  E-value=1.7e-24  Score=186.34  Aligned_cols=206  Identities=13%  Similarity=0.071  Sum_probs=155.3

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee-------eec-cccCCCCCCCCCeEEEEEecCCCeEE----Ec
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI-------NLL-AKKMPPLQDAGPQKCLSFSVDGSRFA----AG  130 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~-------~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~----~~  130 (340)
                      ...++.+++++++.++++++.++ +++|+........       ... ......+.+...|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34588999999999999999988 9998875321100       000 00001123556799999999999999    89


Q ss_pred             cCCCcEEEEeCCCC--------ce---eeccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCC
Q 019482          131 GVDGHLRIMHWPSL--------RI---ILDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE  198 (340)
Q Consensus       131 ~~dg~i~~~d~~~~--------~~---~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~  198 (340)
                      +.|+.|++||++++        +.   ...+.+|...|.+++|+|+ +++|++++.|++|++||+++++.+..... +..
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~~~  193 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-STV  193 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-GGG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-CCC
Confidence            99999999998754        11   3344557779999999997 78999999999999999999876655543 456


Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-------CCeeEEEECCCCCEEEEe-eCCC----
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-------KPASVLSISLDGKYLAMG-SKDG----  266 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~-~~dg----  266 (340)
                      .+.+++|+|+|++     +++++.|+.|++||.+ ++....+..+.       ..+.++.|++++.++++. +.||    
T Consensus       194 ~v~~v~wspdg~~-----lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          194 AVTSVCWSPKGKQ-----LAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             CEEEEEECTTSSC-----EEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             ceeEEEEcCCCCE-----EEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            7999999999998     7889999999999998 55544444332       278999999988877553 3343    


Q ss_pred             --cEEEEeccCc
Q 019482          267 --DICVVDVKKM  276 (340)
Q Consensus       267 --~i~i~d~~~~  276 (340)
                        .+++|++...
T Consensus       268 ~~~v~i~~l~~~  279 (434)
T 2oit_A          268 SPDVVMALLPKK  279 (434)
T ss_dssp             CCEEEEEECCCT
T ss_pred             CCceEEEEeccC
Confidence              3899999764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=5.6e-24  Score=202.58  Aligned_cols=240  Identities=12%  Similarity=0.054  Sum_probs=183.7

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      .+.+|...+.++.|+++ ..+++++.++.+.||.+.... ....+.        +...+...+|+|||++|+++ .++.|
T Consensus       198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~--------~~~~~~~~~~SpDG~~la~~-~~~~i  267 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT--------SFTDYYPRHLNTDGRRILFS-KGGSI  267 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC--------CCCSSCEEEEEESSSCEEEE-ETTEE
T ss_pred             ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec--------CCCCcceeeEcCCCCEEEEE-eCCEE
Confidence            45789999999999988 566677888999999886422 222221        12345677999999999887 48999


Q ss_pred             EEEeCCCCceeecccc-----------CccceeEEEec-CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEE
Q 019482          137 RIMHWPSLRIILDEPK-----------AHKSVLDMDFS-LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~-----------~~~~i~~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~  204 (340)
                      ++||+.... +..+..           +...+.+++|+ |||++|++++ ++.+++|++..++... +..+....+..++
T Consensus       268 ~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~  344 (1045)
T 1k32_A          268 YIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRG  344 (1045)
T ss_dssp             EEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEEC
T ss_pred             EEecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeee
Confidence            999985433 333333           22368899999 9999999988 7899999998776543 4333322789999


Q ss_pred             EccCCCcceEEEEEecCCcceEE-EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          205 FSKDGTKPFLFCTVQRGDKALLA-VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      |+ +|+.     ++..+.+..+. +||+.+++... +..+...+..++|+|||++|++++.++.|++||+.+++..... 
T Consensus       345 ~s-dg~~-----l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-  416 (1045)
T 1k32_A          345 GD-TKVA-----FIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-  416 (1045)
T ss_dssp             SS-SEEE-----EEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             Ec-CCCe-----EEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-
Confidence            99 9886     44445578888 99998876543 3366678999999999999999999999999999998876654 


Q ss_pred             ccccccceeeEEEecCCeEEEEEecCC----------cEEEEEecC
Q 019482          284 RLHLGTSIALVEFCPTQRVVLTASKEW----------GAMITKLTV  319 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~iw~~~~  319 (340)
                      ..| ...+.+++|+|||++|++++.++          .|++|++..
T Consensus       417 ~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~  461 (1045)
T 1k32_A          417 RSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG  461 (1045)
T ss_dssp             ECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred             cCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence            244 56789999999999999887754          899999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=2.5e-24  Score=197.92  Aligned_cols=288  Identities=11%  Similarity=0.028  Sum_probs=188.0

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCc---ccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRA---SSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~---~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      .|.+++|+|   ++..++++.....   ...++.+.+|+++....      .......+|...+..++|+|||+.||.++
T Consensus        62 ~v~~~~~Sp---Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~~~~SPdG~~la~~~  132 (723)
T 1xfd_A           62 RAIRYEISP---DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP------QSLDPPEVSNAKLQYAGWGPKGQQLIFIF  132 (723)
T ss_dssp             TCSEEEECT---TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC------EECCCTTCCSCCCSBCCBCSSTTCEEEEE
T ss_pred             ccceEEECC---CCCEEEEEecCccceeecceeeEEEEECCCCce------EeccCCccccccccccEECCCCCEEEEEE
Confidence            488999999   4456666543221   12346788888763321      00111234555689999999999999988


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCC--C---------CCCCCeEEEEEecCCCeEEEccCCC-----------------
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPP--L---------QDAGPQKCLSFSVDGSRFAAGGVDG-----------------  134 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~--~---------~~~~~v~~~~~~~~~~~l~~~~~dg-----------------  134 (340)
                      . +.|++||+.+++............  .         +..+.+.+++|+|||++|++++.|+                 
T Consensus       133 ~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~  211 (723)
T 1xfd_A          133 E-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP  211 (723)
T ss_dssp             T-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             C-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCC
Confidence            6 679999998876433222111000  0         0012347899999999999887543                 


Q ss_pred             -----------------cEEEEeCCCCceeeccccC------ccceeEEEecCCCCeEEEeeC----CCeEEEEEccCCe
Q 019482          135 -----------------HLRIMHWPSLRIILDEPKA------HKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV  187 (340)
Q Consensus       135 -----------------~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~  187 (340)
                                       .|++||+.+++....+..+      ...+..++|+|||+++++.+.    +..|++||+.+++
T Consensus       212 ~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~  291 (723)
T 1xfd_A          212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (723)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             cceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence                             7999999888754444433      457899999999998877643    3579999999988


Q ss_pred             eEEEeecCCCCce----eeEEEccCCCcceEEEEEecCCcc------eEEEEE-CCCCcE--EeeeeccCCCeeE-EEEC
Q 019482          188 AWTFLTRNSDEKI----ELCRFSKDGTKPFLFCTVQRGDKA------LLAVYD-ISTWNK--IGHKRLLRKPASV-LSIS  253 (340)
Q Consensus       188 ~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~~~~~~~d~------~i~i~d-~~~~~~--~~~~~~~~~~i~~-~~~s  253 (340)
                      ....+...+...+    ..++|+|||+.+++   .+...++      .|.+|| ...++.  ...+......+.. ++|+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~---~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s  368 (723)
T 1xfd_A          292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFF---IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD  368 (723)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECTTSCSEEE---EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE
T ss_pred             ceEEEEeccCCEEeccCCCceEcCCCCeEEE---EEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc
Confidence            7666554433333    38899999997421   2234455      677788 344441  3344433344544 6999


Q ss_pred             CCCCEEEEeeCC---CcEEEEeccCce--Eeeccccc--ccccceeeEEEecCCeEEEEEe
Q 019482          254 LDGKYLAMGSKD---GDICVVDVKKME--INHWSKRL--HLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       254 ~~~~~l~~~~~d---g~i~i~d~~~~~--~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      |||+.|+..+.+   +.+++|++....  ....+...  + ...+..++|+|||++|+...
T Consensus       369 pdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          369 EKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE-NCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             TTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS-SCCCCEEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC-CCCeEEEEECCCCCEEEEEc
Confidence            999999876554   789999986432  22222211  3 45688999999998877653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.93  E-value=3.2e-23  Score=174.93  Aligned_cols=270  Identities=9%  Similarity=0.045  Sum_probs=181.6

Q ss_pred             CceEEEEeCCCCCCcccCCeeeEEEe-cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEec-CceeeeeeccccCCCCCCC
Q 019482           35 SVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY-GGATDINLLAKKMPPLQDA  112 (340)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~~~~~~~~  112 (340)
                      +.|.+|.++.....+.  ..  .... ++...+..++|+|+|++|++++.+ .|.+|++. +++....... .     ..
T Consensus        14 ~~i~~~~~d~~~g~l~--~~--~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-~-----~~   82 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCK--LI--KRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-P-----IG   82 (365)
T ss_dssp             CEEEEEEEETTTTEEE--EE--EEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-E-----CC
T ss_pred             CcEEEEEEECCCCCEE--Ee--eEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-e-----cC
Confidence            4588888876544331  11  1111 234578899999999999998888 89999997 6654322111 0     01


Q ss_pred             CCeEEEEEecCCCe--EEEcc-------------CCCcEEEEeCC-CCceeeccc----cCccceeEEEecCCCCeEEEe
Q 019482          113 GPQKCLSFSVDGSR--FAAGG-------------VDGHLRIMHWP-SLRIILDEP----KAHKSVLDMDFSLDSEFLATT  172 (340)
Q Consensus       113 ~~v~~~~~~~~~~~--l~~~~-------------~dg~i~~~d~~-~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~  172 (340)
                      +.+.+++|+|+|++  ++++.             .++.+.+|++. +++....+.    .+...+.+++|+|||++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            23456899999994  55554             68999999997 454432222    133578999999999988876


Q ss_pred             eC-CCeEEEEEcc-CCeeE--EEeecC-CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--CCcEE---eeeec
Q 019482          173 ST-DGSARIWKTE-DGVAW--TFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNKI---GHKRL  242 (340)
Q Consensus       173 ~~-d~~v~iwd~~-~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~---~~~~~  242 (340)
                      +. ++.|++||+. +++..  ..+... +...+..++|+|+|+.+    .++...++.|.+|+++  +++..   ..+..
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l----~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~  238 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL----YALMEAGNRICEYVIDPATHMPVYTHHSFPL  238 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEE----EEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence            64 6799999998 67643  223211 23458999999999963    2334457899999765  45532   12221


Q ss_pred             c-------CC------CeeEEE-ECCCCCEEEEeeCCC------cEEEEecc-CceEeecc--cccccccceeeEEEec-
Q 019482          243 L-------RK------PASVLS-ISLDGKYLAMGSKDG------DICVVDVK-KMEINHWS--KRLHLGTSIALVEFCP-  298 (340)
Q Consensus       243 ~-------~~------~i~~~~-~s~~~~~l~~~~~dg------~i~i~d~~-~~~~~~~~--~~~~~~~~i~~~~~~~-  298 (340)
                      .       ..      .+..++ |+|||++|++++.+.      .|.+|++. +++.....  ...+ ...+..++|+| 
T Consensus       239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~  317 (365)
T 1jof_A          239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPC  317 (365)
T ss_dssp             SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEEC
T ss_pred             CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC-CCCcccceecCC
Confidence            1       11      478899 999999988776432      79999996 55544321  1112 34577899999 


Q ss_pred             --CCeEEEEEecC-CcEEEEEecCC
Q 019482          299 --TQRVVLTASKE-WGAMITKLTVP  320 (340)
Q Consensus       299 --~~~~l~~~~~d-g~i~iw~~~~~  320 (340)
                        ||++|++++.+ +.|.+|+++..
T Consensus       318 ~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          318 PWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CcCCCEEEEEEcCCCeEEEEEEchh
Confidence              89999988864 89999999754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=9.4e-24  Score=175.83  Aligned_cols=233  Identities=9%  Similarity=-0.012  Sum_probs=170.1

Q ss_pred             EEcCCCCe-EEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCce-
Q 019482           70 AVNPSGDD-FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRI-  146 (340)
Q Consensus        70 ~~~~~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~-  146 (340)
                      .|.+++.+ +++.+.++.|.+||+.+++.......       +...+ .++|+|+++++++++. ++.|.+||+.+++. 
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL-------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC-------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc-------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            45565554 66777889999999998876554432       23455 9999999997666655 88999999998886 


Q ss_pred             eeccccCccceeEEEecCCCCeEEEeeCCC---eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          147 ILDEPKAHKSVLDMDFSLDSEFLATTSTDG---SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      ......+..+..+++|+|++++++++..++   .|.+||+++++.+..+...  ..+..++|+|+|+++    +++...+
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg~~l----~~~~~~~  149 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNGNGL----ILIDRSS  149 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTSSCE----EEEEETT
T ss_pred             EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCCCCEE----EEEecCC
Confidence            555544444554499999999998655553   8999999999988877643  357899999999863    3344455


Q ss_pred             ce-EEEEECCCCcEE----eeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceE---eecccccccccceeeE
Q 019482          224 AL-LAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEI---NHWSKRLHLGTSIALV  294 (340)
Q Consensus       224 ~~-i~i~d~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~~~~~i~~~  294 (340)
                      +. |.+|++.....+    ............++|+|+|+++++++ .++.|++||+.+++.   +..+..   ...+..+
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~  226 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTI  226 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCE
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceE
Confidence            66 999998864432    12223345678999999999766554 688999999998876   554432   3578899


Q ss_pred             EEecCCeEEEEEe-cCCcEEEEEecC
Q 019482          295 EFCPTQRVVLTAS-KEWGAMITKLTV  319 (340)
Q Consensus       295 ~~~~~~~~l~~~~-~dg~i~iw~~~~  319 (340)
                      +|+|||++|+.++ .++.|.+|++..
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCC
Confidence            9999999766554 578899999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=3.2e-24  Score=175.36  Aligned_cols=221  Identities=14%  Similarity=0.094  Sum_probs=162.9

Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC-CceeeccccCc-ccee
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS-LRIILDEPKAH-KSVL  158 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~~~-~~i~  158 (340)
                      ++.++.|++||+.+++.....        .|...+.+++|+|++++|++++ ++.|++||+.+ ++.......+. ..+.
T Consensus        18 ~~~~~~i~~~d~~~~~~~~~~--------~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMRVVW--------QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNN   88 (297)
T ss_dssp             CCCCEEEEEEETTTTEEEEEE--------EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred             CCcceeEEEEeCCCCceeeec--------cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccccc
Confidence            456789999999887754322        2567899999999999999876 78999999998 77665554443 5789


Q ss_pred             EEEecCCCCeEEEee--CCCeEEEEEc--cCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--
Q 019482          159 DMDFSLDSEFLATTS--TDGSARIWKT--EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--  232 (340)
Q Consensus       159 ~~~~~~~~~~l~~~~--~d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--  232 (340)
                      +++|+|++++|++++  .++...||.+  .+++ ...+...  ..+..++|+|+++.+    ++++..++.+.+|+++  
T Consensus        89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~--~~~~~~~~spdg~~l----~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN--LPSYWHGWSPDGKSF----TYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS--SSEEEEEECTTSSEE----EEEEEETTEEEEEEEETT
T ss_pred             ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC--CCccceEECCCCCEE----EEEECCCCceEEEEEECC
Confidence            999999999999998  3345555554  4444 3334322  348899999999963    2355677888888853  


Q ss_pred             CCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEecc-CceEeecccccccccceeeEEEecCCeEEEEEecC-
Q 019482          233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-  309 (340)
Q Consensus       233 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  309 (340)
                      +++ ...+..+...+.++.|+|+|++|++++ .++.+++|++. .+.....+. .+ ...+..++|+|++++|++++.+ 
T Consensus       162 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~-~~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          162 SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DS-AYGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CC-SEEEEEEEECTTSSEEEEEEEET
T ss_pred             CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cC-CcccCCeEECCCCCEEEEEEcCC
Confidence            333 345566677899999999999888766 58899999886 333333332 33 4578999999999999988876 


Q ss_pred             ----------CcEEEEEecCC
Q 019482          310 ----------WGAMITKLTVP  320 (340)
Q Consensus       310 ----------g~i~iw~~~~~  320 (340)
                                +.+++|++...
T Consensus       239 ~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          239 DVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             TCCSCCSSEEEEEEEEETTSC
T ss_pred             CCCcccccCceEEEEEecCCC
Confidence                      45888887643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=2.7e-24  Score=192.75  Aligned_cols=231  Identities=13%  Similarity=0.030  Sum_probs=168.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEec-CCCEEEEEecCceeeeeeccccCCCCCCC-CCeEEEEEecCCCeEEEccC---CCcEE
Q 019482           63 EGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDA-GPQKCLSFSVDGSRFAAGGV---DGHLR  137 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~  137 (340)
                      ..+|++++|+|||++||+++. ||+++||++++++.. .+.       .+. ..+..++|+|| +.+++++.   +....
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt-------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~   91 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLN-------REPINSVLDPHYGVG-RVILVRDVSKGAEQHA   91 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECC-------SSCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eee-------cccccccccccCCCC-eEEEEeccCCCCcceE
Confidence            457999999999999998877 999999999766542 221       133 57899999999 77776654   45556


Q ss_pred             EEeCCC---CceeeccccCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          138 IMHWPS---LRIILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       138 ~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      +|.+..   +... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++...... ...   .+++|+|||+.  
T Consensus        92 l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~---~~~~~spDG~~--  163 (582)
T 3o4h_A           92 LFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG---FGFVSDIRGDL--  163 (582)
T ss_dssp             EEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS---CEEEEEEETTE--
T ss_pred             EEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC---ceEEECCCCCE--
Confidence            654432   2222 22222 23446688888764 3333344556699999887655443 222   78999999997  


Q ss_pred             EEEEEecCCc----ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC--cEEEEeccCceEeeccccccc
Q 019482          214 LFCTVQRGDK----ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWSKRLHL  287 (340)
Q Consensus       214 ~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~  287 (340)
                         ++.++.+    ..|++||+.+++.. .+..+...+..++|||||++|+++..++  .|++||+.+++.. .+ ..+ 
T Consensus       164 ---la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~-  236 (582)
T 3o4h_A          164 ---IAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-ELP-  236 (582)
T ss_dssp             ---EEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-CCS-
T ss_pred             ---EEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCC-
Confidence               4434434    78999999988764 5667777889999999999999888888  8999999988876 33 334 


Q ss_pred             ccceeeEE--------EecCCeEEEEEecCCcEEEEEe
Q 019482          288 GTSIALVE--------FCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       288 ~~~i~~~~--------~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      ...+..++        |+|||.++++++.|+.+++|++
T Consensus       237 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          237 SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            44566667        9999999999999999999998

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.92  E-value=3.7e-22  Score=167.36  Aligned_cols=258  Identities=12%  Similarity=0.079  Sum_probs=169.7

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe-cC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN   84 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d   84 (340)
                      .+..++|+|+   +.+++.+.    .+.++.|.+|+++...      ......+..+...+..++|+|+|++|++++ .+
T Consensus        41 ~p~~~a~spd---g~l~~~~~----~~~~~~v~~~~~~~g~------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~  107 (347)
T 3hfq_A           41 NPTYLALSAK---DCLYSVDK----EDDEGGIAAWQIDGQT------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK  107 (347)
T ss_dssp             CCCCEEECTT---CEEEEEEE----ETTEEEEEEEEEETTE------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTT
T ss_pred             CcceEEEccC---CeEEEEEe----cCCCceEEEEEecCCc------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC
Confidence            3456788883   33444332    1235679999885221      112233445677899999999999998887 67


Q ss_pred             CCEEEEEecCc-ee--eeeeccccCC--CCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC-CCceee--cccc-Ccc
Q 019482           85 GGCKLFEVYGG-AT--DINLLAKKMP--PLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP-SLRIIL--DEPK-AHK  155 (340)
Q Consensus        85 ~~i~iw~~~~~-~~--~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~--~~~~-~~~  155 (340)
                      +.+.+|++... ..  ..........  .......+.+++|+|+|+++++...++.|.+|++. +++...  .... ...
T Consensus       108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF  187 (347)
T ss_dssp             TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC
T ss_pred             CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC
Confidence            89999999632 21  1111110000  00123458899999999966776778899999998 444221  1111 223


Q ss_pred             ceeEEEecCCCCeEEE-eeCCCeEEEEEccC--Cee--EEEeecCCC-----CceeeEEEccCCCcceEEEEEecCCcce
Q 019482          156 SVLDMDFSLDSEFLAT-TSTDGSARIWKTED--GVA--WTFLTRNSD-----EKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~-~~~d~~v~iwd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      .+..++|+|||+++++ ...++.+.+|+++.  ++.  +..+.....     ..+..++|+|+|+++    .++...++.
T Consensus       188 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l----~v~~~~~~~  263 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL----YVSNRGYNT  263 (347)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEE----EEEEETTTE
T ss_pred             CCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEE----EEEeCCCCE
Confidence            5778999999996655 55788999999874  443  222221111     347889999999963    245556899


Q ss_pred             EEEEECCCC---cEEeeeeccCCCeeEEEECCCCCEEEEeeCC-CcEEEE--eccCceEee
Q 019482          226 LAVYDISTW---NKIGHKRLLRKPASVLSISLDGKYLAMGSKD-GDICVV--DVKKMEINH  280 (340)
Q Consensus       226 i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~i~--d~~~~~~~~  280 (340)
                      |.+||+...   +.+..+..+...+..++|+|||++|++++.+ +.|.+|  |..+++...
T Consensus       264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            999999732   4444555555678899999999999888764 899999  555666543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.92  E-value=6e-24  Score=195.17  Aligned_cols=281  Identities=13%  Similarity=0.101  Sum_probs=189.6

Q ss_pred             EEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCC---CeeEEEEcCCCCeEEEEec-
Q 019482            8 TCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEG---DPMTIAVNPSGDDFVCSTT-   83 (340)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~-   83 (340)
                      .+++|+|+.   .+++.+       .++.|.+|+.+        .......+.+|..   .+.+++|||||++|++++. 
T Consensus        19 ~~~~~s~dg---~~~~~~-------~d~~i~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~   80 (719)
T 1z68_A           19 FFPNWISGQ---EYLHQS-------ADNNIVLYNIE--------TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDY   80 (719)
T ss_dssp             CCCEESSSS---EEEEEC-------TTSCEEEEESS--------SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEE
T ss_pred             CccEECCCC---eEEEEc-------CCCCEEEEEcC--------CCcEEEEEccccccccceeeEEECCCCCeEEEEecC
Confidence            478999943   566632       35679999886        3333344444433   4899999999999998876 


Q ss_pred             --------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc-
Q 019482           84 --------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH-  154 (340)
Q Consensus        84 --------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-  154 (340)
                              ++.|++||+.+++......        ....+..++|||||+.|+.+. ++.|++|++.+++......... 
T Consensus        81 ~~~~~~s~~~~i~~~d~~~g~~~~~~~--------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~  151 (719)
T 1z68_A           81 SKLWRYSYTATYYIYDLSNGEFVRGNE--------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE  151 (719)
T ss_dssp             EECSSSCEEEEEEEEETTTTEECCSSC--------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred             ceeEEeecceEEEEEECCCCcccccee--------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence                    6899999998886521010        124578899999999999885 7899999998877654332221 


Q ss_pred             cce-----------------eEEEecCCCCeEEEeeCCC----------------------------------eEEEEEc
Q 019482          155 KSV-----------------LDMDFSLDSEFLATTSTDG----------------------------------SARIWKT  183 (340)
Q Consensus       155 ~~i-----------------~~~~~~~~~~~l~~~~~d~----------------------------------~v~iwd~  183 (340)
                      ..+                 .+++|+|||++|++++.|.                                  .|++||+
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~  231 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT  231 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES
T ss_pred             CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC
Confidence            112                 4899999999999987552                                  7889999


Q ss_pred             cCCeeE--EEee-----cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE----CCCCcEEeee----eccCCCee
Q 019482          184 EDGVAW--TFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD----ISTWNKIGHK----RLLRKPAS  248 (340)
Q Consensus       184 ~~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d----~~~~~~~~~~----~~~~~~i~  248 (340)
                      .+++..  ..+.     ..+...+..++|+||++. ++...........|.+||    ..+++.....    ..+...+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~-~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~  310 (719)
T 1z68_A          232 TYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERV-CLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAG  310 (719)
T ss_dssp             SCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEE-EEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSS
T ss_pred             CCCCccceeEccCCccCCCCcceEEEeEEeCCCeE-EEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEc
Confidence            887642  1221     134557899999999753 111001122235689999    8777655444    35555565


Q ss_pred             -----EEEECCCCCEEEE--eeCCC--cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-----CcEEE
Q 019482          249 -----VLSISLDGKYLAM--GSKDG--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-----WGAMI  314 (340)
Q Consensus       249 -----~~~~s~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i  314 (340)
                           .+.|+|||+.++.  ...+|  .|.+||+.+++... +. .+ ...+..+.++ +++.|+..+.+     +..++
T Consensus       311 ~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~-lt-~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l  386 (719)
T 1z68_A          311 GFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ-IT-SG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNI  386 (719)
T ss_dssp             SSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE-CS-CS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEE
T ss_pred             cccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe-cc-cC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEE
Confidence                 7899999996654  43455  57777887766332 22 22 3457777777 77766665554     88999


Q ss_pred             EEecCC
Q 019482          315 TKLTVP  320 (340)
Q Consensus       315 w~~~~~  320 (340)
                      |.++..
T Consensus       387 ~~~~~~  392 (719)
T 1z68_A          387 YRISIG  392 (719)
T ss_dssp             EEEECS
T ss_pred             EEEeCC
Confidence            999863

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.92  E-value=4.3e-23  Score=175.68  Aligned_cols=286  Identities=10%  Similarity=0.061  Sum_probs=184.7

Q ss_pred             eeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEE
Q 019482           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL   89 (340)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~i   89 (340)
                      .+|+|+   +..+++...     .++...+|.++..+.      .......+|...+..++|+|||+.|+.++.++.|++
T Consensus        41 ~~~SpD---g~~l~~~~~-----~~g~~~l~~~d~~~g------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~  106 (388)
T 3pe7_A           41 KCFTRD---GSKLLFGGA-----FDGPWNYYLLDLNTQ------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMR  106 (388)
T ss_dssp             CCBCTT---SCEEEEEEC-----TTSSCEEEEEETTTC------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEE
T ss_pred             ccCCCC---CCEEEEEEc-----CCCCceEEEEeCCCC------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEE
Confidence            679994   444554442     233456666654432      223334456556667889999999999999989999


Q ss_pred             EEecCceeeeeeccccCCCCCCCCCeEEE--EEecCCCeEEE----------------------ccCCCcEEEEeCCCCc
Q 019482           90 FEVYGGATDINLLAKKMPPLQDAGPQKCL--SFSVDGSRFAA----------------------GGVDGHLRIMHWPSLR  145 (340)
Q Consensus        90 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~----------------------~~~dg~i~~~d~~~~~  145 (340)
                      ||+.+++.......       +...+...  .++|++++++.                      ...+..|.+||+.+++
T Consensus       107 ~d~~~g~~~~~~~~-------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~  179 (388)
T 3pe7_A          107 VDLATLEENVVYQV-------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE  179 (388)
T ss_dssp             EETTTCCEEEEEEC-------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred             EECCCCcceeeeec-------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence            99998765433221       22333333  34889988873                      2345789999999886


Q ss_pred             eeeccccCccceeEEEecC-CCCeEEEeeCC------CeEEEEEccCCeeEEEeecCCC-CceeeEEEccCCCcceEEEE
Q 019482          146 IILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSD-EKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~  217 (340)
                      ... +..+...+..+.|+| ||+.|+.++.+      ..|.++|...++. ..+..... ..+..+.|+|||+.+++...
T Consensus       180 ~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          180 STV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             eEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEec
Confidence            543 444556789999999 99998877653      3788888765543 33433332 35778999999997433211


Q ss_pred             EecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEe---------eCCCcEEEEeccCceEeeccc
Q 019482          218 VQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMG---------SKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      -.+..+..|.+||+.+++.........     .....+.|+|||+.|+..         ..+..|++||+.+++......
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~  337 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR  337 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEE
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEecc
Confidence            112223359999999987532222111     001223799999988864         446689999999887654322


Q ss_pred             cccccc-----------ceeeEEEecCCeEEEEEe-cCCcEEEEEecCCC
Q 019482          284 RLHLGT-----------SIALVEFCPTQRVVLTAS-KEWGAMITKLTVPA  321 (340)
Q Consensus       284 ~~~~~~-----------~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~  321 (340)
                        + ..           .+..++|+|||+.|+..+ .+|...||.++.+.
T Consensus       338 --~-~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          338 --H-DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             --C-CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             --c-cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence              2 12           478899999998777655 57889999987665

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.92  E-value=2.2e-21  Score=163.55  Aligned_cols=275  Identities=13%  Similarity=0.148  Sum_probs=177.3

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe-cC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TN   84 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d   84 (340)
                      .+..++|+|+   +.++++++...  ..++.+.+|.++..+..+    ........+...+..+++  ++++|++++ .+
T Consensus        51 ~p~~l~~spd---g~~l~~~~~~~--~~~~~v~~~~~~~~~g~~----~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~  119 (361)
T 3scy_A           51 NPSYLIPSAD---GKFVYSVNEFS--KDQAAVSAFAFDKEKGTL----HLLNTQKTMGADPCYLTT--NGKNIVTANYSG  119 (361)
T ss_dssp             CCCSEEECTT---SSEEEEEECCS--STTCEEEEEEEETTTTEE----EEEEEEECSSSCEEEEEE--CSSEEEEEETTT
T ss_pred             CCceEEECCC---CCEEEEEEccC--CCCCcEEEEEEeCCCCcE----EEeeEeccCCCCcEEEEE--CCCEEEEEECCC
Confidence            3456788884   34444444211  134679999998653322    122233445567888888  888777776 57


Q ss_pred             CCEEEEEecCceeeeeecc----c---cCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCce------e---
Q 019482           85 GGCKLFEVYGGATDINLLA----K---KMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI------I---  147 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~----~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~------~---  147 (340)
                      +.+.+|++...........    .   .....++...+.+++|+|+|+++++++ .++.|.+|++.....      +   
T Consensus       120 ~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          120 GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            8999999975433222111    0   000112334578899999999665554 578999998875431      1   


Q ss_pred             ----eccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccCCee--EEEeec--CCCCceeeEEEccCCCcceEEEEE
Q 019482          148 ----LDEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVA--WTFLTR--NSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       148 ----~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                          .........+..++|+|+|+++++++ .++.|.+|++++++.  +..+..  .....+..++|+|+|+++    .+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l----~v  275 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL----YA  275 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE----EE
T ss_pred             ccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE----EE
Confidence                11223334678999999999887776 689999999987754  222221  112346799999999972    23


Q ss_pred             ecCC-cceEEEEECC--CCc--EEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEE--eccCceEeecccccccccc
Q 019482          219 QRGD-KALLAVYDIS--TWN--KIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVV--DVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       219 ~~~~-d~~i~i~d~~--~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~  290 (340)
                      +... ++.|.+|++.  +++  .+..+.. ...+..++|+|+|++|++++ .++.|.+|  |..+++........+ ...
T Consensus       276 ~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-~~~  353 (361)
T 3scy_A          276 SNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIK-VDK  353 (361)
T ss_dssp             EECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEE-CSS
T ss_pred             ECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeee-CCC
Confidence            4444 6899999986  444  3333444 55678999999999998887 57889996  555677665443333 346


Q ss_pred             eeeEEEe
Q 019482          291 IALVEFC  297 (340)
Q Consensus       291 i~~~~~~  297 (340)
                      +.++.|.
T Consensus       354 p~~v~~~  360 (361)
T 3scy_A          354 PVCLKFV  360 (361)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEc
Confidence            7888885

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=1.9e-22  Score=168.16  Aligned_cols=244  Identities=14%  Similarity=0.071  Sum_probs=174.5

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEec-C----CCCeeEEEEcCCCCeEEE
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE-S----EGDPMTIAVNPSGDDFVC   80 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~~~~~~~~~~l~~   80 (340)
                      .+.+++|+|+..  .+++.+.      .++.|.+|+...        ......+.. +    ...+..++|+|+|+++++
T Consensus        35 ~~~~~~~s~dg~--~l~v~~~------~~~~v~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~   98 (337)
T 1pby_B           35 TPMVPMVAPGGR--IAYATVN------KSESLVKIDLVT--------GETLGRIDLSTPEERVKSLFGAALSPDGKTLAI   98 (337)
T ss_dssp             CCCCEEECTTSS--EEEEEET------TTTEEEEEETTT--------CCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred             CccceEEcCCCC--EEEEEeC------CCCeEEEEECCC--------CCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence            467889998542  3444333      345688887652        222222221 1    226789999999999988


Q ss_pred             Ee------------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482           81 ST------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        81 ~~------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  148 (340)
                      +.            .++.|.+||+.+++....+..        ...+.+++|+|++++|+++  ++.|.+||+.+++...
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~  168 (337)
T 1pby_B           99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE  168 (337)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE
T ss_pred             EecccccccccccccCceEEEEECCCCcEEEEEeC--------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee
Confidence            86            578999999988776544421        2456788999999988887  6889999999888765


Q ss_pred             ccccCccceeEEEecCCCCeEEEeeCC-C-----------------------eEEEEEccCCeeEEEeecCCCCceeeEE
Q 019482          149 DEPKAHKSVLDMDFSLDSEFLATTSTD-G-----------------------SARIWKTEDGVAWTFLTRNSDEKIELCR  204 (340)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d-~-----------------------~v~iwd~~~~~~~~~~~~~~~~~v~~~~  204 (340)
                      .+..+.. ...+.|+|+++.++..+.+ +                       .|.+||+++++....-...+...+..++
T Consensus       169 ~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  247 (337)
T 1pby_B          169 DKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA  247 (337)
T ss_dssp             EECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             eeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEE
Confidence            5543331 1234789998876655432 2                       4689999988775222223334678899


Q ss_pred             EccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc
Q 019482          205 FSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR  284 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  284 (340)
                      |+|+++.     ++++  ++.|.+||+.+++.+..+... ..+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus       248 ~s~dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          248 VNPAKTR-----AFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             ECTTSSE-----EEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ECCCCCE-----EEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            9999997     3333  789999999998887666543 4678999999999999999999999999999887766543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=1.5e-23  Score=180.32  Aligned_cols=201  Identities=13%  Similarity=0.101  Sum_probs=150.7

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc----------eee-----ccccCccceeEEEecCCCCeEE----Eee
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----------IIL-----DEPKAHKSVLDMDFSLDSEFLA----TTS  173 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----------~~~-----~~~~~~~~i~~~~~~~~~~~l~----~~~  173 (340)
                      ..+..+++++++.++++++.++ +++|+.....          ...     ....+...|.+++|+|++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3578899999999999998887 8888753110          000     0112334699999999999999    788


Q ss_pred             CCCeEEEEEccCC--------eeEEE--eecCCCCceeeEEEccC-CCcceEEEEEecCCcceEEEEECCCCcEEeeeec
Q 019482          174 TDGSARIWKTEDG--------VAWTF--LTRNSDEKIELCRFSKD-GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL  242 (340)
Q Consensus       174 ~d~~v~iwd~~~~--------~~~~~--~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  242 (340)
                      .|+.|++||++++        +++..  ....|...|.+++|+|+ +..     +++++.|+.|++||++++..+.....
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~-----las~s~Dg~v~iwD~~~~~~~~~~~~  190 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM-----VAVCLADGSIAVLQVTETVKVCATLP  190 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE-----EEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE-----EEEEECCCeEEEEEcCCCcceeeccC
Confidence            9999999999765        22222  22235678999999998 554     78889999999999999877666677


Q ss_pred             cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc-----ccccceeeEEEecCCeEEEEEe-cCCc-----
Q 019482          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-----HLGTSIALVEFCPTQRVVLTAS-KEWG-----  311 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~-~dg~-----  311 (340)
                      |...+.+++|+|+|++|++|+.||.|++||.+ ++....+...     .+...+.+++|++++.++++.+ .||.     
T Consensus       191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~  269 (434)
T 2oit_A          191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSP  269 (434)
T ss_dssp             GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCC
T ss_pred             CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCC
Confidence            88899999999999999999999999999998 3333222110     0123799999999998875533 4433     


Q ss_pred             -EEEEEecCC
Q 019482          312 -AMITKLTVP  320 (340)
Q Consensus       312 -i~iw~~~~~  320 (340)
                       +++|++...
T Consensus       270 ~v~i~~l~~~  279 (434)
T 2oit_A          270 DVVMALLPKK  279 (434)
T ss_dssp             EEEEEECCCT
T ss_pred             ceEEEEeccC
Confidence             889998754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=6e-22  Score=165.97  Aligned_cols=245  Identities=15%  Similarity=0.062  Sum_probs=170.7

Q ss_pred             eeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEE-EEecCCCE
Q 019482           10 GSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFV-CSTTNGGC   87 (340)
Q Consensus        10 ~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~-~~~~d~~i   87 (340)
                      +++.+   +..++++++      .++.|.+|+..        +......+..+. ..+..++|+|+|++++ +...++.|
T Consensus         5 ~~~~~---~~~~~v~~~------~~~~v~~~d~~--------~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i   67 (349)
T 1jmx_B            5 PALKA---GHEYMIVTN------YPNNLHVVDVA--------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI   67 (349)
T ss_dssp             CCCCT---TCEEEEEEE------TTTEEEEEETT--------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             ccccC---CCEEEEEeC------CCCeEEEEECC--------CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence            45555   334555444      45669999876        333333444332 2588999999998665 44567899


Q ss_pred             EEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------------CcEEEEeCCCCceeec--cccC
Q 019482           88 KLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------------GHLRIMHWPSLRIILD--EPKA  153 (340)
Q Consensus        88 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------g~i~~~d~~~~~~~~~--~~~~  153 (340)
                      .+||+.+++....+...... ......+.+++|+|+|++|++++.+            +.|.+||+.+++....  ...+
T Consensus        68 ~~~d~~t~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  146 (349)
T 1jmx_B           68 YGIDLDTCKNTFHANLSSVP-GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM  146 (349)
T ss_dssp             EEEETTTTEEEEEEESCCST-TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred             EEEeCCCCcEEEEEEccccc-ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC
Confidence            99999888765444321100 0002236789999999999988865            8999999987543321  1223


Q ss_pred             ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC-------------------------------------
Q 019482          154 HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-------------------------------------  196 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-------------------------------------  196 (340)
                      ...+.+++|+|+++ +++++  +.|++||+.+++.+..+....                                     
T Consensus       147 ~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  223 (349)
T 1jmx_B          147 PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  223 (349)
T ss_dssp             CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence            34688999999999 55554  349999999888776654221                                     


Q ss_pred             ------------------------------CCceeeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC
Q 019482          197 ------------------------------DEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK  245 (340)
Q Consensus       197 ------------------------------~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  245 (340)
                                                    ...+..++|+| +++.     ++.+  ++.|.+||+.+++.+..+.. ..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~-----l~~~--~~~v~~~d~~~~~~~~~~~~-~~  295 (349)
T 1jmx_B          224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-----IYGV--LNRLAKYDLKQRKLIKAANL-DH  295 (349)
T ss_dssp             ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTE-----EEEE--ESEEEEEETTTTEEEEEEEC-SS
T ss_pred             CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCE-----EEEE--cCeEEEEECccCeEEEEEcC-CC
Confidence                                          01244667778 8886     3333  88999999999987766654 34


Q ss_pred             CeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          246 PASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       246 ~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      .+..++|+|+|++|++++.++.|++||+.+++.+..+.
T Consensus       296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            57889999999999988889999999999988776654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=192.47  Aligned_cols=240  Identities=9%  Similarity=-0.026  Sum_probs=167.2

Q ss_pred             EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---------CCcEEE
Q 019482           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLRI  138 (340)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~  138 (340)
                      .++|+|+|++++ .+.|+.|++||+.+++..........    ....+.+++|||||++|++++.         ++.|++
T Consensus        20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTM----KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHH----HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccc----cccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence            789999996554 45689999999998875443322110    0124789999999999998876         689999


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc-----------------ee
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK-----------------IE  201 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-----------------v~  201 (340)
                      ||+.+++.+... .....+..++|+|||+.|+++. ++.|++||+.+++........+...                 ..
T Consensus        95 ~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           95 YDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             EETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred             EECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence            999988763111 1124688999999999999986 7899999998887654332222211                 25


Q ss_pred             eEEEccCCCcceEEEEEecCCc----------------------------------ceEEEEECCCCcEE---e-----e
Q 019482          202 LCRFSKDGTKPFLFCTVQRGDK----------------------------------ALLAVYDISTWNKI---G-----H  239 (340)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d----------------------------------~~i~i~d~~~~~~~---~-----~  239 (340)
                      +++|+|||+.+     +.++.|                                  ..|++||+.+++..   .     .
T Consensus       173 ~~~wSPDG~~l-----a~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  247 (719)
T 1z68_A          173 ALWWSPNGKFL-----AYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM  247 (719)
T ss_dssp             CEEECTTSSEE-----EEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred             cEEECCCCCEE-----EEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence            89999999973     332222                                  28899999987642   1     1


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCC----CcEEEEe----ccCceEeeccc---cccccccee-----eEEEecCCeEE
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKD----GDICVVD----VKKMEINHWSK---RLHLGTSIA-----LVEFCPTQRVV  303 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~i~-----~~~~~~~~~~l  303 (340)
                      +..+...+..++|+||++++++....    ..|.+||    +.+++....+.   ..+ ...+.     .+.|+|||+.|
T Consensus       248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l  326 (719)
T 1z68_A          248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVSTPVFSYDAISY  326 (719)
T ss_dssp             HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCCCCEECTTSSCE
T ss_pred             CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccCCccEECCCCCeE
Confidence            22456678999999998877774432    2488899    88887765542   234 34565     88999999855


Q ss_pred             E--EEecCCcEEEEEecCC
Q 019482          304 L--TASKEWGAMITKLTVP  320 (340)
Q Consensus       304 ~--~~~~dg~i~iw~~~~~  320 (340)
                      +  +...+|...||.++..
T Consensus       327 ~~~~~~~~g~~~l~~~~~~  345 (719)
T 1z68_A          327 YKIFSDKDGYKHIHYIKDT  345 (719)
T ss_dssp             EEEEECTTSCEEEEEESSC
T ss_pred             EEEEEccCCceEEEEEECC
Confidence            4  4556776666666543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.90  E-value=1.1e-21  Score=180.41  Aligned_cols=284  Identities=12%  Similarity=0.087  Sum_probs=187.4

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCC-----eeEEEEcCCCCeEE
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-----PMTIAVNPSGDDFV   79 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~   79 (340)
                      .+.++++|+|+   +.+++.+        ++.|.+|+..        +......+.+|...     ...++|||||++|+
T Consensus        17 ~~~~~~~w~~d---g~~~~~~--------~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~   77 (740)
T 4a5s_A           17 LKLYSLRWISD---HEYLYKQ--------ENNILVFNAE--------YGNSSVFLENSTFDEFGHSINDYSISPDGQFIL   77 (740)
T ss_dssp             CCCCCEEECSS---SEEEEEE--------TTEEEEEETT--------TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEE
T ss_pred             ccccccEECCC---CcEEEEc--------CCcEEEEECC--------CCceEEEEechhhhhhcccccceEECCCCCEEE
Confidence            45678999994   4677743        4569999876        33333446666543     24488999999999


Q ss_pred             EEecC---------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc
Q 019482           80 CSTTN---------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE  150 (340)
Q Consensus        80 ~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~  150 (340)
                      .++.+         +.+.+||+.+++... +.       .+...+..++|||||+.|+.+. ++.|++|++.+++..+..
T Consensus        78 ~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~-------~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt  148 (740)
T 4a5s_A           78 LEYNYVKQWRHSYTASYDIYDLNKRQLIT-EE-------RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRIT  148 (740)
T ss_dssp             EEEEEEECSSSCEEEEEEEEETTTTEECC-SS-------CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC
T ss_pred             EEECCeeeEEEccceEEEEEECCCCcEEE-cc-------cCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEc
Confidence            98876         556799999887432 21       2456799999999999999884 689999999887754432


Q ss_pred             c-cCccce-----------------eEEEecCCCCeEEEeeCCC------------------------------------
Q 019482          151 P-KAHKSV-----------------LDMDFSLDSEFLATTSTDG------------------------------------  176 (340)
Q Consensus       151 ~-~~~~~i-----------------~~~~~~~~~~~l~~~~~d~------------------------------------  176 (340)
                      . ++...+                 ..+.|+|||+.|+.++.|.                                    
T Consensus       149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~  228 (740)
T 4a5s_A          149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV  228 (740)
T ss_dssp             SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred             CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence            2 221112                 3489999999999875321                                    


Q ss_pred             eEEEEEccC---Ce--eEEEeec-----CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc----EE--eee
Q 019482          177 SARIWKTED---GV--AWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----KI--GHK  240 (340)
Q Consensus       177 ~v~iwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----~~--~~~  240 (340)
                      +|++||+.+   ++  ....+..     .+...+..++|+|||+.+ ++.+.....+..|.+||+.+++    +.  ..+
T Consensus       229 ~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~-~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l  307 (740)
T 4a5s_A          229 KFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERIS-LQWLRRIQNYSVMDICDYDESSGRWNCLVARQH  307 (740)
T ss_dssp             EEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEE-EEEEESSTTEEEEEEEEEETTTTEEEECGGGCE
T ss_pred             EEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEE-EEEeCCCCCEEEEEEEECCCCccccceeEEEEe
Confidence            588899988   63  2233332     245568999999999842 2222333456789999999887    22  112


Q ss_pred             --eccCCCee-----EEEECCCCCEEE-EeeC-C--CcEEEEeccCceEeecccccccccceeeEEEecCCeE-EEEEec
Q 019482          241 --RLLRKPAS-----VLSISLDGKYLA-MGSK-D--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTASK  308 (340)
Q Consensus       241 --~~~~~~i~-----~~~~s~~~~~l~-~~~~-d--g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~  308 (340)
                        ..+...+.     .+.|+|||+.|+ ..+. +  ..|++||+.+++...... +  ...+..+.+ +|++. +++++.
T Consensus       308 ~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g--~~~v~~~~~-~d~~~i~f~~~~  383 (740)
T 4a5s_A          308 IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-G--TWEVIGIEA-LTSDYLYYISNE  383 (740)
T ss_dssp             EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-S--SSCEEEEEE-ECSSEEEEEESC
T ss_pred             eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-C--CEEEEEEEE-EeCCEEEEEEec
Confidence              33444443     788999999877 6653 3  368888988776654432 2  234555432 44554 445544


Q ss_pred             ----CCcEEEEEecCCC
Q 019482          309 ----EWGAMITKLTVPA  321 (340)
Q Consensus       309 ----dg~i~iw~~~~~~  321 (340)
                          .+...||.++...
T Consensus       384 ~~~~~~~~~ly~v~~~g  400 (740)
T 4a5s_A          384 YKGMPGGRNLYKIQLID  400 (740)
T ss_dssp             GGGCTTCBEEEEEETTE
T ss_pred             CCCCCceeEEEEEECCC
Confidence                3567788776543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.90  E-value=9.4e-22  Score=167.74  Aligned_cols=287  Identities=11%  Similarity=0.045  Sum_probs=178.9

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCC-eeEEEEcCCCCeEEEEecCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-PMTIAVNPSGDDFVCSTTNG   85 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~d~   85 (340)
                      +.+++|+|+   +..+++....     ++...+|.++..+..      .. .+..+... ...+.|+|||++|+.++.++
T Consensus        38 ~~~~~~Spd---G~~l~~~~~~-----~g~~~l~~~d~~~~~------~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~  102 (396)
T 3c5m_A           38 FYQKCFTQD---GKKLLFAGDF-----DGNRNYYLLNLETQQ------AV-QLTEGKGDNTFGGFISTDERAFFYVKNEL  102 (396)
T ss_dssp             TTSCCBCTT---SCEEEEEECT-----TSSCEEEEEETTTTE------EE-ECCCSSCBCTTTCEECTTSSEEEEEETTT
T ss_pred             eecCcCCCC---CCEEEEEEec-----CCCceEEEEECCCCc------EE-EeecCCCCccccceECCCCCEEEEEEcCC
Confidence            567789984   4444444321     122344544433321      11 12223333 33488999999999999988


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEE-------------------EEEecCCCeEEEc-----cCCCcEEEEeC
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-------------------LSFSVDGSRFAAG-----GVDGHLRIMHW  141 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~~~d~  141 (340)
                      .|++||+.+++.......       +......                   +.|+|+++.++.+     ..+..|.+||+
T Consensus       103 ~l~~~d~~~~~~~~~~~~-------~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~  175 (396)
T 3c5m_A          103 NLMKVDLETLEEQVIYTV-------DEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI  175 (396)
T ss_dssp             EEEEEETTTCCEEEEEEC-------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET
T ss_pred             cEEEEECCCCCcEEEEec-------ccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC
Confidence            999999987754322211       1111111                   3567888776654     35678999999


Q ss_pred             CCCceeeccccCccceeEEEecC-CCCeEEEeeCC------CeEEEEEccCCeeEEEeecCC-CCceeeEEEccCCCcce
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTD------GSARIWKTEDGVAWTFLTRNS-DEKIELCRFSKDGTKPF  213 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~  213 (340)
                      .+++..... .+...+..+.|+| +++.|+..+.+      ..|.+||+..++.. .+.... ...+..++|+|+|+.++
T Consensus       176 ~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~  253 (396)
T 3c5m_A          176 ETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMA  253 (396)
T ss_dssp             TTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEE
T ss_pred             CCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEE
Confidence            887754433 4555788999999 78877766543      36888898765433 333222 23578899999999743


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECC-CCCEEEEee----------------CCCcEEEEeccCc
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISL-DGKYLAMGS----------------KDGDICVVDVKKM  276 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~i~d~~~~  276 (340)
                      +.....+...+.|++||+.+++....... . ... +.|+| ||+++++++                .+..|++||+.++
T Consensus       254 ~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          254 YVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             EEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             EEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence            21111111225599999998875432222 2 233 88999 999888754                3478999999887


Q ss_pred             eEeeccccccccc----------ceeeEEEecCCeEEEEEec-CCcEEEEEecCCCC
Q 019482          277 EINHWSKRLHLGT----------SIALVEFCPTQRVVLTASK-EWGAMITKLTVPAD  322 (340)
Q Consensus       277 ~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~  322 (340)
                      +.....  .+...          .+..++|+|||+.|+.++. ++...||.++....
T Consensus       331 ~~~~l~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          331 SAQKLC--KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             BCCEEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             ceEEcc--CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence            654322  12111          2567899999988876664 67888998876654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.89  E-value=9.9e-22  Score=180.72  Aligned_cols=248  Identities=9%  Similarity=-0.041  Sum_probs=167.0

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---------Cc
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---------GH  135 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~  135 (340)
                      ....++|+|+|++++++  |+.|++||+.+++....+......  ........++|||||++|+.++.+         +.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD--EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT--TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh--hhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            46689999999988886  899999999988765443322111  112233568999999999998875         56


Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCC-----------------
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDE-----------------  198 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~-----------------  198 (340)
                      +.+||+.+++.. .+..+...+...+|||||+.||.+. |+.|++|++.+++...........                 
T Consensus        94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            779999988754 4555667899999999999999985 789999999887754422222211                 


Q ss_pred             ceeeEEEccCCCcceEEEEEec-------------------------------CCcceEEEEECCC---Cc--EEeeeec
Q 019482          199 KIELCRFSKDGTKPFLFCTVQR-------------------------------GDKALLAVYDIST---WN--KIGHKRL  242 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~-------------------------------~~d~~i~i~d~~~---~~--~~~~~~~  242 (340)
                      ....+.|||||+.+.+...-..                               .....|++||+.+   ++  ....+..
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~  251 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA  251 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence            1235899999997433211000                               0122689999998   73  1223332


Q ss_pred             ------cCCCeeEEEECCCCCEEEEeeC----CCcEEEEeccCce----Eeecc---ccccccccee-----eEEEecCC
Q 019482          243 ------LRKPASVLSISLDGKYLAMGSK----DGDICVVDVKKME----INHWS---KRLHLGTSIA-----LVEFCPTQ  300 (340)
Q Consensus       243 ------~~~~i~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~---~~~~~~~~i~-----~~~~~~~~  300 (340)
                            +...+..++|+|||+.++....    +..|++||+.+++    +....   ...+ ...+.     ..+|+|||
T Consensus       252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG  330 (740)
T 4a5s_A          252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDG  330 (740)
T ss_dssp             CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCC
Confidence                  5667899999999997665533    3469999999887    32221   1223 23343     78999999


Q ss_pred             eEEE-EEe-cCCcEEEEEecC
Q 019482          301 RVVL-TAS-KEWGAMITKLTV  319 (340)
Q Consensus       301 ~~l~-~~~-~dg~i~iw~~~~  319 (340)
                      +.|+ ..+ .+|.-.||-++.
T Consensus       331 ~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          331 NSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             SEEEEEEECTTSCEEEEEEET
T ss_pred             CEEEEEEEcCCCceEEEEEEC
Confidence            8776 555 456555555543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.89  E-value=4e-20  Score=153.67  Aligned_cols=247  Identities=11%  Similarity=-0.017  Sum_probs=183.6

Q ss_pred             CCCeeEEEEcCCCCeEEEEecC------------------------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEE
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTN------------------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCL  118 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~  118 (340)
                      -+.+.+++++|+|+++++...+                        +.|.+||..+++.......      .+...+..+
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~------~~~~~p~gi   96 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK------NLFYLPHGL   96 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT------TTCSSEEEE
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC------CccCCceEE
Confidence            4569999999999988887777                        4699999987776443321      133578899


Q ss_pred             EEecCCCeEEEccCCCcEEEEeCCCCc-eeecc---------ccCccceeEEEecC-CCCeEEEee-CCCeEEEEEccCC
Q 019482          119 SFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---------PKAHKSVLDMDFSL-DSEFLATTS-TDGSARIWKTEDG  186 (340)
Q Consensus       119 ~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~---------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~v~iwd~~~~  186 (340)
                      +++|+|+++++...++.|++||..... .+..+         ..+......++++| +++++++.+ .++.|++|| .++
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            999999988888888999999976542 33322         12223688999999 788888876 689999999 567


Q ss_pred             eeEEEeecCC---------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee--ccCCCeeEEEECC-
Q 019482          187 VAWTFLTRNS---------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR--LLRKPASVLSISL-  254 (340)
Q Consensus       187 ~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s~-  254 (340)
                      +.+..+....         -..+..++++|++..+    .++...++.|++||..+++.+..+.  .+...+..++++| 
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l----~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg  251 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQL----CVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPG  251 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEE----EEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETT
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEE----EEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCC
Confidence            7766664211         1237899999994432    5667788999999999888877664  3445688899999 


Q ss_pred             -----CCCEEEEeeCCCcEEEEeccCceEeeccc--ccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          255 -----DGKYLAMGSKDGDICVVDVKKMEINHWSK--RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       255 -----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                           +|+..++...+..|++||..+++.+..+.  ..+ ...+.+++++|+|.++++...++.|++|++....
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence                 33333333445689999999998877653  123 3568999999999999999999999999987543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.89  E-value=1.3e-19  Score=147.58  Aligned_cols=247  Identities=11%  Similarity=0.045  Sum_probs=175.4

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEe-cCCCeEEEccC-CCcEEE
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFS-VDGSRFAAGGV-DGHLRI  138 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~~  138 (340)
                      ++...+.+++++|+|+++++...++.|.+||... +....+... .....+...+.++++. ++++++++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~-~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEeccc-CCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3456789999999999888888889999999873 333333211 1111233568899995 67766666543 789999


Q ss_pred             EeCCCCceeecccc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEE
Q 019482          139 MHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       139 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      || .+++.+..+.. +...+..++++|+++++++...++.|++||.. ++.+..+.. .....+..++++|+++.     
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l-----  177 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI-----  177 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE-----
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE-----
Confidence            99 55665554432 23468899999999988887778999999964 555555542 22345889999999874     


Q ss_pred             EEecCCcceEEEEECCCCcEEeeeecc--CCCeeEEEECCCCCEEEEeeCCC-cEEEEeccCceEeecccccccccceee
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDG-DICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                      .++...++.|++||.. ++.+..+...  ...+..++++|+|+++++...++ .|.+||.. ++.+..+........+.+
T Consensus       178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~  255 (286)
T 1q7f_A          178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFD  255 (286)
T ss_dssp             EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEE
T ss_pred             EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCccee
Confidence            4566678899999974 4555455433  25678999999999888887776 99999964 444444432221234779


Q ss_pred             EEEecCCeEEEEEecCCcEEEEEecC
Q 019482          294 VEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       294 ~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ++++|+|+++++ +.|+.|++|++..
T Consensus       256 i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          256 VALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EEECCCCcEEEE-CCCCeEEEEEccc
Confidence            999999997777 5799999999854

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.88  E-value=1.2e-19  Score=165.08  Aligned_cols=288  Identities=15%  Similarity=0.046  Sum_probs=185.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCee---------EEEEc--
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPM---------TIAVN--   72 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--   72 (340)
                      ...+..++|++   +..+++.+.    ...++...||.......        ...+..|...+.         ...|+  
T Consensus        23 ~~~~~~~~~s~---~~~~~~~~~----~~~~~~~~l~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~S   87 (662)
T 3azo_A           23 SGRPACVGAVG---DEVWWVAPR----PAEAGRATLVRRRADGA--------EESALPAPWNVRNRVFEYSGFPWAGVPR   87 (662)
T ss_dssp             CSCCEEEEEET---TEEEEEEEE----TTTTTEEEEEEECTTSC--------EEESSCTTCCBCCCGGGTCCCCEEEECC
T ss_pred             CCccceeEEcC---CeEEEEecC----cccCCcEEEEEECCCCC--------cceeCCCCccccccccccCCccceeeee
Confidence            45678888886   334444331    12355688888742211        233445555555         56665  


Q ss_pred             CCCCe-EEEEec-CCCEEEEEec--C-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----------CcEE
Q 019482           73 PSGDD-FVCSTT-NGGCKLFEVY--G-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----------GHLR  137 (340)
Q Consensus        73 ~~~~~-l~~~~~-d~~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~  137 (340)
                      |||+. |+.++. +..|.++++.  + +. ...+...  ....+...+..++|+|||+.|++++.+          ..|+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPV--SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCC--CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCC--ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence            99998 776654 4456666654  2 22 2222110  000144578899999999999988876          5899


Q ss_pred             EEeCCC------Cceeeccc-cCccceeEEEecCCCCeEEEeeCC--------CeEEEEEcc-CC--eeEEEeecCCCCc
Q 019482          138 IMHWPS------LRIILDEP-KAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTE-DG--VAWTFLTRNSDEK  199 (340)
Q Consensus       138 ~~d~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~-~~--~~~~~~~~~~~~~  199 (340)
                      +||+.+      ++. ..+. .+...+..++|+|||++|+.++.+        ..|++||+. ++  .....+...+...
T Consensus       165 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~  243 (662)
T 3azo_A          165 AVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEA  243 (662)
T ss_dssp             EEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBC
T ss_pred             EEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCce
Confidence            999987      544 3444 455678889999999999987754        379999998 56  2334444444567


Q ss_pred             eeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCcEEeeeeccCCC--------eeEEEECCCCCEEEEeeCCCcEE
Q 019482          200 IELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKP--------ASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      +..+.|+|||+.     ++++..++  .|.+||+.+++.......+...        +..++|+|+++++++++. +.++
T Consensus       244 ~~~~~~spdg~l-----~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~  317 (662)
T 3azo_A          244 IAQAEWAPDGSL-----IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV  317 (662)
T ss_dssp             EEEEEECTTSCE-----EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred             EcceEECCCCeE-----EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence            899999999993     45556666  7777887676654333322211        467889999999999998 9999


Q ss_pred             EE--eccCceEeecccccccccceeeE-EEecCCeEEEEEecCCcEEEEEecC
Q 019482          270 VV--DVKKMEINHWSKRLHLGTSIALV-EFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       270 i~--d~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ||  |+.+++. ..+. .+ ...+..+ +++++.-++++++.+....||.++.
T Consensus       318 l~~~d~~~~~~-~~l~-~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~  367 (662)
T 3azo_A          318 LGILDPESGEL-VDAA-GP-WTEWAATLTVSGTRAVGVAASPRTAYEVVELDT  367 (662)
T ss_dssp             EEEEETTTTEE-EECC-SS-CCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred             EEEEECCCCcE-EEec-CC-CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence            99  6556664 3332 23 3456666 5544444555666676677777654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.87  E-value=7.4e-20  Score=154.35  Aligned_cols=249  Identities=10%  Similarity=0.062  Sum_probs=159.5

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCe--EEEEe-
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDD--FVCST-   82 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~-   82 (340)
                      .+..++|+|+   ++++++++.      + .+.+|+++..+ .+    ........+ +.+..++|+|+|++  ++++. 
T Consensus        41 ~~~~~a~spd---g~~l~~~~~------~-~v~~~~~~~~g-~~----~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~  104 (365)
T 1jof_A           41 PISWMTFDHE---RKNIYGAAM------K-KWSSFAVKSPT-EI----VHEASHPIG-GHPRANDADTNTRAIFLLAAKQ  104 (365)
T ss_dssp             CCSEEEECTT---SSEEEEEEB------T-EEEEEEEEETT-EE----EEEEEEECC-SSGGGGCTTSCCEEEEEEECSS
T ss_pred             CCcEEEECCC---CCEEEEEcc------c-eEEEEEECCCC-CE----EEeeEeecC-CCCccEEECCCCCEEEEEEecC
Confidence            5677888884   344443332      2 68999886322 11    111111111 23677999999994  44553 


Q ss_pred             ------------cCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCC-CCcee
Q 019482           83 ------------TNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWP-SLRII  147 (340)
Q Consensus        83 ------------~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~-~~~~~  147 (340)
                                  .++.+.+|++.. ++....+....   .++...+.+++|+|||++|+++. .++.|++|++. +++..
T Consensus       105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---YQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             CcceeccceeecCCceEEEEccCCCCcCcceEeeEE---eCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence                        688999999974 44322221100   01346789999999999887765 36789999998 66542


Q ss_pred             --eccc--cCccceeEEEecCCCCeEEEeeC-CCeEEEEEcc--CCeeE---EEeec---C---CCC------ceeeEE-
Q 019482          148 --LDEP--KAHKSVLDMDFSLDSEFLATTST-DGSARIWKTE--DGVAW---TFLTR---N---SDE------KIELCR-  204 (340)
Q Consensus       148 --~~~~--~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~--~~~~~---~~~~~---~---~~~------~v~~~~-  204 (340)
                        ..+.  .+...+..++|+|+|+++++++. ++.|.+|+++  +++..   ..+..   .   +..      .+..++ 
T Consensus       182 ~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~  261 (365)
T 1jof_A          182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA  261 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred             EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEE
Confidence              2222  12446889999999999887764 6899999875  45442   12221   1   111      478899 


Q ss_pred             EccCCCcceEEEEEecCCc----ceEEEEECC-CCcEEee---eeccCCCeeEEEECC---CCCEEEEeeCC-CcEEEEe
Q 019482          205 FSKDGTKPFLFCTVQRGDK----ALLAVYDIS-TWNKIGH---KRLLRKPASVLSISL---DGKYLAMGSKD-GDICVVD  272 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d----~~i~i~d~~-~~~~~~~---~~~~~~~i~~~~~s~---~~~~l~~~~~d-g~i~i~d  272 (340)
                      |+|||+.++   ....+.+    +.|.+|++. +++....   ...+......++|+|   ||++|++++.+ +.|.+|+
T Consensus       262 ~spdG~~l~---v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          262 LTFSGKYMF---ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             ECTTSSEEE---EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             ECCCCCEEE---EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence            999999632   1111222    289999996 5654321   223444567889999   89999999864 8999999


Q ss_pred             ccCc
Q 019482          273 VKKM  276 (340)
Q Consensus       273 ~~~~  276 (340)
                      +...
T Consensus       339 ~~~~  342 (365)
T 1jof_A          339 WKDE  342 (365)
T ss_dssp             EETT
T ss_pred             Echh
Confidence            8765

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.87  E-value=1.6e-20  Score=159.79  Aligned_cols=251  Identities=10%  Similarity=-0.056  Sum_probs=163.2

Q ss_pred             EEEecCCCCeeE-----EEEcCCCCeEEEEec-CCC--EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE
Q 019482           57 YVFDESEGDPMT-----IAVNPSGDDFVCSTT-NGG--CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA  128 (340)
Q Consensus        57 ~~~~~h~~~v~~-----~~~~~~~~~l~~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  128 (340)
                      ..+..|......     .+|+|||++|+.++. ++.  |.+||+.+++......       .+...+..+.|+||++.|+
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-------~~~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-------GRGDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-------SSCBCSSSCEECTTSSEEE
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-------CCCCCccceEEcCCCCEEE
Confidence            345556555555     889999999998887 664  7778887776433221       1223344578999999999


Q ss_pred             EccCCCcEEEEeCCCCceeeccccCccceeEE--EecCCCCeEEEe----------------------eCCCeEEEEEcc
Q 019482          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDM--DFSLDSEFLATT----------------------STDGSARIWKTE  184 (340)
Q Consensus       129 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~----------------------~~d~~v~iwd~~  184 (340)
                      .++.++.|++||+.+++.......+...+...  .++|+++.++..                      ..+..|.+||+.
T Consensus        97 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  176 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK  176 (388)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred             EEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence            99989999999999987665444444434333  348999988742                      244789999999


Q ss_pred             CCeeEEEeecCCCCceeeEEEcc-CCCcceEEEEEecCC---cceEEEEECCCCcEEeeeeccC--CCeeEEEECCCCCE
Q 019482          185 DGVAWTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGD---KALLAVYDISTWNKIGHKRLLR--KPASVLSISLDGKY  258 (340)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~~  258 (340)
                      +++......  ....+..++|+| +|+.+.+  ......   ...|.++|...++.. .+..+.  ..+..+.|+|||+.
T Consensus       177 ~g~~~~l~~--~~~~~~~~~~sp~dg~~l~~--~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          177 TGESTVILQ--ENQWLGHPIYRPYDDSTVAF--CHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             TCCEEEEEE--ESSCEEEEEEETTEEEEEEE--EECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSC
T ss_pred             CCceEEeec--CCccccccEECCCCCCEEEE--EEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCE
Confidence            887654443  334688999999 9986321  111111   447888888766543 233333  24778899999998


Q ss_pred             EEEeeC-CC----cEEEEeccCceEeecccc-cc--cccceeeEEEecCCeEEEEE---------ecCCcEEEEEecC
Q 019482          259 LAMGSK-DG----DICVVDVKKMEINHWSKR-LH--LGTSIALVEFCPTQRVVLTA---------SKEWGAMITKLTV  319 (340)
Q Consensus       259 l~~~~~-dg----~i~i~d~~~~~~~~~~~~-~~--~~~~i~~~~~~~~~~~l~~~---------~~dg~i~iw~~~~  319 (340)
                      |+..+. ++    .|++||+.+++....... .+  .......++|+|||+.|+..         ..+..|++|++..
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~  329 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN  329 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred             EEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence            866543 22    399999998875432211 10  00112334799999988754         4456788888764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.86  E-value=3e-20  Score=169.03  Aligned_cols=251  Identities=10%  Similarity=0.015  Sum_probs=173.3

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEE--ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE---------EEEEe
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCS--TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK---------CLSFS  121 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~~~~  121 (340)
                      +.....+.+|...+..++|++++-+++..  +.++...||....+.....+..       +...+.         ...|+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~   85 (662)
T 3azo_A           13 PIDAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-------APWNVRNRVFEYSGFPWAGV   85 (662)
T ss_dssp             SCCHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-------TTCCBCCCGGGTCCCCEEEE
T ss_pred             CCCHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-------CCccccccccccCCccceee
Confidence            33334466789999999999876666666  4578899999744433333322       222333         45565


Q ss_pred             --cCCCe-EEEccC-CCcEEEEeCC--C-Cceeecccc-----CccceeEEEecCCCCeEEEeeCC----------CeEE
Q 019482          122 --VDGSR-FAAGGV-DGHLRIMHWP--S-LRIILDEPK-----AHKSVLDMDFSLDSEFLATTSTD----------GSAR  179 (340)
Q Consensus       122 --~~~~~-l~~~~~-dg~i~~~d~~--~-~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----------~~v~  179 (340)
                        |||+. |+.++. +..|.++++.  . ++ ...+..     +...+..++|+|||+.|++++.+          ..|+
T Consensus        86 ~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~  164 (662)
T 3azo_A           86 PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA  164 (662)
T ss_dssp             CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred             eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence              99998 766543 5667777765  2 33 333433     44578899999999999998876          5899


Q ss_pred             EEEccC------CeeEEEee-cCCCCceeeEEEccCCCcceEEEEEecCC--------cceEEEEECC-CC---cEEeee
Q 019482          180 IWKTED------GVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGD--------KALLAVYDIS-TW---NKIGHK  240 (340)
Q Consensus       180 iwd~~~------~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------d~~i~i~d~~-~~---~~~~~~  240 (340)
                      +||+.+      ++. ..+. .+ ...+..++|+|||+.+     +..+.        ...|.+||+. ++   +.....
T Consensus       165 ~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~SpDG~~l-----a~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          165 AVPLDGSAAADRSAV-RELSDDA-HRFVTGPRLSPDGRQA-----VWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEETTSTTTTCGGGS-EESSCSC-SSEECCCEECTTSSEE-----EEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEECCCCccccCCce-eEEEecC-CCcccCceECCCCCEE-----EEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            999987      544 3443 32 3568889999999973     32221        2589999999 56   343333


Q ss_pred             eccCCCeeEEEECCCCCEEEEeeCCC--cEEEEeccCceEeeccccccccc-------ceeeEEEecCCeEEEEEecCCc
Q 019482          241 RLLRKPASVLSISLDGKYLAMGSKDG--DICVVDVKKMEINHWSKRLHLGT-------SIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                      ..+...+..+.|+|||+++++++.++  .|.+||+.+++...... .+...       .+..++|+|+++++++++. +.
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~  315 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA  315 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred             CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence            44467899999999999888888888  67777776776554432 22111       1568999999999999999 99


Q ss_pred             EEEEEecCC
Q 019482          312 AMITKLTVP  320 (340)
Q Consensus       312 i~iw~~~~~  320 (340)
                      ++||.++..
T Consensus       316 ~~l~~~d~~  324 (662)
T 3azo_A          316 AVLGILDPE  324 (662)
T ss_dssp             CEEEEEETT
T ss_pred             cEEEEEECC
Confidence            999988754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.85  E-value=3.9e-18  Score=141.99  Aligned_cols=283  Identities=12%  Similarity=-0.008  Sum_probs=184.9

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ..+|.+++|++...   .++..      ..++.++.|.-           .....+..+...+.+++|+|+|++++++..
T Consensus         5 ~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~   64 (333)
T 2dg1_A            5 QQDLPTLFYSGKSN---SAVPI------ISESELQTITA-----------EPWLEISKKGLQLEGLNFDRQGQLFLLDVF   64 (333)
T ss_dssp             -CCCCBCCSCGGGG---CSSCC------CCGGGSCEEEC-----------EEEEEEESSCCCEEEEEECTTSCEEEEETT
T ss_pred             ccccceeeecCCcc---ceeEE------eecccCccccc-----------ceeEEEeccCccccCcEECCCCCEEEEECC
Confidence            46688899998543   22211      24455777721           122345567777899999999997778888


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCceeeccc--cCccce
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIILDEP--KAHKSV  157 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~--~~~~~i  157 (340)
                      ++.|.+||..+++......       .+...+.+++++|+++++++...+    +.|.+||.+++.....+.  .....+
T Consensus        65 ~~~i~~~d~~~~~~~~~~~-------~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           65 EGNIFKINPETKEIKRPFV-------SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             TCEEEEECTTTCCEEEEEE-------CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             CCEEEEEeCCCCcEEEEee-------CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            8899999998766433221       134678999999999888777666    689999988766432221  223468


Q ss_pred             eEEEecCCCCeEEEeeC------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482          158 LDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (340)
Q Consensus       158 ~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  231 (340)
                      .+++++|+++++++...      .+.|..+|.++++...... . ...+..++|+|+++.+    .++...++.|.+||+
T Consensus       138 ~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~i~~~~dg~~l----~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          138 DDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-N-ISVANGIALSTDEKVL----WVTETTANRLHRIAL  211 (333)
T ss_dssp             EEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-E-ESSEEEEEECTTSSEE----EEEEGGGTEEEEEEE
T ss_pred             cceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-C-CCcccceEECCCCCEE----EEEeCCCCeEEEEEe
Confidence            99999999987776653      3556666665544433222 2 2347889999999853    244455789999999


Q ss_pred             CC-CcEEeee-----ecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc----ccceeeEEEecC
Q 019482          232 ST-WNKIGHK-----RLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL----GTSIALVEFCPT  299 (340)
Q Consensus       232 ~~-~~~~~~~-----~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~  299 (340)
                      ++ +..+..+     ...  ...+..++++++|+++++...++.|.+||.. ++.+..+.....    ...+.+++|+||
T Consensus       212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~d  290 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPG  290 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCC
Confidence            64 3322111     111  1356789999999988887778899999984 444443321110    015889999999


Q ss_pred             CeEEEEEecCC----cEEEEEecCC
Q 019482          300 QRVVLTASKEW----GAMITKLTVP  320 (340)
Q Consensus       300 ~~~l~~~~~dg----~i~iw~~~~~  320 (340)
                      ++.|+.++.++    .-.||.++..
T Consensus       291 g~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          291 TNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             SCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCEEEEEeCccCCCCCceEEEEecc
Confidence            86666555543    3456666544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.84  E-value=3.5e-18  Score=143.03  Aligned_cols=224  Identities=13%  Similarity=0.072  Sum_probs=153.1

Q ss_pred             CCeeEEEEcCCCCeEEEEecC---C--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----
Q 019482           64 GDPMTIAVNPSGDDFVCSTTN---G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----  133 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d---~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----  133 (340)
                      ..+..++|+|||++|+.++.+   +  .|.+|++.+++..... .       ... +..++|+|||+.|+.++.+     
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-------~~~-~~~~~wspdg~~l~~~~~~~~~~~  129 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-------AKN-IRSLEWNEDSRKLLIVGFKRREDE  129 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-------ESE-EEEEEECTTSSEEEEEEECCCC--
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-------CCC-ccceeECCCCCEEEEEEccCCCcC
Confidence            458899999999999887654   3  3777787776543222 1       123 8899999999988887632     


Q ss_pred             ----------------------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCC-------eEEEEEcc
Q 019482          134 ----------------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG-------SARIWKTE  184 (340)
Q Consensus       134 ----------------------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~v~iwd~~  184 (340)
                                            ..|.+||+.+++.+..+.. . .+..+.|+||| +++++..+.       ...+|.+.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             -------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             CcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence                                  5699999988876333433 3 78899999999 777776542       34555554


Q ss_pred             CCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC-------cceEEEEECCCCcEEeeeeccCCCeeE-EEECCCC
Q 019482          185 DGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-------KALLAVYDISTWNKIGHKRLLRKPASV-LSISLDG  256 (340)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~s~~~  256 (340)
                      +++. ..+..+  ..+..+  +|+|+.++    +.+..       ...|.+||  +++.......+...+.. +.|+ ++
T Consensus       207 ~~~~-~~l~~~--~~~~~~--spdg~~l~----~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg  274 (347)
T 2gop_A          207 DGKE-EKMFEK--VSFYAV--DSDGERIL----LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK  274 (347)
T ss_dssp             TTEE-EEEEEE--ESEEEE--EECSSCEE----EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE
T ss_pred             CCce-EEeccC--cceeeE--CCCCCEEE----EEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc
Confidence            5543 334332  334444  99999732    22211       35788888  55554444445567776 8999 88


Q ss_pred             CEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE-EEEEec
Q 019482          257 KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA-MITKLT  318 (340)
Q Consensus       257 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i-~iw~~~  318 (340)
                       ++++++.++.++|| +.+++.....  .+ ...|.+++|+|  .++++++.++.. .||.++
T Consensus       275 -~~~~~~~~~~~~l~-~~~g~~~~~~--~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          275 -VYFTLFEEGSVNLY-IWDGEIKPIA--KG-RHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             -EEEEEEETTEEEEE-EESSSEEEEE--CS-SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             -EEEEEecCCcEEEE-EcCCceEEEe--cC-CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence             88999999999999 8766554332  22 45789999999  677777777665 888886

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.84  E-value=2.1e-18  Score=144.88  Aligned_cols=265  Identities=11%  Similarity=0.042  Sum_probs=177.3

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec----------CCCEEEEEecCceeeeeec
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT----------NGGCKLFEVYGGATDINLL  102 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~  102 (340)
                      .++.+.+|+..        +......+..+..+  .++|+|||++++++..          ++.|.+||..+.+....+.
T Consensus        29 ~d~~v~v~D~~--------t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~   98 (361)
T 2oiz_A           29 TESRVHVYDYT--------NGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEIS   98 (361)
T ss_dssp             GGCEEEEEETT--------TCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEE
T ss_pred             ccCeEEEEECC--------CCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEE
Confidence            46678888654        22223445555444  8999999999998863          5679999998877665543


Q ss_pred             cccCCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeec-cccCccceeEEEecCCC-CeEEEeeCCCeE
Q 019482          103 AKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDGSA  178 (340)
Q Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v  178 (340)
                      .... ...+......++++|||++|+++..  ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+
T Consensus        99 ~~~~-~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~  175 (361)
T 2oiz_A           99 LPPK-RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGL  175 (361)
T ss_dssp             ECTT-BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSE
T ss_pred             cCcc-ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcE
Confidence            2110 1112345678999999999998864  57899999999887765 432 2 22335677765 567888899999


Q ss_pred             EEEEccC-CeeEEEee----cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE--eeeecc--------
Q 019482          179 RIWKTED-GVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRLL--------  243 (340)
Q Consensus       179 ~iwd~~~-~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~--------  243 (340)
                      .+|++.. ++......    .........+.+++++..     ++..+.++.+.++|+......  ..+...        
T Consensus       176 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~  250 (361)
T 2oiz_A          176 LTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK-----AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN  250 (361)
T ss_dssp             EEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE-----EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred             EEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE-----EEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence            9999865 55442211    001111223445677765     333346788999998755421  111110        


Q ss_pred             --CCCeeEEEECCCCCEEEEeeC-----------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          244 --RKPASVLSISLDGKYLAMGSK-----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       244 --~~~i~~~~~s~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                        ......++++|+++.++++..           .+.|.+||+.+++.+..+.. +  . +.+++|+|||++|++++. +
T Consensus       251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-~--~-p~~ia~spdg~~l~v~n~-~  325 (361)
T 2oiz_A          251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-R--D-ALSMTIDQQRNLMLTLDG-G  325 (361)
T ss_dssp             CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-T--T-CCEEEEETTTTEEEEECS-S
T ss_pred             cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-C--C-eeEEEECCCCCEEEEeCC-C
Confidence              011223789999888887653           34799999999998887643 3  3 999999999999998887 9


Q ss_pred             cEEEEEecCC
Q 019482          311 GAMITKLTVP  320 (340)
Q Consensus       311 ~i~iw~~~~~  320 (340)
                      .|.+||....
T Consensus       326 ~v~v~D~~t~  335 (361)
T 2oiz_A          326 NVNVYDISQP  335 (361)
T ss_dssp             CEEEEECSSS
T ss_pred             eEEEEECCCC
Confidence            9999998654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.83  E-value=1.7e-19  Score=153.75  Aligned_cols=238  Identities=9%  Similarity=-0.063  Sum_probs=158.2

Q ss_pred             CeeEEEEcCCCCeEEEEecC---CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           65 DPMTIAVNPSGDDFVCSTTN---GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      .+..++|+|||++|+.....   ..|.+||+.+++... +...      +......+.|+|||++|+.++.++.|++||+
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~  109 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEG------KGDNTFGGFISTDERAFFYVKNELNLMKVDL  109 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCS------SCBCTTTCEECTTSSEEEEEETTTEEEEEET
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecC------CCCccccceECCCCCEEEEEEcCCcEEEEEC
Confidence            37788999999998877543   367888887766432 2110      1112233789999999999988889999999


Q ss_pred             CCCceeeccccCccceeE-------------------EEecCCCCeEEEe-----eCCCeEEEEEccCCeeEEEeecCCC
Q 019482          142 PSLRIILDEPKAHKSVLD-------------------MDFSLDSEFLATT-----STDGSARIWKTEDGVAWTFLTRNSD  197 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~~v~iwd~~~~~~~~~~~~~~~  197 (340)
                      .+++.......+......                   +.|+|+++.++..     ..+..|++||+.+++......  ..
T Consensus       110 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~--~~  187 (396)
T 3c5m_A          110 ETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ--DT  187 (396)
T ss_dssp             TTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE--ES
T ss_pred             CCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc--CC
Confidence            887754433322222222                   4678888877654     356789999998887655443  33


Q ss_pred             CceeeEEEcc-CCCcceEEEEEecCCc----ceEEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEeeCC-----C
Q 019482          198 EKIELCRFSK-DGTKPFLFCTVQRGDK----ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKD-----G  266 (340)
Q Consensus       198 ~~v~~~~~~~-~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d-----g  266 (340)
                      ..+..+.|+| ++..+++   ......    ..|.+||+..++........ ...+..+.|+|+|++|+.++.+     +
T Consensus       188 ~~~~~~~~sp~dg~~l~~---~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  264 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGF---CHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDR  264 (396)
T ss_dssp             SCEEEEEEETTEEEEEEE---EECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred             cccccceECCCCCCEEEE---EecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccc
Confidence            4688999999 7775322   222222    57999998766533222211 2357789999999988777543     4


Q ss_pred             cEEEEeccCceEeecccccccccceeeEEEec-CCeEEEEEe----------------cCCcEEEEEecC
Q 019482          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLTAS----------------KEWGAMITKLTV  319 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----------------~dg~i~iw~~~~  319 (340)
                      .|++||+.+++...... ..   ... +.|+| ||+++++++                .+..|++|++..
T Consensus       265 ~l~~~d~~~g~~~~l~~-~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          265 VIYKANPETLENEEVMV-MP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             EEEEECTTTCCEEEEEE-CC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred             eEEEEECCCCCeEEeee-CC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence            49999998876544321 11   123 89999 999888765                236788887753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.83  E-value=2.2e-17  Score=135.13  Aligned_cols=238  Identities=11%  Similarity=-0.029  Sum_probs=166.9

Q ss_pred             EEecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           58 VFDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      .+..+.....+++|+|+|+ .++++..++.|..|+..++  ...+..       +...+.+++++|+|+++++...++.|
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~-------~~~~~~~l~~~~dg~l~v~~~~~~~i   92 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH-------PSHHQNGHCLNKQGHLIACSHGLRRL   92 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES-------SCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC-------CCCCcceeeECCCCcEEEEecCCCeE
Confidence            3445667788999999998 6778888889999999876  222221       34678999999999988877777899


Q ss_pred             EEEeCCCCceeeccccC----ccceeEEEecCCCCeEEE----ee-------------CCCeEEEEEccCCeeEEEeecC
Q 019482          137 RIMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLAT----TS-------------TDGSARIWKTEDGVAWTFLTRN  195 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~-------------~d~~v~iwd~~~~~~~~~~~~~  195 (340)
                      .+||..+++........    ...+..++++|+|+++++    ++             ..+.|..++.. ++. ..+.. 
T Consensus        93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~-  169 (296)
T 3e5z_A           93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR-  169 (296)
T ss_dssp             EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC-
T ss_pred             EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec-
Confidence            99999777654322111    124678999999998887    33             12456666554 443 33332 


Q ss_pred             CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcE---EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEE
Q 019482          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNK---IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (340)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  271 (340)
                      ....+..++|+|+++.     +++...++.|.+||+. +++.   ...+......+..++++++|++.++.  ++.|.+|
T Consensus       170 ~~~~~~gi~~s~dg~~-----lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          170 DRVKPNGLAFLPSGNL-----LVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             CCSSEEEEEECTTSCE-----EEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             CCCCCccEEECCCCCE-----EEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence            3345789999999996     5666778899999987 4443   22222234456789999999876665  7889999


Q ss_pred             eccCceEeecccccccccceeeEEE-ecCCeEEEEEecCCcEEEEEecCCC
Q 019482          272 DVKKMEINHWSKRLHLGTSIALVEF-CPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      |.. ++.+..+. .+ .. +.+++| +|+++.|+.++.+   .+|.++...
T Consensus       243 ~~~-g~~~~~~~-~~-~~-~~~~~f~~~d~~~L~v~t~~---~l~~~~~~~  286 (296)
T 3e5z_A          243 TPD-GDELGRVL-TP-QT-TSNLCFGGPEGRTLYMTVST---EFWSIETNV  286 (296)
T ss_dssp             CTT-SCEEEEEE-CS-SC-CCEEEEESTTSCEEEEEETT---EEEEEECSC
T ss_pred             CCC-CCEEEEEE-CC-CC-ceeEEEECCCCCEEEEEcCC---eEEEEEccc
Confidence            986 55555443 23 23 899999 5899888888876   466665443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.83  E-value=1.4e-17  Score=138.29  Aligned_cols=209  Identities=9%  Similarity=0.059  Sum_probs=152.3

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCce-eeeeeccc--cCCCCCCCCCeEEEEEec-CCCeEEEcc-CCCc
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGA-TDINLLAK--KMPPLQDAGPQKCLSFSV-DGSRFAAGG-VDGH  135 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~dg~  135 (340)
                      ++...+..++++|+|+.+++...++.|++|+..... ....+...  ......+...+..++++| +++++++.+ .++.
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~  167 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR  167 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence            455679999999999988888888999999986542 22222110  000012345689999999 788777775 6899


Q ss_pred             EEEEeCCCCceeecccc----------CccceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeE
Q 019482          136 LRIMHWPSLRIILDEPK----------AHKSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELC  203 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~  203 (340)
                      |++|+ .+++.+..+..          .......++++|+ ++++++...++.|++||.++++.+..+.. .....+..+
T Consensus       168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence            99999 55665544421          1124789999998 77777777889999999988888887753 233467889


Q ss_pred             EEcc------CCCcceEEEEEecCCcceEEEEECCCCcEEeeee---ccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          204 RFSK------DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       204 ~~~~------~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      +|+|      ++..     .++...+..|++||..+++.+..+.   .+......++++|+|.++++...++.|++|++.
T Consensus       247 ~~~pg~~~~~~g~~-----~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          247 SYIPGFLFAVNGKP-----YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEETTEEEEEECCC-----CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             eecCCEEEEeCCCE-----EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            9999      3332     2333445689999999999887763   445668899999999888888889999999986


Q ss_pred             C
Q 019482          275 K  275 (340)
Q Consensus       275 ~  275 (340)
                      .
T Consensus       322 ~  322 (329)
T 3fvz_A          322 E  322 (329)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.82  E-value=1.3e-17  Score=134.49  Aligned_cols=241  Identities=7%  Similarity=-0.020  Sum_probs=168.6

Q ss_pred             CeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      .+.+++++++|+.++ +...++.|.+|+..+.......       ......+.+++++++++++++.. ++.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-------FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-------CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-------eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC
Confidence            688999999998666 4467788999987654322111       11234678899999998666655 88999999876


Q ss_pred             CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      .............+..++++|+++++++...++.|.+|+..+........ .....+..++++++++.     .++...+
T Consensus        97 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g~l-----~v~~~~~  170 (270)
T 1rwi_B           97 NNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSGNV-----YVTDTDN  170 (270)
T ss_dssp             SCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECTTCCE-----EEEEGGG
T ss_pred             ceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeCCCCE-----EEEECCC
Confidence            54332222223568899999999877777778899999765544332221 22235789999999973     4555567


Q ss_pred             ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  303 (340)
                      +.|.+||................+..++++++|.++++...++.|.+||..+....... ..+ ...+.+++++++|+++
T Consensus       171 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~-~~~-~~~p~~i~~~~~g~l~  248 (270)
T 1rwi_B          171 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLP-FTG-LNTPLAVAVDSDRTVY  248 (270)
T ss_dssp             TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECC-CCS-CSCEEEEEECTTCCEE
T ss_pred             CEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeec-cCC-CCCceeEEECCCCCEE
Confidence            89999999876654332233356889999999977777777889999998765443322 122 2468999999999988


Q ss_pred             EEEecCCcEEEEEecCCC
Q 019482          304 LTASKEWGAMITKLTVPA  321 (340)
Q Consensus       304 ~~~~~dg~i~iw~~~~~~  321 (340)
                      ++...++.|+++++..+.
T Consensus       249 v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          249 VADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEGGGTEEEEECCCGGG
T ss_pred             EEECCCCEEEEEcCCCcc
Confidence            999999999999986544

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=2.6e-17  Score=138.26  Aligned_cols=265  Identities=11%  Similarity=0.023  Sum_probs=174.7

Q ss_pred             EeeeeecCCCccEEEEcCCC----CcccCCCceEEEEeCCCCCCcccCCeeeEEEec------CCCCeeEEEEcCCCCeE
Q 019482            9 CGSWIKRPENVNLVVLGKSS----RASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDE------SEGDPMTIAVNPSGDDF   78 (340)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~----~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l   78 (340)
                      .++|+|+.   +.+..+...    ..+..++.|.+|+..        +......+..      +...+..++++|+|++|
T Consensus        54 ~i~~spdg---~~lyv~~~~~~~~~~g~~~~~v~v~d~~--------t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l  122 (361)
T 2oiz_A           54 HVQVSNDG---KKIYTMTTYHERITRGKRSDVVEVWDAD--------KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI  122 (361)
T ss_dssp             EEEECTTS---SEEEEEEEEETTSSSSCEEEEEEEEETT--------TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred             ceEECCCC---CEEEEEEecccccccCCCCCEEEEEECc--------CCcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence            78899854   334333210    001135668888754        2222222322      23467889999999999


Q ss_pred             EEEec--CCCEEEEEecCceeeee-eccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEeCCC-Cceee-----
Q 019482           79 VCSTT--NGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMHWPS-LRIIL-----  148 (340)
Q Consensus        79 ~~~~~--d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d~~~-~~~~~-----  148 (340)
                      +++..  ++.|.+||+.+.+.... +..         .....+.+.|++ ..+++.+.||.+.+|++.. ++...     
T Consensus       123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~~---------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~  193 (361)
T 2oiz_A          123 VLQNASPATSIGIVDVAKGDYVEDVTAA---------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK  193 (361)
T ss_dssp             EEEEESSSEEEEEEETTTTEEEEEEGGG---------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC
T ss_pred             EEECCCCCCeEEEEECCCCcEEEEEecC---------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecccc
Confidence            98874  57899999998876554 321         122335667765 5677788899999998865 44331     


Q ss_pred             -ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee--EEEeecCC---------CCceeeEEEccCCCcceEEE
Q 019482          149 -DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--WTFLTRNS---------DEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       149 -~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~  216 (340)
                       .+.....+ ..+.++|++..++..+.++.+.++|+.....  ...+....         ......++|+|+++.+|.  
T Consensus       194 ~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv--  270 (361)
T 2oiz_A          194 QMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYV--  270 (361)
T ss_dssp             CCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEE--
T ss_pred             ceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEE--
Confidence             11111122 2345577887777778899999999875432  12211000         011223789999887432  


Q ss_pred             EEe-cC-------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc--eEeecccccc
Q 019482          217 TVQ-RG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM--EINHWSKRLH  286 (340)
Q Consensus       217 ~~~-~~-------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~  286 (340)
                      ... .+       ....|.+||+.+++.+..+..+.  ...++|+|||++|++++. +.|.+||..++  +.+..+. ..
T Consensus       271 ~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~  346 (361)
T 2oiz_A          271 FMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GA  346 (361)
T ss_dssp             EEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TS
T ss_pred             EEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cC
Confidence            111 11       14589999999999998888776  899999999999999887 99999999999  8887652 22


Q ss_pred             cccceeeEEEecCCe
Q 019482          287 LGTSIALVEFCPTQR  301 (340)
Q Consensus       287 ~~~~i~~~~~~~~~~  301 (340)
                       +.....++++|+|+
T Consensus       347 -G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          347 -AEASLQVQFHPVGG  360 (361)
T ss_dssp             -CSSEEEEEECCCSC
T ss_pred             -CCCcEEEEecCCCC
Confidence             45678999999985

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.81  E-value=1.4e-16  Score=132.13  Aligned_cols=236  Identities=10%  Similarity=-0.053  Sum_probs=167.9

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ..+..+.+. +++.+++...++.|.+||..+++....+.        ....+..++++++++.+++...++.|.+||..+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~--------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t  114 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT--------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT  114 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE--------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC--------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence            346778774 34455555667899999999888766552        235678999999985444444789999999998


Q ss_pred             CceeeccccCc-----cceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          144 LRIILDEPKAH-----KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       144 ~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      ++....+....     .....+++ .+++.+++.. .++.|.++|+++++.+..+...  .....+.++|+|+.     .
T Consensus       115 ~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG~l-----~  186 (328)
T 3dsm_A          115 YEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYNKM-----W  186 (328)
T ss_dssp             TEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTSEE-----E
T ss_pred             CeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCCCE-----E
Confidence            88665544322     14556777 3444444433 4889999999999988877643  34678999999984     3


Q ss_pred             EecCCc----------ceEEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc
Q 019482          218 VQRGDK----------ALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH  286 (340)
Q Consensus       218 ~~~~~d----------~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  286 (340)
                      +++..+          +.|.++|..+++....+... ......++++|++++|+++..  .|.+||..+++.........
T Consensus       187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~  264 (328)
T 3dsm_A          187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEF  264 (328)
T ss_dssp             EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCC
T ss_pred             EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecC
Confidence            444433          78999999998877665543 236789999999999988765  89999998887642211111


Q ss_pred             cccceeeEEEec-CCeEEEEE----ecCCcEEEEEec
Q 019482          287 LGTSIALVEFCP-TQRVVLTA----SKEWGAMITKLT  318 (340)
Q Consensus       287 ~~~~i~~~~~~~-~~~~l~~~----~~dg~i~iw~~~  318 (340)
                      .......++++| +++++++.    ..++.|.+|+.+
T Consensus       265 ~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          265 RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            135688999999 56666666    578899999876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.81  E-value=6.2e-18  Score=154.86  Aligned_cols=244  Identities=12%  Similarity=0.039  Sum_probs=166.7

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCC-----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc-
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-  135 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-  135 (340)
                      |...+..++|||||++||.+..++     .|++||+.+++........        ..+..++|+|||+.|+.++.++. 
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--------~~~~~~~wspDg~~l~~~~~~~~~  194 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------VKFSCMAWTHDGKGMFYNAYPQQD  194 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------ECSCCEEECTTSSEEEEEECCCCS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--------cccceEEEEeCCCEEEEEEECCcc
Confidence            444688999999999998766543     8999999988765432211        22567999999999998887765 


Q ss_pred             ---------------EEEEeCCCCce----eeccccCccceeEEEecCCCCeEEEeeC-----CCeEEEEEccC------
Q 019482          136 ---------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTST-----DGSARIWKTED------  185 (340)
Q Consensus       136 ---------------i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~v~iwd~~~------  185 (340)
                                     |++|++.+++.    +.....+...+..+.|+|||++|+.++.     +..|++||+.+      
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~  274 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT  274 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence                           99999987652    2122223345788999999999887764     56899999986      


Q ss_pred             Ce-eEEEeecCCCCceeeEEEccCCCcceEEEEEec--CCcceEEEEECCCCcE--EeeeeccCC--CeeEEEECCCCCE
Q 019482          186 GV-AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRK--PASVLSISLDGKY  258 (340)
Q Consensus       186 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~--~~~~~~~~~--~i~~~~~s~~~~~  258 (340)
                      +. ....+..+.. .+.. .|+|+|+.+++   .+.  .....|.+||+.++..  ...+..+..  .+..+.|++++.+
T Consensus       275 ~~~~~~~l~~~~~-~~~~-~~s~dg~~l~~---~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  349 (710)
T 2xdw_A          275 GILKWVKLIDNFE-GEYD-YVTNEGTVFTF---KTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFL  349 (710)
T ss_dssp             SSCCCEEEECSSS-SCEE-EEEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             CccceEEeeCCCC-cEEE-EEeccCCEEEE---EECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEE
Confidence            43 3455554333 3333 58899987432   221  2245799999987642  233444433  5778899988888


Q ss_pred             EEEeeCCCc--EEEEeccCceEeecccccccccceeeEEEecCCeEEEEE-ec---CCcEEEEEecCC
Q 019482          259 LAMGSKDGD--ICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA-SK---EWGAMITKLTVP  320 (340)
Q Consensus       259 l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~---dg~i~iw~~~~~  320 (340)
                      +++...|+.  |.+||+.+++....+. .+ ...+..++++|++..++.. +.   .+.+++|++...
T Consensus       350 v~~~~~~g~~~l~~~~~~~g~~~~~l~-~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          350 VLCYLHDVKNTLQLHDLATGALLKIFP-LE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEC-CC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EEEEEECCEEEEEEEECCCCCEEEecC-CC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            888888884  5667776676555443 23 4578899999998655533 22   367888887543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.81  E-value=2.6e-15  Score=122.74  Aligned_cols=278  Identities=6%  Similarity=-0.030  Sum_probs=182.5

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      ..+.++++.++   +.+.+...      .++.+..|+.+   ...     ....+..+...+.+++++++|..+++...+
T Consensus        15 ~~~~~i~~d~~---g~l~v~~~------~~~~v~~~d~~---~~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~   77 (299)
T 2z2n_A           15 TGPYGITVSDK---GKVWITQH------KANMISCINLD---GKI-----TEYPLPTPDAKVMCLTISSDGEVWFTENAA   77 (299)
T ss_dssp             CCEEEEEECTT---SCEEEEET------TTTEEEEECTT---CCE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCccceEECCC---CCEEEEec------CCCcEEEEcCC---CCe-----EEecCCcccCceeeEEECCCCCEEEeCCCC
Confidence            45778888873   34555322      23445555433   111     112222345679999999999877777667


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec-cccCccceeEEEec
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS  163 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~  163 (340)
                      +.|..|+... +. ..+...     .....+.++++.++++++++...++.|..||. +++.... .......+..+++.
T Consensus        78 ~~i~~~~~~g-~~-~~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           78 NKIGRITKKG-II-KEYTLP-----NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             TEEEEECTTS-CE-EEEECS-----STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCCC-cE-EEEeCC-----CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc
Confidence            8899998762 22 111110     13357899999999988887777889999998 5543322 22233468899999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eec
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~  242 (340)
                      ++++.+++...++.|..||. +++............+..+++++++..     .++...++.|.+||. +++.... ...
T Consensus       150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  222 (299)
T 2z2n_A          150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL-----WFVEIIGNKIGRITT-SGEITEFKIPT  222 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE-----EEEccCCceEEEECC-CCcEEEEECCC
Confidence            99988777777789999998 665543222223345889999999874     345556788999999 6654322 222


Q ss_pred             cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ....+..++++++|++.++...++.|..||. +++........+ ...+.++++ ++++++++.+ .+.+..++.+
T Consensus       223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~  294 (299)
T 2z2n_A          223 PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAME-CDKIGKLTLI  294 (299)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred             CCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence            3456889999999987766657789999998 444332211222 357899999 9988777765 4566666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.80  E-value=1.7e-16  Score=129.07  Aligned_cols=237  Identities=12%  Similarity=0.079  Sum_probs=161.0

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE------ecCCCCeeEEEE-cCCCCeE
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF------DESEGDPMTIAV-NPSGDDF   78 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~-~~~~~~l   78 (340)
                      .+.++++.++   ..+++...      .++.|.+|+.+  ....       ..+      .+|...+..+++ .+++..+
T Consensus        31 ~p~~v~~~~~---g~l~v~~~------~~~~i~~~d~~--g~~~-------~~~~~~~~~~~~~~~p~~i~~~~~~g~l~   92 (286)
T 1q7f_A           31 EPSGVAVNAQ---NDIIVADT------NNHRIQIFDKE--GRFK-------FQFGECGKRDSQLLYPNRVAVVRNSGDII   92 (286)
T ss_dssp             CEEEEEECTT---CCEEEEEG------GGTEEEEECTT--SCEE-------EEECCBSSSTTCBSSEEEEEEETTTTEEE
T ss_pred             CCceEEECCC---CCEEEEEC------CCCEEEEECCC--CcEE-------EEecccCCCcccccCceEEEEEcCCCeEE
Confidence            4677888873   34555333      34457777543  2111       111      134467899999 4677666


Q ss_pred             EEEec-CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc--cCcc
Q 019482           79 VCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP--KAHK  155 (340)
Q Consensus        79 ~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~  155 (340)
                      ++... ++.|++||. +++....+..      .+...+.+++++|+++++++...++.|.+||.. ++....+.  .+..
T Consensus        93 v~~~~~~~~i~~~d~-~g~~~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  164 (286)
T 1q7f_A           93 VTERSPTHQIQIYNQ-YGQFVRKFGA------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLE  164 (286)
T ss_dssp             EEECGGGCEEEEECT-TSCEEEEECT------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCS
T ss_pred             EEcCCCCCEEEEECC-CCcEEEEecC------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccC
Confidence            66543 788999994 4444333321      133567999999999988887778999999954 45444332  2334


Q ss_pred             ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC-CCCceeeEEEccCCCcceEEEEEecCCcc-eEEEEECCC
Q 019482          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN-SDEKIELCRFSKDGTKPFLFCTVQRGDKA-LLAVYDIST  233 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~~~  233 (340)
                      .+..++++|+++++++...++.|++||. +++.+..+... ....+..++++++|..     +++...++ .|.+||. +
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l-----~v~~~~~~~~i~~~~~-~  237 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI-----LIADNHNNFNLTIFTQ-D  237 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE-----EEEECSSSCEEEEECT-T
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCE-----EEEeCCCCEEEEEECC-C
Confidence            6889999999998888778899999997 45555555432 1246889999999974     45555565 9999995 4


Q ss_pred             CcEEeeeeccCC--CeeEEEECCCCCEEEEeeCCCcEEEEeccCc
Q 019482          234 WNKIGHKRLLRK--PASVLSISLDGKYLAMGSKDGDICVVDVKKM  276 (340)
Q Consensus       234 ~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~  276 (340)
                      ++.+..+..+..  .+..++++|+|+++++ +.|+.|++|++...
T Consensus       238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            566656654432  3678999999987666 67999999997654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.80  E-value=2e-16  Score=127.56  Aligned_cols=217  Identities=7%  Similarity=-0.062  Sum_probs=168.4

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      .++.|++++.++.|++||.++++...++....      ...+.++.++|+|+++++  .++.|..||. +++.+..+..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~------~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~   74 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK------GWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAP   74 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT------TCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECC
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc------cCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCC
Confidence            45789999999999999998998877765321      135788999999998883  4678999998 78888877654


Q ss_pred             c-cceeEEEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCC-----CCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482          154 H-KSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (340)
Q Consensus       154 ~-~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (340)
                      . ..+.++.+.|+|+++++.+. ++.+..+|. +++.+..+....     ......+++.++|..     +++...++.|
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-----lv~~~~~~~v  148 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNY-----LVPLFATSEV  148 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-----EEEETTTTEE
T ss_pred             CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCE-----EEEecCCCEE
Confidence            3 47888999999999999887 778888885 677776664211     123556788999986     6777889999


Q ss_pred             EEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccc----cccceeeEEEecCCeE
Q 019482          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH----LGTSIALVEFCPTQRV  302 (340)
Q Consensus       227 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~  302 (340)
                      ..||.. ++.+..+.... ...++...++|+.++++..++.|..+|..+++.+..+....    .-..+.+++..++|++
T Consensus       149 ~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i  226 (276)
T 3no2_A          149 REIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL  226 (276)
T ss_dssp             EEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred             EEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence            999998 98887776643 45667888999999999888899999999998876653211    0123788889999998


Q ss_pred             EEEEe
Q 019482          303 VLTAS  307 (340)
Q Consensus       303 l~~~~  307 (340)
                      +++..
T Consensus       227 ~v~~~  231 (276)
T 3no2_A          227 YICNW  231 (276)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88874

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.80  E-value=6.5e-16  Score=136.31  Aligned_cols=268  Identities=11%  Similarity=0.101  Sum_probs=181.5

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEec--CceeeeeeccccCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVY--GGATDINLLAKKMPPLQ  110 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~--~~~~~~~~~~~~~~~~~  110 (340)
                      .++.+.+++.+        +......+.. ...+..+.|+|||+++++++.++.|.+||+.  +.+....+.        
T Consensus       175 ~~~~V~viD~~--------t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--------  237 (567)
T 1qks_A          175 DAGQIALIDGS--------TYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--------  237 (567)
T ss_dssp             TTTEEEEEETT--------TCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE--------
T ss_pred             CCCeEEEEECC--------CCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe--------
Confidence            45668888765        3333333443 2357799999999999999999999999995  555544432        


Q ss_pred             CCCCeEEEEEe----cCCCeEEEccC-CCcEEEEeCCCCceeeccccC--------------------------------
Q 019482          111 DAGPQKCLSFS----VDGSRFAAGGV-DGHLRIMHWPSLRIILDEPKA--------------------------------  153 (340)
Q Consensus       111 ~~~~v~~~~~~----~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~~~--------------------------------  153 (340)
                      .......++|+    |||++++++.. +++|.++|..+.+.+..+.-.                                
T Consensus       238 ~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~  317 (567)
T 1qks_A          238 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK  317 (567)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec
Confidence            22346789999    69998887765 589999998877655432210                                


Q ss_pred             -----------------------ccceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEEEeec-CC-CCceeeEE-Ec
Q 019482          154 -----------------------HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTR-NS-DEKIELCR-FS  206 (340)
Q Consensus       154 -----------------------~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~-~~-~~~v~~~~-~~  206 (340)
                                             .....++.|+|++++++++. .++.|.++|+.+++.+..+.. .. ..+-..+. ++
T Consensus       318 ~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~  397 (567)
T 1qks_A          318 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH  397 (567)
T ss_dssp             TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEE
T ss_pred             CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeEC
Confidence                                   00123567999999876655 578999999999988777654 11 11112333 57


Q ss_pred             cCCCcceEEEEEecCCcceEEEEECCC-------CcEEeeeeccCCCeeEEEECCCCCEEEEeeC-------CCcEEEEe
Q 019482          207 KDGTKPFLFCTVQRGDKALLAVYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAMGSK-------DGDICVVD  272 (340)
Q Consensus       207 ~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~i~i~d  272 (340)
                      |++...+   ......++.|.++|..+       ++.+..+......-..+..+|+++++.+...       .++|.++|
T Consensus       398 p~~g~v~---~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          398 PTFGPVW---ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             TTTEEEE---EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCCCcEE---EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            8755421   12233568999999988       6777777765444455788999999998763       35899999


Q ss_pred             ccCc-----eEe-ecccc------cccccceeeEEEecCCeEEEEEe-----cCCcEEEEEecCC
Q 019482          273 VKKM-----EIN-HWSKR------LHLGTSIALVEFCPTQRVVLTAS-----KEWGAMITKLTVP  320 (340)
Q Consensus       273 ~~~~-----~~~-~~~~~------~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~  320 (340)
                      +.+.     ... ..+..      ...+..+..+.|+|+|+.+..+.     .++.|.|+|.+..
T Consensus       475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence            9877     211 11110      11135789999999998776653     3689999887543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=2.9e-16  Score=128.44  Aligned_cols=238  Identities=11%  Similarity=0.043  Sum_probs=161.7

Q ss_pred             eEEeeeeecCCCcc-EEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482            7 VTCGSWIKRPENVN-LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (340)
Q Consensus         7 v~~~~w~~~~~~~~-~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (340)
                      ..+++|+|+   ++ +++++.      .++.|..|+.+  +      .  ...+..+...+.+++++|+|+++++...++
T Consensus        30 ~eg~~~d~~---g~~l~~~~~------~~~~i~~~~~~--~------~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~   90 (296)
T 3e5z_A           30 TEGPVYVPA---RSAVIFSDV------RQNRTWAWSDD--G------Q--LSPEMHPSHHQNGHCLNKQGHLIACSHGLR   90 (296)
T ss_dssp             EEEEEEEGG---GTEEEEEEG------GGTEEEEEETT--S------C--EEEEESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred             ccCCeEeCC---CCEEEEEeC------CCCEEEEEECC--C------C--eEEEECCCCCcceeeECCCCcEEEEecCCC
Confidence            457899984   44 555444      34446666654  2      2  233455677899999999999887777678


Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE----cc-------------CCCcEEEEeCCCCceee
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GG-------------VDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~~~d~~~~~~~~  148 (340)
                      .|.+||..+++.........   ......+..++++|+|+++++    ++             ..+.|..++.. ++ ..
T Consensus        91 ~i~~~d~~~g~~~~~~~~~~---~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~  165 (296)
T 3e5z_A           91 RLERQREPGGEWESIADSFE---GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LS  165 (296)
T ss_dssp             EEEEECSTTCCEEEEECEET---TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EE
T ss_pred             eEEEEcCCCCcEEEEeeccC---CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EE
Confidence            89999997766432221110   011245678999999998886    43             13456666654 33 33


Q ss_pred             ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEcc-CCee---EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          149 DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE-DGVA---WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      ....+......++|+|+++.+++.+.++.|++|++. +++.   ...+ ......+..++++++|..      ..+. ++
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l------~v~~-~~  237 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLI------WASA-GD  237 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCE------EEEE-TT
T ss_pred             EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCE------EEEc-CC
Confidence            334444567899999999988777778999999997 4544   2333 334456788999999983      3333 78


Q ss_pred             eEEEEECCCCcEEeeeeccCCCeeEEEE-CCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482          225 LLAVYDISTWNKIGHKRLLRKPASVLSI-SLDGKYLAMGSKDGDICVVDVKKMEIN  279 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~~  279 (340)
                      .|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++.++.+..
T Consensus       238 ~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~  290 (296)
T 3e5z_A          238 GVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE  290 (296)
T ss_dssp             EEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred             eEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence            89999987 777777776666 899999 68999999888764 656666665543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.80  E-value=2.1e-17  Score=138.32  Aligned_cols=217  Identities=11%  Similarity=0.030  Sum_probs=149.9

Q ss_pred             CCeeEEEEcCCCCeEEEEe---------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-
Q 019482           64 GDPMTIAVNPSGDDFVCST---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-  133 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  133 (340)
                      ..+..+++  ||++++...         .++.|.+||+.+++.. .+           ..+..++|+|||++|+.++.+ 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-----------~~~~~~~~SpDg~~la~~~~~~   80 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-----------ENATMPRISPDGKKIAFMRANE   80 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-----------ESCEEEEECTTSSEEEEEEEET
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-----------ccCCCeEECCCCCEEEEEEecc
Confidence            34667777  888887642         2457889998876532 22           356889999999999887654 


Q ss_pred             --C--cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC---------------------------CeEEEEE
Q 019482          134 --G--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---------------------------GSARIWK  182 (340)
Q Consensus       134 --g--~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~v~iwd  182 (340)
                        +  .|.+|++.+++..... .... +..+.|+|||+.|+.++.+                           ..|++||
T Consensus        81 ~~~~~~l~~~~~~~g~~~~l~-~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d  158 (347)
T 2gop_A           81 EKKVSEIWVADLETLSSKKIL-EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD  158 (347)
T ss_dssp             TTTEEEEEEEETTTTEEEEEE-EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred             CCCcceEEEEECCCCceEEEE-cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence              2  4888888877654433 3334 8999999999998887642                           5799999


Q ss_pred             ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC---------cceEEEEECCCCcEEeeeeccCCCeeEEEEC
Q 019482          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD---------KALLAVYDISTWNKIGHKRLLRKPASVLSIS  253 (340)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s  253 (340)
                      +.+++.+..+..  . .+..+.|+|+| .     ++++..         ...|.++|  +++. ..+..+ ..+..+  +
T Consensus       159 ~~~~~~~~~l~~--~-~~~~~~~spdg-~-----~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--s  223 (347)
T 2gop_A          159 TESEEVIEEFEK--P-RFSSGIWHRDK-I-----VVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--D  223 (347)
T ss_dssp             TTTTEEEEEEEE--E-TTCEEEEETTE-E-----EEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--E
T ss_pred             CCCCeEEeeecC--C-CcccccCCCCe-E-----EEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--C
Confidence            988877455554  2 68899999999 3     222221         23455666  4443 333333 444444  9


Q ss_pred             CCCCEEEEeeCC--------CcEEEEeccCceEeecccccccccceee-EEEecCCeEEEEEecCCcEEEEEec
Q 019482          254 LDGKYLAMGSKD--------GDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       254 ~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      |||++|+.++.+        ..|.+||  +++..... ..+ ...+.. +.|+ |+ ++++++.++.++|| ++
T Consensus       224 pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~-~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          224 SDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL-DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             ECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS-TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE
T ss_pred             CCCCEEEEEEccccCCccccceEEEEC--CCceEecc-ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec
Confidence            999998887644        3688888  55544333 233 456776 8999 88 89999999999999 87

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.79  E-value=1.8e-15  Score=123.73  Aligned_cols=242  Identities=9%  Similarity=0.034  Sum_probs=171.0

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  138 (340)
                      +..+...+.+++++++|+.+++...++.|.+||.. +... .+...     .....+.++++++++.++++...++.|..
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~   82 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLP-----TPDAKVMCLTISSDGEVWFTENAANKIGR   82 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECS-----STTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCC-----cccCceeeEEECCCCCEEEeCCCCCeEEE
Confidence            33455679999999999877766667889999987 4332 21111     12367899999999988887777888999


Q ss_pred             EeCCCCcee-eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          139 MHWPSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       139 ~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      ||.. ++.. .........+..+++.++++++++...++.|..||. +++............+..+++++++..     .
T Consensus        83 ~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l-----~  155 (299)
T 2z2n_A           83 ITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNAL-----W  155 (299)
T ss_dssp             ECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCE-----E
T ss_pred             ECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCE-----E
Confidence            9976 3322 222223346889999999988887777889999998 555443322223346889999999874     3


Q ss_pred             EecCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482          218 VQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                      ++...++.|..||. +++.... .......+..++++++|++.++...++.|.+||. +++........+ ...+.++++
T Consensus       156 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~  232 (299)
T 2z2n_A          156 FTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITA  232 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEE
T ss_pred             EEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEE
Confidence            44556788999999 6655432 2223456789999999997777667889999999 665443211222 357889999


Q ss_pred             ecCCeEEEEEecCCcEEEEEe
Q 019482          297 CPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      +++|+++++...++.|..|+.
T Consensus       233 ~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          233 GAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             CSTTCEEEEETTTTEEEEEET
T ss_pred             CCCCCEEEeccCCceEEEECC
Confidence            999997777767788888886

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.79  E-value=8e-18  Score=153.75  Aligned_cols=243  Identities=11%  Similarity=0.013  Sum_probs=161.3

Q ss_pred             cCCCCeeEEEEcCCCCeEEE-----EecCCCEEEEEecCceee-eeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           61 ESEGDPMTIAVNPSGDDFVC-----STTNGGCKLFEVYGGATD-INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~-----~~~d~~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      +|...+..++|||||++||.     |+.+..|++||+.+++.. ....       .. .....++|+|||+.|+.++.|.
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-------~~-~~~~~~~wspDg~~l~~~~~d~  189 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-------EG-GKYATPKWTPDSKGFYYEWLPT  189 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-------SC-CTTCCCEECTTSSEEEEEECCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-------Cc-ccccceEEecCCCEEEEEEecC
Confidence            45556899999999999984     334468999999988753 1111       11 1125789999999999988876


Q ss_pred             c-------------EEEEeCCCCc----eeeccccCccceeEEEecCCCCeEEEeeCCC----eEEEEEccCCeeEEEee
Q 019482          135 H-------------LRIMHWPSLR----IILDEPKAHKSVLDMDFSLDSEFLATTSTDG----SARIWKTEDGVAWTFLT  193 (340)
Q Consensus       135 ~-------------i~~~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~v~iwd~~~~~~~~~~~  193 (340)
                      .             |++|++.+++    .+.....+...+..+.|+|||++|+.++.++    .|++|+..+++. ..+.
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~  268 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV  268 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred             CCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence            5             9999998776    2222323335688999999999988877665    677776655543 3344


Q ss_pred             cCCCCceeeEEEccCCCcceEEEEEec--CCcceEEEEECCCCcE--Eeeeecc--CCCeeEEEECCCCCEEEEeeCCCc
Q 019482          194 RNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLL--RKPASVLSISLDGKYLAMGSKDGD  267 (340)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~--~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~  267 (340)
                      .... .+....+ +++. +++   .+.  ..++.|.+||+.+++.  ...+..+  ...+..++|+ ++.++++...|+.
T Consensus       269 ~~~~-~~~~~~~-~~g~-l~~---~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~  341 (695)
T 2bkl_A          269 KGVG-AKYEVHA-WKDR-FYV---LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT  341 (695)
T ss_dssp             ECSS-CCEEEEE-ETTE-EEE---EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred             cCCC-ceEEEEe-cCCc-EEE---EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            3333 3455555 6666 322   222  2468999999987653  1223322  3457788888 6778888889998


Q ss_pred             EEEEecc-CceEeecccccccccceeeEEEecCCeEEEEE----ecCCcEEEEEecCC
Q 019482          268 ICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTA----SKEWGAMITKLTVP  320 (340)
Q Consensus       268 i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iw~~~~~  320 (340)
                      .+||.+. +++....+.. +....+..++++|+++.++..    ...+.+++|++...
T Consensus       342 ~~l~~~~~~g~~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          342 SEVRVATLKGKPVRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             EEEEEEETTCCEEEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EEEEEEeCCCCeeEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            8888665 3444443322 213568888999998766632    23477888887543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=1.2e-16  Score=133.05  Aligned_cols=238  Identities=8%  Similarity=-0.034  Sum_probs=165.3

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ..|.++.|++++..++....++.++.|.   .+....+..       +...+.+++|+|++++++++..++.|.+||..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISK-------KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEES-------SCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred             cccceeeecCCccceeEEeecccCcccc---cceeEEEec-------cCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence            4578889999888787777788899992   222222221       335678999999999888888889999999988


Q ss_pred             CceeeccccCccceeEEEecCCCCeEEEeeCC----CeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEE
Q 019482          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      ++.......+...+.+++++|+++++++...+    +.|.+||.++++....+. ......+..++++|++..     .+
T Consensus        76 ~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-----~v  150 (333)
T 2dg1_A           76 KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF-----YF  150 (333)
T ss_dssp             CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE-----EE
T ss_pred             CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE-----EE
Confidence            77554333445679999999999888877666    689999988776543332 123346889999999974     23


Q ss_pred             ecCC------cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccC-ceEeec-----cccc
Q 019482          219 QRGD------KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKK-MEINHW-----SKRL  285 (340)
Q Consensus       219 ~~~~------d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~-----~~~~  285 (340)
                      +...      .+.|..+|..+++... +.........++|+|+|+.|+++ +.++.|.+||+.+ +.....     ....
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~  229 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF  229 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC
T ss_pred             EeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec
Confidence            3332      3567777776555432 22233457889999999866554 5578999999963 222111     0000


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      .....+..++++++|+++++...++.|.+|+.
T Consensus       230 ~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          230 TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            10136788999999998888888889999976

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.76  E-value=4.2e-16  Score=142.76  Aligned_cols=251  Identities=11%  Similarity=0.000  Sum_probs=163.7

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      ..+..++|+|   ++..+|++...+ +.....|.+|+++.  ...     ....+..  ..+..++|+|||+.|+.++.+
T Consensus       125 ~~~~~~~~SP---Dg~~la~~~~~~-G~~~~~i~v~d~~t--g~~-----~~~~~~~--~~~~~~~wspDg~~l~~~~~~  191 (710)
T 2xdw_A          125 VALRGYAFSE---DGEYFAYGLSAS-GSDWVTIKFMKVDG--AKE-----LPDVLER--VKFSCMAWTHDGKGMFYNAYP  191 (710)
T ss_dssp             EEEEEEEECT---TSSEEEEEEEET-TCSCEEEEEEETTT--TEE-----EEEEEEE--ECSCCEEECTTSSEEEEEECC
T ss_pred             EEEEEEEECC---CCCEEEEEEcCC-CCceEEEEEEECCC--CCC-----CcccccC--cccceEEEEeCCCEEEEEEEC
Confidence            3578899999   445566554321 11223677777652  111     1112222  236789999999999998877


Q ss_pred             CC----------------EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcEEEEeCCC
Q 019482           85 GG----------------CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHLRIMHWPS  143 (340)
Q Consensus        85 ~~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~  143 (340)
                      +.                |++|++.++.....+....   ..+...+..+.|+|||++|+..+.     +..|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~---~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF---PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC---TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             CccccccccccccCCCCEEEEEECCCCcccceEEecc---CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            65                9999997765321221111   113455789999999999887764     56899999976


Q ss_pred             ------Cc-eeeccccCccceeEEEecCCCCeEEEeeCC----CeEEEEEccCCe--eEEEeecCCC-CceeeEEEccCC
Q 019482          144 ------LR-IILDEPKAHKSVLDMDFSLDSEFLATTSTD----GSARIWKTEDGV--AWTFLTRNSD-EKIELCRFSKDG  209 (340)
Q Consensus       144 ------~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~v~iwd~~~~~--~~~~~~~~~~-~~v~~~~~~~~~  209 (340)
                            +. ....+..+...+.. .|+|+|+.|+..+.+    ..|.+||+.+++  ....+..+.. ..+..+.|++++
T Consensus       269 ~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  347 (710)
T 2xdw_A          269 ESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN  347 (710)
T ss_dssp             SSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred             cccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence                  43 24444444444444 588888877766543    369999998764  2344443433 367889998665


Q ss_pred             CcceEEEEEecCCcc--eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee----CCCcEEEEeccCce
Q 019482          210 TKPFLFCTVQRGDKA--LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS----KDGDICVVDVKKME  277 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~  277 (340)
                      ..     +++...++  .|.+||+.+++.+..+..+...+..+.++|+++.++...    ..+.|++||+.+++
T Consensus       348 ~l-----v~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          348 FL-----VLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EE-----EEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EE-----EEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            53     34444454  577888877877677776777788899999997766442    34789999998876

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.76  E-value=1.2e-14  Score=122.31  Aligned_cols=240  Identities=7%  Similarity=-0.079  Sum_probs=161.1

Q ss_pred             EEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC--CCc
Q 019482           68 TIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGH  135 (340)
Q Consensus        68 ~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~  135 (340)
                      .++++|||++++++.          .++.|.+||..+.+....+................+.|+|||++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            999999999998876          35679999998876655443210001111133468999999999998874  478


Q ss_pred             EEEEeCCCCceeec-cccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEee-----cCCCCceeeEEEccC
Q 019482          136 LRIMHWPSLRIILD-EPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDEKIELCRFSKD  208 (340)
Q Consensus       136 i~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~  208 (340)
                      |.++| .+++.+.. +... .   ++.+.|++ +.+++.+.||.+.++|. +++......     ...........+.++
T Consensus       150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~  223 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence            99999 99887765 4322 2   24455654 45666778999999999 777663322     111111123456666


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcE--Eeeeecc----------CCCeeEEEECCCCCEEEEeeC----------CC
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKRLL----------RKPASVLSISLDGKYLAMGSK----------DG  266 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~----------~~~i~~~~~s~~~~~l~~~~~----------dg  266 (340)
                      +...     +..+..+.+.+.|+.....  +..+...          ......+.++|+++.++++..          ++
T Consensus       224 ~~~~-----~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          224 SGRI-----VWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             CCEE-----EEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            6542     2223567899999875532  2222111          122344789999998888653          35


Q ss_pred             cEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEe-cCCcEEEEEecCCC
Q 019482          267 DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAMITKLTVPA  321 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~iw~~~~~~  321 (340)
                      .|.++|+.+++.+..+..   +....+++|+|||+ .++++. .++.|.++|....+
T Consensus       299 ~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          299 EVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             eEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            799999999999887743   33689999999998 777777 58999999987544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=1.1e-15  Score=123.14  Aligned_cols=203  Identities=8%  Similarity=-0.002  Sum_probs=144.5

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      +...+.+++++++|+.+++.. ++.|.+||........ +.      ......+.+++++++++++++...++.|.+|+.
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~~------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  136 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-LP------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA  136 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-CC------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-ee------cCCcCCCcceEECCCCCEEEEECCCCEEEEEEC
Confidence            345688999999998665555 7789999987654321 11      012356889999999987777777889999986


Q ss_pred             CCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      .+.............+.+++++++++++++...++.|.+||........... .....+..++++++|..     .++..
T Consensus       137 ~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l-----~v~~~  210 (270)
T 1rwi_B          137 GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTV-----YVTEH  210 (270)
T ss_dssp             TCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCE-----EEEET
T ss_pred             CCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-cCCCCceEEEECCCCCE-----EEEEC
Confidence            6544333222233467889999999877777777899999987665443322 22246889999999863     45556


Q ss_pred             CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  278 (340)
                      .++.|.+||................+..++++|+|+++++...++.|+++++...+.
T Consensus       211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            678899999876544322222235688999999999888888899999999876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.75  E-value=4e-16  Score=142.52  Aligned_cols=242  Identities=13%  Similarity=0.026  Sum_probs=155.4

Q ss_pred             cCCCCeEEEEecCC---CEEEEEec--CceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-----EccCCCcEEEEeC
Q 019482           72 NPSGDDFVCSTTNG---GCKLFEVY--GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-----AGGVDGHLRIMHW  141 (340)
Q Consensus        72 ~~~~~~l~~~~~d~---~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-----~~~~dg~i~~~d~  141 (340)
                      +|+|++++....++   .-.+|...  .++ ...+.........|...+..++|||||++|+     .|+.+..|++||+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQ-EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSC-CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCC-cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            47899888776554   35566554  332 2222221111112445688999999999998     5555678999999


Q ss_pred             CCCcee-eccccCccceeEEEecCCCCeEEEeeCCCe-------------EEEEEccCCee--EEEeec-CCCCceeeEE
Q 019482          142 PSLRII-LDEPKAHKSVLDMDFSLDSEFLATTSTDGS-------------ARIWKTEDGVA--WTFLTR-NSDEKIELCR  204 (340)
Q Consensus       142 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-------------v~iwd~~~~~~--~~~~~~-~~~~~v~~~~  204 (340)
                      .+++.. ..... ......++|+|||+.|+.++.|..             |++|++.+++.  ...+.. .+...+..+.
T Consensus       155 ~tg~~~~~~~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          155 DSGEWSKVDVIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TTCCBCSSCCBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCCcCCcccC-cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            998865 21111 112268999999999999988766             99999987763  122221 2234678999


Q ss_pred             EccCCCcceEEEEEecC-CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee---CCCcEEEEeccCceE--
Q 019482          205 FSKDGTKPFLFCTVQRG-DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS---KDGDICVVDVKKMEI--  278 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~--  278 (340)
                      |+|||+++++  ..... ....|.++|..+++. ..+..+...+....+ ++|++++...   .++.|.+||+.+++.  
T Consensus       234 ~SpDG~~l~~--~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          234 LSRDGKYLFV--YILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             ECTTSCCEEE--EEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred             ECCCCCEEEE--EEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccC
Confidence            9999997322  11111 234788887766553 344444445556666 6666444443   257899999987653  


Q ss_pred             eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          279 NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       279 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ...+...+....+.+++|+ ++.++++...|+..+||.++..
T Consensus       310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  350 (695)
T 2bkl_A          310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK  350 (695)
T ss_dssp             CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred             CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence            1122222213468889998 7789999999999999988754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.75  E-value=5.5e-14  Score=114.83  Aligned_cols=277  Identities=8%  Similarity=-0.040  Sum_probs=178.8

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      ..+.++++.++   +.+.+...      .++.|..++.+   ...     ....+..+...+.++++.++|..+++...+
T Consensus        20 ~~p~~i~~d~~---g~l~v~~~------~~~~v~~~~~~---~~~-----~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~   82 (300)
T 2qc5_A           20 SGPYGITSSED---GKVWFTQH------KANKISSLDQS---GRI-----KEFEVPTPDAKVMCLIVSSLGDIWFTENGA   82 (300)
T ss_dssp             CCEEEEEECTT---SCEEEEET------TTTEEEEECTT---SCE-----EEEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred             CCcceeeECCC---CCEEEEcC------CCCeEEEECCC---Cce-----EEEECCCCCCcceeEEECCCCCEEEEecCC
Confidence            35667777763   34555322      23445555433   211     112233344679999999999877776667


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec-cccCccceeEEEec
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD-EPKAHKSVLDMDFS  163 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~i~~~~~~  163 (340)
                      +.|..+|.. ++.. .+...     .....+.++++.++++++++...++.|..+|.. ++.... .......+..+++.
T Consensus        83 ~~v~~~d~~-g~~~-~~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           83 NKIGKLSKK-GGFT-EYPLP-----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             TEEEEECTT-SCEE-EEECS-----STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred             CeEEEECCC-CCeE-EecCC-----CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence            789999877 4432 22111     123568999999999888877768889999987 554322 22233468899999


Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee-eec
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH-KRL  242 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~  242 (340)
                      ++++++++...++.|..+|. +++............+..+++++++..     .++....+.|.+||. +++.... ...
T Consensus       155 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~~~~~~~i~~~~~-~g~~~~~~~~~  227 (300)
T 2qc5_A          155 SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL-----WFVEIMGNKIGRITT-TGEISEYDIPT  227 (300)
T ss_dssp             TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE-----EEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE-----EEEccCCCEEEEEcC-CCcEEEEECCC
Confidence            99997776666789999998 555443222223346889999999873     344455678999998 4444322 222


Q ss_pred             cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          243 LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       243 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      ....+..++++++|++.++...++.|..||. +++......... ...+.+++++++|+++++.. . .|..++.
T Consensus       228 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          228 PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            3456789999999987776666789999998 444332211112 34688999999998666665 4 5555553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.75  E-value=3.7e-15  Score=123.53  Aligned_cols=240  Identities=5%  Similarity=-0.083  Sum_probs=159.7

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (340)
                      .++.|.+++..        +......+. ....+..++++++++.+++...++.|.+||..+.+....+.....  ....
T Consensus        62 ~~~~v~viD~~--------t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~--~~~~  130 (328)
T 3dsm_A           62 NSHVIFAIDIN--------TFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM--DMES  130 (328)
T ss_dssp             GGTEEEEEETT--------TCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC--CTTT
T ss_pred             CCCEEEEEECc--------ccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc--cccC
Confidence            34567777665        233333343 346789999999985444443788999999998876554432110  0011


Q ss_pred             CCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC----------CeEEEE
Q 019482          113 GPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD----------GSARIW  181 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~v~iw  181 (340)
                      .....+++ .+++.+++.. .++.|.++|+.+++....+... .....+.++|+|++++++..+          +.|.++
T Consensus       131 ~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          131 GSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             CBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             CCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence            24456677 4444444433 4889999999998876655433 345789999999977777654          789999


Q ss_pred             EccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee--eeccCCCeeEEEECCC-CCE
Q 019482          182 KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLD-GKY  258 (340)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~-~~~  258 (340)
                      |.++++....+.......+..++|+|+++.+     .....  .|.+||..+++....  ..........++++|+ +++
T Consensus       209 d~~t~~v~~~~~~~~g~~p~~la~~~d~~~l-----yv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~l  281 (328)
T 3dsm_A          209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTL-----YWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEV  281 (328)
T ss_dssp             ETTTTEEEEEEECCTTCCCEEEEECTTSCEE-----EEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCE
T ss_pred             ECCCCeEEEEEecCCCCCceeEEEecCCCEE-----EEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeE
Confidence            9999988777654333468999999999863     33322  899999988775321  1111356788999995 555


Q ss_pred             EEEe----eCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482          259 LAMG----SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       259 l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                      .++.    ..++.|.+||.. ++.+..+..   +.....++|
T Consensus       282 yva~~~~y~~~~~V~v~d~~-g~~~~~i~~---G~~P~~~~~  319 (328)
T 3dsm_A          282 YVADAIDYQQQGIVYRYSPQ-GKLIDEFYV---GIIPGAFCW  319 (328)
T ss_dssp             EEEECTTSSSEEEEEEECTT-CCEEEEEEE---EESEEEEEE
T ss_pred             EEEcccccccCCEEEEECCC-CCEEEEEEe---ccCcceEEE
Confidence            5555    568899999998 777776643   234556665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.74  E-value=2.5e-15  Score=124.85  Aligned_cols=266  Identities=11%  Similarity=-0.017  Sum_probs=173.5

Q ss_pred             CCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeecc
Q 019482           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLA  103 (340)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~  103 (340)
                      ++.+.+++..        +......+.....+ . ++++|||++++++.          .++.|.+||..+.+....+..
T Consensus        58 ~~~V~ViD~~--------t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v  127 (386)
T 3sjl_D           58 VTQQFVIDGE--------AGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL  127 (386)
T ss_dssp             SEEEEEEETT--------TTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CCEEEEEECC--------CCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEEC
Confidence            3456666554        33444445544444 4 99999999888775          356799999999887666533


Q ss_pred             ccCCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEE
Q 019482          104 KKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW  181 (340)
Q Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iw  181 (340)
                      ..............+.|+|||++++++..  ++.|.++|+.+++.+..+.-..  . ...+....+.+++.+.||++.+.
T Consensus       128 ~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v  204 (386)
T 3sjl_D          128 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKV  204 (386)
T ss_dssp             TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEE
T ss_pred             CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEE
Confidence            21011111234567999999999888764  6899999999998877664321  1 12232244567777788999888


Q ss_pred             EccC-CeeEEEeecCC---CCce-eeEEEc-cCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeec----------c
Q 019482          182 KTED-GVAWTFLTRNS---DEKI-ELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRL----------L  243 (340)
Q Consensus       182 d~~~-~~~~~~~~~~~---~~~v-~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~----------~  243 (340)
                      ++.+ ++.........   ..++ ....|. ++|+.      +..+.++.+.+.|+.+..  .+.....          .
T Consensus       205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~------~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL------VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  278 (386)
T ss_dssp             ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE------EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             ECCCCCeEEEeecceeccccccccccceeEcCCCcE------EEEeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence            8876 55432221111   1122 224564 67753      334447899999997664  2222220          1


Q ss_pred             CCCeeEEEECCCCCEEEEeeC----------CCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEE-EecCCc
Q 019482          244 RKPASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLT-ASKEWG  311 (340)
Q Consensus       244 ~~~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~-~~~dg~  311 (340)
                      ......++++|+++.+++...          .+.|.++|+.+++.+..+..+   ..++++++++|++ +|++ ...++.
T Consensus       279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~  355 (386)
T 3sjl_D          279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKT  355 (386)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTE
T ss_pred             CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCe
Confidence            123445778999998888753          257999999999999887653   4789999999996 5655 455899


Q ss_pred             EEEEEecCCC
Q 019482          312 AMITKLTVPA  321 (340)
Q Consensus       312 i~iw~~~~~~  321 (340)
                      |.++|....+
T Consensus       356 VsViD~~t~k  365 (386)
T 3sjl_D          356 LYIHDAESGE  365 (386)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            9999986544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.74  E-value=8.9e-15  Score=117.87  Aligned_cols=212  Identities=12%  Similarity=0.110  Sum_probs=157.3

Q ss_pred             cEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceee
Q 019482           20 NLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD   98 (340)
Q Consensus        20 ~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~   98 (340)
                      ++++.++      .++.|.+|+..        +......+..+. ..+.++.++|+|++++  +.++.|+.||. +++..
T Consensus         6 ~~lv~~~------~~~~v~~~d~~--------tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~   68 (276)
T 3no2_A            6 HLLVGGS------GWNKIAIINKD--------TKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGREL   68 (276)
T ss_dssp             EEEEECT------TCSEEEEEETT--------TTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE
T ss_pred             cEEEeeC------CCCEEEEEECC--------CCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE
Confidence            5666555      45668888764        444445566665 4789999999999888  34566999998 67766


Q ss_pred             eeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeeccc------cCccceeEEEecCCCCeEEE
Q 019482           99 INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILDEP------KAHKSVLDMDFSLDSEFLAT  171 (340)
Q Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~~------~~~~~i~~~~~~~~~~~l~~  171 (340)
                      ..+...      ....+.++.+.++|+.+++.+. ++.|..+|. +++.+..+.      .++.....+.+.++|+++++
T Consensus        69 W~~~~~------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~  141 (276)
T 3no2_A           69 WNIAAP------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP  141 (276)
T ss_dssp             EEEECC------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred             EEEcCC------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence            665431      2246788999999999998876 777888875 666554443      22234556788999999999


Q ss_pred             eeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC------C
Q 019482          172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------K  245 (340)
Q Consensus       172 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------~  245 (340)
                      ...++.|..||.+ ++.+.++...  ..+.++...+++..     ++++..++.|..+|..+++.+..+....      .
T Consensus       142 ~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~-----~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~  213 (276)
T 3no2_A          142 LFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDC-----LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLF  213 (276)
T ss_dssp             ETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCE-----EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCS
T ss_pred             ecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCE-----EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccc
Confidence            9999999999987 9988888643  34677888899885     5666677789999999999887776432      1


Q ss_pred             CeeEEEECCCCCEEEEee
Q 019482          246 PASVLSISLDGKYLAMGS  263 (340)
Q Consensus       246 ~i~~~~~s~~~~~l~~~~  263 (340)
                      .+..+...++|+.+++..
T Consensus       214 ~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          214 FVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             EEEEEEECTTSCEEEEEE
T ss_pred             ccccceEcCCCCEEEEec
Confidence            267788888998887764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=6e-15  Score=130.18  Aligned_cols=234  Identities=10%  Similarity=0.022  Sum_probs=168.7

Q ss_pred             CCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC--CCceeecc
Q 019482           73 PSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP--SLRIILDE  150 (340)
Q Consensus        73 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~--~~~~~~~~  150 (340)
                      |.+..+++...++.|.++|..+++....+..        ...+..+.|+|||+++++++.|+.|.+||+.  +++.+..+
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~--------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT--------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC--------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC--------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEE
Confidence            4445666777789999999999877665532        2356789999999999999999999999995  77766666


Q ss_pred             ccCccceeEEEec----CCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCC----------CCceeeEEEccCCCcceEE
Q 019482          151 PKAHKSVLDMDFS----LDSEFLATTST-DGSARIWKTEDGVAWTFLTRNS----------DEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       151 ~~~~~~i~~~~~~----~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~~~~  215 (340)
                      .... ....++|+    |||+++++++. ++++.++|..+.+.+..+....          ...+..+..++++...   
T Consensus       237 ~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~---  312 (567)
T 1qks_A          237 KIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF---  312 (567)
T ss_dssp             ECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE---
T ss_pred             ecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE---
Confidence            5433 46789999    69998887764 5899999999999887765321          1256788888887642   


Q ss_pred             EEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccc-ccccccee
Q 019482          216 CTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKR-LHLGTSIA  292 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~~~i~  292 (340)
                       ++....++.|.++|....+.+.... ........+.|+|+|++++++. .++.|.++|+.+++....+.. +....+-.
T Consensus       313 -vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~  391 (567)
T 1qks_A          313 -IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR  391 (567)
T ss_dssp             -EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred             -EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcc
Confidence             4555778999999998765332222 2234567889999999987765 578899999999987766543 21111223


Q ss_pred             eEE-EecCC-eEEEEEe-cCCcEEEEEecC
Q 019482          293 LVE-FCPTQ-RVVLTAS-KEWGAMITKLTV  319 (340)
Q Consensus       293 ~~~-~~~~~-~~l~~~~-~dg~i~iw~~~~  319 (340)
                      .+. ++|++ ..+++.. .++.|.+++...
T Consensus       392 g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          392 GANFVHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             CEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             ceeeECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            333 57874 4445543 468999999875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.74  E-value=1e-14  Score=120.11  Aligned_cols=248  Identities=13%  Similarity=0.049  Sum_probs=166.2

Q ss_pred             ecCCCCeeEEEEcCCCCeEEE-------EecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEcc
Q 019482           60 DESEGDPMTIAVNPSGDDFVC-------STTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGG  131 (340)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~-------~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~  131 (340)
                      ...-..+.+++|+++|..+++       ...++.|.+||..+++........   ...+...+.+++++++ ++++++..
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~~~~~~~~~~i~~~~~~g~l~v~~~   90 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE---VNGYGGIPAGCQCDRDANQLFVADM   90 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE---ETTEECCEEEEEECSSSSEEEEEET
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecc---cCCCCCCCceEEEecCCCcEEEEEC
Confidence            344556889999999987777       577788999998776543211100   0012356889999999 76555544


Q ss_pred             CCCcEEEEeCCCCceeec-ccc----CccceeEEEecCCCCeEEEeeCC---------------CeEEEEEccCCeeEEE
Q 019482          132 VDGHLRIMHWPSLRIILD-EPK----AHKSVLDMDFSLDSEFLATTSTD---------------GSARIWKTEDGVAWTF  191 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~-~~~----~~~~i~~~~~~~~~~~l~~~~~d---------------~~v~iwd~~~~~~~~~  191 (340)
                       .+.|.+||.. ++.... ...    ....+.+++++++|+++++...+               +.|..+|.. ++....
T Consensus        91 -~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (314)
T 1pjx_A           91 -RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV  167 (314)
T ss_dssp             -TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred             -CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence             4479999987 654332 211    11357899999999887776654               567777765 544332


Q ss_pred             eecCCCCceeeEEEc----cCCCcceEEEEEecCCcceEEEEECC-CCcE-----EeeeeccC-CCeeEEEECCCCCEEE
Q 019482          192 LTRNSDEKIELCRFS----KDGTKPFLFCTVQRGDKALLAVYDIS-TWNK-----IGHKRLLR-KPASVLSISLDGKYLA  260 (340)
Q Consensus       192 ~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~-----~~~~~~~~-~~i~~~~~s~~~~~l~  260 (340)
                      .. . ......++|+    |+++.+    .++...++.|.+||.. +++.     ...+..+. .....++++++|++++
T Consensus       168 ~~-~-~~~~~~i~~~~~~d~dg~~l----~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v  241 (314)
T 1pjx_A          168 DT-A-FQFPNGIAVRHMNDGRPYQL----IVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             EE-E-ESSEEEEEEEECTTSCEEEE----EEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             cc-C-CCCcceEEEecccCCCCCEE----EEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEE
Confidence            22 1 2346789999    998642    3444567899999986 4432     11222222 4578899999999888


Q ss_pred             EeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEecCCcEEEEEecCCC
Q 019482          261 MGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       261 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +...++.|.+||..+++....+. .+ ...+.+++|+|+++ ++++...++.|..+++..+.
T Consensus       242 ~~~~~~~i~~~d~~~g~~~~~~~-~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g  301 (314)
T 1pjx_A          242 ANWGSSHIEVFGPDGGQPKMRIR-CP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEE-CS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEcCCCEEEEEcCCCCcEeEEEe-CC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence            87778899999998676554442 22 35789999999998 45555667889998887544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.73  E-value=4.2e-16  Score=143.38  Aligned_cols=242  Identities=12%  Similarity=0.033  Sum_probs=156.5

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCc-
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGH-  135 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-  135 (340)
                      |...+..++|||||++||.+..+     ..|++||+.+++.......        ...+..++|+|| +.|+.++.++. 
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~--------~~~~~~~~wspD-~~l~~~~~~~~~  231 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK--------WVKFSGLAWLGN-DALLYSRFAEPK  231 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE--------EEESCCCEESTT-SEEEEEECCCC-
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC--------CceeccEEEECC-CEEEEEEecCcc
Confidence            44468899999999999877654     3599999998876432111        112346899999 88888776554 


Q ss_pred             -------------EEEEeCCCCce----eeccccCccceeEEEecCCCCeEEEeeCCC-----eEEEEEccCC--eeEEE
Q 019482          136 -------------LRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDG--VAWTF  191 (340)
Q Consensus       136 -------------i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~--~~~~~  191 (340)
                                   |++|++.++..    +.....+...+..+.|+|||++|+..+.++     .|++||+.++  ++...
T Consensus       232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~  311 (741)
T 1yr2_A          232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA  311 (741)
T ss_dssp             -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE
T ss_pred             cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE
Confidence                         89999877652    222222223578999999999988777543     8999999877  31445


Q ss_pred             eecCCCCceeeEEEccCCCcceEEEEEe--cCCcceEEEEECCCC--cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCc
Q 019482          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGD  267 (340)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  267 (340)
                      +..... ..... ++|+++.+++   .+  ...+..|.+||+.++  +....+..+...+..+.++ ++.++++...|+.
T Consensus       312 l~~~~~-~~~~~-~~~dg~~l~~---~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          312 LIPDLK-AQWDF-VDGVGDQLWF---VSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EECSSS-SCEEE-EEEETTEEEE---EECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE
T ss_pred             ecCCCC-ceEEE-EeccCCEEEE---EECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence            544433 33344 3488887432   22  123567999999875  2333333344456677777 5667788888988


Q ss_pred             EEEEecc-CceEeecccccccccceeeEEEecCCeEEEEE----ecCCcEEEEEecC
Q 019482          268 ICVVDVK-KMEINHWSKRLHLGTSIALVEFCPTQRVVLTA----SKEWGAMITKLTV  319 (340)
Q Consensus       268 i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iw~~~~  319 (340)
                      .+||.+. +++....+.... ...+..++++|+++.|+..    ...+.+++|++..
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            7777554 344444443222 3578899999998755522    2347788888754

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.72  E-value=6.8e-14  Score=119.25  Aligned_cols=239  Identities=7%  Similarity=-0.081  Sum_probs=163.8

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC--cEEEEeC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHW  141 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~  141 (340)
                      ..+..++|+++|+++++...++.|++||..++........        ..... ++|+|+++.|+++..++  .|.+++.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--------~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--------FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--------CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEG
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--------CCCCc-eeEecCCCcEEEEecCCCceEEEEEc
Confidence            4588999999999777777778999999987765433221        12233 89999999888887765  7888887


Q ss_pred             CCCceeecc----ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe---ecCCCCce-e-eEEEccCCCcc
Q 019482          142 PSLRIILDE----PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL---TRNSDEKI-E-LCRFSKDGTKP  212 (340)
Q Consensus       142 ~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~---~~~~~~~v-~-~~~~~~~~~~~  212 (340)
                      ..+.....+    ......+.+++++|++..|+.+..++.|+.||..++......   .......- . .++|+|++..+
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l  281 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF  281 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence            655432222    113346788999995555555777889999999876543220   11111111 3 89999965542


Q ss_pred             eEEEEEecCCcceEEEEECCCCcEEeeeeccC---------------CCeeEEEECCCCCEEEEee-CCCcEEEEeccCc
Q 019482          213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------------KPASVLSISLDGKYLAMGS-KDGDICVVDVKKM  276 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~  276 (340)
                          .++...++.|+.||....  +..+....               .....++++|+|+++++-. .++.|+.|++.++
T Consensus       282 ----yv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          282 ----YMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             ----EEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             ----EEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence                455667889999997643  22222221               3467899999999777777 7899999998777


Q ss_pred             eEeeccccc-c-----------cccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          277 EINHWSKRL-H-----------LGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       277 ~~~~~~~~~-~-----------~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      +........ .           .-.....++++++|.++++-..++.|+.+.+
T Consensus       356 ~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          356 YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            654332110 0           0135789999999998888888888887765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.72  E-value=1.1e-13  Score=112.96  Aligned_cols=240  Identities=9%  Similarity=0.023  Sum_probs=168.6

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      .....+.++++.++|+.+++...++.|.+||.. ++... +...     .....+.++++.++++++++...++.|..+|
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~-----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP-----TPDAKVMCLIVSSLGDIWFTENGANKIGKLS   89 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS-----STTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC-----CCCCcceeEEECCCCCEEEEecCCCeEEEEC
Confidence            345678999999999977777677889999987 44322 1111     1235789999999998777776678899999


Q ss_pred             CCCCceee-ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          141 WPSLRIIL-DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       141 ~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      .. ++... ........+..+++.++++++++...++.|..+|.. ++............+..+++.++++.     .++
T Consensus        90 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l-----~v~  162 (300)
T 2qc5_A           90 KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL-----WFT  162 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE-----EEE
T ss_pred             CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE-----EEE
Confidence            77 55432 222223568899999999888877768899999987 55543222223346889999999983     345


Q ss_pred             cCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          220 RGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      ...++.|..+|. +++.... .......+..++++++|++.++....+.|.+||. +++......... ...+.++++++
T Consensus       163 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~d~  239 (300)
T 2qc5_A          163 ENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTP-NARPHAITAGK  239 (300)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECS
T ss_pred             ecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCC-CCCceEEEECC
Confidence            555788999998 5554322 1123346789999999987777666778999998 444433221222 35688999999


Q ss_pred             CCeEEEEEecCCcEEEEEe
Q 019482          299 TQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~  317 (340)
                      +|+++++...++.|..++.
T Consensus       240 ~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          240 NSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TTCEEEEETTTTEEEEECT
T ss_pred             CCCEEEeccCCCeEEEECC
Confidence            9997777767788888875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.70  E-value=1.1e-14  Score=123.16  Aligned_cols=265  Identities=9%  Similarity=-0.054  Sum_probs=174.9

Q ss_pred             CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeeccc
Q 019482           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAK  104 (340)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~  104 (340)
                      +.+.+++..        +......+..-..+  .++++|||++++++.          .++.|.++|..+.+....+...
T Consensus        99 ~~VsVID~~--------t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~  168 (426)
T 3c75_H           99 TQQFVIDGS--------TGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELP  168 (426)
T ss_dssp             EEEEEEETT--------TTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEET
T ss_pred             CeEEEEECC--------CCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECC
Confidence            567777665        44444445544444  899999999888776          3568999999998876665321


Q ss_pred             cCCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEE
Q 019482          105 KMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIW  181 (340)
Q Consensus       105 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iw  181 (340)
                      .............+.|+|||++++++..  ++.|.+.|+.+++.+..+.-...    ....|++ ..+++.+.||++.+.
T Consensus       169 g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V  244 (426)
T 3c75_H          169 DAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARV  244 (426)
T ss_dssp             TCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEE
T ss_pred             CccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEE
Confidence            0001111133467899999999998764  57899999999988766643221    2334433 455666678888888


Q ss_pred             EccCCeeEEE----eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE--eeeec----------cCC
Q 019482          182 KTEDGVAWTF----LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI--GHKRL----------LRK  245 (340)
Q Consensus       182 d~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~----------~~~  245 (340)
                      +..+++....    +..........+.+.+++..+     +.....+.+.+.|.......  ..+..          ...
T Consensus       245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~-----~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~  319 (426)
T 3c75_H          245 DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRL-----VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG  319 (426)
T ss_dssp             ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEE-----EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred             ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEE-----EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence            8765554422    111111112345678888863     33345678999998765421  11110          011


Q ss_pred             CeeEEEECCCCCEEEEeeC----------CCcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEe-cCCcEE
Q 019482          246 PASVLSISLDGKYLAMGSK----------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-KEWGAM  313 (340)
Q Consensus       246 ~i~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~dg~i~  313 (340)
                      ....++++|+++.+++...          ++.|.++|+.+.+.+..+..+   ....+++|+|||+ +++++. .++.|.
T Consensus       320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence            2233789999988877643          357999999999998877543   3689999999998 888877 589999


Q ss_pred             EEEecCCC
Q 019482          314 ITKLTVPA  321 (340)
Q Consensus       314 iw~~~~~~  321 (340)
                      |+|+...+
T Consensus       397 VID~~t~k  404 (426)
T 3c75_H          397 IYDAATGE  404 (426)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCC
Confidence            99986544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.69  E-value=1.5e-13  Score=112.30  Aligned_cols=230  Identities=8%  Similarity=-0.002  Sum_probs=152.4

Q ss_pred             ecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482           60 DESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (340)
Q Consensus        60 ~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  138 (340)
                      ..+..-..+..|+|++. .+++...++.|..||..++.... .        .....+.+++++++|+++++ . ++.|.+
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--------~~~~~~~~i~~~~dG~l~v~-~-~~~l~~   77 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V--------TMDAPVSSVALRQSGGYVAT-I-GTKFCA   77 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E--------ECSSCEEEEEEBTTSSEEEE-E-TTEEEE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E--------eCCCceEEEEECCCCCEEEE-E-CCeEEE
Confidence            33444566899999655 55566667889999998765421 1        12357899999999995554 3 567999


Q ss_pred             EeCCCCceeecccc----CccceeEEEecCCCCeEEEeeCC---------CeEEEEEccC-CeeEEEeecCCCCceeeEE
Q 019482          139 MHWPSLRIILDEPK----AHKSVLDMDFSLDSEFLATTSTD---------GSARIWKTED-GVAWTFLTRNSDEKIELCR  204 (340)
Q Consensus       139 ~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~-~~~~~~~~~~~~~~v~~~~  204 (340)
                      ||.++++.......    ....+..++++|+|+++++...+         ..-.+|.+.. ++... +... ......++
T Consensus        78 ~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~-~~~pngi~  155 (297)
T 3g4e_A           78 LNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQ-VDISNGLD  155 (297)
T ss_dssp             EETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEE-ESBEEEEE
T ss_pred             EECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eeec-cccccceE
Confidence            99887764322111    12357899999999976654321         2345555543 33322 2222 23468899


Q ss_pred             EccCCCcceEEEEEecCCcceEEEEEC--CCCcEE-----eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          205 FSKDGTKPFLFCTVQRGDKALLAVYDI--STWNKI-----GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~~i~i~d~--~~~~~~-----~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      |+|+++.+    .++...++.|.+||+  .++...     ..+.........++++++|++.++...++.|..||..+++
T Consensus       156 ~spdg~~l----yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          156 WSLDHKIF----YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             ECTTSCEE----EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred             EcCCCCEE----EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence            99999863    345566789999987  455431     1122223457889999999888877778889999999888


Q ss_pred             EeecccccccccceeeEEEe-cCCeEEEEEec
Q 019482          278 INHWSKRLHLGTSIALVEFC-PTQRVVLTASK  308 (340)
Q Consensus       278 ~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~  308 (340)
                      .+..+.. + ...+++++|. ||++.|..++.
T Consensus       232 ~~~~i~~-p-~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          232 RLQTVKL-P-VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEEEEC-S-SSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEEEC-C-CCCceEEEEeCCCCCEEEEEcC
Confidence            7776643 2 2478999998 88876654443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.66  E-value=3.3e-14  Score=130.79  Aligned_cols=241  Identities=13%  Similarity=0.062  Sum_probs=153.5

Q ss_pred             cCCCCeEEEEecCC---CEEEEEecCc----eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEE
Q 019482           72 NPSGDDFVCSTTNG---GCKLFEVYGG----ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIM  139 (340)
Q Consensus        72 ~~~~~~l~~~~~d~---~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~  139 (340)
                      +|+|++++....++   .-.+|.....    .....+.........+...+..++|||||++|+.+..+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            48999888766554   3566766532    22222211111111123367889999999999876543     469999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCe--------------EEEEEccCCee--EEEeec-CCCCceee
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGS--------------ARIWKTEDGVA--WTFLTR-NSDEKIEL  202 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~--------------v~iwd~~~~~~--~~~~~~-~~~~~v~~  202 (340)
                      |+.+++.+... .....+..++|+|| +.|+.++.++.              |++|++.+++.  ...+.. .+...+..
T Consensus       195 dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          195 GVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             ETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             ECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            99998865431 11123468999999 98888876554              88999877652  222221 11224789


Q ss_pred             EEEccCCCcceEEEEEecC--CcceEEEEECCCC--cEEeeeeccCCCeeEEEECCCCCEEEEeeCC----CcEEEEecc
Q 019482          203 CRFSKDGTKPFLFCTVQRG--DKALLAVYDISTW--NKIGHKRLLRKPASVLSISLDGKYLAMGSKD----GDICVVDVK  274 (340)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~  274 (340)
                      +.|+|||+++++  .....  ....|.+||+.++  +....+..+....... ++|+|+.|+..+.+    +.|.+||+.
T Consensus       273 ~~~SpDG~~l~~--~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          273 ASVSSDGRWVVI--TSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEECTTSCEEEE--EEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEECCCCCEEEE--EEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            999999997432  11111  3568999999876  3134444444444444 35899988887653    459999998


Q ss_pred             Cc--eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          275 KM--EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       275 ~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ++  +....+ ..+ ...+.+++|+ ++.++++...|+..+||.++..
T Consensus       350 ~~~~~~~~l~-~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          350 GSTPRFDTVV-PES-KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             SSSCEEEEEE-CCC-SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETT
T ss_pred             CCccccEEEe-cCC-CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence            74  333322 233 4467788887 6788899999999999988753

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.65  E-value=4.7e-13  Score=112.01  Aligned_cols=287  Identities=10%  Similarity=0.056  Sum_probs=172.8

Q ss_pred             ccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEE-----------c--CCCCeEEE-EecC
Q 019482           19 VNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV-----------N--PSGDDFVC-STTN   84 (340)
Q Consensus        19 ~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-----------~--~~~~~l~~-~~~d   84 (340)
                      ..++.+............+.+.++++....+. .-.....+..-.+......|           +  +++++|++ +..+
T Consensus        27 ~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~-~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s  105 (462)
T 2ece_A           27 LAYVACLYTGTGINRADFIAVVDVNPKSETYS-KIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRS  105 (462)
T ss_dssp             EEEEEEECTTTTCCCCCEEEEEECCTTSTTTT-SEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTT
T ss_pred             EEEEEeeccCCCCCCCCeEEEEECCCCCCCcc-eEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCC
Confidence            33444443322233566678888876554332 11222222222223444444           6  77887765 5566


Q ss_pred             CCEEEEEecCc----eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------CcEEEEeCCCCceeeccccCc
Q 019482           85 GGCKLFEVYGG----ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        85 ~~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~  154 (340)
                      +.|.++|+.+.    +....+...+...-........+..+|+| .++++..+      |.|.++|.++.+.+.+.....
T Consensus       106 ~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~  184 (462)
T 2ece_A          106 SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDR  184 (462)
T ss_dssp             CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBC
T ss_pred             CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCC
Confidence            88999999755    33322210000000011244667888999 66666555      789999999999887775332


Q ss_pred             c---ceeEEEecCCCCeEEEee-------------------CCCeEEEEEccCCeeEEEeecC-CCCceeeEEE--ccCC
Q 019482          155 K---SVLDMDFSLDSEFLATTS-------------------TDGSARIWKTEDGVAWTFLTRN-SDEKIELCRF--SKDG  209 (340)
Q Consensus       155 ~---~i~~~~~~~~~~~l~~~~-------------------~d~~v~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~~~~  209 (340)
                      .   --..+-|+|+++.+++..                   .+.+|.+||+.+++.+.++... .......+.|  +|++
T Consensus       185 ~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg  264 (462)
T 2ece_A          185 GDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTK  264 (462)
T ss_dssp             TTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTC
T ss_pred             CCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCC
Confidence            2   234578899999888884                   3689999999999888888753 2223455655  9999


Q ss_pred             CcceEEEEEe-cCCcceEEEEECCCCcE--Eeee--ec----------------cCCCeeEEEECCCCCEEEEeeC-CCc
Q 019482          210 TKPFLFCTVQ-RGDKALLAVYDISTWNK--IGHK--RL----------------LRKPASVLSISLDGKYLAMGSK-DGD  267 (340)
Q Consensus       210 ~~~~~~~~~~-~~~d~~i~i~d~~~~~~--~~~~--~~----------------~~~~i~~~~~s~~~~~l~~~~~-dg~  267 (340)
                      ++.|+.+-++ ...+++|.+|..+.++.  ++.+  ..                .......+.+||||++|+++.. .+.
T Consensus       265 ~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~  344 (462)
T 2ece_A          265 LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE  344 (462)
T ss_dssp             CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE
T ss_pred             CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE
Confidence            9755433211 11456777666544321  1111  00                0234678999999999998875 578


Q ss_pred             EEEEeccC---ceEeeccccccc------------ccceeeEEEecCCeEEEEEe
Q 019482          268 ICVVDVKK---MEINHWSKRLHL------------GTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       268 i~i~d~~~---~~~~~~~~~~~~------------~~~i~~~~~~~~~~~l~~~~  307 (340)
                      |.+||+..   .+.+..+..+..            ...-..++++|||++|+++.
T Consensus       345 VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          345 VRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999853   234433322200            01358899999999998888

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.64  E-value=1.2e-12  Score=108.33  Aligned_cols=222  Identities=13%  Similarity=0.023  Sum_probs=145.8

Q ss_pred             CeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           65 DPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        65 ~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ...+..|+|++. .+++...++.|..||..+++... +.        ....+.++.|+++++++++. .+ .|.+||..+
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--------~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~  118 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA--------LPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT  118 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE--------CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE--------CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC
Confidence            456889999755 45566667889999988765422 11        22578999999999877654 34 499999887


Q ss_pred             Cceeecccc---C-ccceeEEEecCCCCeEEEeeC------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          144 LRIILDEPK---A-HKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       144 ~~~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      ++.......   . ...+.+++++|+|+++++...      .+.|..++  +++... +... ......++|+|+++.+ 
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~-~~~~~~i~~s~dg~~l-  193 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFAD-ISIPNSICFSPDGTTG-  193 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEE-ESSEEEEEECTTSCEE-
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCC-CcccCCeEEcCCCCEE-
Confidence            764322111   1 236889999999987665542      24555555  454432 2221 2346789999999863 


Q ss_pred             EEEEEecCCcceEEEEECC--CC-cE-----EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc
Q 019482          214 LFCTVQRGDKALLAVYDIS--TW-NK-----IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~--~~-~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  285 (340)
                         .++...++.|.+||+.  ++ +.     ...+.........++++++|++.++...++.|.+||. +++.+..+. .
T Consensus       194 ---yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~-~  268 (326)
T 2ghs_A          194 ---YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE-V  268 (326)
T ss_dssp             ---EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE-C
T ss_pred             ---EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE-C
Confidence               2445567899999986  55 31     1111122345678999999988777766788999998 455554443 2


Q ss_pred             ccccceeeEEEe-cCCeEEEEEec
Q 019482          286 HLGTSIALVEFC-PTQRVVLTASK  308 (340)
Q Consensus       286 ~~~~~i~~~~~~-~~~~~l~~~~~  308 (340)
                      + ...+.+++|+ ++++.|+.++.
T Consensus       269 ~-~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          269 P-GKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             S-CSBEEEEEEESTTSCEEEEEEB
T ss_pred             C-CCCcEEEEEecCCCCEEEEEec
Confidence            2 3468999998 88776654443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.64  E-value=9.5e-15  Score=121.86  Aligned_cols=177  Identities=10%  Similarity=0.003  Sum_probs=133.1

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeee-----eccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDIN-----LLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      .++.+++++...++++|+.++ +.+|+++..+....     +..  .....+.. |+.++|  |+++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~--~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF--KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC--SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc--eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence            689999999999999999987 88899865441000     000  00112445 999999  88999998 88999999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      |+.+.........+...+.++.+.+.  .+++++.||.|.+||+.+++... +    ...|++++|+|+|.       +.
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~----~~~Vs~v~WSpkG~-------~v  177 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L----AQNVTSFDVTNSQL-------AV  177 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E----EESEEEEEECSSEE-------EE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c----cCCceEEEEcCCce-------EE
Confidence            99876655555555667888777654  38888999999999999877643 2    23699999999992       45


Q ss_pred             cCCcceEEEEECCCCcE--Eeee------e---ccCCCeeEEEECCCCCEEEEe
Q 019482          220 RGDKALLAVYDISTWNK--IGHK------R---LLRKPASVLSISLDGKYLAMG  262 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~--~~~~------~---~~~~~i~~~~~s~~~~~l~~~  262 (340)
                      +..|+.+++|+......  ...+      .   .+...|.++.|.+++.++++-
T Consensus       178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            66789999999887764  4444      2   256789999999999988873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=4.7e-13  Score=110.14  Aligned_cols=202  Identities=10%  Similarity=0.079  Sum_probs=134.5

Q ss_pred             CCCCeeEEEEcCC-CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-------
Q 019482           62 SEGDPMTIAVNPS-GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------  133 (340)
Q Consensus        62 h~~~v~~~~~~~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  133 (340)
                      +...+.+++++++ |+++++...+ .|.+||.+ ++.........  .......+.+++++++|+++++...+       
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDS--EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY  144 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCT--TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred             CCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccC--CCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence            4467999999999 7655554434 58999987 54322101100  00122457899999999877776554       


Q ss_pred             --------CcEEEEeCCCCceeeccccCccceeEEEec----CCCCeEEEe-eCCCeEEEEEcc-CCee-----EEEeec
Q 019482          134 --------GHLRIMHWPSLRIILDEPKAHKSVLDMDFS----LDSEFLATT-STDGSARIWKTE-DGVA-----WTFLTR  194 (340)
Q Consensus       134 --------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~v~iwd~~-~~~~-----~~~~~~  194 (340)
                              +.|..|+.. ++.. .+.........++|+    |+++.++.+ ..++.|.+||.+ +++.     ...+. 
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-  221 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-  221 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-
T ss_pred             cccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-
Confidence                    567777765 4432 222233356789999    999765544 567899999986 4442     12222 


Q ss_pred             CCC-CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEe
Q 019482          195 NSD-EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVD  272 (340)
Q Consensus       195 ~~~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d  272 (340)
                      ... ..+..++++++|..     .++...++.|.+||.++++.+..+..+...+.+++++|+|+.|+++ ..++.|..|+
T Consensus       222 ~~~~~~p~~i~~d~~G~l-----~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          222 GTHEGGADGMDFDEDNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCCceEECCCCCE-----EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            111 45788999999974     3444457889999998777666666666788999999999955554 4567899999


Q ss_pred             ccC
Q 019482          273 VKK  275 (340)
Q Consensus       273 ~~~  275 (340)
                      +..
T Consensus       297 ~~~  299 (314)
T 1pjx_A          297 WQR  299 (314)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.62  E-value=3e-14  Score=129.93  Aligned_cols=240  Identities=9%  Similarity=0.009  Sum_probs=154.7

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEe-----cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-
Q 019482           61 ESEGDPMTIAVNPSGDDFVCST-----TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-  134 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-  134 (340)
                      +|...+..++|||||++||.+.     ....|++||+.+++........        .....++|+ |++.|+.++.+. 
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--------~k~~~~~Ws-Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--------VKFSGISWL-GNEGFFYSSYDKP  196 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--------EESCCCEEE-TTTEEEEEESSCC
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--------ceeccEEEe-CCCEEEEEEecCc
Confidence            3555688999999999988543     2247999999988754322110        112467899 999888887764 


Q ss_pred             ------------cEEEEeCCCCce----eecccc-CccceeEEEecCCCCeEEEeeC----CCeEEEEEccCCe-eEEEe
Q 019482          135 ------------HLRIMHWPSLRI----ILDEPK-AHKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGV-AWTFL  192 (340)
Q Consensus       135 ------------~i~~~d~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~-~~~~~  192 (340)
                                  .|++|++.+...    +..... +......+.|+|||++|+....    +..|+++|+.++. ....+
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                        399999887542    222222 2334678999999998765432    3589999997763 34444


Q ss_pred             ecCCCCceeeEEEccCCCcceEEEEEec--CCcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCC--
Q 019482          193 TRNSDEKIELCRFSKDGTKPFLFCTVQR--GDKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG--  266 (340)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--  266 (340)
                      ..... ..... +++++..+++   .+.  .....|..+|+.++..  ...+..+...+.  .|++++++|+....++  
T Consensus       277 ~~~~~-~~~~~-~~~~g~~l~~---~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~  349 (693)
T 3iuj_A          277 QGDLD-ADVSL-VDNKGSTLYL---LTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDAT  349 (693)
T ss_dssp             ECSSS-SCEEE-EEEETTEEEE---EECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTE
T ss_pred             eCCCC-ceEEE-EeccCCEEEE---EECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCe
Confidence            43332 33333 6777776432   222  2247899999987654  234444554444  8999998888776544  


Q ss_pred             -cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC----CcEEEEEec
Q 019482          267 -DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE----WGAMITKLT  318 (340)
Q Consensus       267 -~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iw~~~  318 (340)
                       .|++||+..+.... +.... ...+..+.+++++..|+....+    +.++.|++.
T Consensus       350 ~~l~~~d~~g~~~~~-l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~  404 (693)
T 3iuj_A          350 ARVEQFDYEGKRVRE-VALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK  404 (693)
T ss_dssp             EEEEEECTTSCEEEE-ECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             eEEEEEECCCCeeEE-eecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence             68999988654433 32222 3467778888888766655444    667777764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.62  E-value=4.8e-13  Score=109.69  Aligned_cols=229  Identities=10%  Similarity=-0.031  Sum_probs=148.4

Q ss_pred             EecCCCCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEE
Q 019482           59 FDESEGDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLR  137 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  137 (340)
                      +..+........|+|+|+ .+++...++.|..|+.. ++. ..+..       ....+..++++++|+++++...++.|.
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~-------~~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLD-------ATAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEE-------SCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeC-------CCCccceeeECCCCCEEEEECCCCEEE
Confidence            444556678999999998 55666677889999874 332 22211       335688999999998777666667899


Q ss_pred             EEeCCCCceeeccccC----ccceeEEEecCCCCeEEE----eeC-------------CCeEEEEEccCCeeEEEeecCC
Q 019482          138 IMHWPSLRIILDEPKA----HKSVLDMDFSLDSEFLAT----TST-------------DGSARIWKTEDGVAWTFLTRNS  196 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~----~~~-------------d~~v~iwd~~~~~~~~~~~~~~  196 (340)
                      .|+.. ++........    ...+..++++|+|+++++    |..             .+.|..+|..+++.....  ..
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~  187 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL  187 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence            99975 4432211111    124678999999998886    332             256777887666554332  22


Q ss_pred             CCceeeEEEccCCCcceEEEEEecCC-----cceEEEEECCCCcEE--eee-eccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482          197 DEKIELCRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNKI--GHK-RLLRKPASVLSISLDGKYLAMGSKDGDI  268 (340)
Q Consensus       197 ~~~v~~~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i  268 (340)
                       .....++|+|+++.++    ++...     .+.|.+||+......  ..+ .........++++++|++.+ ++.+ .|
T Consensus       188 -~~p~gl~~spdg~~ly----v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv  260 (305)
T 3dr2_A          188 -DHPNGLAFSPDEQTLY----VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GV  260 (305)
T ss_dssp             -SSEEEEEECTTSSEEE----EEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EE
T ss_pred             -CCCcceEEcCCCCEEE----EEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cE
Confidence             3467899999998632    22222     378999998765411  111 11233456789999999544 4444 49


Q ss_pred             EEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          269 CVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      .+|+.. ++.+..+.. .  ..+..++|+|+++.|..++.++
T Consensus       261 ~~~~~~-g~~~~~~~~-~--~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          261 CVFDSD-GQLLGHIPT-P--GTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEECTT-SCEEEEEEC-S--SCCCEEEECTTSCEEEEEETTE
T ss_pred             EEECCC-CCEEEEEEC-C--CceeEEEEeCCCCEEEEEcCCe
Confidence            999984 555444432 2  2588999999998887777663

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.61  E-value=3.3e-14  Score=118.62  Aligned_cols=175  Identities=15%  Similarity=0.068  Sum_probs=130.3

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc----------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEE
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR----------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWK  182 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd  182 (340)
                      .++..+++++...++++|+.++ +.+|++....          .......... |+.++|  |+++|+++ .++.|++||
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            3688999999999999999875 6669875433          1111223445 999999  89999998 789999999


Q ss_pred             ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe
Q 019482          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG  262 (340)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  262 (340)
                      +++......... +...+.++.+.+..       ++....||.|.+||+.++....    +...|++++|||+|  ++.|
T Consensus       113 v~sl~~~~~~~~-~~~~v~~i~~~~p~-------~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          113 LEELSEFRTVTS-FEKPVFQLKNVNNT-------LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             SSSTTCEEEEEE-CSSCEEEEEECSSE-------EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE
T ss_pred             chhhhccCccce-eecceeeEEecCCC-------EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE
Confidence            987665444433 33457777766542       4666789999999999887643    34589999999999  6788


Q ss_pred             eCCCcEEEEeccCceE--eeccc-----c---cccccceeeEEEecCCeEEEEEe
Q 019482          263 SKDGDICVVDVKKMEI--NHWSK-----R---LHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       263 ~~dg~i~i~d~~~~~~--~~~~~-----~---~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      ..||.+++|+...++.  ...+.     .   .| ...|.++.|.+++.++++-+
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEEc
Confidence            9999999999888774  33331     1   23 46899999999999888743

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=1.3e-12  Score=108.94  Aligned_cols=246  Identities=9%  Similarity=-0.006  Sum_probs=155.4

Q ss_pred             CCeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-----CCcE
Q 019482           64 GDPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-----DGHL  136 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i  136 (340)
                      ..+..++++|+|+.+++...  ++.++||.+.+++. ..+.........+...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            67899999999998888642  34366777654432 2121110111134568999999999876665433     5789


Q ss_pred             EEEeCCCCceeeccccC------ccceeEEEecCCCCe-EEEee---CCCeEEEEEccCCeeEEEeecCC----------
Q 019482          137 RIMHWPSLRIILDEPKA------HKSVLDMDFSLDSEF-LATTS---TDGSARIWKTEDGVAWTFLTRNS----------  196 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~-l~~~~---~d~~v~iwd~~~~~~~~~~~~~~----------  196 (340)
                      .+||+.+++.+..+...      ...+..++++|++.. +++-.   .++.|.+||+.+++....+..+.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999988755443221      124688999986544 45544   57899999998877655442210          


Q ss_pred             ------------------CCceeeEEEccCCCcceEEEEEecCCcceEEEEECC---CCc-----EEe--eeeccCCCee
Q 019482          197 ------------------DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS---TWN-----KIG--HKRLLRKPAS  248 (340)
Q Consensus       197 ------------------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~---~~~-----~~~--~~~~~~~~i~  248 (340)
                                        ...+..++|+|+++.++    ++......+..++..   .+.     ...  ....+.....
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd  251 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLY----LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD  251 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEE----EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEE----EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence                              01257799999998632    222333456555532   111     000  1112233556


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEE
Q 019482          249 VLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       249 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  315 (340)
                      .++++++|+++++...++.|.+||..+++......... .....+++|.++++++++.+..+.+.+|
T Consensus       252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~-~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK-LSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG-GSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc-eecCCeeEECCCCcEEEEeCcccccccc
Confidence            79999999999998889999999985565433322111 3468899999999988887766555433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.57  E-value=5.1e-12  Score=103.14  Aligned_cols=228  Identities=10%  Similarity=0.005  Sum_probs=142.2

Q ss_pred             EeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEE
Q 019482            9 CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCK   88 (340)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~   88 (340)
                      +..|+++..  .++++..      ..+.|..|+.+  +...       ..+ .....+.+++++|+|+++++ .. ..|.
T Consensus        17 gp~w~~~~~--~l~~~d~------~~~~i~~~d~~--~~~~-------~~~-~~~~~~~~i~~~~dG~l~v~-~~-~~l~   76 (297)
T 3g4e_A           17 SPVWEEVSN--SLLFVDI------PAKKVCRWDSF--TKQV-------QRV-TMDAPVSSVALRQSGGYVAT-IG-TKFC   76 (297)
T ss_dssp             EEEEETTTT--EEEEEET------TTTEEEEEETT--TCCE-------EEE-ECSSCEEEEEEBTTSSEEEE-ET-TEEE
T ss_pred             CCeEECCCC--EEEEEEC------CCCEEEEEECC--CCcE-------EEE-eCCCceEEEEECCCCCEEEE-EC-CeEE
Confidence            567887433  4555333      23446555543  2211       111 23567999999999995554 44 4599


Q ss_pred             EEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---------CCcEEEEeCCCCceeeccccCccceeE
Q 019482           89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLRIMHWPSLRIILDEPKAHKSVLD  159 (340)
Q Consensus        89 iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~~d~~~~~~~~~~~~~~~~i~~  159 (340)
                      +||.++++.........   ......+.+++++|+|+++++...         ...-.+|.+..................
T Consensus        77 ~~d~~~g~~~~~~~~~~---~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~png  153 (297)
T 3g4e_A           77 ALNWKEQSAVVLATVDN---DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNG  153 (297)
T ss_dssp             EEETTTTEEEEEEECCT---TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEE
T ss_pred             EEECCCCcEEEEEecCC---CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccc
Confidence            99988766432221110   012245789999999986665422         123345544432222223333345678


Q ss_pred             EEecCCCCeEE-EeeCCCeEEEEEc--cCCeeE--EEee--cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC
Q 019482          160 MDFSLDSEFLA-TTSTDGSARIWKT--EDGVAW--TFLT--RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS  232 (340)
Q Consensus       160 ~~~~~~~~~l~-~~~~d~~v~iwd~--~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  232 (340)
                      ++|+|+++.|+ +.+.++.|.+|++  .++...  ..+.  ......+..++++++|..     .++....+.|..||..
T Consensus       154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~l-----wva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKL-----WVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCE-----EEEEETTTEEEEECTT
T ss_pred             eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCE-----EEEEcCCCEEEEEcCC
Confidence            99999998664 4556789999997  445431  1121  112245788999999974     3444456789999999


Q ss_pred             CCcEEeeeeccCCCeeEEEEC-CCCCEEEEeeC
Q 019482          233 TWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSK  264 (340)
Q Consensus       233 ~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~  264 (340)
                      +++.+..+..+...+++++|. |+++.|++++.
T Consensus       229 tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          229 TGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            999888888777789999998 88887776654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.57  E-value=9.7e-12  Score=105.96  Aligned_cols=238  Identities=11%  Similarity=-0.005  Sum_probs=150.8

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG   85 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~   85 (340)
                      ....++|.+   +..++++..      .++.|+.|+.+        .......... ..... ++|+|+++.|+++..++
T Consensus       132 ~P~~la~d~---~g~lyv~d~------~~~~I~~id~~--------~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          132 YMWGIAAVG---NNTVLAYQR------DDPRVRLISVD--------DNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEG  192 (409)
T ss_dssp             CEEEEEECS---TTEEEEEET------TTTEEEEEETT--------TTEEEEEEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred             CceEEEEeC---CCCEEEEec------CCCcEEEEECC--------CCEEEEeecc-CCCCc-eeEecCCCcEEEEecCC
Confidence            456788886   334555333      23457666654        2222222333 23344 99999999998888766


Q ss_pred             --CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeec----cccCccce-e
Q 019482           86 --GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD----EPKAHKSV-L  158 (340)
Q Consensus        86 --~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~----~~~~~~~i-~  158 (340)
                        .|.+++.........+ ....  ......+.+++++|++..|+.+..++.|+.||..++.....    ..+....- .
T Consensus       193 ~~~I~~~d~~~~~~~~~~-g~~~--~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~  269 (409)
T 3hrp_A          193 THTVYVYMKASGWAPTRI-GQLG--STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPG  269 (409)
T ss_dssp             TCEEEEEEGGGTTCEEEE-EECC--TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSC
T ss_pred             CceEEEEEcCCCceeEEe-eecc--chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcc
Confidence              6777777654332222 0000  01235568899999544555567788999999887654322    21221111 3


Q ss_pred             -EEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCC--------------CCceeeEEEccCCCcceEEEEEecC-
Q 019482          159 -DMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNS--------------DEKIELCRFSKDGTKPFLFCTVQRG-  221 (340)
Q Consensus       159 -~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~~~~~-  221 (340)
                       .++|+|+ +.++++-..++.|+.|+....  +..+....              -.....++++|+|..     .++.. 
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l-----yvad~~  342 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-----YIVDGF  342 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE-----EEEETT
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE-----EEEeCC
Confidence             8999995 666666667789999987643  22332221              134788999999984     46666 


Q ss_pred             CcceEEEEECCCCcEEeeeecc---------------CCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482          222 DKALLAVYDISTWNKIGHKRLL---------------RKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                      .++.|+.||+.++... .+..+               -.....++++|+|.++++-..++.|+.+++
T Consensus       343 ~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          343 KGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7899999998777643 33332               135788999999888887778888888775

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.56  E-value=1.5e-11  Score=100.70  Aligned_cols=232  Identities=13%  Similarity=0.058  Sum_probs=146.8

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCC
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGG   86 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~   86 (340)
                      .....|.++..  .++.++.      ..+.|..|+.  .+. .       ..+..+...+..++++++|+++++...++.
T Consensus        47 ~egp~~~~~g~--~l~~~d~------~~~~i~~~~~--~g~-~-------~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~  108 (305)
T 3dr2_A           47 SEGPAWWEAQR--TLVWSDL------VGRRVLGWRE--DGT-V-------DVLLDATAFTNGNAVDAQQRLVHCEHGRRA  108 (305)
T ss_dssp             EEEEEEEGGGT--EEEEEET------TTTEEEEEET--TSC-E-------EEEEESCSCEEEEEECTTSCEEEEETTTTE
T ss_pred             ccCCeEeCCCC--EEEEEEC------CCCEEEEEeC--CCC-E-------EEEeCCCCccceeeECCCCCEEEEECCCCE
Confidence            35678888432  3555443      3344666643  221 1       223445677999999999997666556677


Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE----ccC-------------CCcEEEEeCCCCceeec
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA----GGV-------------DGHLRIMHWPSLRIILD  149 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~~~d~~~~~~~~~  149 (340)
                      |.+|+.+ ++.. .+.... . ......+.++++.|+|++.++    |..             .+.|..+|..+++....
T Consensus       109 v~~~~~~-g~~~-~~~~~~-~-~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~  184 (305)
T 3dr2_A          109 ITRSDAD-GQAH-LLVGRY-A-GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM  184 (305)
T ss_dssp             EEEECTT-SCEE-EEECEE-T-TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred             EEEECCC-CCEE-EEEecc-C-CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence            9999875 3322 111110 0 011245678999999998876    432             25677788766654432


Q ss_pred             cccCccceeEEEecCCCCeEEEeeCC------CeEEEEEccCCee--EEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482          150 EPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      .  .......++|+||++.|+.+...      +.|++|++..+..  ...+.......+..++++++|.      +..+.
T Consensus       185 ~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~------lwv~~  256 (305)
T 3dr2_A          185 A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW------LWSSS  256 (305)
T ss_dssp             E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC------EEECC
T ss_pred             e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC------EEEec
Confidence            2  33456789999999987777654      6899999876541  1112111234467899999998      34444


Q ss_pred             CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEe
Q 019482          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD  272 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d  272 (340)
                      .+ .|.+||. .++.+..+.... .+.+++|+|+++.|++++.++ +..++
T Consensus       257 ~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          257 GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            44 4999998 466666666555 588999999999888887754 44433

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.54  E-value=1e-11  Score=103.27  Aligned_cols=218  Identities=13%  Similarity=0.117  Sum_probs=144.7

Q ss_pred             CeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ....++|+|||++++++..  ++.|.++|+.+.+....+...        + + ...+....+.+++.+.||.+.+.++.
T Consensus       138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~--------g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP--------D-C-YHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC--------S-E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC--------C-c-ceeecCCCceeEEECCCCCEEEEECC
Confidence            5778999999999988864  578999999999877666321        1 1 22232244566677778888888887


Q ss_pred             C-CceeeccccC----cccee-EEEec-CCCCeEEEeeCCCeEEEEEccCCe--eEEEee---------cCCCCceeeEE
Q 019482          143 S-LRIILDEPKA----HKSVL-DMDFS-LDSEFLATTSTDGSARIWKTEDGV--AWTFLT---------RNSDEKIELCR  204 (340)
Q Consensus       143 ~-~~~~~~~~~~----~~~i~-~~~~~-~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~---------~~~~~~v~~~~  204 (340)
                      + ++........    ..++. ...|. ++|++++ .+.+|.|++.|+..+.  .+..+.         .-..+....++
T Consensus       208 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a  286 (386)
T 3sjl_D          208 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA  286 (386)
T ss_dssp             SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred             CCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence            5 4432211111    12222 24664 5776555 5558999999997654  222221         00112345688


Q ss_pred             EccCCCcceEEEEEec-------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC-EEEEee-CCCcEEEEeccC
Q 019482          205 FSKDGTKPFLFCTVQR-------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVKK  275 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~~  275 (340)
                      ++++++.+|..  .-.       ...+.|.++|+.+++.+..+.... .+..+.++||++ +|++.. .++.|.++|..+
T Consensus       287 ~~~~~~~lyV~--~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t  363 (386)
T 3sjl_D          287 YHRALDRIYLL--VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAES  363 (386)
T ss_dssp             EETTTTEEEEE--EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred             ECCCCCeEEEE--eccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence            89999875432  111       124689999999999988776543 678999999997 666654 489999999999


Q ss_pred             ceEeecccccccccceeeEEEecC
Q 019482          276 MEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       276 ~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      ++.+..+...   ..-+.+.+++|
T Consensus       364 ~k~~~~i~~~---~~p~~l~~s~d  384 (386)
T 3sjl_D          364 GEELRSVNQL---GHGPQVITTAD  384 (386)
T ss_dssp             CCEEEEECCC---CSSCCEEEECC
T ss_pred             CcEEEEecCC---CCCceeEECCc
Confidence            9998877543   34567777776

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=5.9e-11  Score=99.73  Aligned_cols=201  Identities=12%  Similarity=0.029  Sum_probs=134.7

Q ss_pred             CeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeee-eccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEEEe
Q 019482           65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDIN-LLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRIMH  140 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~d  140 (340)
                      ....++|+|||++|+++..  ++.|.++| .+++.... +..        .   .++.+.|++ +.+++.+.||.+.++|
T Consensus       126 ~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--------~---~~~~~~~~~~~~~~~~~~dg~~~~vd  193 (373)
T 2mad_H          126 YSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--------P---TCYHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             CccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--------C---ceEEEEeCCCceEEEEcCCCCEEEEE
Confidence            4668999999999998874  47799999 88876544 311        1   124555655 3556667899999999


Q ss_pred             CCCCceeeccc-----cCccc-eeEEEecCCCCeEEEeeCCCeEEEEEccCCe--eEEEeecC---------CCCceeeE
Q 019482          141 WPSLRIILDEP-----KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTFLTRN---------SDEKIELC  203 (340)
Q Consensus       141 ~~~~~~~~~~~-----~~~~~-i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~~~~~---------~~~~v~~~  203 (340)
                      . +++......     ....+ .....+.+++..++..+..+.+.+.|+..+.  .+..+...         .......+
T Consensus       194 ~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~  272 (373)
T 2mad_H          194 H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQV  272 (373)
T ss_pred             C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeE
Confidence            9 776552211     11122 2335567766555555577899999987543  22222110         01123447


Q ss_pred             EEccCCCcceEEEEEecC-------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC-EEEEee-CCCcEEEEecc
Q 019482          204 RFSKDGTKPFLFCTVQRG-------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK-YLAMGS-KDGDICVVDVK  274 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~i~d~~  274 (340)
                      .++|+++.+|..  ....       ..+.|.++|+.+++.+..+... .....+.|+|||+ +++++. .++.|.++|+.
T Consensus       273 ~~s~d~~~lyV~--~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          273 AYLKSSDGIYLL--TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EECCCCCEEEEE--eccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            889998874321  1111       2468999999999988877543 3578999999999 777777 48999999999


Q ss_pred             CceEeec
Q 019482          275 KMEINHW  281 (340)
Q Consensus       275 ~~~~~~~  281 (340)
                      +++.+..
T Consensus       350 t~~vv~~  356 (373)
T 2mad_H          350 AGDQDQS  356 (373)
T ss_pred             CCCEEee
Confidence            9998876

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.51  E-value=3e-12  Score=106.55  Aligned_cols=255  Identities=7%  Similarity=-0.144  Sum_probs=159.6

Q ss_pred             ceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe----------cCCCEEEEEecCceeeeeecccc
Q 019482           36 VLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST----------TNGGCKLFEVYGGATDINLLAKK  105 (340)
Q Consensus        36 ~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~  105 (340)
                      .+.+++.+        +.....++.....+  .+.++||+++++++.          .++.|.+||+.+.+....+....
T Consensus        47 ~vsvID~~--------t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~  116 (368)
T 1mda_H           47 ENWVSCAG--------CGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPD  116 (368)
T ss_dssp             EEEEEETT--------TTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETT
T ss_pred             eEEEEECC--------CCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence            45565544        33444445444445  799999999998886          36789999999998877664320


Q ss_pred             CCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEE--EeCCCCceeeccccCccceeEEEecCCCC-eEEEeeCCCeEEE
Q 019482          106 MPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARI  180 (340)
Q Consensus       106 ~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~--~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~i  180 (340)
                      ...+........++++|||++++++..  +..+.+  +|+.+   +..+.-. +   ++.+.|+++ .+++.+.|+.+.+
T Consensus       117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S---CCCCEEEETTEEECCCCTTSCEE
T ss_pred             ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEE
Confidence            000001123467999999999998864  456888  99876   2222211 1   122345443 3455667888888


Q ss_pred             EEccC-----CeeEEE----eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeecc------
Q 019482          181 WKTED-----GVAWTF----LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLL------  243 (340)
Q Consensus       181 wd~~~-----~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~------  243 (340)
                      .|+++     ++....    +.. ...+.   . ++++..     ++..+. +.+.+.|+....  .+..+...      
T Consensus       190 vd~~~~~~~~~~v~~~~t~~i~v-g~~P~---~-~~~~~~-----~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~  258 (368)
T 1mda_H          190 SDLAAAPAAAGIVGAQCTGAQNC-SSQAA---Q-ANYPGM-----LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA  258 (368)
T ss_dssp             EECCSSCCCCEECCCCSCTTSCB-CSCCE---E-ETTTTE-----EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred             EECccccccCCeEEEEeeeeeeC-CCCcc---c-cccCCE-----EEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence            88876     433211    111 11222   3 555554     233334 889999987543  22211110      


Q ss_pred             ----CCCeeEEEECCCCCEEEEeeC-C--------CcEEEEeccCceEeecccccccccceeeEEEecCCe-EEEEEe-c
Q 019482          244 ----RKPASVLSISLDGKYLAMGSK-D--------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTAS-K  308 (340)
Q Consensus       244 ----~~~i~~~~~s~~~~~l~~~~~-d--------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~  308 (340)
                          ......+.++|+++.++++.. +        +.+.++|+.+.+.+..+..+   .....++|+|||+ .+++.. .
T Consensus       259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~  335 (368)
T 1mda_H          259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAG  335 (368)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETT
T ss_pred             cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCC
Confidence                011222689999998887643 2        35679999999998877543   3689999999997 566666 5


Q ss_pred             CCcEEEEEecCCC
Q 019482          309 EWGAMITKLTVPA  321 (340)
Q Consensus       309 dg~i~iw~~~~~~  321 (340)
                      ++.|.++|+...+
T Consensus       336 ~~~VsVID~~t~k  348 (368)
T 1mda_H          336 TEVLDIYDAASDQ  348 (368)
T ss_dssp             TTEEEEEESSSCE
T ss_pred             CCeEEEEECCCCc
Confidence            8999999996544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.47  E-value=1.5e-10  Score=95.67  Aligned_cols=188  Identities=12%  Similarity=0.012  Sum_probs=122.3

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC------CCcE
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------DGHL  136 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i  136 (340)
                      ...+.+++|+|+|+++++. .++ |.+||..+++... +....  .......+.+++++|+|+++++...      .+.|
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~-~~~~~--~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l  163 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTL-HAELE--SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  163 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEE-EECSS--TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEE-EeeCC--CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence            4579999999999877654 455 9999987766432 21110  0011246889999999987665432      2455


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-eCCCeEEEEEcc--CC-ee-----EEEeecCCCCceeeEEEcc
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTE--DG-VA-----WTFLTRNSDEKIELCRFSK  207 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~  207 (340)
                      ..++  +++.. .+.........++|+|+++.++.+ +.++.|.+||+.  ++ +.     ...+. .....+..+++++
T Consensus       164 ~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~  239 (326)
T 2ghs_A          164 YHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDA  239 (326)
T ss_dssp             EEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECT
T ss_pred             EEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECC
Confidence            5555  44432 222223356789999999876554 457899999986  55 31     11221 1234577899999


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEEC-CCCCEEEEeeCC
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGSKD  265 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~d  265 (340)
                      +|..     .++...++.|..||. +++.+..+......+++++|+ |+++.|++++..
T Consensus       240 ~G~l-----wva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          240 EGHI-----WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             TSCE-----EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCE-----EEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            9974     333334578999998 567666676666679999998 888877665543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.46  E-value=1.4e-11  Score=112.47  Aligned_cols=251  Identities=11%  Similarity=0.061  Sum_probs=149.6

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      ..+..++|+|   ++..+|++...+ +.....|++++++..  ..     ....+.+.  ....++|+ ||+.|+.++.+
T Consensus       129 ~~l~~~~~Sp---Dg~~lAy~~~~~-G~~~~~i~v~dl~tg--~~-----~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~  194 (693)
T 3iuj_A          129 TALDQLSFSR---DGRILAYSLSLA-GSDWREIHLMDVESK--QP-----LETPLKDV--KFSGISWL-GNEGFFYSSYD  194 (693)
T ss_dssp             CEEEEEEECT---TSSEEEEEEECS-SCCEEEEEEEETTTC--SE-----EEEEEEEE--ESCCCEEE-TTTEEEEEESS
T ss_pred             EEEEEEEECC---CCCEEEEEEecC-CCceEEEEEEECCCC--CC-----CccccCCc--eeccEEEe-CCCEEEEEEec
Confidence            4677889999   445666544321 122355777776522  11     11112211  13568899 99999988877


Q ss_pred             CC-------------EEEEEecCceeeeeeccccCCCCC-CCCCeEEEEEecCCCeEEEcc----CCCcEEEEeCCCCc-
Q 019482           85 GG-------------CKLFEVYGGATDINLLAKKMPPLQ-DAGPQKCLSFSVDGSRFAAGG----VDGHLRIMHWPSLR-  145 (340)
Q Consensus        85 ~~-------------i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~-  145 (340)
                      ..             |++|++.+...........   .. +......+.|+|||++|+...    .+..|+++|+.++. 
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~---~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~  271 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA---IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA  271 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESC---SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEec---CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence            43             8899987654322222111   01 233467899999999886543    23589999997763 


Q ss_pred             eeeccccCccceeEEEecCCCCeEE-EeeCC---CeEEEEEccCCee--EEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          146 IILDEPKAHKSVLDMDFSLDSEFLA-TTSTD---GSARIWKTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d---~~v~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      ....+..+....... |++++..|+ .+..+   +.|..+|+.++..  ...+..+... +.  .|+++++.+++  ...
T Consensus       272 ~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~--~~~  345 (693)
T 3iuj_A          272 PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VL--TVHSGSGYLFA--EYM  345 (693)
T ss_dssp             CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-CE--EEEEETTEEEE--EEE
T ss_pred             ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-EE--EEEEECCEEEE--EEE
Confidence            333444444444444 666666554 44433   6799999987654  3445444433 33  89999987321  112


Q ss_pred             cCCcceEEEEECCCCcEEeeeec-cCCCeeEEEECCCCCEEEEeeCC----CcEEEEeccCceEe
Q 019482          220 RGDKALLAVYDISTWNKIGHKRL-LRKPASVLSISLDGKYLAMGSKD----GDICVVDVKKMEIN  279 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~  279 (340)
                      ......|++||+..+. ...+.. ....+..+.++|+++.++....+    +.++.||+.+++..
T Consensus       346 ~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          346 VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            2223479999988543 334332 33456777888888877766544    78999999877643

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.46  E-value=9.2e-11  Score=106.50  Aligned_cols=221  Identities=10%  Similarity=0.072  Sum_probs=144.3

Q ss_pred             CCCEEEEEecCceeeeeeccccCCCC------------------------CCCCCeEEEEEecCCCeEEEccCCCc----
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPL------------------------QDAGPQKCLSFSVDGSRFAAGGVDGH----  135 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~----  135 (340)
                      ++.|+.||..+++....+......+.                        .+......++++|+..+++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            68899999999987766542110000                        01111235788998888888887763    


Q ss_pred             ---------------EEEEeCCCCceeeccccCcc---------ceeEEEecCCCC---eEEEeeCCCeEEEEEccCCee
Q 019482          136 ---------------LRIMHWPSLRIILDEPKAHK---------SVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       136 ---------------i~~~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~  188 (340)
                                     |..+|.++++.+..+...+.         +........+|+   .++.++.+|.++++|.++|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           99999999998876654211         122222223565   788999999999999999998


Q ss_pred             EEEeecCCCC--------------------------------------ceeeEEEccCCCcceEEEEE------------
Q 019482          189 WTFLTRNSDE--------------------------------------KIELCRFSKDGTKPFLFCTV------------  218 (340)
Q Consensus       189 ~~~~~~~~~~--------------------------------------~v~~~~~~~~~~~~~~~~~~------------  218 (340)
                      +.........                                      .-..++++|+...+++...-            
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            7443211100                                      01136788887754321100            


Q ss_pred             ----------ec------------------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482          219 ----------QR------------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV  270 (340)
Q Consensus       219 ----------~~------------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  270 (340)
                                .+                  ..++.|..||+.+++.+-....+. +...-.+...+.++++++.||.++.
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEE
Confidence                      00                  014889999999999876665543 3333356667889999999999999


Q ss_pred             EeccCceEeecccccccccceeeEEEecCCeE-EEEE
Q 019482          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTA  306 (340)
Q Consensus       271 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~  306 (340)
                      ||.++++.+..+...+ .....-+.|..+|+. +++.
T Consensus       501 ~D~~tG~~lw~~~~~~-~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          501 YAADTGEKLWEQPAAS-GVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             EETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCCccceeeeCCC-CcccCceEEEECCEEEEEEE
Confidence            9999999987765433 333455778888864 4444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.43  E-value=1.2e-13  Score=116.18  Aligned_cols=203  Identities=13%  Similarity=0.025  Sum_probs=114.5

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      ++..+++++.|+.|+.||..+++.......         +.+.+..+..++..+++++.||.|+.||.++++.+.....+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE---------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC---------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC---------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            577899999999999999999988776643         22333334567778888889999999999888876555433


Q ss_pred             cc-cee-EEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEEC
Q 019482          154 HK-SVL-DMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI  231 (340)
Q Consensus       154 ~~-~i~-~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  231 (340)
                      .. .+. ...+. ++..+++++.|+.++.||.++|+.+..+..+.     ...++|++..     ++.++.++.|+.||.
T Consensus        79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~-----v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSL-----LYLGRTEYTITMYDT  147 (369)
T ss_dssp             HHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCS
T ss_pred             CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCE-----EEEEecCCEEEEEEC
Confidence            22 111 11111 34567788889999999999999877665332     2345666665     566778899999999


Q ss_pred             CCCcEEeeeeccCCCeeEEEECCCC---CEEEEeeCCCcEEEEeccCceEeecccccccccceee-EEEecCCe
Q 019482          232 STWNKIGHKRLLRKPASVLSISLDG---KYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQR  301 (340)
Q Consensus       232 ~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~  301 (340)
                      ++++.+..+....  .....++++.   ..+++++.||.|+.||..+++.+.....   ..++.. ..++++|.
T Consensus       148 ~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          148 KTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY---ASPVVAFYVWQREGL  216 (369)
T ss_dssp             SSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC---SSCEEEEEECTTSSC
T ss_pred             CCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC---CCceEEEEEecCCce
Confidence            9998765543221  1223344432   5677788999999999999987655432   234433 34455664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=8e-11  Score=98.10  Aligned_cols=249  Identities=8%  Similarity=-0.083  Sum_probs=148.1

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec--
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT--   83 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--   83 (340)
                      .+..+++++   ++++++.....    .++.+++|.++ .+ .+..-+.......+|...+..++++++|+++++-..  
T Consensus        18 ~p~~va~~~---~g~~~v~~~~~----~~~~~~l~~~~-~g-~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~   88 (343)
T 2qe8_A           18 APGNITLTP---DGRLFLSLHQF----YQPEMQVAELT-QD-GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ   88 (343)
T ss_dssp             CEEEEEECT---TSCEEEEECGG----GCCSCSEEEEE-TT-EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred             CcceEEECC---CCCEEEEeCCC----CCCceEEEEEC-CC-CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence            456777777   34555543211    11226777776 22 121111111112346678999999999886665443  


Q ss_pred             ---CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEcc---CCCcEEEEeCCCCceeeccccC---
Q 019482           84 ---NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGG---VDGHLRIMHWPSLRIILDEPKA---  153 (340)
Q Consensus        84 ---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~~~d~~~~~~~~~~~~~---  153 (340)
                         ++.|.+||+.+++....+.... ....+...+..+++++++..+ ++-.   .++.|.+||+.+++....+..|   
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~~-~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~  167 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLPP-PITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI  167 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECCT-TTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred             cCCCCeEEEEECCCCeEEEEEECCh-hhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence               5679999998887554442211 111233456899999865444 4444   5788999999877654433211   


Q ss_pred             --------------------------ccceeEEEecCCCCeEEEeeCCC-eEEEEEcc---CCe-----e---EEEeecC
Q 019482          154 --------------------------HKSVLDMDFSLDSEFLATTSTDG-SARIWKTE---DGV-----A---WTFLTRN  195 (340)
Q Consensus       154 --------------------------~~~i~~~~~~~~~~~l~~~~~d~-~v~iwd~~---~~~-----~---~~~~~~~  195 (340)
                                                ...+..++|+|+++.|+.+..++ .+..++..   .+.     .   +..+ . 
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g-  245 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY-S-  245 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-E-
T ss_pred             cccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-c-
Confidence                                      01357899999999888877665 45555432   110     0   0111 1 


Q ss_pred             CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEeeCCCcEEEE
Q 019482          196 SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVV  271 (340)
Q Consensus       196 ~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~  271 (340)
                      .......++++++|..     .++...++.|.+||..+++........ ......+++.++++++++.+..+.+.+|
T Consensus       246 ~~g~pdgia~d~~G~l-----~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          246 EKPICDGISIDKDHNI-----YVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             ECCSCSCEEECTTCCE-----EEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             cCCCCceEEECCCCCE-----EEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            1234678999999874     466667889999999556543222222 3457899999998888777655444333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.42  E-value=2.2e-10  Score=103.83  Aligned_cols=242  Identities=10%  Similarity=0.060  Sum_probs=159.5

Q ss_pred             CCeEEEEec------CCCEEEEEecCceeeeeeccccCCC---C----------------------CCCCCeEEEEEecC
Q 019482           75 GDDFVCSTT------NGGCKLFEVYGGATDINLLAKKMPP---L----------------------QDAGPQKCLSFSVD  123 (340)
Q Consensus        75 ~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~---~----------------------~~~~~v~~~~~~~~  123 (340)
                      +..+++++.      ++.|+.+|..+++............   .                      ........++++|+
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            345555543      6889999999998776664322110   0                      01112235788998


Q ss_pred             CCeEEEccCCC-------------------cEEEEeCCCCceeeccccCc---------cceeEEEecCCC---CeEEEe
Q 019482          124 GSRFAAGGVDG-------------------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDS---EFLATT  172 (340)
Q Consensus       124 ~~~l~~~~~dg-------------------~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~---~~l~~~  172 (340)
                      +..++.+..++                   .|..+|.++++....+....         ....-+....+|   ..++.+
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~  333 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA  333 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence            88888877654                   49999999999887654321         112223334467   679999


Q ss_pred             eCCCeEEEEEccCCeeEEEeecCCCC----------ce------------------------eeEEEccCCCcceEEEEE
Q 019482          173 STDGSARIWKTEDGVAWTFLTRNSDE----------KI------------------------ELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       173 ~~d~~v~iwd~~~~~~~~~~~~~~~~----------~v------------------------~~~~~~~~~~~~~~~~~~  218 (340)
                      +.+|.++++|.++|+.+..+......          ++                        ..++++|++..+++...-
T Consensus       334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~  413 (677)
T 1kb0_A          334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN  413 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence            99999999999999988766422100          00                        156888887764332110


Q ss_pred             e------------c--------------------------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEE
Q 019482          219 Q------------R--------------------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (340)
Q Consensus       219 ~------------~--------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  260 (340)
                      .            +                          ...+.|..||+.+++.+-.... ..+.....+..++..++
T Consensus       414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~  492 (677)
T 1kb0_A          414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVF  492 (677)
T ss_dssp             CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEE
T ss_pred             cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEE
Confidence            0            0                          0238899999999998766653 33444555667888999


Q ss_pred             EeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE-EEec----------------CCcEEEEEec
Q 019482          261 MGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL-TASK----------------EWGAMITKLT  318 (340)
Q Consensus       261 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~----------------dg~i~iw~~~  318 (340)
                      +++.||.+++||.++++.+..+...+ .....-+.+..+|+.++ ..+.                .+.+.++.+.
T Consensus       493 ~g~~dg~l~a~D~~tG~~lw~~~~~~-~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~  566 (677)
T 1kb0_A          493 QGTADGRLVAYHAATGEKLWEAPTGT-GVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG  566 (677)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred             EECCCCcEEEEECCCCceeeeeeCCC-CcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence            99999999999999999988775444 33445667778886444 3222                3677888876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=4.7e-11  Score=101.04  Aligned_cols=231  Identities=10%  Similarity=-0.062  Sum_probs=151.3

Q ss_pred             CCCCeEEEEecC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc----------CCCcEE
Q 019482           73 PSGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG----------VDGHLR  137 (340)
Q Consensus        73 ~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~  137 (340)
                      ++++.+++....     +.|.++|..+.+....+...       ..+  .+.++||+++++++.          .++.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-------FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-------CCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence            467766666542     58999999999887776542       134  799999999888876          367899


Q ss_pred             EEeCCCCceeeccccC-------ccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482          138 IMHWPSLRIILDEPKA-------HKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (340)
                      ++|..+++.+..+.-.       ......+.++|||++++++..  ++.|.+.|+.+++.+..+....     +....|+
T Consensus       153 viD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~  227 (426)
T 3c75_H          153 VFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPA  227 (426)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----EEEEEEE
T ss_pred             EEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----ceeeccC
Confidence            9999998877665321       123567899999999998874  5789999999999988876322     1334555


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEee----eeccCCCe-eEEEECCCCCEEEEeeCCCcEEEEeccCceEee--c
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGH----KRLLRKPA-SVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--W  281 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~i-~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~  281 (340)
                      +...    +++.+.|+.+.+.+..+++....    +.....++ ..+.++++++.++..+..+.+.+.|........  .
T Consensus       228 g~~~----~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~  303 (426)
T 3c75_H          228 SPTV----FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP  303 (426)
T ss_dssp             ETTE----EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred             CCcE----EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence            5442    23334567777777755544321    11111221 235679998888887888999999986644221  1


Q ss_pred             cc--------ccccccceeeEEEecCCeEEEEEec----------CCcEEEEEecCCC
Q 019482          282 SK--------RLHLGTSIALVEFCPTQRVVLTASK----------EWGAMITKLTVPA  321 (340)
Q Consensus       282 ~~--------~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~  321 (340)
                      ..        ..........++++||++.++....          ++.|.+.|....+
T Consensus       304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            10        0000112334789999876666532          3467777765443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.42  E-value=9.5e-10  Score=92.25  Aligned_cols=218  Identities=15%  Similarity=0.129  Sum_probs=141.0

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEe-------cCCCCeeEEEEcCCCCeEEEEecC------CCEEEEEecCceeee
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFD-------ESEGDPMTIAVNPSGDDFVCSTTN------GGCKLFEVYGGATDI   99 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~~~~~d------~~i~iw~~~~~~~~~   99 (340)
                      .++.|.++++..+..    .+....+++       ........+...|+| .++++..+      +.|.++|..+.+...
T Consensus       104 ~s~~I~viD~~t~p~----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~  178 (462)
T 2ece_A          104 RSSRIYIIDTKPNPR----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG  178 (462)
T ss_dssp             TTCCEEEEECCSCTT----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred             CCCeEEEEECCCCCC----CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence            345688888753332    233333331       112246678889999 66666555      679999999888776


Q ss_pred             eeccccCCCCCCCCCeEEEEEecCCCeEEEcc-------------------CCCcEEEEeCCCCceeeccccC-c-ccee
Q 019482          100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-------------------VDGHLRIMHWPSLRIILDEPKA-H-KSVL  158 (340)
Q Consensus       100 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~dg~i~~~d~~~~~~~~~~~~~-~-~~i~  158 (340)
                      .......    ....-+.+.|+|+++.+++..                   .+.+|.+||+.+++.+..+.-. . ....
T Consensus       179 ~~~~~~~----~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~  254 (462)
T 2ece_A          179 KWEIDRG----DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL  254 (462)
T ss_dssp             ECCSBCT----TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE
T ss_pred             EEccCCC----CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc
Confidence            6643211    112345688999999888874                   3688999999988766655443 1 2345


Q ss_pred             EEEe--cCCCCeEEEee------CCCeEEEEEccCCeeE--EEe--ecC---------------CCCceeeEEEccCCCc
Q 019482          159 DMDF--SLDSEFLATTS------TDGSARIWKTEDGVAW--TFL--TRN---------------SDEKIELCRFSKDGTK  211 (340)
Q Consensus       159 ~~~~--~~~~~~l~~~~------~d~~v~iwd~~~~~~~--~~~--~~~---------------~~~~v~~~~~~~~~~~  211 (340)
                      .+.|  +|+++++.+++      .+++|.+|..+.++..  +.+  ...               .......+.+++|+++
T Consensus       255 ~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrf  334 (462)
T 2ece_A          255 ELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKF  334 (462)
T ss_dssp             EEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCE
T ss_pred             eeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCE
Confidence            5655  99999877666      4668887776554211  111  100               0234788999999997


Q ss_pred             ceEEEEEecCCcceEEEEECCC---CcEEeeeeccC--------------CCeeEEEECCCCCEEEEee
Q 019482          212 PFLFCTVQRGDKALLAVYDIST---WNKIGHKRLLR--------------KPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~--------------~~i~~~~~s~~~~~l~~~~  263 (340)
                      +    .++.-..+.|.+||+..   .+.+..+....              ..-..+.++|||++|+++.
T Consensus       335 L----YVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          335 L----YLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             E----EEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             E----EEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            4    34555678999999863   23444443321              1257899999999999987

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.39  E-value=7.5e-10  Score=87.28  Aligned_cols=196  Identities=12%  Similarity=0.060  Sum_probs=136.4

Q ss_pred             CeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeeccccCcc-ceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeE
Q 019482          114 PQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~  189 (340)
                      ....+.|++++.+.++.+.  ++.|.++|+.+++.+..+.-... ....+++.  ++.| ++.-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3578999998754444432  57999999999998776542222 22345554  4444 44446889999999999999


Q ss_pred             EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeC
Q 019482          190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSK  264 (340)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~  264 (340)
                      .++... .  .....+++|++.     ++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+....
T Consensus       100 ~~i~~g-~--~~g~glt~Dg~~-----l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A          100 KNFTHQ-M--KDGWGLATDGKI-----LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             EEEECC-S--SSCCEEEECSSS-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEECC-C--CCeEEEEECCCE-----EEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            888644 1  123446778887     3334458899999999988777765432     135678887 6755555556


Q ss_pred             CCcEEEEeccCceEeeccccccc-----------ccceeeEEEecCCe-EEEEEecCCcEEEEEecCC
Q 019482          265 DGDICVVDVKKMEINHWSKRLHL-----------GTSIALVEFCPTQR-VVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       265 dg~i~i~d~~~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~  320 (340)
                      ++.|.+.|..+++.+..+.....           ....+.++|+|+++ +++++...+.+.+-++...
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            78999999999998877653210           13568999999975 5566667788888888654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.39  E-value=9.2e-14  Score=116.92  Aligned_cols=182  Identities=15%  Similarity=0.062  Sum_probs=103.6

Q ss_pred             CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCcee-
Q 019482          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIE-  201 (340)
Q Consensus       123 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~-  201 (340)
                      ++..+++++.||.|+.||..+++.+..+..  ..+.+..+.+++..+++++.|+.|+.||.++++.+..+.......+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567899999999999999999998877765  45555556677878888889999999999988876655422111111 


Q ss_pred             eEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      +..+..++.      +++++.++.++.||.++++.+..+..+.    ...++|++..+++++.|+.|+.||.++++.+..
T Consensus        86 sp~~~~~~~------v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           86 SPCRSSDGI------LYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             CSCC-----------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             CceEecCCE------EEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence            111112333      5667778999999999999876655433    235667888999999999999999999887654


Q ss_pred             ccccccccceeeEEEecCC---eEEEEEecCCcEEEEEecCC
Q 019482          282 SKRLHLGTSIALVEFCPTQ---RVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       282 ~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ....    .....++.++.   ..+++++.||.++.|+....
T Consensus       156 ~~~~----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG  193 (369)
T 2hz6_A          156 ATYF----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG  193 (369)
T ss_dssp             EEEE----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC
T ss_pred             Eecc----cccCccccCCccccceEEEECCCCEEEEEECCCC
Confidence            3211    12233344432   45667788888888887543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.39  E-value=2.7e-10  Score=103.47  Aligned_cols=237  Identities=12%  Similarity=0.090  Sum_probs=155.8

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccc-cCCC-CCC-CCCeEEEEEecCCCeEEEcc------CCCcEEEEeCCCC
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPP-LQD-AGPQKCLSFSVDGSRFAAGG------VDGHLRIMHWPSL  144 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~-~~~-~~~v~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~  144 (340)
                      .+..+++++.|+.|..+|..+++........ .... ... ..++    . .++ .++++.      .+|.|+.||.+++
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~----v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG  193 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPR----V-VNG-KVVIGNGGAEFGVRGYVTAYDAETG  193 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTC
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcE----E-ECC-EEEEEeCCCccCCCCEEEEEECCCC
Confidence            3567888889999999999999887766432 1100 001 1111    1 144 444443      3689999999999


Q ss_pred             ceeeccccCc-------------------------------cceeEEEecCCCCeEEEeeCCCe----------------
Q 019482          145 RIILDEPKAH-------------------------------KSVLDMDFSLDSEFLATTSTDGS----------------  177 (340)
Q Consensus       145 ~~~~~~~~~~-------------------------------~~i~~~~~~~~~~~l~~~~~d~~----------------  177 (340)
                      +.+..+....                               .....++++|+...++.++.++.                
T Consensus       194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y  273 (689)
T 1yiq_A          194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLF  273 (689)
T ss_dssp             CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTT
T ss_pred             cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence            9876553210                               01125788888888888887763                


Q ss_pred             ---EEEEEccCCeeEEEeecCCC--------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC--
Q 019482          178 ---ARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR--  244 (340)
Q Consensus       178 ---v~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--  244 (340)
                         |..+|.++|+.+-.+...+.        ..+.......+|+..  -.++.++.++.++++|.++++.+.......  
T Consensus       274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~--~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  351 (689)
T 1yiq_A          274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPR--KVLMQAPKNGFFYVIDRATGELLSAKGIVPQS  351 (689)
T ss_dssp             TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEE--EEEEEECCCCeEEEEECCCCCEeccccccccc
Confidence               99999999999877764321        111112222344311  116778899999999999999874322111  


Q ss_pred             -------------------------------------CCeeEEEECCCCCEEEEeeC-----------------------
Q 019482          245 -------------------------------------KPASVLSISLDGKYLAMGSK-----------------------  264 (340)
Q Consensus       245 -------------------------------------~~i~~~~~s~~~~~l~~~~~-----------------------  264 (340)
                                                           ..-..++++|+..++++...                       
T Consensus       352 w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (689)
T 1yiq_A          352 WTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ  431 (689)
T ss_dssp             SEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred             cccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccc
Confidence                                                 01123688888888776532                       


Q ss_pred             ----------------------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          265 ----------------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       265 ----------------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                                            +|.|+.||+.+++.+-....   ..+...-.+...+.+++.++.||.++.||.+..+
T Consensus       432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence                                  37799999999998766532   2345555677788899999999999999987655

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.38  E-value=6e-10  Score=100.99  Aligned_cols=238  Identities=8%  Similarity=-0.016  Sum_probs=159.6

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccc-cCCCCCCCCCeEE-EEEecCCCeEEEccC------CCcEEEEeCCCCc
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAK-KMPPLQDAGPQKC-LSFSVDGSRFAAGGV------DGHLRIMHWPSLR  145 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------dg~i~~~d~~~~~  145 (340)
                      ++..+++++.|+.|..+|..+++........ ...   ....+.. ...  .+..+++++.      ++.|+.+|..+++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~---~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK---GSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE  201 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC---SSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC---cCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence            4567888889999999999999887766432 100   0011111 111  2335555543      6899999999999


Q ss_pred             eeeccccCcc--------------------------------ceeEEEecCCCCeEEEeeCCC-----------------
Q 019482          146 IILDEPKAHK--------------------------------SVLDMDFSLDSEFLATTSTDG-----------------  176 (340)
Q Consensus       146 ~~~~~~~~~~--------------------------------~i~~~~~~~~~~~l~~~~~d~-----------------  176 (340)
                      .+.++.....                                ....++++|++..++.++.++                 
T Consensus       202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~  281 (677)
T 1kb0_A          202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY  281 (677)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence            8765543211                                113578889888888877654                 


Q ss_pred             --eEEEEEccCCeeEEEeecCCC--------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCC
Q 019482          177 --SARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKP  246 (340)
Q Consensus       177 --~v~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  246 (340)
                        +|..+|.++++.+-.+...+.        .....+....+|+..  -.++.++.++.++++|.++++.+........+
T Consensus       282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~--~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~  359 (677)
T 1kb0_A          282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR--KVILHAPKNGFFFVLDRTNGKFISAKNFVPVN  359 (677)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred             eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEe--eEEEEECCCCEEEEEECCCCCEeccccccccC
Confidence              599999999999877664221        112223333466311  11678889999999999999987655422100


Q ss_pred             -----------e------------------------eEEEECCCCCEEEEeeC---------------------------
Q 019482          247 -----------A------------------------SVLSISLDGKYLAMGSK---------------------------  264 (340)
Q Consensus       247 -----------i------------------------~~~~~s~~~~~l~~~~~---------------------------  264 (340)
                                 +                        ..++++|++.++++...                           
T Consensus       360 ~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  439 (677)
T 1kb0_A          360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG  439 (677)
T ss_dssp             SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred             cccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccc
Confidence                       0                        25688998888887543                           


Q ss_pred             ----------------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          265 ----------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       265 ----------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                                      .|.|..||+.+++.+-....   ..++.+..+..++.+++.++.||.+++||....+
T Consensus       440 ~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence                            27799999999998765532   3456666777888888999999999999987655

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.37  E-value=3.3e-11  Score=104.48  Aligned_cols=221  Identities=10%  Similarity=0.028  Sum_probs=150.6

Q ss_pred             CCCeEEEEecC-CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE-e-cCCCeEEEcc------------------C
Q 019482           74 SGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-S-VDGSRFAAGG------------------V  132 (340)
Q Consensus        74 ~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~  132 (340)
                      ||++++....+ ..|.+.|+++.+....+..      +....+..+++ + |+++++++++                  .
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i------p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEI------PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEEC------SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeC------CCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            78888776654 5799999999886653321      12345778888 5 8999988884                  3


Q ss_pred             CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCC------------------------------------
Q 019482          133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG------------------------------------  176 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------------------------------------  176 (340)
                      ++.+.+.|.++.+...++.-.. ....++++|+|+++++++.+.                                    
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~  252 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE  252 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred             CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence            4679999999988777665433 456788999999988887543                                    


Q ss_pred             --eEEEEEccC--Cee-EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc------------EEee
Q 019482          177 --SARIWKTED--GVA-WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN------------KIGH  239 (340)
Q Consensus       177 --~v~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------~~~~  239 (340)
                        .|.+.|.++  ++. +..+...  ....++.++|||+++    ++++..+..|.++|+.+.+            ....
T Consensus       253 i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v----~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          253 LNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHL----CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             ETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEE----EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             ECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEE----EEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence              366667666  434 3444322  246789999999974    5777789999999999653            2222


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC----------ceEeeccccccc---ccceeeEEEecCCeEEEEE
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK----------MEINHWSKRLHL---GTSIALVEFCPTQRVVLTA  306 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~  306 (340)
                      .. .......++|+|+|...++...|++|.+||+.+          .+.+..+.....   ...-.++.++|||++|+++
T Consensus       327 v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          327 PE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL  405 (595)
T ss_dssp             CB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred             cC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence            22 234567899999994444556789999999987          344444432110   1111334568999999887


Q ss_pred             ec
Q 019482          307 SK  308 (340)
Q Consensus       307 ~~  308 (340)
                      ..
T Consensus       406 Nk  407 (595)
T 1fwx_A          406 SK  407 (595)
T ss_dssp             ES
T ss_pred             CC
Confidence            65

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.33  E-value=5.1e-10  Score=92.58  Aligned_cols=220  Identities=12%  Similarity=-0.022  Sum_probs=145.8

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  154 (340)
                      +..+..++.++.+..+|.. ++.......       ....+.++...+++. +..++.++.|..+|.. ++.........
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKT-------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEEC-------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcC-------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence            4567778878889999987 554433322       122345556666775 5567778899999988 77665555444


Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  234 (340)
                      ..+.++...+++..++. +  +.|..+| .+++........ ...+.++...+++.      +..++.++.+..+|. ++
T Consensus       177 ~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~------l~v~t~~~gl~~~~~-~g  244 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGT------IYVTSLDGHLYAINP-DG  244 (330)
T ss_dssp             CCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSC------EEEEETTTEEEEECT-TS
T ss_pred             CceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCe------EEEEcCCCeEEEECC-CC
Confidence            56777778777775544 4  7899999 777766655432 34588888888887      566666778888874 55


Q ss_pred             cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482          235 NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (340)
Q Consensus       235 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  314 (340)
                      +.+..+......+..+.+.+++ .|.+++.+|.|..+|. +++....... . ...+.++...++|+ |..++.+|.+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~-~-~~~~~~~~~d~~g~-l~~gt~~G~~~~  319 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFET-G-SWIIATPVIDENGT-IYFGTRNGKFYA  319 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEEC-S-SCCCSCCEECTTCC-EEEECTTSCEEE
T ss_pred             CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEc-C-CccccceEEcCCCE-EEEEcCCCeEEE
Confidence            6555555444444556666566 5666777888999996 5665544322 2 34677888878876 556888999988


Q ss_pred             EEecCCC
Q 019482          315 TKLTVPA  321 (340)
Q Consensus       315 w~~~~~~  321 (340)
                      ...+...
T Consensus       320 ~~~~~~~  326 (330)
T 3hxj_A          320 LFNLEHH  326 (330)
T ss_dssp             EEC----
T ss_pred             Eeccccc
Confidence            8765443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.33  E-value=6.4e-09  Score=83.32  Aligned_cols=222  Identities=8%  Similarity=-0.042  Sum_probs=140.7

Q ss_pred             CCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeC
Q 019482           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHW  141 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~  141 (340)
                      ..+..++|++++..|+.+. .++.|..+++...... .+..      ........+++++++..|+. -...+.|.++++
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~------~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~  108 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIR------QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEEC------TTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEE------CCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence            3478999999776666554 4678999998765432 1211      01246789999997655554 445678999998


Q ss_pred             CCCceeeccccCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      ..................++++|++..|..+..   .+.|..+++.. +....+..........+++++++..+    .+
T Consensus       109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~l----yv  183 (267)
T 1npe_A          109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQL----CW  183 (267)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEE----EE
T ss_pred             CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEE----EE
Confidence            643322212222245689999996665555543   36888888753 33333322222457899999988763    35


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  297 (340)
                      +....+.|..+|............ ......++.  ++..|+.+. .++.|..+|..+++.+..+..+. ......+++.
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~  259 (267)
T 1npe_A          184 VDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIA  259 (267)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEE
T ss_pred             EECCCCEEEEEecCCCceEEEecC-CCCceEEEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeec
Confidence            556678999999986543333332 223455665  345555554 56899999999998877764332 2247888888


Q ss_pred             cCCe
Q 019482          298 PTQR  301 (340)
Q Consensus       298 ~~~~  301 (340)
                      |++.
T Consensus       260 ~~~~  263 (267)
T 1npe_A          260 LSQC  263 (267)
T ss_dssp             CSCC
T ss_pred             CccC
Confidence            8864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.30  E-value=1.3e-09  Score=84.85  Aligned_cols=192  Identities=10%  Similarity=0.126  Sum_probs=131.3

Q ss_pred             CeEEEEEecCCCeEEEccCCC--cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEe-eCCCeEEEEEccCCeeEE
Q 019482          114 PQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWT  190 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~  190 (340)
                      ....+.|+ ++.++.+.+.+|  .|+.+|+++++......-. .........++++.|... -.++.+.+||.++.+.+.
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            34788998 666666666665  8999999999987766433 333333333335554444 468899999999999999


Q ss_pred             EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeCC
Q 019482          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKD  265 (340)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~d  265 (340)
                      ++.....    ...++++++.     ++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.+
T Consensus       122 ti~~~~e----G~glt~dg~~-----L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          122 SFNYDGE----GWGLTHNDQY-----LIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             EEECSSC----CCCEEECSSC-----EEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             EEECCCC----ceEEecCCCE-----EEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence            9875432    2344467776     4444457889999999998877765432     234567776 67655555568


Q ss_pred             CcEEEEeccCceEeecccccc----------cccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          266 GDICVVDVKKMEINHWSKRLH----------LGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       266 g~i~i~d~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +.|.+.|.++++.+..+....          .....+.|+|+|+++.|+..++.. =++|.++
T Consensus       192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W-p~~~ev~  253 (262)
T 3nol_A          192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW-PKVFEIT  253 (262)
T ss_dssp             SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC-SEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC-CceEEEE
Confidence            899999999999887664321          123568999999887777776643 2455554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.30  E-value=6.3e-09  Score=85.81  Aligned_cols=251  Identities=10%  Similarity=-0.008  Sum_probs=153.0

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCC------------CCCCCCCeEEEEEec-CC
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP------------PLQDAGPQKCLSFSV-DG  124 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~-~~  124 (340)
                      .+.+.-....+++|+++|++++++..++.|..|+..+.............            .......+..+++.+ ++
T Consensus        13 ~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g   92 (322)
T 2fp8_A           13 LIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN   92 (322)
T ss_dssp             EEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred             ecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence            34444456788999999987888888888999988765432111000000            000113578899998 66


Q ss_pred             CeEEEccCCCcEEEEeCCCCceee--ccccC--ccceeEEEecC-CCCeEEEeeC-----------------CCeEEEEE
Q 019482          125 SRFAAGGVDGHLRIMHWPSLRIIL--DEPKA--HKSVLDMDFSL-DSEFLATTST-----------------DGSARIWK  182 (340)
Q Consensus       125 ~~l~~~~~dg~i~~~d~~~~~~~~--~~~~~--~~~i~~~~~~~-~~~~l~~~~~-----------------d~~v~iwd  182 (340)
                      + |+.+...+.|..+|..+++...  .....  ......+++.+ +|++.++-..                 ++.|..+|
T Consensus        93 ~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           93 Q-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             E-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             c-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            5 4444444558888876553211  11111  12467899999 9987666432                 36788899


Q ss_pred             ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEE
Q 019482          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLA  260 (340)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~  260 (340)
                      ..+++....... . .....++++|+++.+    .++....+.|..|++....  ....+....+ ...++++++|++.+
T Consensus       172 ~~~~~~~~~~~~-~-~~p~gia~~~dg~~l----yv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          172 PSTKETTLLLKE-L-HVPGGAEVSADSSFV----LVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWV  244 (322)
T ss_dssp             TTTTEEEEEEEE-E-SCCCEEEECTTSSEE----EEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEE
T ss_pred             CCCCEEEEeccC-C-ccCcceEECCCCCEE----EEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEE
Confidence            876664332221 1 235789999999853    2444557889999987521  1111222223 67899999998766


Q ss_pred             EeeC----------CCcEEEEeccCceEeeccccccc--ccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          261 MGSK----------DGDICVVDVKKMEINHWSKRLHL--GTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       261 ~~~~----------dg~i~i~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +...          .+.|..+|.. ++.+..+.....  -..+..+++ .+++++++....+.|..+++.
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence            6544          4678888874 555544432210  134667776 577777777778888888775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.28  E-value=4e-09  Score=83.15  Aligned_cols=198  Identities=8%  Similarity=-0.026  Sum_probs=136.8

Q ss_pred             CeeEEEEcCCCCeEEEEec--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ....++|+|++..+++.+.  ++.|+++|+.+++....+...      .......+++.. ++..++...++.+.++|..
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~------~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~   94 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMD------DSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRR   94 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECC------TTCCEEEEEEET-TEEEEEETTCSEEEEEETT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecC------CCcceEEEEEeC-CEEEEEEecCCEEEEEECC
Confidence            3679999998754444443  578999999999877665321      111223455542 2344555568899999999


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCcceEEEEE
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      +.+.+..+.....  ....+++|++.++++..++.|.++|.++.+.+..+.-...    ..++.+.|. ++..     .+
T Consensus        95 t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l-----yv  166 (266)
T 2iwa_A           95 TLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV-----WA  166 (266)
T ss_dssp             TTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred             CCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE-----EE
Confidence            9888877653311  2344667888877777789999999999888887763321    135678888 6642     34


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccC-------------CCeeEEEECCCCCEEEE-eeCCCcEEEEeccCce
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLR-------------KPASVLSISLDGKYLAM-GSKDGDICVVDVKKME  277 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~  277 (340)
                      ....++.|.+.|..+++.+..+....             ...+.++|+|+++.+++ +...+.|...++....
T Consensus       167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            45567899999999999887776421             24589999999875555 5567889998887643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.28  E-value=1e-08  Score=86.40  Aligned_cols=222  Identities=11%  Similarity=0.057  Sum_probs=138.9

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~  154 (340)
                      +..++.++.++.+..+|..+++........... ... .........  +..++.+..++.+..+|..+++.........
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~-~~~-~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~  218 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS-LSL-RGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ  218 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc-eee-cCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence            457788888999999999888876655332110 000 000111121  3467888889999999999998776554321


Q ss_pred             c-------ceeEEEecC--CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          155 K-------SVLDMDFSL--DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       155 ~-------~i~~~~~~~--~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      .       .+..+.-.|  .+..++.++.++.+..+|.++++.+.....   .....+...  +..     +..++.++.
T Consensus       219 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~--~~~-----l~~~~~~g~  288 (376)
T 3q7m_A          219 ATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL---GSVNDFIVD--GNR-----IYLVDQNDR  288 (376)
T ss_dssp             -----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC---CCEEEEEEE--TTE-----EEEEETTCC
T ss_pred             CCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC---CCCCCceEE--CCE-----EEEEcCCCe
Confidence            1       011111222  356677788899999999999988766542   123344433  333     555667889


Q ss_pred             EEEEECCCCcEEeeeecc-CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceee-EEEecCCeEE
Q 019482          226 LAVYDISTWNKIGHKRLL-RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIAL-VEFCPTQRVV  303 (340)
Q Consensus       226 i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l  303 (340)
                      +..+|..+++.+-..... .........  .+..|++++.+|.|..+|..+++.+.......  ..+.. ... . +..|
T Consensus       289 l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~--~~~~~~~~~-~-~~~l  362 (376)
T 3q7m_A          289 VMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS--SGFQTEPVA-A-DGKL  362 (376)
T ss_dssp             EEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT--TCBCSCCEE-E-TTEE
T ss_pred             EEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC--CcceeCCEE-E-CCEE
Confidence            999999999877555422 222222333  35688889999999999999998876543211  22322 222 2 3467


Q ss_pred             EEEecCCcEEEEE
Q 019482          304 LTASKEWGAMITK  316 (340)
Q Consensus       304 ~~~~~dg~i~iw~  316 (340)
                      +.++.+|.++.|+
T Consensus       363 ~v~~~~G~l~~~~  375 (376)
T 3q7m_A          363 LIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEBTTSCEEEEE
T ss_pred             EEEeCCCEEEEEe
Confidence            7788899998886

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.27  E-value=7.8e-10  Score=92.09  Aligned_cols=231  Identities=8%  Similarity=-0.058  Sum_probs=141.7

Q ss_pred             CCceEEEEeCCCCCCcccCCeeeEEEecC-------CCCeeEEEEcCCCCeEEEEec--CCCEEE--EEecCceeeeeec
Q 019482           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDES-------EGDPMTIAVNPSGDDFVCSTT--NGGCKL--FEVYGGATDINLL  102 (340)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~~~~~--d~~i~i--w~~~~~~~~~~~~  102 (340)
                      ++.|.+++..        +.....++..+       ......++++|||++++++..  +..+.+  +|..+   ...+.
T Consensus        95 ~~~VsviD~~--------T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~  163 (368)
T 1mda_H           95 TDYVEVFDPV--------TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK  163 (368)
T ss_dssp             EEEEEEECTT--------TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE
T ss_pred             CCEEEEEECC--------CCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE
Confidence            4567777665        33333344322       135778999999999998875  356888  88876   22221


Q ss_pred             cccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCCC-----Cceee----ccccCccceeEEEecCCCCeEEEe
Q 019482          103 AKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWPS-----LRIIL----DEPKAHKSVLDMDFSLDSEFLATT  172 (340)
Q Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~  172 (340)
                      .      .  +.   ..+.|+++ .+++.+.||.+.+.++++     ++...    .+.-...+.   . .+++..++..
T Consensus       164 v------~--~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~v  228 (368)
T 1mda_H          164 S------A--SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWA  228 (368)
T ss_dssp             C------S--SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEEC
T ss_pred             C------C--Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEE
Confidence            1      0  11   12345543 445566788888888876     43321    111112233   3 6666666666


Q ss_pred             eCCCeEEEEEccCCe--eEEEeecC------C---CCceeeEEEccCCCcceEEEEEec-C-C-----cceEEEEECCCC
Q 019482          173 STDGSARIWKTEDGV--AWTFLTRN------S---DEKIELCRFSKDGTKPFLFCTVQR-G-D-----KALLAVYDISTW  234 (340)
Q Consensus       173 ~~d~~v~iwd~~~~~--~~~~~~~~------~---~~~v~~~~~~~~~~~~~~~~~~~~-~-~-----d~~i~i~d~~~~  234 (340)
                      +. +.+.+.|+....  .+..+...      .   ......++++|+++.+|+   ... . .     +..+.++|+.+.
T Consensus       229 s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV---~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          229 VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI---LTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE---EEEECSSCTTSCEEEEEEEESSSC
T ss_pred             cC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE---EeccccCcccccCCCEEEEECCCC
Confidence            66 999999986542  22222111      0   011223789999997432   111 1 2     234559999999


Q ss_pred             cEEeeeeccCCCeeEEEECCCCCE-EEEee-CCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          235 NKIGHKRLLRKPASVLSISLDGKY-LAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       235 ~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      +.+..+.... ....+.|+|||++ +++.. .++.|.++|+.+++.+..+..   +.....+++.+
T Consensus       305 ~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v---g~~P~~i~~~~  366 (368)
T 1mda_H          305 QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL---DKGPESLSVQN  366 (368)
T ss_dssp             CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC---CSCCCEEECCC
T ss_pred             eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC---CCCCCEEEeec
Confidence            9887776544 5788999999985 45555 489999999999999987753   33556666654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.27  E-value=1.5e-08  Score=85.45  Aligned_cols=222  Identities=8%  Similarity=0.008  Sum_probs=141.2

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      ++..+++++.++.|..+|..+++..........   ....+    ..  .+..+++++.++.|..+|..+++........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~---~~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~  172 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE---ALSRP----VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD  172 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC---CCSCC----EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc---eEcCC----EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence            456788888899999999998887665532210   01111    11  2347777888999999999999887665433


Q ss_pred             ccce-----eEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc---------e-eeEEEccCCCcceEEEEE
Q 019482          154 HKSV-----LDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK---------I-ELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       154 ~~~i-----~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~~~~~~~  218 (340)
                      ....     ......  +..++.++.++.+..+|.++++.+..........         + ..... .++.      +.
T Consensus       173 ~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~------v~  243 (376)
T 3q7m_A          173 MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGV------VF  243 (376)
T ss_dssp             C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE-ETTE------EE
T ss_pred             CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCE------EE
Confidence            2211     122222  4567788889999999999998876665321100         1 11111 1232      56


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      .++.++.+..+|.++++.+.....  .....+..  ++..+++++.++.|..+|..+++.+....... ...+...... 
T Consensus       244 ~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~-  317 (376)
T 3q7m_A          244 ALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVLY-  317 (376)
T ss_dssp             EECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEEE-
T ss_pred             EEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEEE-
Confidence            667789999999999987754432  23334433  46688888889999999999998765443111 1223333332 


Q ss_pred             CCeEEEEEecCCcEEEEEecCC
Q 019482          299 TQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                       +..|+.++.+|.+.+++....
T Consensus       318 -~~~l~v~~~~g~l~~~d~~tG  338 (376)
T 3q7m_A          318 -NGNLVVGDSEGYLHWINVEDG  338 (376)
T ss_dssp             -TTEEEEECTTSEEEEEETTTC
T ss_pred             -CCEEEEEeCCCeEEEEECCCC
Confidence             456778888888888886543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.27  E-value=1.9e-09  Score=83.94  Aligned_cols=184  Identities=15%  Similarity=0.097  Sum_probs=126.5

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeEEE
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTF  191 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~  191 (340)
                      .....+.|+ ++.+..+.+.+|.|+++|+++++.+...  ...........++++.| +..-.++.+.+||.++.+.+.+
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            345788887 4566777778889999999999987766  22333332233334444 4444688999999999999999


Q ss_pred             eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEeeCCC
Q 019482          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGSKDG  266 (340)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg  266 (340)
                      +.....  -..++  ++++.     ++.+..++.|.++|..+.+.+..+....     ..++.+.|. +|+..+..-.++
T Consensus       132 i~~~~e--GwGLt--~Dg~~-----L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~  201 (268)
T 3nok_A          132 TRYSGE--GWGLC--YWNGK-----LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSS  201 (268)
T ss_dssp             EECSSC--CCCEE--EETTE-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCS
T ss_pred             EeCCCc--eeEEe--cCCCE-----EEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCC
Confidence            875432  23443  56765     3444458899999999998877765432     245667776 776555554678


Q ss_pred             cEEEEeccCceEeecccccc-----------cccceeeEEEecCCeEEEEEecC
Q 019482          267 DICVVDVKKMEINHWSKRLH-----------LGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       267 ~i~i~d~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      .|.+.|.++++.+..+....           .....+.|+++|+++.|+..++-
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            99999999999887664321           12467899999987666655553

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.25  E-value=1.6e-09  Score=94.09  Aligned_cols=190  Identities=11%  Similarity=0.053  Sum_probs=133.6

Q ss_pred             CCCeEEEccC-CCcEEEEeCCCCceee--ccccCccceeEEEe-c-CCCCeEEEee------------------CCCeEE
Q 019482          123 DGSRFAAGGV-DGHLRIMHWPSLRIIL--DEPKAHKSVLDMDF-S-LDSEFLATTS------------------TDGSAR  179 (340)
Q Consensus       123 ~~~~l~~~~~-dg~i~~~d~~~~~~~~--~~~~~~~~i~~~~~-~-~~~~~l~~~~------------------~d~~v~  179 (340)
                      ||++++.... ++.|.+.|+.+.++..  .+... ..+..+++ + |+++++++++                  .++.+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            7887776654 5679999999988766  33322 35778887 5 8999988884                  345799


Q ss_pred             EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC------------------------------C---cceE
Q 019482          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG------------------------------D---KALL  226 (340)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------------------~---d~~i  226 (340)
                      +.|.++.+...++.-..  ....++++|+|++.|..+--+..                              .   -+.|
T Consensus       179 vID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            99999999888887433  36778899999975432210000                              0   0237


Q ss_pred             EEEECCC--CcE-EeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCce------------Eeecccccccccc
Q 019482          227 AVYDIST--WNK-IGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKME------------INHWSKRLHLGTS  290 (340)
Q Consensus       227 ~i~d~~~--~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~~~  290 (340)
                      .+.|.++  ++. +..+... ....++.++|||+++++++ .+..|.++|+.+.+            ......   .+..
T Consensus       257 ~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---vG~g  332 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---LGLG  332 (595)
T ss_dssp             EEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---CCSC
T ss_pred             EEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---CCCC
Confidence            7788877  444 3344332 3567799999999888775 57899999999763            222222   2457


Q ss_pred             eeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          291 IALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ...++|+|+|....+.-.|+.|.+|+++.
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            89999999996666777899999999976

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.22  E-value=1.5e-08  Score=78.31  Aligned_cols=195  Identities=12%  Similarity=0.159  Sum_probs=130.3

Q ss_pred             CCCeEEEEEecCCCeEEEccCC--CcEEEEeCCCCceeeccccCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCee
Q 019482          112 AGPQKCLSFSVDGSRFAAGGVD--GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~  188 (340)
                      ......+.|++ +.++.+.+.+  ..|+.+|+.+++......-.. ........+.++. ....-.++.+.+||.++.+.
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE
Confidence            35567899986 5555555554  489999999999877664332 2222222333444 44445789999999999999


Q ss_pred             EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----CCeeEEEECCCCCEEEEee
Q 019482          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----KPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~  263 (340)
                      +.++.....+  ..  +.+++..     ++.+..++.|.++|..+.+.+..+....     ..++.+.+. +|+..+..-
T Consensus        98 ~~ti~~~~~G--wg--lt~dg~~-----L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw  167 (243)
T 3mbr_X           98 RARFRYPGEG--WA--LTSDDSH-----LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW  167 (243)
T ss_dssp             EEEEECSSCC--CE--EEECSSC-----EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             EEEEeCCCCc--eE--EeeCCCE-----EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence            9998754322  33  4466766     3444458899999999998877765432     345666765 666555554


Q ss_pred             CCCcEEEEeccCceEeeccccc-----------ccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          264 KDGDICVVDVKKMEINHWSKRL-----------HLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       264 ~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      .+..|.+.|.++++.+..+...           ......+.|+++|+++.|+..++-. =++|.++.
T Consensus       168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w-p~~~~v~~  233 (243)
T 3mbr_X          168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW-PMLYEIRL  233 (243)
T ss_dssp             TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC-SEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC-CcEEEEEE
Confidence            6789999999999987765422           1124678999999877666666542 24555554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.20  E-value=2.4e-09  Score=88.44  Aligned_cols=221  Identities=13%  Similarity=0.013  Sum_probs=138.8

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      .+.++...++|. +..++.+  +..+|. +++........       ........+.  +..+..++.++.|..+|.. +
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~-------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g  126 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTK-------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-G  126 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC------------CCEEEE--TTEEEEECTTSEEEEECTT-S
T ss_pred             cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECC-------CCcccCceEE--CCEEEEEecCCEEEEEcCC-C
Confidence            356677766665 4444444  888875 44333222111       1111222233  4467777888999999988 7


Q ss_pred             ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      +...........+.++...+++. +..++.++.|..+|.. ++....+... ...+.++...+++.      +..++  +
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-~~~~~~~~~d~~g~------l~v~t--~  195 (330)
T 3hxj_A          127 TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-DAITSAASIGKDGT------IYFGS--D  195 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS-SCCCSCCEECTTCC------EEEES--S
T ss_pred             CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-CCceeeeEEcCCCE------EEEEe--C
Confidence            76655544444566677777776 5567778999999998 7776666533 34577788877887      34444  7


Q ss_pred             eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE
Q 019482          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL  304 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  304 (340)
                      .|..+| .+++...........+.++...++|. |.+++.++.|..+|. +++....... . ...+..+.+.+++. |.
T Consensus       196 ~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~-~-~~~~~~~~~~~~g~-l~  269 (330)
T 3hxj_A          196 KVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKT-G-KRIESSPVIGNTDT-IY  269 (330)
T ss_dssp             SEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEEC-S-SCCCSCCEECTTSC-EE
T ss_pred             EEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeC-C-CCccccceEcCCCe-EE
Confidence            799999 77777666655556688888888875 455666788888885 4444433322 1 22345566666665 56


Q ss_pred             EEecCCcEEEEE
Q 019482          305 TASKEWGAMITK  316 (340)
Q Consensus       305 ~~~~dg~i~iw~  316 (340)
                      .++.+|.+..++
T Consensus       270 v~t~~ggl~~~d  281 (330)
T 3hxj_A          270 FGSYDGHLYAIN  281 (330)
T ss_dssp             EECTTCEEEEEC
T ss_pred             EecCCCCEEEEC
Confidence            666777777776

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.19  E-value=1.4e-07  Score=77.09  Aligned_cols=227  Identities=11%  Similarity=0.031  Sum_probs=136.7

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC--CcEEEEeC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD--GHLRIMHW  141 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~~d~  141 (340)
                      .....++|+++|+.+++-..++.|..||...... ... .       ....+..+++.++++++++....  ..|..++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~-~-------~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHA-T-------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEE-E-------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEE-e-------CCCCceeEEEcCCCcEEEEeccCCcceEEEEcC
Confidence            5688999999998666666778898888765322 111 1       12467899999999866554332  24667777


Q ss_pred             CCCceeeccc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee-EEEeec--------CCCCceeeEEEccCCCc
Q 019482          142 PSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-WTFLTR--------NSDEKIELCRFSKDGTK  211 (340)
Q Consensus       142 ~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-~~~~~~--------~~~~~v~~~~~~~~~~~  211 (340)
                      .+++...... ........++..+++..+++-..++.|+.+|...++. +.....        ..-.....+  +|+++.
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            7766432211 1112234445455555455554688999999875432 111100        011123445  788875


Q ss_pred             ceEEEEEecCCcceEEEEECCC-CcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee--cccccc
Q 019482          212 PFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH--WSKRLH  286 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~  286 (340)
                      +    .++....+.|..||+.. ++.  ...+.. ......++++++|++.++....+.|.++|.. ++...  .+.. .
T Consensus       181 l----yv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~-~  253 (306)
T 2p4o_A          181 L----YVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ-G  253 (306)
T ss_dssp             E----EEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG-T
T ss_pred             E----EEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc-c
Confidence            3    35556778999999875 321  111111 1345678999999887777778899999975 54422  2221 1


Q ss_pred             cccceeeEEEe---cCCeEEEEEecC
Q 019482          287 LGTSIALVEFC---PTQRVVLTASKE  309 (340)
Q Consensus       287 ~~~~i~~~~~~---~~~~~l~~~~~d  309 (340)
                       ....++++|.   ||++.|+.++..
T Consensus       254 -~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          254 -VIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             -CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             -cCCceEEEEecccCCCCEEEEECCC
Confidence             2468899998   887666555443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.15  E-value=1.1e-06  Score=81.55  Aligned_cols=242  Identities=10%  Similarity=0.024  Sum_probs=152.8

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ..|.++...++|...+ |+.+| |.+|+..+...............-....|.++...++|.+ -.|+.++-|..|+..+
T Consensus       263 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~  339 (795)
T 4a2l_A          263 NYIRSLAMDSQNRLWI-GTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIR  339 (795)
T ss_dssp             SBEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGG
T ss_pred             CeEEEEEEcCCCCEEE-EeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCc
Confidence            5699999988887554 44556 9999987765432211110011113467999999988864 4566667788888665


Q ss_pred             Cceeeccc-----c-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec-------CCCCceeeEEEccCCC
Q 019482          144 LRIILDEP-----K-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-------NSDEKIELCRFSKDGT  210 (340)
Q Consensus       144 ~~~~~~~~-----~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~  210 (340)
                      ........     . ....|.++...++|+ |..|+.++-|..||..+++.......       .....|.++...+++.
T Consensus       340 ~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~  418 (795)
T 4a2l_A          340 NRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKS  418 (795)
T ss_dssp             GSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTT
T ss_pred             ccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCC
Confidence            43221111     0 123688998888876 45566677799999877654332211       1234688898888887


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEeeee----ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc--
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKR----LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR--  284 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--  284 (340)
                      .     +..++.++-|..||..+++......    .....|.++...++|++.+.. .+ .|.+||..+++.......  
T Consensus       419 ~-----lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~  491 (795)
T 4a2l_A          419 L-----VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKD  491 (795)
T ss_dssp             E-----EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTT
T ss_pred             E-----EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEcccccc
Confidence            2     2344555669999998876432221    224578899988888765544 44 499999888765443211  


Q ss_pred             --cccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          285 --LHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       285 --~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                        ......|.++...++|++.+...  +.+..|+..
T Consensus       492 ~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~  525 (795)
T 4a2l_A          492 GTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQE  525 (795)
T ss_dssp             CCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEE
T ss_pred             ccccCCceEEEEEECCCCCEEEEeC--CceEEEeCC
Confidence              11135789999999998766554  457777764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.15  E-value=2.1e-08  Score=78.09  Aligned_cols=187  Identities=11%  Similarity=0.016  Sum_probs=128.1

Q ss_pred             cCCCC--eeEEEEcCCCCeEEEEecCC--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCc
Q 019482           61 ESEGD--PMTIAVNPSGDDFVCSTTNG--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGH  135 (340)
Q Consensus        61 ~h~~~--v~~~~~~~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~  135 (340)
                      .|...  ...+.|+ ++.++.+.+.+|  .|+++|+.+++........        .........++++.| +....++.
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--------~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--------KRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--------TTCCEEEEEEETTEEEEEESSSSE
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--------CccceeEEEEeCCEEEEEEeeCCE
Confidence            35444  4789998 666666777665  8999999999877665321        222222233334444 44456889


Q ss_pred             EEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCc
Q 019482          136 LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTK  211 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~  211 (340)
                      +.+||..+.+.+.++....   ....+++|++.|+.+..++.|.++|..+.+.+..+.....    ..++.+.|. +|+.
T Consensus       109 v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l  184 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI  184 (262)
T ss_dssp             EEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred             EEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence            9999999999887776433   2234446778777777678899999999988887764221    234457776 5642


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeeecc------------CCCeeEEEECCCCCEEEEeeCC
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL------------RKPASVLSISLDGKYLAMGSKD  265 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~~d  265 (340)
                           .+..-.++.|.+.|.++++.+..+...            ....+.++++|+++.|++.+..
T Consensus       185 -----yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          185 -----FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             -----EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             -----EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence                 344456789999999999988776542            1245889999998888777653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=2.4e-07  Score=83.98  Aligned_cols=222  Identities=10%  Similarity=0.064  Sum_probs=140.4

Q ss_pred             CCCEEEEEecCceeeeeeccccCCCC------------------------CCCCCeEEEEEecCCCeEEEccCCC-----
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPL------------------------QDAGPQKCLSFSVDGSRFAAGGVDG-----  134 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~------------------------~~~~~v~~~~~~~~~~~l~~~~~dg-----  134 (340)
                      ++.|..+|..+++....+......+.                        .+......+++.|+...++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            57899999999988776643111000                        0011123478888888888887665     


Q ss_pred             --------------cEEEEeCCCCceeeccccCc---------cceeEEEecCCCC---eEEEeeCCCeEEEEEccCCee
Q 019482          135 --------------HLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLATTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       135 --------------~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~  188 (340)
                                    .|..+|.++++.+..+...+         .+.....+..+|+   .++.++.+|.++++|.++|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          39999999999887665421         1222223334565   688999999999999999998


Q ss_pred             EEEeecCC-----------CCc------------------------eeeEEEccCCCcceEEEE----------------
Q 019482          189 WTFLTRNS-----------DEK------------------------IELCRFSKDGTKPFLFCT----------------  217 (340)
Q Consensus       189 ~~~~~~~~-----------~~~------------------------v~~~~~~~~~~~~~~~~~----------------  217 (340)
                      +.......           ..+                        -..++++|+...+|+...                
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            74433111           000                        012677777665332110                


Q ss_pred             ---E------------ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          218 ---V------------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       218 ---~------------~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                         .            ....++.|..||+.+++.+-...... +.....+...+.++++++.|+.++.||.++++.+..+
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence               0            11235889999999999876655433 3333344556789999999999999999999988766


Q ss_pred             cccccccceeeEEEecCCe-EEEEEe
Q 019482          283 KRLHLGTSIALVEFCPTQR-VVLTAS  307 (340)
Q Consensus       283 ~~~~~~~~i~~~~~~~~~~-~l~~~~  307 (340)
                      .... ...-.-+.+..+|+ +++.++
T Consensus       496 ~~~~-~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          496 EAQS-GIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             ECSS-CCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCC-CcccCceEEEECCEEEEEEEe
Confidence            4332 21223445556776 455444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.12  E-value=2.1e-07  Score=74.44  Aligned_cols=228  Identities=8%  Similarity=-0.105  Sum_probs=135.2

Q ss_pred             CeEEEEecCCCEEEEEecCceeee----eeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCCCceeecc
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDI----NLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDE  150 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~  150 (340)
                      .+|+.+.. +.|+.++++......    .....      ....+..++|++++..|+. -..++.|..+++.........
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~------~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI------PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII   74 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE------EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecC------CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE
Confidence            44555554 358888887653210    01100      1135678999997655554 445688999998765433222


Q ss_pred             ccCccceeEEEecCCCCeEE-EeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC--cceEE
Q 019482          151 PKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD--KALLA  227 (340)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--d~~i~  227 (340)
                      .........++++|++..|+ +-...+.|.++++..... ..+..........++++|++..++    ++...  .+.|.
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~ly----v~~~~~~~~~I~  149 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLY----WTDWNRDNPKIE  149 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEE----EEECCSSSCEEE
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEE----EEECCCCCcEEE
Confidence            22224678999999765554 444567999999864332 223222224578999999766533    22222  46888


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  306 (340)
                      .+++..................++++|+++.|+.+. ..+.|..+|+...........   ......++.. ++.++++.
T Consensus       150 ~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d-~~~lyva~  225 (267)
T 1npe_A          150 TSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSY-GKNLYYTD  225 (267)
T ss_dssp             EEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEE-TTEEEEEE
T ss_pred             EEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC---CCCceEEEEe-CCEEEEEE
Confidence            888764332111112234578899999877766554 467899999976554333221   1234566654 45555555


Q ss_pred             ecCCcEEEEEecC
Q 019482          307 SKEWGAMITKLTV  319 (340)
Q Consensus       307 ~~dg~i~iw~~~~  319 (340)
                      ...+.|.+++...
T Consensus       226 ~~~~~v~~~d~~~  238 (267)
T 1npe_A          226 WKTNSVIAMDLAI  238 (267)
T ss_dssp             TTTTEEEEEETTT
T ss_pred             CCCCeEEEEeCCC
Confidence            5567787777643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.09  E-value=3e-06  Score=78.70  Aligned_cols=240  Identities=11%  Similarity=0.068  Sum_probs=151.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ...|.++...++|. |..|+.++-|..|+........ +........-....|.++...++|++ -.|+.++-|..|+..
T Consensus       309 ~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~  385 (795)
T 4a2l_A          309 QRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPI  385 (795)
T ss_dssp             SSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTT
T ss_pred             CCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCC
Confidence            35699999998887 4456665559999876554321 11110000112457999998888864 456667679999987


Q ss_pred             CCceeecccc--------CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec---CCCCceeeEEEccCCCc
Q 019482          143 SLRIILDEPK--------AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR---NSDEKIELCRFSKDGTK  211 (340)
Q Consensus       143 ~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~  211 (340)
                      +++.......        ....|.++...++++.|..|+.++-|..+|.++++.......   .....|.++...+++. 
T Consensus       386 ~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-  464 (795)
T 4a2l_A          386 TQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-  464 (795)
T ss_dssp             TCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-
T ss_pred             CCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-
Confidence            6654322111        134688998888887566677777799999887764332210   1234688898888887 


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeee------ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc---
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKR------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS---  282 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---  282 (340)
                           +..++. +-+.+||..+++......      .....|.++...++|++.+.. . +-|..||..+++. ...   
T Consensus       465 -----lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~~  535 (795)
T 4a2l_A          465 -----LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASIL  535 (795)
T ss_dssp             -----EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCCS
T ss_pred             -----EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecCC
Confidence                 344444 458889988765432221      123568899999888766654 4 4589999887765 211   


Q ss_pred             -cccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          283 -KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       283 -~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                       ...-....|.++...++|++.++.. . .+..|+.
T Consensus       536 ~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~  569 (795)
T 4a2l_A          536 PVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE  569 (795)
T ss_dssp             CSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred             CCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence             0111135789999999998666554 3 5666664

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.08  E-value=6.1e-08  Score=87.82  Aligned_cols=236  Identities=13%  Similarity=0.106  Sum_probs=151.8

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCC-CCCC-CCCeEEEEEecCCCeEEEccC------CCcEEEEeCCCCce
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQD-AGPQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRI  146 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~  146 (340)
                      +..++.++.|+.|..+|..+++........... .... ..++    . .++ .++++..      +|.|..+|.++++.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~----v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPR----V-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKL  190 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCE----E-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcE
Confidence            557888888999999999999887766432110 0001 1111    1 134 4555543      58999999999998


Q ss_pred             eeccccCc---c----------------------------ceeEEEecCCCCeEEEeeCCC-------------------
Q 019482          147 ILDEPKAH---K----------------------------SVLDMDFSLDSEFLATTSTDG-------------------  176 (340)
Q Consensus       147 ~~~~~~~~---~----------------------------~i~~~~~~~~~~~l~~~~~d~-------------------  176 (340)
                      +..+....   .                            ....++++|+...++.++.++                   
T Consensus       191 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~  270 (668)
T 1kv9_A          191 AWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (668)
T ss_dssp             EEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence            76653210   0                            112467888888888887665                   


Q ss_pred             eEEEEEccCCeeEEEeecCC-C-------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC---
Q 019482          177 SARIWKTEDGVAWTFLTRNS-D-------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK---  245 (340)
Q Consensus       177 ~v~iwd~~~~~~~~~~~~~~-~-------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---  245 (340)
                      .|..+|.++++.+-.+...+ .       .+.....+..+|+..  -.++.++.++.++++|..+++.+........   
T Consensus       271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~--~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  348 (668)
T 1kv9_A          271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPR--KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (668)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEE--EEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence            49999999999987776431 1       122222333355421  1167788999999999999998743322110   


Q ss_pred             ---------------------------------CeeEEEECCCCCEEEEe------------------------------
Q 019482          246 ---------------------------------PASVLSISLDGKYLAMG------------------------------  262 (340)
Q Consensus       246 ---------------------------------~i~~~~~s~~~~~l~~~------------------------------  262 (340)
                                                       .-..++++|+...+++.                              
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence                                             01126777876666542                              


Q ss_pred             ------eCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          263 ------SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       263 ------~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                            ..+|.|..||+.+++.+-....   ..+.....+...+.+++.++.||.++.|+.....
T Consensus       429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence                  1247899999999998765432   2345555566678888999999999999986544

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.05  E-value=5.8e-07  Score=81.48  Aligned_cols=284  Identities=11%  Similarity=0.005  Sum_probs=152.6

Q ss_pred             EeeeeecCCCccEEEEcCCCCcc---cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec-C
Q 019482            9 CGSWIKRPENVNLVVLGKSSRAS---SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT-N   84 (340)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-d   84 (340)
                      ++++.+.  +..+++.|+.....   ...+.-.++.+++..........   ....+.....++++.++|+.++.|+. +
T Consensus       190 ~~av~~~--~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~---~~~~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEPT--SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV---TVTKHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             EEEEETT--TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE---EECSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eEEEEec--CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc---cCCCCCCccccccCCCCCCEEEeCCCCC
Confidence            3444442  34677777653311   01223356677766655432111   11123334556788889999999884 4


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CC-----CcEEEEeCCCCceeecc----ccCc
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VD-----GHLRIMHWPSLRIILDE----PKAH  154 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~~~d~~~~~~~~~~----~~~~  154 (340)
                      ..+.+||..+.+.....      .+.....-.+++..++++.++.|+ .+     ..+.+||..+.+-...-    ....
T Consensus       265 ~~v~~yd~~t~~W~~~~------~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~  338 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGP------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML  338 (656)
T ss_dssp             TCEEEEEGGGTEEEECC------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC
T ss_pred             CceEEecCcCCceeECC------CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc
Confidence            58999999877543221      111222224556667899989888 34     46999999876533210    0000


Q ss_pred             cceeEEEecCCCCeEEEeeCC---------CeEEEEEccCCeeEEEeecCCC--------CceeeEEEcc-CCCcceEEE
Q 019482          155 KSVLDMDFSLDSEFLATTSTD---------GSARIWKTEDGVAWTFLTRNSD--------EKIELCRFSK-DGTKPFLFC  216 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d---------~~v~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~-~~~~~~~~~  216 (340)
                      ..-....+..++..++.++.+         ..+..||..+............        ..-.++.|.. +++.     
T Consensus       339 ~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i-----  413 (656)
T 1k3i_A          339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI-----  413 (656)
T ss_dssp             CCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE-----
T ss_pred             cccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeE-----
Confidence            000012233455555555444         3567888877654332221110        1123344433 4432     


Q ss_pred             EEecCCcc-----------eEEEEECCCCcEEeee--eccCC-CeeEEEECCCCCEEEEeeCC-----------CcEEEE
Q 019482          217 TVQRGDKA-----------LLAVYDISTWNKIGHK--RLLRK-PASVLSISLDGKYLAMGSKD-----------GDICVV  271 (340)
Q Consensus       217 ~~~~~~d~-----------~i~i~d~~~~~~~~~~--~~~~~-~i~~~~~s~~~~~l~~~~~d-----------g~i~i~  271 (340)
                      ++.++.+.           .+.+||..+..-....  ..... .-.++...|+++.++.|+.+           ..+.+|
T Consensus       414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence            34444321           6888888765533221  11111 23455677899999999864           468999


Q ss_pred             eccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482          272 DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      |..+.+-...-.............+.|||++++.||.
T Consensus       494 dp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          494 VPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            9988764432211111112234456789999999985

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=5e-07  Score=77.35  Aligned_cols=239  Identities=5%  Similarity=-0.033  Sum_probs=141.7

Q ss_pred             CeeEEEEcC-CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CC----cEEE
Q 019482           65 DPMTIAVNP-SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DG----HLRI  138 (340)
Q Consensus        65 ~v~~~~~~~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~~  138 (340)
                      .+..++++| ++..|+.+...+.|+.+|+......... .       .......++|++++++|+++.. ++    .+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~-------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~  209 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-S-------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYI  209 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-C-------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-c-------CCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence            467899998 4556666665577888888776543222 1       2356789999999996665543 22    2333


Q ss_pred             EeCCCCcee--eccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          139 MHWPSLRII--LDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       139 ~d~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      ++. .+...  ..+. .......++++| ++.++++-..++.|..++...+................++|+|+++++   
T Consensus       210 ~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l---  284 (430)
T 3tc9_A          210 LTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA---  284 (430)
T ss_dssp             EEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE---
T ss_pred             EeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE---
Confidence            442 22221  1111 123457789999 676666666678999999987654332322222357889999999853   


Q ss_pred             EEEecCCcceEEEEECCC--CcE--Eeeeecc---------------CCCee-EEEEC--------CCCCEEEEeeCCCc
Q 019482          216 CTVQRGDKALLAVYDIST--WNK--IGHKRLL---------------RKPAS-VLSIS--------LDGKYLAMGSKDGD  267 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~---------------~~~i~-~~~~s--------~~~~~l~~~~~dg~  267 (340)
                       .++....+.|..++...  ++.  +..+...               -.... .++..        ++|.+.++-...+.
T Consensus       285 -yv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~  363 (430)
T 3tc9_A          285 -YIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC  363 (430)
T ss_dssp             -EEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred             -EEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence             35556778899887653  211  1111111               01122 44443        34555555556778


Q ss_pred             EEEEeccCceEeecccc------c--c-------cccceeeEEEec-CCeEEEEEecCCcEEEEEec
Q 019482          268 ICVVDVKKMEINHWSKR------L--H-------LGTSIALVEFCP-TQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       268 i~i~d~~~~~~~~~~~~------~--~-------~~~~i~~~~~~~-~~~~l~~~~~dg~i~iw~~~  318 (340)
                      |+.++. .+......-.      +  .       .-.....++++| ++.++++-.....|+..+++
T Consensus       364 I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          364 IRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            998883 4544332211      0  0       012478999999 57777776667777777653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.02  E-value=5e-08  Score=89.75  Aligned_cols=200  Identities=7%  Similarity=-0.028  Sum_probs=118.4

Q ss_pred             CeEEEEEe-cCCCeEEEccC-C----CcEEEEeCCCC-ceeeccccCccceeEEEecCCCCeEEEeeCC-----CeEEEE
Q 019482          114 PQKCLSFS-VDGSRFAAGGV-D----GHLRIMHWPSL-RIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIW  181 (340)
Q Consensus       114 ~v~~~~~~-~~~~~l~~~~~-d----g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iw  181 (340)
                      .+...+|| |||++|+.+.. +    ..|+++|+.++ +.+...  .......+.|+||++.|+....|     ..|+++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence            56789999 99998875432 2    35999999988 632211  11224578999999888877655     368888


Q ss_pred             EccCCee--EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc--E--EeeeeccCCCeeEEEECCC
Q 019482          182 KTEDGVA--WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN--K--IGHKRLLRKPASVLSISLD  255 (340)
Q Consensus       182 d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~--~~~~~~~~~~i~~~~~s~~  255 (340)
                      ++.+++.  ...+..........+.|+|||+++++  .........|.++|+.++.  .  ............++.|+.+
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCI--GSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT  330 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEE--EEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEE--EecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence            8876542  22222222234567899999997543  2233456789999998752  2  2222223344455555444


Q ss_pred             CCEEEEeeCC----CcEEEEeccCc-eEee-cccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          256 GKYLAMGSKD----GDICVVDVKKM-EINH-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       256 ~~~l~~~~~d----g~i~i~d~~~~-~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +.+++....+    ..|..+|+.+. +... .+. ......+..+.+. .+.++++...++..+||-++.
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-HSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-CCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-CCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            4444444433    25677777642 2221 121 1112245566665 346667777888877777663

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.01  E-value=9.9e-07  Score=75.51  Aligned_cols=242  Identities=7%  Similarity=-0.022  Sum_probs=143.6

Q ss_pred             CCeeEEEEcCC--CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---C-cEE
Q 019482           64 GDPMTIAVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---G-HLR  137 (340)
Q Consensus        64 ~~v~~~~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~  137 (340)
                      .....++|+|+  +..|+.+...+.|+.++..++.......        .......++++++++++++-...   . .+.
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~--------~~~~P~giavd~dG~lyVad~~~~~~~~gv~  210 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT--------NIGQCADVNFTLNGDMVVVDDQSSDTNTGIY  210 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC--------CCSCEEEEEECTTCCEEEEECCSCTTSEEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec--------CCCCccEEEECCCCCEEEEcCCCCcccceEE
Confidence            34789999985  4455555544789999987766433221        22467899999999944443211   1 133


Q ss_pred             EEeCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEE
Q 019482          138 IMHWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      ..+...+...............++++| ++.++++-..++.|+.+|..++.....+. .........++|+|+++.+   
T Consensus       211 ~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~L---  287 (433)
T 4hw6_A          211 LFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWA---  287 (433)
T ss_dssp             EECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEE---
T ss_pred             EEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEE---
Confidence            333221111000111123456789999 66666565567889999988776533332 2222233469999999853   


Q ss_pred             EEEecCCcceEEEEECCC--CcE--Eeeeecc---------------CCCeeEEEE---------CCCCCEEEEeeCCCc
Q 019482          216 CTVQRGDKALLAVYDIST--WNK--IGHKRLL---------------RKPASVLSI---------SLDGKYLAMGSKDGD  267 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~---------------~~~i~~~~~---------s~~~~~l~~~~~dg~  267 (340)
                       .++....+.|..++...  +..  ...+.+.               -.....+++         .++|.+.++-...+.
T Consensus       288 -Yvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~  366 (433)
T 4hw6_A          288 -YIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT  366 (433)
T ss_dssp             -EEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred             -EEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence             35556678899988652  221  1111111               123566888         777777777677788


Q ss_pred             EEEEeccCceEeecccccc---------------cccceeeEEEe-cCCeEEEEEecCCcEEEEEec
Q 019482          268 ICVVDVKKMEINHWSKRLH---------------LGTSIALVEFC-PTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       268 i~i~d~~~~~~~~~~~~~~---------------~~~~i~~~~~~-~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      |+.++. ++......-...               .-.....++++ ++|.++++-...+.|+..+++
T Consensus       367 I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          367 VRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            999985 454432221100               01246789999 678877777777778777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.97  E-value=2.4e-06  Score=66.95  Aligned_cols=203  Identities=7%  Similarity=0.051  Sum_probs=130.6

Q ss_pred             EEecCCCCeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           58 VFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      .+.+-.+.+..++|+|++..|+ +...++.|...|.. ++....+..      ........+++.+++.++++.-.++.+
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l------~g~~D~EGIa~~~~g~~~vs~E~~~~l   93 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL------DFVKDLETIEYIGDNQFVISDERDYAI   93 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC------SSCSSEEEEEECSTTEEEEEETTTTEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec------CCCCChHHeEEeCCCEEEEEECCCCcE
Confidence            3445567899999999877555 46667778888876 554444321      122467889999988776766567889


Q ss_pred             EEEeCCCCcee---ecc------ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccC---CeeEEEee------cCCCC
Q 019482          137 RIMHWPSLRII---LDE------PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTED---GVAWTFLT------RNSDE  198 (340)
Q Consensus       137 ~~~d~~~~~~~---~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~---~~~~~~~~------~~~~~  198 (340)
                      .++++.....+   ...      .........++|+|.++.|.++.......+|.++.   ...+..+.      .....
T Consensus        94 ~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           94 YVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            99887654321   111      11223578999999887777766555555665541   11122221      11223


Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC---------CCeeEEEECCCCCEEEEeeCCCcEE
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~dg~i~  269 (340)
                      .+..++++|....+    ++.+.....+..+|.. ++.+..+....         .....++|.++|+ |+..++-+.++
T Consensus       174 d~S~l~~dp~tg~l----liLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y  247 (255)
T 3qqz_A          174 DVSGAEFNQQKNTL----LVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFY  247 (255)
T ss_dssp             CCCEEEEETTTTEE----EEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEE
T ss_pred             CceeEEEcCCCCeE----EEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEE
Confidence            47899999987764    4556778889999976 55555554432         2567899999997 44557777777


Q ss_pred             EEec
Q 019482          270 VVDV  273 (340)
Q Consensus       270 i~d~  273 (340)
                      .|.-
T Consensus       248 ~f~~  251 (255)
T 3qqz_A          248 RFTP  251 (255)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.96  E-value=5.9e-07  Score=69.41  Aligned_cols=183  Identities=7%  Similarity=-0.052  Sum_probs=122.7

Q ss_pred             CeeEEEEcCCCCeEEEEecC--CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTN--GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      -...+.|++ +..+.+.+..  ..|+.+|+.+++.........      ...-..+++. .++.......++.+.+||..
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~------~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~   93 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP------PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLA   93 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT------TCCEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC------CcceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence            366899986 5555555554  389999999998776653211      1111234443 23344455678999999999


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCcceEEEEE
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      +.+.+.++...... ..+  .++++.|+.+..++.|.++|.++.+.+..+.....    ..++.+.+. +|+.     .+
T Consensus        94 tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l-----ya  164 (243)
T 3mbr_X           94 TLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL-----LA  164 (243)
T ss_dssp             TTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EE
T ss_pred             cCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE-----EE
Confidence            99988777654322 333  45677777777788999999999988887764221    234566665 5542     34


Q ss_pred             ecCCcceEEEEECCCCcEEeeeecc-------------CCCeeEEEECCCCCEEEEeeC
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAMGSK  264 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~  264 (340)
                      ..-.+..|.+.|.++++.+..+...             ..-.+.++++|+++.|++.+.
T Consensus       165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            4446779999999999988776532             134688999998877777664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=7.3e-06  Score=75.96  Aligned_cols=242  Identities=12%  Similarity=0.034  Sum_probs=146.1

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ..|.++...++|.+.+ ++.+| +.+||..+.+..................|.++...++|. |..|+..+-|.++|..+
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~G-l~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSKG-LALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEE-EeCCc-HheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence            5688999888887555 44455 999998766543211110000001246789999888885 44455545688899876


Q ss_pred             Cceeeccc--------------cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee--------cCCCCcee
Q 019482          144 LRIILDEP--------------KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT--------RNSDEKIE  201 (340)
Q Consensus       144 ~~~~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~--------~~~~~~v~  201 (340)
                      +.......              -....|.++...++|. |..|+.++-|..++...+.......        ......|.
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            54321111              1224688998888876 5556666778888876554322111        11234688


Q ss_pred             eEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482          202 LCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (340)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  278 (340)
                      ++...+++.      +..++.++-|..||..++......   ......|.++...++|.+.+ |+.++-|..+|..+++.
T Consensus       367 ~i~~d~~g~------lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          367 SVCDDGQGK------LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             EEEECTTSC------EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE
T ss_pred             EEEEcCCCC------EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE
Confidence            898888887      455565566888998765432211   12235688888888876554 66666799999887765


Q ss_pred             eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          279 NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       279 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ............|.++...++|++.+...  +.+..++..
T Consensus       440 ~~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~  477 (781)
T 3v9f_A          440 QIIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLA  477 (781)
T ss_dssp             EECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESS
T ss_pred             EEeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCC
Confidence            44321111135789998888888665543  457777654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.95  E-value=3.3e-07  Score=71.43  Aligned_cols=181  Identities=8%  Similarity=-0.056  Sum_probs=124.2

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  145 (340)
                      ...+.|+ ++.++.+.+.+|.|+++|+++++..... ..      ....-..+++.. ++..+....++.+.+||..+.+
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~------~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL------GNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC------TTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTE
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC------CCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCc
Confidence            4688887 4556667778888999999999877665 21      111113355543 2344445578999999999999


Q ss_pred             eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCC----CceeeEEEccCCCcceEEEEEecC
Q 019482          146 IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSD----EKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      .+.++...... ..++  +|++.|+.+..++.|.++|.++.+.+..+.-...    ..++.+.|. +|+.     .+..-
T Consensus       128 ~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l-----yanvw  198 (268)
T 3nok_A          128 RERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI-----YANIW  198 (268)
T ss_dssp             EEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE-----EEEET
T ss_pred             EEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE-----EEEEC
Confidence            88777643322 3333  5678777777789999999999988887763221    134567776 6642     34445


Q ss_pred             CcceEEEEECCCCcEEeeeecc-------------CCCeeEEEECCCCCEEEEeeC
Q 019482          222 DKALLAVYDISTWNKIGHKRLL-------------RKPASVLSISLDGKYLAMGSK  264 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~  264 (340)
                      .+..|.+.|.++++.+..+...             ..-.+.++++|+++.|++.+.
T Consensus       199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            6789999999999987776542             135688999998766666554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.93  E-value=1.1e-05  Score=66.17  Aligned_cols=226  Identities=8%  Similarity=-0.085  Sum_probs=132.3

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCC----Cceeeccc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPS----LRIILDEP  151 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~----~~~~~~~~  151 (340)
                      +|+.+..+ .|+..|+.+.+.....        .....+..++|++++..|+. -...+.|..+++..    ......+.
T Consensus         3 ~ll~~~~~-~I~~i~~~~~~~~~~~--------~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~   73 (316)
T 1ijq_A            3 YLFFTNRH-EVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (316)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEE--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             EEEEECCC-eEEEEECCCcceEehh--------cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe
Confidence            44554444 4888888776543222        12356789999986655544 44568899999875    22121122


Q ss_pred             cCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC-cceEEEE
Q 019482          152 KAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-KALLAVY  229 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~  229 (340)
                      ..-.....+++.+.+. +.++-...+.|.+.++..... ..+..........++++|.+..+|    .+... .+.|..+
T Consensus        74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~P~~iavdp~~g~ly----~~d~~~~~~I~~~  148 (316)
T 1ijq_A           74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMY----WTDWGTPAKIKKG  148 (316)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEE----EEECSSSCEEEEE
T ss_pred             CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce-EEEEECCCCCcceEEeCCCCCEEE----EEccCCCCeEEEE
Confidence            2223557889987544 445555678999999875433 333222234678999999777533    22222 3788888


Q ss_pred             ECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEec
Q 019482          230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       230 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      ++............-.....++++|++..|+.+. ..+.|..+|+...................++++. .+.++++-..
T Consensus       149 ~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~  227 (316)
T 1ijq_A          149 GLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDII  227 (316)
T ss_dssp             ETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETT
T ss_pred             cCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECC
Confidence            8864332212222234578899999877776664 4578999998753322221111111245677775 4566666666


Q ss_pred             CCcEEEEEe
Q 019482          309 EWGAMITKL  317 (340)
Q Consensus       309 dg~i~iw~~  317 (340)
                      .+.|..++.
T Consensus       228 ~~~V~~~~~  236 (316)
T 1ijq_A          228 NEAIFSANR  236 (316)
T ss_dssp             TTEEEEEET
T ss_pred             CCeEEEEeC
Confidence            677766664

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.93  E-value=2.1e-06  Score=76.26  Aligned_cols=228  Identities=11%  Similarity=0.056  Sum_probs=137.2

Q ss_pred             CeEEEEec------CCCEEEEEecCceeeeeeccccCC------C-C----------------------CC-CC-CeEEE
Q 019482           76 DDFVCSTT------NGGCKLFEVYGGATDINLLAKKMP------P-L----------------------QD-AG-PQKCL  118 (340)
Q Consensus        76 ~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~------~-~----------------------~~-~~-~v~~~  118 (340)
                      ..+++++.      ++.|..+|..+++...+.......      + .                      .+ .. ....+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            34555554      788999999998877655432110      0 0                      00 00 01235


Q ss_pred             EEecCCCeEEEccCC----------------CcEEEEeCCCCceeeccccCc---------cceeEEEecCCCC---eEE
Q 019482          119 SFSVDGSRFAAGGVD----------------GHLRIMHWPSLRIILDEPKAH---------KSVLDMDFSLDSE---FLA  170 (340)
Q Consensus       119 ~~~~~~~~l~~~~~d----------------g~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~---~l~  170 (340)
                      ++.++...++.+..+                +.|..+|.++++.+..+....         ....-+...++|+   .++
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~  320 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS  320 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence            666766666655432                359999999999877654321         1111122234674   577


Q ss_pred             EeeCCCeEEEEEccCCeeEEEeecCCC------------Cce--------------------------eeEEEccCCCcc
Q 019482          171 TTSTDGSARIWKTEDGVAWTFLTRNSD------------EKI--------------------------ELCRFSKDGTKP  212 (340)
Q Consensus       171 ~~~~d~~v~iwd~~~~~~~~~~~~~~~------------~~v--------------------------~~~~~~~~~~~~  212 (340)
                      .++.+|.++++|.++++.+........            .++                          ..++++|+...+
T Consensus       321 ~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  400 (571)
T 2ad6_A          321 HIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTL  400 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEE
T ss_pred             EeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEE
Confidence            888999999999999998776543210            011                          245778877654


Q ss_pred             eEEEEE------------------ec--------------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEE
Q 019482          213 FLFCTV------------------QR--------------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLA  260 (340)
Q Consensus       213 ~~~~~~------------------~~--------------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  260 (340)
                      ++...-                  .+              ..++.|..||..+++.+-...... .+....+...+..++
T Consensus       401 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~  479 (571)
T 2ad6_A          401 YAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVW  479 (571)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEE
T ss_pred             EEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEE
Confidence            432110                  00              246899999999999876655432 222222333466788


Q ss_pred             EeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEE
Q 019482          261 MGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLT  305 (340)
Q Consensus       261 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  305 (340)
                      +++.||.|+.+|.++++.+..+.... ...-.-+.+..+|+.++.
T Consensus       480 ~g~~dg~l~a~D~~tG~~lw~~~~~~-~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          480 YATLDGYLKALDNKDGKELWNFKMPS-GGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEE
T ss_pred             EEcCCCeEEEEECCCCCEEEEEeCCC-CcEeeeEEEEECCEEEEE
Confidence            89999999999999999887665433 112233446678865443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=8.4e-06  Score=75.56  Aligned_cols=244  Identities=10%  Similarity=0.016  Sum_probs=147.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecccc--CCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK--MPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      ...|.++...++|. |..|+.++-|..++..............  ....-....|.++...+++.+ ..|+.++-|..|+
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEE
Confidence            45699999998886 5556655559999876554322111000  000112357899998887764 4556556688899


Q ss_pred             CCCCceeecc---ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEE
Q 019482          141 WPSLRIILDE---PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       141 ~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      ..++......   ......|.++...+++.+. .|+.++-+..+|.++++...... ......|.++...+++.      
T Consensus       390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~------  462 (781)
T 3v9f_A          390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK------  462 (781)
T ss_dssp             TTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE------
T ss_pred             CCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC------
Confidence            7654332211   1123468888888777654 46666778999987765432211 11235688888888877      


Q ss_pred             EEecCCcceEEEEECCCCcEEeeeecc-----CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc-ccccccc
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKRLL-----RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK-RLHLGTS  290 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~  290 (340)
                      +..++. +-|..||..+++........     ...|.++...++|++.+. +.++-|..||..+++...... ..-....
T Consensus       463 lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~  540 (781)
T 3v9f_A          463 IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNT  540 (781)
T ss_dssp             EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSC
T ss_pred             EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCe
Confidence            333444 45889998876543222222     356889999888876554 443448889987765443221 1111357


Q ss_pred             eeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          291 IALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      |.++...++|++.++.. +|.+..|+..
T Consensus       541 i~~i~~d~~g~lWi~T~-~Glv~~~d~~  567 (781)
T 3v9f_A          541 INQIYRSSKGQMWLATG-EGLVCFPSAR  567 (781)
T ss_dssp             EEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred             eEEEEECCCCCEEEEEC-CCceEEECCC
Confidence            88999988988666554 5543666543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.92  E-value=7.4e-07  Score=79.16  Aligned_cols=237  Identities=10%  Similarity=-0.014  Sum_probs=145.0

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEccC------CCcEEEEeCCCCcee
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGGV------DGHLRIMHWPSLRII  147 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~  147 (340)
                      +..++.++.|+.+..+|..+++...+.......   ....+. .... .++ .+++++.      ++.|..+|.++++.+
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~---~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~  189 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPK---VGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC---ccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEE
Confidence            567888888999999999998877655322100   000111 0011 144 4555544      789999999999887


Q ss_pred             eccccCccc--------------------------------------eeEEEecCCCCeEEEeeCC--------------
Q 019482          148 LDEPKAHKS--------------------------------------VLDMDFSLDSEFLATTSTD--------------  175 (340)
Q Consensus       148 ~~~~~~~~~--------------------------------------i~~~~~~~~~~~l~~~~~d--------------  175 (340)
                      .++......                                      ...+++.++...++.++.+              
T Consensus       190 W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~  269 (571)
T 2ad6_A          190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK  269 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce
Confidence            654322110                                      0235666765666655432              


Q ss_pred             --CeEEEEEccCCeeEEEeecCCC-C----ceee---EEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-
Q 019482          176 --GSARIWKTEDGVAWTFLTRNSD-E----KIEL---CRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-  244 (340)
Q Consensus       176 --~~v~iwd~~~~~~~~~~~~~~~-~----~v~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-  244 (340)
                        +.|..+|.++++.+-.+..... .    .+..   +...++|+...  .++.+..++.+.++|..+++.+....... 
T Consensus       270 y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~--~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~  347 (571)
T 2ad6_A          270 WTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP--LLSHIDRNGILYTLNRENGNLIVAEKVDPA  347 (571)
T ss_dssp             TTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE--EEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             eEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE--EEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence              3699999999998877753221 0    1111   22224564211  14567889999999999998876554321 


Q ss_pred             ------------CCe--------------------------eEEEECCCCCEEEEee-----------------------
Q 019482          245 ------------KPA--------------------------SVLSISLDGKYLAMGS-----------------------  263 (340)
Q Consensus       245 ------------~~i--------------------------~~~~~s~~~~~l~~~~-----------------------  263 (340)
                                  .++                          ..++++|+..++++..                       
T Consensus       348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  427 (571)
T 2ad6_A          348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA  427 (571)
T ss_dssp             CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence                        111                          2357888877777653                       


Q ss_pred             --------------CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          264 --------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       264 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                                    .+|.|..||+.+++.+-....   ..++.+..+...+..++.++.||.++.+|....+
T Consensus       428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             cceeccCccccCCCCCCeEEEEECCCCCEEEEecC---CCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence                          347899999999988765432   2234443444455667778899999999876544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.92  E-value=3.6e-06  Score=74.83  Aligned_cols=243  Identities=10%  Similarity=0.037  Sum_probs=145.4

Q ss_pred             EEEcCCCCe----EEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeE-EEEEecCCCeEEEcc------CCCcEE
Q 019482           69 IAVNPSGDD----FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK-CLSFSVDGSRFAAGG------VDGHLR  137 (340)
Q Consensus        69 ~~~~~~~~~----l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~------~dg~i~  137 (340)
                      ++++|.+..    ++.++.|+.+..+|..+++...+.......   ....+. .... .++ .+++++      .+|.|+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~---~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~  185 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLT  185 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCC---ccceeecCCEE-ECC-EEEEEecccccCCCCeEE
Confidence            455444444    888888999999999998877665321100   000111 0011 144 455554      379999


Q ss_pred             EEeCCCCceeeccccCccc-------------------------------------e-eEEEecCCCCeEEEeeCC----
Q 019482          138 IMHWPSLRIILDEPKAHKS-------------------------------------V-LDMDFSLDSEFLATTSTD----  175 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~-------------------------------------i-~~~~~~~~~~~l~~~~~d----  175 (340)
                      .+|.++++.+.++......                                     + ..+++.++..+++.+..+    
T Consensus       186 A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~  265 (599)
T 1w6s_A          186 AYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPW  265 (599)
T ss_dssp             EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred             EEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccc
Confidence            9999999987655432111                                     0 134566766777766654    


Q ss_pred             ------------CeEEEEEccCCeeEEEeecCCCC--------ceeeEEEc-cCCCcceEEEEEecCCcceEEEEECCCC
Q 019482          176 ------------GSARIWKTEDGVAWTFLTRNSDE--------KIELCRFS-KDGTKPFLFCTVQRGDKALLAVYDISTW  234 (340)
Q Consensus       176 ------------~~v~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~  234 (340)
                                  +.|..+|.++++.+-.++..+..        ...-+... .+|+...  .++.++.++.+.++|.+++
T Consensus       266 ~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~--~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          266 NETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK--LLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             CGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE--EEEEECTTSEEEEEETTTC
T ss_pred             cCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE--EEEEECCCcEEEEEECCCC
Confidence                        48999999999998777643221        01112222 4564211  1566788999999999999


Q ss_pred             cEEeeeeccC-------------CC--------------------------eeEEEECCCCCEEEEee------------
Q 019482          235 NKIGHKRLLR-------------KP--------------------------ASVLSISLDGKYLAMGS------------  263 (340)
Q Consensus       235 ~~~~~~~~~~-------------~~--------------------------i~~~~~s~~~~~l~~~~------------  263 (340)
                      +.+.......             .+                          -..++++|+..++++..            
T Consensus       344 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~  423 (599)
T 1w6s_A          344 ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML  423 (599)
T ss_dssp             CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC
T ss_pred             CEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccc
Confidence            9876544211             01                          12456777666655421            


Q ss_pred             ---------------------------CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          264 ---------------------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       264 ---------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                                                 .+|.|..||+.+++.+-.....   .+..+-.....+.+++.++.||.++.+|
T Consensus       424 ~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          424 PYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             CCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             cccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEE
Confidence                                       3478999999999877554321   2232222333556677788899888888


Q ss_pred             ecCCC
Q 019482          317 LTVPA  321 (340)
Q Consensus       317 ~~~~~  321 (340)
                      .+..+
T Consensus       501 ~~tG~  505 (599)
T 1w6s_A          501 SDTGD  505 (599)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            76544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.90  E-value=1.5e-05  Score=66.22  Aligned_cols=235  Identities=8%  Similarity=-0.087  Sum_probs=139.8

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWP  142 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~  142 (340)
                      +.-.|.+..++ .+|+.+... .|+..++.........        .....+..++|++....|+.+ ...+.|..+++.
T Consensus        34 d~~~C~~~~~~-~~ll~~~~~-~I~~i~~~g~~~~~~~--------~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~  103 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFANRI-DIRQVLPHRSEYTLLL--------NNLENAIALDFHHRRELVFWSDVTLDRILRANLN  103 (349)
T ss_dssp             TSSCEEESSSC-CEEEEECBS-CEEEECTTSCCEEEEE--------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCcccccccC-ceeEeeccc-ceEEEeCCCCeeEEee--------cCCCceEEEEEeccccEEEEEeccCCceEEEecC
Confidence            34456666663 345544443 4877777655432221        122457899999866555544 456789999987


Q ss_pred             CCceeeccccCccceeEEEecCCC-CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDS-EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      .................+++.+.+ +++++-...+.|.+.++..... ..+..........++++|.+..+|    .+..
T Consensus       104 g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly----~td~  178 (349)
T 3v64_C          104 GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIY----WTDW  178 (349)
T ss_dssp             SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEE----EEEC
T ss_pred             CCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEE----Eecc
Confidence            654333222223355788998854 4445555678999999875433 333322334578999999776532    3333


Q ss_pred             Cc-ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecC
Q 019482          222 DK-ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT  299 (340)
Q Consensus       222 ~d-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  299 (340)
                      .. +.|..+++............-...+.++++|++..|+.+. ..+.|..+|+........+. .. .....++++ ..
T Consensus       179 ~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-~~-~~~P~giav-~~  255 (349)
T 3v64_C          179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QG-LPHPFAITV-FE  255 (349)
T ss_dssp             SSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SS-CSSEEEEEE-ET
T ss_pred             CCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-CC-CCCceEEEE-EC
Confidence            44 7899998875433222222234568899999777666664 46789999987543222221 11 234677787 45


Q ss_pred             CeEEEEEecCCcEEEEE
Q 019482          300 QRVVLTASKEWGAMITK  316 (340)
Q Consensus       300 ~~~l~~~~~dg~i~iw~  316 (340)
                      +.++.+-...+.|...+
T Consensus       256 ~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          256 DSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             TEEEEEETTTTEEEEEE
T ss_pred             CEEEEecCCCCeEEEEE
Confidence            56566655566665554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.90  E-value=7.5e-06  Score=69.06  Aligned_cols=233  Identities=8%  Similarity=-0.083  Sum_probs=138.6

Q ss_pred             eeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCC
Q 019482           66 PMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSL  144 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~  144 (340)
                      -.+.+..+ ..+|+.+.. ..|+..++.........        .....+..++|.+....|+ +-...+.|..+++...
T Consensus        79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~--------~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~  148 (386)
T 3v65_B           79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLL--------NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  148 (386)
T ss_dssp             SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEEEE--------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CeECCccc-cceeEeecC-ccceeeccCCCcEEEEe--------cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            34555544 334554444 44888887665432221        1234578999998655554 4445678999998765


Q ss_pred             ceeeccccCccceeEEEecCCCC-eEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          145 RIILDEPKAHKSVLDMDFSLDSE-FLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      ...............+++.+.+. ++++-...+.|.+.++..... ..+..........++++|.+..+|    .+....
T Consensus       149 ~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly----~td~~~  223 (386)
T 3v65_B          149 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIY----WTDWGN  223 (386)
T ss_dssp             CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEE----EEECSS
T ss_pred             CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEE----EeccCC
Confidence            43332222233557788988544 445555567888888764433 333322334678999999877643    333334


Q ss_pred             -ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482          224 -ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       224 -~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                       +.|..+++............-...+.++++|++..|+.+. ..+.|..+|+........+. .. .....++++ ..+.
T Consensus       224 ~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~-~~~P~giav-~~~~  300 (386)
T 3v65_B          224 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QG-LPHPFAITV-FEDS  300 (386)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC-SS-CSSEEEEEE-ETTE
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE-CC-CCCceEEEE-ECCE
Confidence             7899998875443322222234568899998777666654 46789999987543322221 11 235677888 4556


Q ss_pred             EEEEEecCCcEEEEE
Q 019482          302 VVLTASKEWGAMITK  316 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~  316 (340)
                      ++.+-...+.|..++
T Consensus       301 ly~td~~~~~V~~~~  315 (386)
T 3v65_B          301 LYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEeeCCCCeEEEEE
Confidence            666665666666655

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.88  E-value=3.5e-07  Score=75.32  Aligned_cols=184  Identities=13%  Similarity=0.063  Sum_probs=114.8

Q ss_pred             CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc-------------------cCccceeEEEecC-CCCeEEEee
Q 019482          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP-------------------KAHKSVLDMDFSL-DSEFLATTS  173 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-------------------~~~~~i~~~~~~~-~~~~l~~~~  173 (340)
                      ...+++|.+++++++++..++.|..|+..+++......                   .....+..+++.+ +++ |+.+.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d   98 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD   98 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence            34678899999878888888999999987654321110                   0012478899998 565 45554


Q ss_pred             CCCeEEEEEccCCeeEEEeec----CCCCceeeEEEcc-CCCcceEEEEEec-----------------CCcceEEEEEC
Q 019482          174 TDGSARIWKTEDGVAWTFLTR----NSDEKIELCRFSK-DGTKPFLFCTVQR-----------------GDKALLAVYDI  231 (340)
Q Consensus       174 ~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~~~~~~~~~~-----------------~~d~~i~i~d~  231 (340)
                      ..+.+..+|..+++. ..+..    ........+++.+ +|..     .++.                 ..++.|..||.
T Consensus        99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l-----~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIV-----YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCE-----EEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEE-----EEECCcccccccccceehcccCCCceEEEEeC
Confidence            455688888765532 22221    1112467899999 8863     2221                 12477999998


Q ss_pred             CCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCce--EeecccccccccceeeEEEecCCeEEEEEec
Q 019482          232 STWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKME--INHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       232 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      .+++....... ......++++|+|+.|+++ ..++.|..|++....  ....+.. . .. ...+++.++|++.++...
T Consensus       173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-SS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-CC-CCCeEECCCCCEEEEecC
Confidence            77664322222 2345679999999877666 456889999987521  0111111 1 22 678999999987766644

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.87  E-value=1.5e-06  Score=78.87  Aligned_cols=247  Identities=12%  Similarity=0.098  Sum_probs=137.5

Q ss_pred             eEEEEcC-CCCeEEEEecCC-----------CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-C
Q 019482           67 MTIAVNP-SGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D  133 (340)
Q Consensus        67 ~~~~~~~-~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d  133 (340)
                      ...++.| +++.++.|+.+.           .+.+||+.+++....... .   ..+.....++++.++++.++.|+. +
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~-~---~~~~~~~~~~~~~~~g~lyv~GG~~~  264 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT-V---TKHDMFCPGISMDGNGQIVVTGGNDA  264 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE-E---CSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc-C---CCCCCccccccCCCCCCEEEeCCCCC
Confidence            3667777 888888877543           578898887654321111 0   012233445778889999999884 4


Q ss_pred             CcEEEEeCCCCceeeccccCc-cceeEEEecCCCCeEEEee-CC-----CeEEEEEccCCeeEEEeecC----CCCceee
Q 019482          134 GHLRIMHWPSLRIILDEPKAH-KSVLDMDFSLDSEFLATTS-TD-----GSARIWKTEDGVAWTFLTRN----SDEKIEL  202 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-~d-----~~v~iwd~~~~~~~~~~~~~----~~~~v~~  202 (340)
                      ..+.+||..+.+-...-.... ..-.+++..+++++++.|+ .+     ..+.+||..+++-.. +...    ....-..
T Consensus       265 ~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~  343 (656)
T 1k3i_A          265 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQ  343 (656)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTT
T ss_pred             CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCcccccccccccc
Confidence            579999988765332211111 1223455667899999988 34     579999998765322 2100    0000001


Q ss_pred             EEEccCCCcceEEE-----EEecCCcceEEEEECCCCcEEeeeeccC---------CCeeEEEEC-CCCCEEEEeeCCC-
Q 019482          203 CRFSKDGTKPFLFC-----TVQRGDKALLAVYDISTWNKIGHKRLLR---------KPASVLSIS-LDGKYLAMGSKDG-  266 (340)
Q Consensus       203 ~~~~~~~~~~~~~~-----~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~s-~~~~~l~~~~~dg-  266 (340)
                      ..+..++.. +++.     ....+....+..||..+..-........         ..-.++.+. .++++++.|+.++ 
T Consensus       344 ~~~~~~~~i-yv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~  422 (656)
T 1k3i_A          344 GLYRSDNHA-WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  422 (656)
T ss_dssp             GGGTTTCSC-CEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             ceeecCCce-EEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCC
Confidence            112233332 1110     1112234567889988765332222111         122344443 3778888887542 


Q ss_pred             ----------cEEEEeccCceEeecc-cccccccceeeEEEecCCeEEEEEecC-----------CcEEEEEecC
Q 019482          267 ----------DICVVDVKKMEINHWS-KRLHLGTSIALVEFCPTQRVVLTASKE-----------WGAMITKLTV  319 (340)
Q Consensus       267 ----------~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~~  319 (340)
                                .|.+||..+..-.... ........-.++...|++++++.|+.+           ..+.+||...
T Consensus       423 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          423 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             CCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence                      6788888776544322 111212223455677899999999865           4578888754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.87  E-value=2.1e-05  Score=65.30  Aligned_cols=206  Identities=3%  Similarity=-0.073  Sum_probs=125.4

Q ss_pred             CCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEe
Q 019482           63 EGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMH  140 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d  140 (340)
                      ...+..++|++.+..|+.+. ..+.|+.++++..........       .......+++.+.+..| ++-...+.|.+.+
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~  144 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  144 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-------SCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC-------CCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence            34588999998666665544 557788888876543222111       12345788998755444 5545567899999


Q ss_pred             CCCCceeeccccCccceeEEEecCCCCeEEEee-CC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      +..................++++|.+..|..+. .. +.|...++... ....+....-.....++++|++..+|    .
T Consensus       145 ~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~~~~PnGla~d~~~~~lY----~  219 (349)
T 3v64_C          145 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMY----W  219 (349)
T ss_dssp             TTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCCSSCSCEEEEEEETTTTEEE----E
T ss_pred             CCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEECCCCCcceEEEeCCCCEEE----E
Confidence            875433322222334678999999655554443 44 77888887643 33333222234578999999877643    4


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      +....+.|..+|+..................+++ ..+..+++-...+.|..++..+++....
T Consensus       220 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          220 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEI  281 (349)
T ss_dssp             EETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             EECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEE
Confidence            4556788999998754432223222345567777 3444555555677888888656554433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.86  E-value=5.8e-07  Score=82.71  Aligned_cols=195  Identities=11%  Similarity=0.019  Sum_probs=112.2

Q ss_pred             CeeEEEEc-CCCCeEEEEec-CC----CEEEEEecCc-eeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----
Q 019482           65 DPMTIAVN-PSGDDFVCSTT-NG----GCKLFEVYGG-ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----  133 (340)
Q Consensus        65 ~v~~~~~~-~~~~~l~~~~~-d~----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----  133 (340)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +......         ......++|+||++.|+....+    
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---------~~~~~~~~WspDg~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---------SGTNGEIVWGPDHTSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---------EEECSCCEECSSTTEEEEEEECTTCC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---------cCceeeEEEecCCCEEEEEEECCCCC
Confidence            57789999 99998886543 23    4999999887 5221110         0113467899999988777654    


Q ss_pred             -CcEEEEeCCCCcee--eccc-cCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCe-eE--EEeecCCCCceeeE
Q 019482          134 -GHLRIMHWPSLRII--LDEP-KAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGV-AW--TFLTRNSDEKIELC  203 (340)
Q Consensus       134 -g~i~~~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~-~~--~~~~~~~~~~v~~~  203 (340)
                       ..|+.+++.+++..  ..+. ........+.|+|||++|+..+.   ...|+++|+.++. ..  ..+.........++
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~  325 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV  325 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE
Confidence             35888888775421  2221 12234567899999998876652   3468888987752 22  33433333444555


Q ss_pred             EEccCCCcceEEEEEecC---CcceEEEEECCCCcEEee-eeccCC--CeeEEEECCCCCEEEEeeCCCc--EEEEec
Q 019482          204 RFSKDGTKPFLFCTVQRG---DKALLAVYDISTWNKIGH-KRLLRK--PASVLSISLDGKYLAMGSKDGD--ICVVDV  273 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~~dg~--i~i~d~  273 (340)
                      .|+. +..++   +.+..   ....|..+|+.++..... +..+..  .+..+.+. .+.++++...++.  |.++|+
T Consensus       326 ~~~~-g~~l~---~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          326 QMHG-TSHLV---ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEET-TTEEE---EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eeee-CCEEE---EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            5443 55422   22221   345788888875322122 222332  34445554 2344555666775  555564

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.85  E-value=2.2e-06  Score=69.95  Aligned_cols=193  Identities=13%  Similarity=0.017  Sum_probs=118.2

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC--CeEEEEEccCCeeEE
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--GSARIWKTEDGVAWT  190 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~v~iwd~~~~~~~~  190 (340)
                      .....++|+++++++++-..++.|..||.... ..... ........+++.++++++++....  ..|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999999987777667889999997653 22222 223468899999999866655332  247777777776543


Q ss_pred             EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE-Eeeee---------ccCCCeeEEEECCCCCEEE
Q 019482          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK-IGHKR---------LLRKPASVLSISLDGKYLA  260 (340)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~---------~~~~~i~~~~~s~~~~~l~  260 (340)
                      ............++..+++..     +++...++.|..+|..+++. +....         ..-...+.+  +|++++|+
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~-----~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQY-----LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEE-----EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEeCCCccccCcccccCCCcE-----EEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            332212222344555554432     34445678899999876531 11100         001123445  78887776


Q ss_pred             Eee-CCCcEEEEeccC-ceEe--ecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          261 MGS-KDGDICVVDVKK-MEIN--HWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       261 ~~~-~dg~i~i~d~~~-~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      ++. ..+.|..|++.. ++..  ..+.  . ......++++++|+++++....+.|.+++.
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~--~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFV--E-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEE--E-SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEe--c-cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            654 567899999875 3221  1111  1 135678999999988777777788888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.82  E-value=1.1e-05  Score=68.13  Aligned_cols=207  Identities=3%  Similarity=-0.093  Sum_probs=127.0

Q ss_pred             CCCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEe
Q 019482           63 EGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMH  140 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d  140 (340)
                      ...+..++|++.+..|+.+ ...+.|+.++++..........       .......+++.+.+..| ++-...+.|.+.+
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~-------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~  187 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST-------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN  187 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS-------SCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC-------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence            3458899999866655544 4557788888876543222211       11344678888755444 4545567899888


Q ss_pred             CCCCceeeccccCccceeEEEecCCCCeEEEee-CC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS-TD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      +..................++++|.+..|+.+. .. +.|..+++.... ...+....-.....++++|++..+    .+
T Consensus       188 ~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGlavd~~~~~l----Y~  262 (386)
T 3v65_B          188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRM----YW  262 (386)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEEGGGTEE----EE
T ss_pred             CCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCeeeEEEeCCCCEE----EE
Confidence            765443322323334678999999666555544 33 678888876433 333322223457899999887764    34


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      +....+.|..+|+..................+++ ..+..+++-...+.|..+|..+++....+
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          263 VDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            4566788999998754433223323345567777 34455555556788998886666555444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.79  E-value=3.1e-05  Score=65.56  Aligned_cols=226  Identities=9%  Similarity=-0.057  Sum_probs=134.0

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCC----ceeeccc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSL----RIILDEP  151 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~----~~~~~~~  151 (340)
                      +|+.+.. ..|+..++.........        .....+..++|++....|+.+ ...+.|+.+++...    .......
T Consensus        85 ~ll~~~~-~~I~~i~l~~~~~~~~~--------~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           85 YLFFTNR-HEVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             EEEEEET-TEEEEECTTSCSCEEEE--------CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred             eeEEecc-ceeEEEccCCcceeEec--------cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence            4555444 45888888765432221        133577899999866655554 45678888888652    1222222


Q ss_pred             cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      ........+++.+ .+++.++-...+.|.+.+++.......+. ........+++.|.+..+|.   .-.+..+.|...+
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~---td~~~~~~I~~~~  231 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG  231 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEE---EECSSSCCEEEEE
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEE---EeCCCCCEEEEEe
Confidence            2334677899988 45555555567899999987554433333 23345789999997765331   2223347888888


Q ss_pred             CCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       231 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      +............-.....++++|++..|+.+. ..+.|..+|+..............-....++++. .+.++.+-...
T Consensus       232 ~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~  310 (400)
T 3p5b_L          232 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  310 (400)
T ss_dssp             TTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSS
T ss_pred             CCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCC
Confidence            875443322233335678899999877777764 4678999998764433222111111234567763 34555566556


Q ss_pred             CcEEEEE
Q 019482          310 WGAMITK  316 (340)
Q Consensus       310 g~i~iw~  316 (340)
                      +.|..++
T Consensus       311 ~~V~~~~  317 (400)
T 3p5b_L          311 EAIFSAN  317 (400)
T ss_dssp             CSEEEEE
T ss_pred             CeEEEEE
Confidence            6666665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.79  E-value=1.1e-05  Score=63.24  Aligned_cols=198  Identities=9%  Similarity=0.048  Sum_probs=122.3

Q ss_pred             CCeEEEEEecCCCeE-EEccCCCcEEEEeCCCCceeeccc-cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee--
Q 019482          113 GPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA--  188 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~--  188 (340)
                      ..+..++|+|+++.| ++...++.|...|.. ++....+. ........+++.+++.++++.-.++.+.++++.....  
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence            468999999976655 456678889999987 77665553 2234677889999888777766778999998865442  


Q ss_pred             -EEEee-----cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC-CCcEEeeee-------ccCCCeeEEEECC
Q 019482          189 -WTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS-TWNKIGHKR-------LLRKPASVLSISL  254 (340)
Q Consensus       189 -~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~-------~~~~~i~~~~~s~  254 (340)
                       +....     ...+.....++|+|.+..+++   +....-..|..|+-. ....+....       ..-..+..++++|
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v---a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp  182 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF---FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ  182 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEE---EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEE---EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence             22221     122334689999999876432   222222355556511 111111111       1223578999999


Q ss_pred             C-CCEEEEeeCCCcEEEEeccCceEeeccccc--cc-----ccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          255 D-GKYLAMGSKDGDICVVDVKKMEINHWSKRL--HL-----GTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       255 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      . +++++....+..|..+|.+.. ++..+...  ..     -.....|+|.++|++.++ ++-+  .+|.+.
T Consensus       183 ~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n--~~y~f~  250 (255)
T 3qqz_A          183 QKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPN--RFYRFT  250 (255)
T ss_dssp             TTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTT--EEEEEE
T ss_pred             CCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCc--eEEEEE
Confidence            6 455666666788999997654 43332211  10     125689999999986666 5554  455553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.79  E-value=8.6e-06  Score=72.44  Aligned_cols=221  Identities=11%  Similarity=0.038  Sum_probs=134.5

Q ss_pred             CCCEEEEEecCceeeeeeccccCCC-----------------------------CC-CCCCe-EEEEEecCCCeEEEccC
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPP-----------------------------LQ-DAGPQ-KCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~-----------------------------~~-~~~~v-~~~~~~~~~~~l~~~~~  132 (340)
                      ++.|+.+|..+++...+........                             .. ....+ ..+++.++..+++.+..
T Consensus       181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g  260 (599)
T 1w6s_A          181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG  260 (599)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence            7889999999988776654321100                             00 00011 13556677777777665


Q ss_pred             C----------------CcEEEEeCCCCceeeccccCcc---------ceeEEEec-CCC---CeEEEeeCCCeEEEEEc
Q 019482          133 D----------------GHLRIMHWPSLRIILDEPKAHK---------SVLDMDFS-LDS---EFLATTSTDGSARIWKT  183 (340)
Q Consensus       133 d----------------g~i~~~d~~~~~~~~~~~~~~~---------~i~~~~~~-~~~---~~l~~~~~d~~v~iwd~  183 (340)
                      +                +.|..+|.++++....+...+.         ...-+... .+|   ..++.++.+|.++++|.
T Consensus       261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             CCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEEC
Confidence            4                3799999999998776654321         11112222 467   46777889999999999


Q ss_pred             cCCeeEEEeecCC------------CCce--------------------------eeEEEccCCCcceEEE---------
Q 019482          184 EDGVAWTFLTRNS------------DEKI--------------------------ELCRFSKDGTKPFLFC---------  216 (340)
Q Consensus       184 ~~~~~~~~~~~~~------------~~~v--------------------------~~~~~~~~~~~~~~~~---------  216 (340)
                      ++++.+.......            ..++                          ..++++|+...++...         
T Consensus       341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~  420 (599)
T 1w6s_A          341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (599)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeec
Confidence            9999887654221            0011                          2456777766433211         


Q ss_pred             -----------------EEe--cC------CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEE
Q 019482          217 -----------------TVQ--RG------DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV  271 (340)
Q Consensus       217 -----------------~~~--~~------~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~  271 (340)
                                       +..  .+      ..+.|..||+.+++.+-...... +...-.+...+.+++.++.|+.++.|
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~gt~dg~l~A~  499 (599)
T 1w6s_A          421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKAR  499 (599)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred             ccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEecCCEEEEECCCCeEEEE
Confidence                             011  12      45889999999999876554321 22211122356788889999999999


Q ss_pred             eccCceEeecccccccccceeeEEEecCCe-EEEEE
Q 019482          272 DVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTA  306 (340)
Q Consensus       272 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  306 (340)
                      |.++++.+-...... .....-+.+..+|+ ++++.
T Consensus       500 D~~tG~~lW~~~l~~-g~~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          500 DSDTGDLLWKFKIPS-GAIGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             ETTTCCEEEEEECSS-CCCSCCEEEEETTEEEEEEE
T ss_pred             ECCCCCEEEEeeCCC-CcEeccEEEEeCCEEEEEEE
Confidence            999999887664332 22233456667886 44443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.78  E-value=1.9e-06  Score=76.62  Aligned_cols=172  Identities=10%  Similarity=0.013  Sum_probs=106.8

Q ss_pred             CcEEEEeCCCCceeeccccC-cc--------ceeEEEec-CCCC---eEEEeeCCCeEEEEEccCCeeEEEeecCCC---
Q 019482          134 GHLRIMHWPSLRIILDEPKA-HK--------SVLDMDFS-LDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSD---  197 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~-~~--------~i~~~~~~-~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---  197 (340)
                      +.|..+|..+++.+..+... +.        ...-+... .+|+   .++.++.+|.++++|.++++.+........   
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~  370 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW  370 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence            57999999999988776432 11        11112222 4664   688899999999999999998766543210   


Q ss_pred             ---------Cc--------------------------------eeeEEEccCCCcceEEEEE------------------
Q 019482          198 ---------EK--------------------------------IELCRFSKDGTKPFLFCTV------------------  218 (340)
Q Consensus       198 ---------~~--------------------------------v~~~~~~~~~~~~~~~~~~------------------  218 (340)
                               .+                                -..++++|+...++....-                  
T Consensus       371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~  450 (582)
T 1flg_A          371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY  450 (582)
T ss_dssp             EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred             cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence                     00                                0134566665543321100                  


Q ss_pred             ----------ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc
Q 019482          219 ----------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG  288 (340)
Q Consensus       219 ----------~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  288 (340)
                                ....++.|..||+.+++.+-...... +...-.....+.+++.++.|+.++.||.++++.+..+.... .
T Consensus       451 ~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~-g  528 (582)
T 1flg_A          451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-G  528 (582)
T ss_dssp             CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-C
T ss_pred             eccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC-C
Confidence                      01236889999999999875554432 22221222246788889999999999999999987665432 2


Q ss_pred             cceeeEEEecCCe-EEEEEe
Q 019482          289 TSIALVEFCPTQR-VVLTAS  307 (340)
Q Consensus       289 ~~i~~~~~~~~~~-~l~~~~  307 (340)
                      ....-+.+..+|+ ++++.+
T Consensus       529 ~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          529 IVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             CCSCCEEEEETTEEEEEEEE
T ss_pred             cccCceEEEECCEEEEEEEc
Confidence            2223367778886 444433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.75  E-value=1.2e-05  Score=71.51  Aligned_cols=240  Identities=14%  Similarity=0.078  Sum_probs=143.1

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCC-CCC-CCCCeEEEEEe-cCCC-eEEEcc------CCCcEEEEeCCCC
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMP-PLQ-DAGPQKCLSFS-VDGS-RFAAGG------VDGHLRIMHWPSL  144 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~-~~~~-~l~~~~------~dg~i~~~d~~~~  144 (340)
                      +..++.++.++.|..+|..+++...+....... ... ...++  +.=. .+++ .++++.      .++.|..+|.+++
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG  194 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTG  194 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCC
Confidence            557888888999999999999877665332100 000 11121  1100 1233 555654      3789999999999


Q ss_pred             ceeeccccCcc-----------------------------------------ceeEEEecCCCCeEEEeeC---------
Q 019482          145 RIILDEPKAHK-----------------------------------------SVLDMDFSLDSEFLATTST---------  174 (340)
Q Consensus       145 ~~~~~~~~~~~-----------------------------------------~i~~~~~~~~~~~l~~~~~---------  174 (340)
                      +.+........                                         .-..++++|+..+++.+..         
T Consensus       195 ~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~  274 (582)
T 1flg_A          195 EEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWA  274 (582)
T ss_dssp             CEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGG
T ss_pred             CEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcc
Confidence            87764432100                                         0013456676666665552         


Q ss_pred             -----------C----CeEEEEEccCCeeEEEeecCC-CC----ceee-EEEc---cCCCcceEEEEEecCCcceEEEEE
Q 019482          175 -----------D----GSARIWKTEDGVAWTFLTRNS-DE----KIEL-CRFS---KDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       175 -----------d----~~v~iwd~~~~~~~~~~~~~~-~~----~v~~-~~~~---~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                                 |    +.|..+|.++++.+-.++..+ +.    .+.. +.+.   .+|+..-  .++.++.++.++++|
T Consensus       275 r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~--~v~~~~~~G~l~~lD  352 (582)
T 1flg_A          275 RTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVK--ATAHADRNGFFYVVD  352 (582)
T ss_dssp             GSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEE--EEEEECTTSEEEEEE
T ss_pred             cccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEE--EEEEECCCceEEEEE
Confidence                       2    689999999999987775322 11    0111 1122   3564211  156788999999999


Q ss_pred             CCCCcEEeeeeccC-------------CC--------------------------------eeEEEECCCCCEEEEee--
Q 019482          231 ISTWNKIGHKRLLR-------------KP--------------------------------ASVLSISLDGKYLAMGS--  263 (340)
Q Consensus       231 ~~~~~~~~~~~~~~-------------~~--------------------------------i~~~~~s~~~~~l~~~~--  263 (340)
                      .++++.+.......             .+                                -..++++|+...+++..  
T Consensus       353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~  432 (582)
T 1flg_A          353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH  432 (582)
T ss_dssp             TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred             CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence            99998875544321             00                                01346677655555432  


Q ss_pred             -------------------------------CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE
Q 019482          264 -------------------------------KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (340)
Q Consensus       264 -------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  312 (340)
                                                     .+|.|..||+.+++.+-.....   .++..-.....+.+++.++.||.+
T Consensus       433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l  509 (582)
T 1flg_A          433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYF  509 (582)
T ss_dssp             EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEE
T ss_pred             cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcE
Confidence                                           2578999999999877554321   233332233345677778899999


Q ss_pred             EEEEecCCC
Q 019482          313 MITKLTVPA  321 (340)
Q Consensus       313 ~iw~~~~~~  321 (340)
                      +.+|.+..+
T Consensus       510 ~A~D~~tG~  518 (582)
T 1flg_A          510 KAFDAKSGK  518 (582)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCC
Confidence            888876544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=4.6e-05  Score=65.57  Aligned_cols=245  Identities=7%  Similarity=-0.059  Sum_probs=143.3

Q ss_pred             eeEEEEcC-CCCeEEEEec-CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE-------ecCCCeEEEccCCC--
Q 019482           66 PMTIAVNP-SGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF-------SVDGSRFAAGGVDG--  134 (340)
Q Consensus        66 v~~~~~~~-~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg--  134 (340)
                      ...|+|+| ++..|+.+.. .+.|++.|+..+..........    ........++|       +++++.|+++...+  
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~----~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINT----IPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTT----SSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCc----cccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            56899998 3555555444 4568888887766543322110    12345899999       99999666665443  


Q ss_pred             -----cEEEEeCCC-Ccee-----eccccCccceeEEEecCC-CCeEEEeeCCCeEEEEEcc-------CCee-------
Q 019482          135 -----HLRIMHWPS-LRII-----LDEPKAHKSVLDMDFSLD-SEFLATTSTDGSARIWKTE-------DGVA-------  188 (340)
Q Consensus       135 -----~i~~~d~~~-~~~~-----~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~-------~~~~-------  188 (340)
                           .|.+++... +...     ..+. .-.....++++|+ +.++++-..++.|..+|+.       ++..       
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             cccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence                 266665333 2221     1111 1124567889995 4445555577889999997       5543       


Q ss_pred             ----EEE-eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECC--CCcE--Eeeeecc---C------------
Q 019482          189 ----WTF-LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS--TWNK--IGHKRLL---R------------  244 (340)
Q Consensus       189 ----~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~~~---~------------  244 (340)
                          ... +..........++|+|+++.+    .++-.....|+.+|..  .+..  ...+.+.   .            
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~l----YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f  371 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTGKYA----YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM  371 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTSSEE----EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred             cccccceeEecCCCCCceEEEEcCCCCEE----EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence                112 222223456899999999853    3555677888886653  3321  0112111   0            


Q ss_pred             CCee-EEEEC-------CCCCEEEEeeCCCcEEEEeccCceEeecccc------------ccc---------ccceeeEE
Q 019482          245 KPAS-VLSIS-------LDGKYLAMGSKDGDICVVDVKKMEINHWSKR------------LHL---------GTSIALVE  295 (340)
Q Consensus       245 ~~i~-~~~~s-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~---------~~~i~~~~  295 (340)
                      .... .+...       ++|.++++=..+..|+.++ .++......-.            +..         -.....|+
T Consensus       372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa  450 (496)
T 3kya_A          372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV  450 (496)
T ss_dssp             SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred             CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence            1123 34454       4566666666778899998 44543322111            000         12467899


Q ss_pred             EecC-CeEEEEEecCCcEEEEEecCC
Q 019482          296 FCPT-QRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       296 ~~~~-~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      ++++ |.++++=.....|+.++++..
T Consensus       451 vd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          451 YDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCEEEEEeCCCCEEEEEECCCC
Confidence            9997 887777777788888888654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.69  E-value=1.6e-05  Score=64.69  Aligned_cols=190  Identities=11%  Similarity=0.145  Sum_probs=120.1

Q ss_pred             CCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCC----CC---eEEEeeC---CCeEEEEEcc-CCeeEEE
Q 019482          123 DGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD----SE---FLATTST---DGSARIWKTE-DGVAWTF  191 (340)
Q Consensus       123 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~~~~---d~~v~iwd~~-~~~~~~~  191 (340)
                      ...+++.....+-+.+||+ +++.+..+..  +.++.+..-|+    |+   ++++...   +++|.+|++. ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3445666667788999999 7887777643  45666666552    32   2333333   5799999773 2223444


Q ss_pred             eec---C--CC-CceeeEEE--ccCCCcceEEEEEecCCcceEEEEECC---C----CcEEeeeeccCCCeeEEEECCCC
Q 019482          192 LTR---N--SD-EKIELCRF--SKDGTKPFLFCTVQRGDKALLAVYDIS---T----WNKIGHKRLLRKPASVLSISLDG  256 (340)
Q Consensus       192 ~~~---~--~~-~~v~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~---~----~~~~~~~~~~~~~i~~~~~s~~~  256 (340)
                      +..   .  .. ..+..+++  +|.....+   ++....++.+..|++.   .    .+.++.+.. ...+..+...+..
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~y---afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~  191 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYY---AMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEY  191 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEE---EEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEE---EEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCC
Confidence            421   0  11 45677777  67544322   4566677999998883   2    344555554 3567888899988


Q ss_pred             CEEEEeeCCCcEEEEecc-----CceEeecccccccccceeeEEEe--cCCe-EEEEEe-cCCcEEEEEecC
Q 019482          257 KYLAMGSKDGDICVVDVK-----KMEINHWSKRLHLGTSIALVEFC--PTQR-VVLTAS-KEWGAMITKLTV  319 (340)
Q Consensus       257 ~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~l~~~~-~dg~i~iw~~~~  319 (340)
                      ..|+.+-++..|..|+.+     +++.+......+....+..|++-  ++++ +|++++ .+....+|+...
T Consensus       192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            999999998777777754     34455443333434468888884  4554 555555 678999999863

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.64  E-value=0.00012  Score=60.30  Aligned_cols=233  Identities=11%  Similarity=0.045  Sum_probs=122.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecC-ceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYG-GATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      ...+.++.|++ +..++ ++..+.  |+...+ ++.-......    ....+.+..+.+.+++..++.+. +|.|..- .
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~--i~~S~DgG~tW~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S-~  148 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPI--MLHTTDGGQSWSQIPLD----PKLPGSPRLIKALGNGSAEMITN-VGAIYRT-K  148 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTE--EEEESSTTSSCEECCCC----TTCSSCEEEEEEEETTEEEEEET-TCCEEEE-S
T ss_pred             CccEEEEEecC-CeEEE-EECCCe--EEEECCCCCCceECccc----cCCCCCeEEEEEECCCCEEEEeC-CccEEEE-c
Confidence            34588899976 44444 455563  333333 3322221110    01224567888877776666554 5544321 1


Q ss_pred             CCCceee-ccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          142 PSLRIIL-DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       142 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      ..++.-. ........+..+.+.|++.+++.+. ++.+..-+-..++.-..+.......+..+.+.+++.      +...
T Consensus       149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~------~~~~  221 (327)
T 2xbg_A          149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR------LWMI  221 (327)
T ss_dssp             STTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC------EEEE
T ss_pred             CCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC------EEEE
Confidence            2232211 1123344688999999888777665 454443321113332223323345688899999887      3444


Q ss_pred             CCcceEEEEECCCCcEEeeeec----cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc-ccccceeeEE
Q 019482          221 GDKALLAVYDISTWNKIGHKRL----LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL-HLGTSIALVE  295 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~  295 (340)
                      +.++.+++.+.+.++.-.....    ....+..+.+.+++..++++. +|.| ++....++.-..+... .....+.++.
T Consensus       222 ~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~  299 (327)
T 2xbg_A          222 VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKIL  299 (327)
T ss_dssp             ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEE
T ss_pred             eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEE
Confidence            5567777764332332222221    123578899998887777664 6666 3344444322222111 0124678899


Q ss_pred             EecCCeEEEEEecCCcEEEE
Q 019482          296 FCPTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       296 ~~~~~~~l~~~~~dg~i~iw  315 (340)
                      |.++++ ++.++.+|.|.-+
T Consensus       300 ~~~~~~-~~~~G~~G~i~~~  318 (327)
T 2xbg_A          300 FFSPDQ-GFILGQKGILLRY  318 (327)
T ss_dssp             EEETTE-EEEECSTTEEEEE
T ss_pred             EECCCc-eEEEcCCceEEEE
Confidence            986666 5566678865444

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.61  E-value=0.00012  Score=60.75  Aligned_cols=233  Identities=13%  Similarity=0.086  Sum_probs=122.1

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccC-C-----
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV-D-----  133 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~-d-----  133 (340)
                      -.....++|.|+|+++ ++...+.|++++  +++.. .+.... ...........++|+|+   +..|+++.. .     
T Consensus        30 l~~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~-~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~  104 (352)
T 2ism_A           30 LEVPWALAFLPDGGML-IAERPGRIRLFR--EGRLS-TYAELS-VYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR  104 (352)
T ss_dssp             CSCEEEEEECTTSCEE-EEETTTEEEEEE--TTEEE-EEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred             CCCceEEEEcCCCeEE-EEeCCCeEEEEE--CCCcc-Eeecce-EeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence            3467899999999854 456668888888  33321 111111 11123457899999998   555555443 2     


Q ss_pred             CcEEEEeCCCCc-----eeec-cc---cCccceeEEEecCCCCeEEEeeC-------------CCeEEEEEccCC-----
Q 019482          134 GHLRIMHWPSLR-----IILD-EP---KAHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDG-----  186 (340)
Q Consensus       134 g~i~~~d~~~~~-----~~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~-----  186 (340)
                      +.|..++...+.     .+.. +.   ........++|.|||.+.++.+.             .+.|.-++....     
T Consensus       105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            567788876431     1111 22   11113468999999976666432             145555555420     


Q ss_pred             -------eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc-------eEEEEECCC--------C--------cE
Q 019482          187 -------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA-------LLAVYDIST--------W--------NK  236 (340)
Q Consensus       187 -------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~-------~i~i~d~~~--------~--------~~  236 (340)
                             .....+...+ .....++|+|+...++.   .-.+.+.       .|.+.....        +        .+
T Consensus       185 pf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v---~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p  260 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFS---SEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP  260 (352)
T ss_dssp             TTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEE---EEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred             cccCCCCCCccEEEEcC-CCcccEEEECCCCCEEE---EEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence                   0111122122 23678899994333221   2222222       344332211        0        11


Q ss_pred             EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE------eecccccccccceeeEEEecCCeEEEEEec
Q 019482          237 IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI------NHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       237 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                      +..+ ........++| .+|.++++.-..+.|...++.....      ...+. .. ...+..+++.|||.++++...
T Consensus       261 ~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~-~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          261 LYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SG-FGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             SEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ES-SCCEEEEEECTTSCEEEEECS
T ss_pred             eEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-cc-CCCeeEEEECCCCcEEEEEeC
Confidence            1111 11223456677 4666666665667788887764321      11111 11 247899999999987766543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.60  E-value=6.7e-05  Score=61.35  Aligned_cols=205  Identities=7%  Similarity=-0.096  Sum_probs=124.5

Q ss_pred             CeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~d~~  142 (340)
                      .+.+++|++.+..|+ +-...+.|+.+++............      .......+++.+.+. +.++-...+.|.++++.
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~------~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d  109 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD  109 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE------CCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC------CCCCccEEEEEcCCCeEEEEECCCCEEEEEECC
Confidence            467899998655555 4445677888888765321111111      113456788987444 44554566789999987


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      .................+++.|.+..|+.+.  ..+.|...++.. .....+....-.....++++|++..+    ..+.
T Consensus       110 G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~l----Y~aD  184 (318)
T 3sov_A          110 GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKL----YWAD  184 (318)
T ss_dssp             SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEE----EEEE
T ss_pred             CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEE----EEEE
Confidence            5433222223334678999999655555554  257888888753 33333322223457899999987764    3455


Q ss_pred             CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeec
Q 019482          221 GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHW  281 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~  281 (340)
                      ...+.|..+|+..................+++.. +..+.+-...+.|..++..+++....
T Consensus       185 ~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          185 AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEE
Confidence            6778999999875433222222234456677753 34444555678899999877665443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.59  E-value=0.00016  Score=59.19  Aligned_cols=208  Identities=8%  Similarity=-0.075  Sum_probs=124.4

Q ss_pred             CCCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCc---eeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEE
Q 019482           63 EGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLR  137 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~  137 (340)
                      ...+.+++|++.+..|+.+ ..++.|..+++.+.   .....+...      .......+++.+.+..| ++-...+.|.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~------~~~~p~glavd~~~~~ly~~d~~~~~I~  102 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------DIQAPDGLAVDWIHSNIYWTDSVLGTVS  102 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------SCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC------CCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence            4568899999876656554 44578888888751   111111110      11345788998755444 4445678899


Q ss_pred             EEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-C-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      ++++..................++++|.+..|+.+.. . +.|...++. +.....+....-.....+++++++..+   
T Consensus       103 ~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~l---  178 (316)
T 1ijq_A          103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRL---  178 (316)
T ss_dssp             EEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEE---
T ss_pred             EEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEE---
Confidence            9998754332222222346789999996665555443 2 678888875 443333332233467899999987764   


Q ss_pred             EEEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          216 CTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       216 ~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                       ..+....+.|..+|+...........  .......+++. .+..+++-...+.|..++..+++....+
T Consensus       179 -Y~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          179 -YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             -EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             -EEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence             34556678999999975332222221  12345677774 3455555556788999998766544433

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.58  E-value=0.00022  Score=60.42  Aligned_cols=209  Identities=6%  Similarity=-0.087  Sum_probs=126.6

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCce---eeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCcE
Q 019482           62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGA---TDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGHL  136 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i  136 (340)
                      ....+..++|++.+..|+.+. ..+.|+.+++....   ....+..      ........+++.+. +++.++-...+.|
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~------~~~~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC------SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe------CCCCCcccEEEEecCCceEEEECCCCeE
Confidence            356788999998766665554 45778888876522   1111111      12246688999884 4444555567889


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      .+.+++.................++++|.+..|+.+..  .+.|...++..... ..+....-.....+++++++..+| 
T Consensus       184 ~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY-  261 (400)
T 3p5b_L          184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLY-  261 (400)
T ss_dssp             EEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEE-
T ss_pred             EEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEE-
Confidence            99998765443333333345789999996665555442  36788888864333 333222224688999999887643 


Q ss_pred             EEEEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          215 FCTVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                         .+......|..+|+...........  .-.....+++. .+.++++-...+.|..+|..+++....+
T Consensus       262 ---~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          262 ---WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             ---EEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             ---EEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence               4456678899999875443222222  12334566662 3344555556788999997777655444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.56  E-value=0.00024  Score=65.33  Aligned_cols=226  Identities=9%  Similarity=-0.066  Sum_probs=128.8

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCC----ceeeccc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSL----RIILDEP  151 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~----~~~~~~~  151 (340)
                      +|+.+.. ..|+..++.........        .....+..++|.+....|+ +-...+.|+.+++...    .....+.
T Consensus       397 ~Ll~an~-~~Ir~i~l~~~~~~~l~--------~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~  467 (791)
T 3m0c_C          397 YLFFTNR-HEVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  467 (791)
T ss_dssp             EEEEECB-SSEEEECTTSCCCEEEE--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             ccccccc-cceeEeeccCCcceeee--------cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe
Confidence            4444443 34777777654432211        1235678999998555444 4445678888888652    1122222


Q ss_pred             cCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          152 KAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      ........|++.+.++. +++-...+.|.+.++..... ..+..........|++.|.+..+|.   .-.+....|...+
T Consensus       468 ~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYw---tD~g~~~~I~~~~  543 (791)
T 3m0c_C          468 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG  543 (791)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEE---EECSSSCEEEEEE
T ss_pred             cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEE---ecCCCCCeEEEEe
Confidence            23345678999886654 44555678999999875443 3343333345889999998765432   2223347899999


Q ss_pred             CCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       231 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      +............-.....|++++.+..|+.+. ..+.|..+++........+.....-....+|++.. ++++++-...
T Consensus       544 ~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~  622 (791)
T 3m0c_C          544 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  622 (791)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred             cCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCC
Confidence            875544333333335678999998777777664 45679999986644333322111012344666643 3444444444


Q ss_pred             CcEEEEE
Q 019482          310 WGAMITK  316 (340)
Q Consensus       310 g~i~iw~  316 (340)
                      +.|...+
T Consensus       623 ~~I~~~d  629 (791)
T 3m0c_C          623 EAIFSAN  629 (791)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEe
Confidence            5555444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.55  E-value=0.00012  Score=59.94  Aligned_cols=227  Identities=6%  Similarity=-0.028  Sum_probs=130.4

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCCCCceee-ccccCc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIIL-DEPKAH  154 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~-~~~~~~  154 (340)
                      +|+.+.. ..|+..+++..........      .....+..+.|.+....| .+-...+.|..+++....... .....-
T Consensus         6 ~ll~~~~-~~I~~i~l~~~~~~~~~~~------~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l   78 (318)
T 3sov_A            6 LLLYANR-RDLRLVDATNGKENATIVV------GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGL   78 (318)
T ss_dssp             EEEEECE-EEEEEEETTCTTSCCEEEE------EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECC
T ss_pred             EEEEEcc-CeEEEEECCCCceEEEEEe------cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCC
Confidence            3444433 4488888876531111111      011346789999855444 444556789999987653211 122222


Q ss_pred             cceeEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec-CCcceEEEEECC
Q 019482          155 KSVLDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-GDKALLAVYDIS  232 (340)
Q Consensus       155 ~~i~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~  232 (340)
                      .....+++.+. ++++++-...+.|.+++++.... ..+..........+++.|.+..+|    .+. +..+.|...++.
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly----~td~~~~~~I~r~~~d  153 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMY----WTDWGEVPKIERAGMD  153 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEE----EEECSSSCEEEEEETT
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEE----EEecCCCCEEEEEEcC
Confidence            35677889874 44555555678999999864433 333323334678999999766532    222 346788888887


Q ss_pred             CCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482          233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       233 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                      ...........-...+.++++|++..|+.+. ..+.|..+|+......... ... .....++++.. +.++.+-...+.
T Consensus       154 G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~-~~~P~glav~~-~~lywtd~~~~~  230 (318)
T 3sov_A          154 GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGS-LPHPFALTLFE-DILYWTDWSTHS  230 (318)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSC-CSCEEEEEEET-TEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-cCC-CCCceEEEEeC-CEEEEEecCCCe
Confidence            4332222222224568899999777766664 5678999998753322222 112 23456777753 455555555566


Q ss_pred             EEEEEec
Q 019482          312 AMITKLT  318 (340)
Q Consensus       312 i~iw~~~  318 (340)
                      |..++..
T Consensus       231 V~~~~~~  237 (318)
T 3sov_A          231 ILACNKY  237 (318)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            6666653

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.48  E-value=6.6e-06  Score=74.84  Aligned_cols=219  Identities=10%  Similarity=-0.080  Sum_probs=122.8

Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCC----CceeeccccCccceeE
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPS----LRIILDEPKAHKSVLD  159 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~----~~~~~~~~~~~~~i~~  159 (340)
                      ..|+..++.+.......        .....+..++|.+.+..|+.+. ..+.|+.+++..    ......+.........
T Consensus       386 ~~I~~id~~~~~~~~~~--------~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g  457 (699)
T 1n7d_A          386 HEVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  457 (699)
T ss_dssp             TC-CEECTTSCCEECCS--------CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred             cceEEEeCCCCcceeee--------ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence            45777777655432221        1224567889998766666554 457899999875    2222222122234567


Q ss_pred             EEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC-cceEEEEECCCCcEE
Q 019482          160 MDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-KALLAVYDISTWNKI  237 (340)
Q Consensus       160 ~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~  237 (340)
                      |++.+. ++++++-...+.|.++++..... ..+..........++++|.+..+|    ++... .+.|..+++......
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly----~td~~~~~~I~~~~~dG~~~~  532 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMY----WTDWGTPAKIKKGGLNGVDIY  532 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCE----ECCCSSSCCEEBCCSSSCCCC
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEE----EcccCCCCeEEEEeCCCCCee
Confidence            888864 44555545678899999865443 333322224578899999776632    22222 367888777543221


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      ......-...+.|+|+|++..|+.+ ...+.|..+++........+..........+|++..+ .++++....+.|..++
T Consensus       533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          533 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN  611 (699)
T ss_dssp             EESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred             EEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence            1111222345679999976655555 4567899999875433222211111123456666554 5555665667777776


Q ss_pred             e
Q 019482          317 L  317 (340)
Q Consensus       317 ~  317 (340)
                      .
T Consensus       612 ~  612 (699)
T 1n7d_A          612 R  612 (699)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.48  E-value=0.00034  Score=57.50  Aligned_cols=243  Identities=12%  Similarity=0.075  Sum_probs=129.7

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ...+.++.|.+.+..+++ +..+.| +...+.++.-..... ..  ......+.++.|.+ +..++ ++..+.|.. ...
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~-~~--~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~D  106 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTL-VL--DHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTD  106 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCC-CC--SCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESS
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCC-CC--CCCCccEEEEEecC-CeEEE-EECCCeEEE-ECC
Confidence            456899999877777774 456643 333333332111111 00  01234688999986 44444 455665443 222


Q ss_pred             CCceeeccc---cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          143 SLRIILDEP---KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       143 ~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      .++.-....   .....+..+.+.+++..++.+. ++.|.. ..+.++.-..........+..+.+.+++..     ++.
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~-----~~~  179 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEY-----VAV  179 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCE-----EEE
T ss_pred             CCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcE-----EEE
Confidence            233211111   1223567788777776666654 554432 223354444444334456889999998874     334


Q ss_pred             cCCcceEEEEEC--CCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccc--ccccceeeEE
Q 019482          220 RGDKALLAVYDI--STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL--HLGTSIALVE  295 (340)
Q Consensus       220 ~~~d~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~  295 (340)
                      +......+-.|-  .+.+.+.  ......+..+.+.++++.+++ +.+|.+++.+...++.-..+...  .....+..++
T Consensus       180 g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~  256 (327)
T 2xbg_A          180 SSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLA  256 (327)
T ss_dssp             ETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEE
T ss_pred             ECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEE
Confidence            443444444443  3444432  233457888999999876654 46787777643334433322211  1123588899


Q ss_pred             EecCCeEEEEEecCCcEEEEEecCCCCCCC
Q 019482          296 FCPTQRVVLTASKEWGAMITKLTVPADWKG  325 (340)
Q Consensus       296 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~  325 (340)
                      +.+++..++++. +|.+ .+..+....|..
T Consensus       257 ~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~  284 (327)
T 2xbg_A          257 YRTPNEVWLAGG-AGAL-LCSQDGGQTWQQ  284 (327)
T ss_dssp             ESSSSCEEEEES-TTCE-EEESSTTSSCEE
T ss_pred             ecCCCEEEEEeC-CCeE-EEeCCCCcccEE
Confidence            998887766654 5655 344444444443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.46  E-value=0.00011  Score=59.44  Aligned_cols=156  Identities=9%  Similarity=-0.007  Sum_probs=101.6

Q ss_pred             CeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceee-cccc----Cc--cceeEEEe---cCCCCeEEEee---------
Q 019482          114 PQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIIL-DEPK----AH--KSVLDMDF---SLDSEFLATTS---------  173 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~-~~~~----~~--~~i~~~~~---~~~~~~l~~~~---------  173 (340)
                      ...+++|.+....|..+ -..++|..|+...+.... .+..    ..  ..+..+.|   .|+++++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            34578998855455444 478999999987554322 2222    11  14689999   68877777543         


Q ss_pred             ----CCCeEEEEEcc---CCeeEEEeecC------------CCCceeeEEEccCCCcceEEEEEecCCc-ceEEEEECCC
Q 019482          174 ----TDGSARIWKTE---DGVAWTFLTRN------------SDEKIELCRFSKDGTKPFLFCTVQRGDK-ALLAVYDIST  233 (340)
Q Consensus       174 ----~d~~v~iwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~  233 (340)
                          .+..|..+|+.   +++.+......            .......++..++|+.     -++.+.. +.|...+...
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-----YVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-----YVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-----EEEEEESSCEEEEECTTS
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-----EEeCCCCCCeEEEEeCCC
Confidence                25789999998   77776544311            1124789999999985     2334444 6666666654


Q ss_pred             CcEEeeeecc------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          234 WNKIGHKRLL------RKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       234 ~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      ... ..+...      ....+.++++|+|+.|++....|.|..+|+..
T Consensus       169 ~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          169 KTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             CCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            322 222111      12367899999999888887799999999884

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.43  E-value=0.00017  Score=58.77  Aligned_cols=191  Identities=14%  Similarity=0.176  Sum_probs=118.1

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC----CC---eEEEccC---CCcEEEEeCC-
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD----GS---RFAAGGV---DGHLRIMHWP-  142 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~~~d~~-  142 (340)
                      ....++.....+-+.+||+ .++....+.         .+.++.+..-|+    |+   ++++..+   +++|.+|++. 
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp  108 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDG  108 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEEC---------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECT
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEcc---------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECC
Confidence            3446666666777999999 555544442         145566666553    22   2233333   5789999773 


Q ss_pred             -CCceeecccc------Cc-cceeEEEe--cCC-CC-eEEEeeCCCeEEEEEcc-------CCeeEEEeecCCCCceeeE
Q 019482          143 -SLRIILDEPK------AH-KSVLDMDF--SLD-SE-FLATTSTDGSARIWKTE-------DGVAWTFLTRNSDEKIELC  203 (340)
Q Consensus       143 -~~~~~~~~~~------~~-~~i~~~~~--~~~-~~-~l~~~~~d~~v~iwd~~-------~~~~~~~~~~~~~~~v~~~  203 (340)
                       +++ +.....      .. ..+..+++  +|. ++ ++++...+|.+..|++.       +.+.+.++...  ..+..+
T Consensus       109 ~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg--sq~Egc  185 (355)
T 3amr_A          109 KNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN--SQTEGM  185 (355)
T ss_dssp             TTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS--SCEEEE
T ss_pred             CCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC--CCcceE
Confidence             333 322311      11 45667777  774 44 57777888999999983       34556666643  468889


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECC-----CCcEEeeee--ccCCCeeEEEE--CCCCC-EEEEee-CCCcEEEEe
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDIS-----TWNKIGHKR--LLRKPASVLSI--SLDGK-YLAMGS-KDGDICVVD  272 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-----~~~~~~~~~--~~~~~i~~~~~--s~~~~-~l~~~~-~dg~i~i~d  272 (340)
                      ...+....     ++.+-.+.-|..||.+     +++.+....  .....+..|++  .++++ +|++.+ .++...+||
T Consensus       186 vvDd~~g~-----Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          186 AADDEYGR-----LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEETTTTE-----EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             EEcCCCCe-----EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            99987776     6666777667777755     233443332  12246778887  55666 677666 467899999


Q ss_pred             cc-CceEeecc
Q 019482          273 VK-KMEINHWS  282 (340)
Q Consensus       273 ~~-~~~~~~~~  282 (340)
                      .. +.+.+..+
T Consensus       261 r~~~~~~vg~f  271 (355)
T 3amr_A          261 RQGKNKYVADF  271 (355)
T ss_dssp             SSTTCCEEEEE
T ss_pred             CCCCCcEEEEE
Confidence            96 55544443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.40  E-value=0.00058  Score=56.73  Aligned_cols=233  Identities=13%  Similarity=0.050  Sum_probs=124.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccC----C--
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV----D--  133 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~----d--  133 (340)
                      -.....++|.|+|+ |+++..++.|++++. +++  ..+.... ...........|+++|+   +..|+++..    +  
T Consensus        28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~--~~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~  102 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK--KLVASFD-VANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH  102 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCE--EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred             CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc--eEeeccc-eeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence            45688999999997 555566688888873 333  1111110 01113356899999997   445554433    2  


Q ss_pred             --CcEEEEeCCCC-------ceeec-cccC-ccceeEEEecCCCCeEEEeeC-------------CCeEEEEEccCCee-
Q 019482          134 --GHLRIMHWPSL-------RIILD-EPKA-HKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGVA-  188 (340)
Q Consensus       134 --g~i~~~d~~~~-------~~~~~-~~~~-~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~~-  188 (340)
                        ..|..|+....       +.+.. +... ......++|.|||.++++.+.             .+.|.-++.. ++. 
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p  181 (354)
T 3a9g_A          103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPP  181 (354)
T ss_dssp             EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCC
T ss_pred             cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCC
Confidence              56777776543       11111 2111 113467999999987666432             1455555543 220 


Q ss_pred             -------EEEeecCCCCceeeEEEcc-CCCcceEEEEEecCCc--ceEEEEECCC--------C--------cEEeeeec
Q 019482          189 -------WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDK--ALLAVYDIST--------W--------NKIGHKRL  242 (340)
Q Consensus       189 -------~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d--~~i~i~d~~~--------~--------~~~~~~~~  242 (340)
                             ...+...+. ....++|+| ++.. +   +.-.+.+  ..|.+.....        +        .++..+..
T Consensus       182 ~~npf~~~~i~a~G~r-np~Gla~d~~~g~l-~---v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGHR-NPQGIDWHRASGVM-V---ATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             TTSSSTTCCEEEECCS-CCCEEEECTTTCCE-E---EEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCCCcEEEEccC-CcceEEEeCCCCCE-E---EEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence                   112222222 367899999 5552 2   1112222  2343332111        0        11111111


Q ss_pred             cCCCeeEEEEC-------CCCCEEEEeeCCCcEEEEeccCc-eEe--ecccccccccceeeEEEecCCeEEEEEe
Q 019482          243 LRKPASVLSIS-------LDGKYLAMGSKDGDICVVDVKKM-EIN--HWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       243 ~~~~i~~~~~s-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      .......++|.       .+|+++++.-..+.|...++... +..  ..+.... ...+..+++.|||.++++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEe
Confidence            22346777883       46777777666778988888753 221  1221111 34789999999998777664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=2.5e-05  Score=66.82  Aligned_cols=155  Identities=8%  Similarity=0.039  Sum_probs=97.7

Q ss_pred             ceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC----cceEEEEE
Q 019482          156 SVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD----KALLAVYD  230 (340)
Q Consensus       156 ~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----d~~i~i~d  230 (340)
                      ....++++| ++..|..+...+.|+.+|+..++......  .......++|+++++.++    ++...    ...+..++
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~ly----vad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMI----ITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEE----EEECCSCTTSEEEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEE----EEeCCCCcccceEEEEe
Confidence            457889998 45566666555889999988766543332  334588999999998532    23221    22344444


Q ss_pred             CCCCcEE--eeeeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE-EEEE
Q 019482          231 ISTWNKI--GHKRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV-VLTA  306 (340)
Q Consensus       231 ~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~  306 (340)
                      .. +...  ..+.. ......++++| +|.++++-..++.|..++..++.......... ......++|+|+|++ +++-
T Consensus       212 ~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          212 RE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             GG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEE
T ss_pred             CC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEE
Confidence            32 2211  12222 23457788999 67666666677899999998766532221111 235678999999984 4555


Q ss_pred             ecCCcEEEEEecC
Q 019482          307 SKEWGAMITKLTV  319 (340)
Q Consensus       307 ~~dg~i~iw~~~~  319 (340)
                      ...+.|..++.+.
T Consensus       289 ~~~~~I~~~~~d~  301 (430)
T 3tc9_A          289 VNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEEEET
T ss_pred             CCCCEEEEEeCCc
Confidence            5677888887764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.39  E-value=0.0012  Score=60.79  Aligned_cols=205  Identities=6%  Similarity=-0.102  Sum_probs=121.6

Q ss_pred             CCCCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCcee---eeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcE
Q 019482           62 SEGDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGAT---DINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHL  136 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i  136 (340)
                      ....+.+++|++.+..|+.+ ...+.|+.+++.....   ...+...      .......|++.+.+..|+ +-...+.|
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~------~l~~P~GLAvD~~~~~LY~tD~~~~~I  495 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------DIQAPDGLAVDWIHSNIYWTDSVLGTV  495 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS------SCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec------CCCCcceeeeeecCCcEEEEecCCCeE
Confidence            34568899999865555544 4457788888865321   1111110      224557899988765554 44567889


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      .+.++........+.........|+++|.+.+|+.+..  .+.|...++... ....+....-.....|++++.+..+| 
T Consensus       496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LY-  573 (791)
T 3m0c_C          496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLY-  573 (791)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEE-
T ss_pred             EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEE-
Confidence            99998755433323233346789999997655555542  267888888644 33344333334688999998877643 


Q ss_pred             EEEEecCCcceEEEEECCCCcEEeeeecc--CCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEe
Q 019482          215 FCTVQRGDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEIN  279 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~  279 (340)
                         ++-.....|..+|+............  -.....|++.  +..|+.+ ...+.|...|..+++.+
T Consensus       574 ---waD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          574 ---WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             ---EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             ---EEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcce
Confidence               34456678999998755443333321  1233455553  3355544 45677888887666443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.36  E-value=0.00036  Score=56.39  Aligned_cols=211  Identities=10%  Similarity=0.021  Sum_probs=124.5

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE---ecCCCeEEEcc--
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF---SVDGSRFAAGG--  131 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~--  131 (340)
                      .++...--..+++|++....|..++ ..+.|..|+...+...................+..+.|   .|+++++++..  
T Consensus         7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A            7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            3444555577899988666666555 78999999987554322211100000111224589999   68877777533  


Q ss_pred             -----------CCCcEEEEeCC---CCceeeccc--c-----------CccceeEEEecCCCCeEEEeeCC-CeEEEEEc
Q 019482          132 -----------VDGHLRIMHWP---SLRIILDEP--K-----------AHKSVLDMDFSLDSEFLATTSTD-GSARIWKT  183 (340)
Q Consensus       132 -----------~dg~i~~~d~~---~~~~~~~~~--~-----------~~~~i~~~~~~~~~~~l~~~~~d-~~v~iwd~  183 (340)
                                 .+..|..||+.   +++.+....  .           .......++..++|+..++++.. +.|...+.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       25779999998   776553322  1           11247899999999999998887 88777776


Q ss_pred             cCCeeEEEeecCC-----CCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE--Eeeee-cc---CCCeeEE-E
Q 019482          184 EDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK--IGHKR-LL---RKPASVL-S  251 (340)
Q Consensus       184 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~-~~---~~~i~~~-~  251 (340)
                      ... .+..+....     ....+.++++|++..     ++.....+.|..+|+++...  +.... +.   -.....+ .
T Consensus       167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~-----Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp  240 (334)
T 2p9w_A          167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNK-----LIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVT  240 (334)
T ss_dssp             TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTE-----EEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEE
T ss_pred             CCC-EEeeeeecCCCcccccCcceEEEeCCCCE-----EEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccc
Confidence            533 333322111     123668999999986     34443499999999885432  21110 11   1123333 2


Q ss_pred             ECCCCCEEEE-eeCCCcEEEEecc
Q 019482          252 ISLDGKYLAM-GSKDGDICVVDVK  274 (340)
Q Consensus       252 ~s~~~~~l~~-~~~dg~i~i~d~~  274 (340)
                      .-.+|+.+++ ....+.+.+.+..
T Consensus       241 ~~~~G~vllV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          241 VPVGNESVLVGARAPYAISFRSWD  264 (334)
T ss_dssp             EEETTEEEEEEEETTEEEEEECSS
T ss_pred             cccCCEEEEEEcCCCCEEEEECCC
Confidence            2236777444 4445555555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.32  E-value=2e-05  Score=71.65  Aligned_cols=208  Identities=7%  Similarity=-0.083  Sum_probs=121.9

Q ss_pred             CCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCc---eeeeeeccccCCCCCCCCCeEEEEEecCC-CeEEEccCCCcEEE
Q 019482           64 GDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGG---ATDINLLAKKMPPLQDAGPQKCLSFSVDG-SRFAAGGVDGHLRI  138 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~  138 (340)
                      ..+..++|++.+..|+.+. ..+.|+.+++.+.   .....+..      ........|++.+.+ +++++-...+.|.+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~------~~~~~P~glavD~~~g~LY~tD~~~~~I~v  479 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTVSV  479 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC------SCC--CCCEECCCSSSBCEECCTTTSCEEE
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe------CCCCCcceEEEEeeCCcEEEEeccCCeEEE
Confidence            4577899998777666554 4578999888751   11111110      011234568887644 44444455688999


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-C-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-D-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      +++........+.........++++|.+.+|+.+.. . +.|..+++... ....+....-.....++|+|++..+|   
T Consensus       480 ~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY---  555 (699)
T 1n7d_A          480 ADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLY---  555 (699)
T ss_dssp             EBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEE---
T ss_pred             EecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEE---
Confidence            998755433322222345678899996655555442 2 67888777533 22223212223577899999877643   


Q ss_pred             EEecCCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                       ++....+.|..+|+...........  .......+++..+ .++++....+.|..++..+++.+..+.
T Consensus       556 -~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          556 -WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             -EEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             -EEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence             4456678899999875433222211  1122345555443 344455567889999988888776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=0.0012  Score=56.83  Aligned_cols=203  Identities=6%  Similarity=-0.113  Sum_probs=112.1

Q ss_pred             CCeeEEEE-------cCCCCeEEEEecCC-C------EEEEEecC-ceeee----eeccccCCCCCCCCCeEEEEEecC-
Q 019482           64 GDPMTIAV-------NPSGDDFVCSTTNG-G------CKLFEVYG-GATDI----NLLAKKMPPLQDAGPQKCLSFSVD-  123 (340)
Q Consensus        64 ~~v~~~~~-------~~~~~~l~~~~~d~-~------i~iw~~~~-~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~-  123 (340)
                      ..+..++|       +++|+.|+++...+ .      |.+++... +....    ....       .......++++|+ 
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-------~~~~p~giavdp~~  258 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-------AYKQCNGATIHPIN  258 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-------EESCCCCEEECTTT
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-------cCCCceEEEEcCCC
Confidence            35899999       99999777666554 2      55555333 12110    1111       1123457788994 


Q ss_pred             CCeEEEccCCCcEEEEeCC-------CCce-----------eecc--ccCccceeEEEecCCCCeEEEe-eCCCeEEEEE
Q 019482          124 GSRFAAGGVDGHLRIMHWP-------SLRI-----------ILDE--PKAHKSVLDMDFSLDSEFLATT-STDGSARIWK  182 (340)
Q Consensus       124 ~~~l~~~~~dg~i~~~d~~-------~~~~-----------~~~~--~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd  182 (340)
                      +.++++-..++.|..+|+.       ++..           ...+  .........++|+|++++|..+ +..+.|+.++
T Consensus       259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid  338 (496)
T 3kya_A          259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD  338 (496)
T ss_dssp             CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence            5555566677889999987       4443           0011  1122345789999999964444 4567888866


Q ss_pred             ccC--Cee--EEEeecC--CC------------Ccee-eEEEc-------cCCCcceEEEEEecCCcceEEEEECCCCcE
Q 019482          183 TED--GVA--WTFLTRN--SD------------EKIE-LCRFS-------KDGTKPFLFCTVQRGDKALLAVYDISTWNK  236 (340)
Q Consensus       183 ~~~--~~~--~~~~~~~--~~------------~~v~-~~~~~-------~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  236 (340)
                      ...  +..  ...+.+.  ..            .... .+...       +++..     .++-.....|+.++ .++..
T Consensus       339 ~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~l-----yVaD~~N~rIr~i~-~~G~v  412 (496)
T 3kya_A          339 YDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDF-----YFVDRLNFCVRKVT-PEGIV  412 (496)
T ss_dssp             EETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEE-----EEEEGGGTEEEEEC-TTCBE
T ss_pred             cCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeE-----EEEECCCCEEEEEe-CCCCE
Confidence            543  221  1222211  00            1233 33343       23332     35556678889888 34533


Q ss_pred             Eeeeecc------------------------CCCeeEEEECCC-CCEEEEeeCCCcEEEEeccCceEee
Q 019482          237 IGHKRLL------------------------RKPASVLSISLD-GKYLAMGSKDGDICVVDVKKMEINH  280 (340)
Q Consensus       237 ~~~~~~~------------------------~~~i~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~  280 (340)
                       ..+.+.                        -.....++++++ |.++++=..+..|+.+++.......
T Consensus       413 -~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          413 -STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             -EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             -EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence             333221                        023467888886 6555555567788888887655443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.25  E-value=0.0016  Score=55.65  Aligned_cols=196  Identities=10%  Similarity=0.074  Sum_probs=115.2

Q ss_pred             CCeEEEEEecC--CCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC---C-eEEEEEccCC
Q 019482          113 GPQKCLSFSVD--GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD---G-SARIWKTEDG  186 (340)
Q Consensus       113 ~~v~~~~~~~~--~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~-~v~iwd~~~~  186 (340)
                      .....++|+|+  ...|+.+...+.|+.+|..+++... +.........++++++++++++....   . .+...+...+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            34678999985  3445555444889999987766543 33334468899999999944443311   1 2333333222


Q ss_pred             ee-EEEeecCCCCceeeEEEcc-CCCcceEEEEEecCCcceEEEEECCCCcEEeee-ecc-CCCeeEEEECCCCCEEEEe
Q 019482          187 VA-WTFLTRNSDEKIELCRFSK-DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK-RLL-RKPASVLSISLDGKYLAMG  262 (340)
Q Consensus       187 ~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~-~~~i~~~~~s~~~~~l~~~  262 (340)
                      .. ...+.  .......++++| ++..     .++...++.|+.+|..++.....+ ... ...-..++|+|++++|+.+
T Consensus       218 ~~~~~~~~--~~~~P~giavd~~~G~l-----yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          218 FTERLSLC--NARGAKTCAVHPQNGKI-----YYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TCCEEEEE--ECSSBCCCEECTTTCCE-----EECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred             eecccccc--ccCCCCEEEEeCCCCeE-----EEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence            11 01121  123467789999 5552     345556789999999877652222 211 1223469999999966555


Q ss_pred             -eCCCcEEEEeccC--ceEe--ecccc-----cc--------cccceeeEEE---------ecCCeEEEEEecCCcEEEE
Q 019482          263 -SKDGDICVVDVKK--MEIN--HWSKR-----LH--------LGTSIALVEF---------CPTQRVVLTASKEWGAMIT  315 (340)
Q Consensus       263 -~~dg~i~i~d~~~--~~~~--~~~~~-----~~--------~~~~i~~~~~---------~~~~~~l~~~~~dg~i~iw  315 (340)
                       ...+.|+.+++..  +...  ..+..     +.        .-.....+++         .++|.++++-...+.|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence             4567899988652  2211  00000     00        0123567899         6777777776667777776


Q ss_pred             E
Q 019482          316 K  316 (340)
Q Consensus       316 ~  316 (340)
                      +
T Consensus       371 ~  371 (433)
T 4hw6_A          371 T  371 (433)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.24  E-value=0.00034  Score=57.67  Aligned_cols=202  Identities=12%  Similarity=0.082  Sum_probs=114.0

Q ss_pred             CCeeEEEEcCCCCeEEEE------------ecCCCEEEEEecCcee-eeeeccccCCCCCCCCCeEEEEEec--CCC-eE
Q 019482           64 GDPMTIAVNPSGDDFVCS------------TTNGGCKLFEVYGGAT-DINLLAKKMPPLQDAGPQKCLSFSV--DGS-RF  127 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~------------~~d~~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~l  127 (340)
                      ...-.+...|+|..++++            ..+|.|.++|+++... ...+.......-...-....+.+.+  ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            346677788888655554            2688899999874321 1122111100111224567788766  454 34


Q ss_pred             EEc-cC--CCcEEEEeCCCCce----eeccccC-ccceeEEEecCCCCeEEEeeC-----------------CCeEEEEE
Q 019482          128 AAG-GV--DGHLRIMHWPSLRI----ILDEPKA-HKSVLDMDFSLDSEFLATTST-----------------DGSARIWK  182 (340)
Q Consensus       128 ~~~-~~--dg~i~~~d~~~~~~----~~~~~~~-~~~i~~~~~~~~~~~l~~~~~-----------------d~~v~iwd  182 (340)
                      +++ ..  +..|.+|+++....    +..+.+. -...+++.+.++|.+.++...                 .|.|.-+|
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            443 22  46788887764321    1122211 135789999999987777541                 24455555


Q ss_pred             ccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC-CcE--EeeeeccCCCeeEEEECC-CCCE
Q 019482          183 TEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST-WNK--IGHKRLLRKPASVLSISL-DGKY  258 (340)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~  258 (340)
                      .  ++.. .+.... ...+.++|+||++.+    .++.+..+.|..||+.. ++.  ...+ ........+++.+ +|++
T Consensus       210 ~--~~~~-~~~~~l-~~pNGia~spDg~~l----Yvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          210 P--NDVR-VVAEGF-DFANGINISPDGKYV----YIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             T--TCCE-EEEEEE-SSEEEEEECTTSSEE----EEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred             C--CeEE-EeecCC-cccCcceECCCCCEE----EEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence            4  3322 222222 357899999999874    34555678899999863 322  1223 2245567789999 5988


Q ss_pred             EEEeeCC-CcEEEEecc
Q 019482          259 LAMGSKD-GDICVVDVK  274 (340)
Q Consensus       259 l~~~~~d-g~i~i~d~~  274 (340)
                      .+++..+ +.|..|+..
T Consensus       281 wva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          281 WVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEESCHHHHHSCCTT
T ss_pred             EEEecCCceEEEEECCC
Confidence            7766533 344444443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.19  E-value=0.0011  Score=59.51  Aligned_cols=204  Identities=9%  Similarity=-0.064  Sum_probs=119.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEec-CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEe
Q 019482           63 EGDPMTIAVNPSGDDFVCSTT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMH  140 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d  140 (340)
                      -..+.+++|++.+..|+.+.. .+.|+.++++.......+...      .......+++.+.+..|+ +-...+.|.+.+
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~------~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~  112 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS------GLLSPDGLACDWLGEKLYWTDSETNRIEVSN  112 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECS------SCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeC------CCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence            345789999997776665544 567888887654321122111      224678999999655554 445678899999


Q ss_pred             CCCCceeeccccCccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          141 WPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      +............-.....+++.|.+..|..+..  .+.|...++. |.....+....-.....+++++++..+|    .
T Consensus       113 ~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~Glald~~~~~LY----~  187 (619)
T 3s94_A          113 LDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGLTLDYEEQKLY----W  187 (619)
T ss_dssp             TTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEEEEEETTTTEEE----E
T ss_pred             CCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcEEEEEccCCEEE----E
Confidence            8754332222233345788999997555555543  3567777765 3333333322334678999999877643    4


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  278 (340)
                      +....+.|..+|+..................+++..+ ...++-...+.|...|..+++.
T Consensus       188 aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          188 ADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred             EeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence            4566778999998764432222212223346777655 3444444567899999877654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.13  E-value=0.0042  Score=55.67  Aligned_cols=221  Identities=7%  Similarity=-0.040  Sum_probs=123.5

Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCce-eeccccCccceeEEEe
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRI-ILDEPKAHKSVLDMDF  162 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~-~~~~~~~~~~i~~~~~  162 (340)
                      ..|+..++..........      ......+..++|++.+..|+.+. ..+.|..+++..... ...+...-.....+++
T Consensus        18 ~~I~~i~~~~~~~~~~~~------~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv   91 (619)
T 3s94_A           18 RDLRLVDATNGKENATIV------VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC   91 (619)
T ss_dssp             SBEEEECCC---------------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred             ccEEEEeCCCCcceEEEE------EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence            447777776542111111      12335678999999666665544 457788888875432 1222222246789999


Q ss_pred             cCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          163 SLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       163 ~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      .+.+.. +++-...+.|.+.++.... ...+....-.....+++.|.+..+|.   .--+....|...++..........
T Consensus        92 D~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~---tD~g~~~~I~r~~~dG~~~~~l~~  167 (619)
T 3s94_A           92 DWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYW---TDWGEVPKIERAGMDGSSRFIIIN  167 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEE---EECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEE---eccCCCCEEEEEECCCCceEEEEe
Confidence            985554 4555567899999987543 33333233345789999998665332   111334677777776443322222


Q ss_pred             ccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          242 LLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ..-.....++++++++.|+.+. ..+.|..+|+.......... .. .....++++..+ ..+.+-...+.|...+..
T Consensus       168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-~~-~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-GS-LPHPFALTLFED-ILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred             CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe-CC-CCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence            2334678899999776666664 46789999987654433322 11 123467777665 444554455666666553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.13  E-value=0.0025  Score=52.91  Aligned_cols=246  Identities=11%  Similarity=0.069  Sum_probs=126.8

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEccC--------
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV--------  132 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~--------  132 (340)
                      .....++|.|+|+.|+++...|.|++++.. +.....+................++|+|+   +..|+....        
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            457899999999845556677888888753 22211111110011123456789999995   445544422        


Q ss_pred             CCcEEEEeCCCC-------ceee-cccc---CccceeEEEecCCCCeEEEeeC-------------CCeEEEEEccCCe-
Q 019482          133 DGHLRIMHWPSL-------RIIL-DEPK---AHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGV-  187 (340)
Q Consensus       133 dg~i~~~d~~~~-------~~~~-~~~~---~~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~-  187 (340)
                      ...|..+++...       +.+. .+..   .......++|.|||.+.++.+.             .+.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            234666666432       1111 1111   1112467999999976665433             2456666654220 


Q ss_pred             -----------eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc--ceEEEEECCCCc-------------------
Q 019482          188 -----------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK--ALLAVYDISTWN-------------------  235 (340)
Q Consensus       188 -----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~-------------------  235 (340)
                                 ....+...+ .....++|+|+...++.   .-.+.+  ..|.+  +..+.                   
T Consensus       177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~---~d~g~~~~dei~~--i~~G~nyGwp~~~~~~~~~~~~~~  250 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWL---NEHGPRGGDEINI--PQKGKNYGWPLATWGINYSGFKIP  250 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEE---EEECSBSCEEEEC--CCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred             CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEE---EecCCCCCcEEeE--eccCCcCCCCCccCCCCCCCCccC
Confidence                       111222222 23778999994333221   111222  12222  11111                   


Q ss_pred             ------------EEeeeeccCCCeeEEEECC-------CCCEEEEeeCCCcEEEEeccCceEeecccc-cccccceeeEE
Q 019482          236 ------------KIGHKRLLRKPASVLSISL-------DGKYLAMGSKDGDICVVDVKKMEINHWSKR-LHLGTSIALVE  295 (340)
Q Consensus       236 ------------~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~i~~~~  295 (340)
                                  ++..+. +......+.|..       +|+++++.-..+.|...++..++....... ......+..++
T Consensus       251 ~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          251 EAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR  329 (353)
T ss_dssp             TCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred             cccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence                        001111 112455677753       466777666778888888876543322110 11134789999


Q ss_pred             EecCCeEEEEEecCCcEEEEEec
Q 019482          296 FCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       296 ~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      +.|||.++++.. +..=+||.+.
T Consensus       330 ~~pdG~lyv~td-~~~g~I~ri~  351 (353)
T 2g8s_A          330 TGPDGYLYVLTD-ESSGELLKVS  351 (353)
T ss_dssp             ECTTSCEEEEEC-STTEEEEEEE
T ss_pred             ECCCCcEEEEEe-CCCCEEEEEe
Confidence            999998666543 2233567664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.12  E-value=0.0012  Score=54.48  Aligned_cols=185  Identities=12%  Similarity=0.098  Sum_probs=106.8

Q ss_pred             CeEEEEEecCCCeEEEc------------cCCCcEEEEeCCCC--ce-eeccccC-----ccceeEEEecC--CCC-eEE
Q 019482          114 PQKCLSFSVDGSRFAAG------------GVDGHLRIMHWPSL--RI-ILDEPKA-----HKSVLDMDFSL--DSE-FLA  170 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~------------~~dg~i~~~d~~~~--~~-~~~~~~~-----~~~i~~~~~~~--~~~-~l~  170 (340)
                      ...++...|+|..++++            ..+|.|.++|+.+.  +. ...+.+.     .-....+.+.+  ++. +|+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34556667776444443            26899999998742  21 1122221     12456677655  453 344


Q ss_pred             Ee-eC--CCeEEEEEccCCee----EEEeecCCCCceeeEEEccCCCcceEEEEEecC-----------------CcceE
Q 019482          171 TT-ST--DGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG-----------------DKALL  226 (340)
Q Consensus       171 ~~-~~--d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----------------~d~~i  226 (340)
                      .+ ..  +.++.+|+++....    +..+....-...+.+.+.++|..     .++..                 ..+.+
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-----yvt~~~~ftd~~~~~~e~~~~~~~g~v  205 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-----YATNDHYFIDPYLKSWEMHLGLAWSFV  205 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-----EEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-----EecCCcEeCCcccccchhhccCCccEE
Confidence            44 32  56788888765322    22333333346789999999873     12211                 23556


Q ss_pred             EEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccC-ceE--eecccccccccceeeEEEec-CCe
Q 019482          227 AVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKK-MEI--NHWSKRLHLGTSIALVEFCP-TQR  301 (340)
Q Consensus       227 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~~~i~~~~~~~-~~~  301 (340)
                      ..+|..  +. ......-...+.++|+||++.|+++. ..+.|..|++.. ++.  .+.+   ........+++.+ +|+
T Consensus       206 yr~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~---~~~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          206 TYYSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL---SFDTLVDNISVDPVTGD  279 (355)
T ss_dssp             EEECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE---ECSSEEEEEEECTTTCC
T ss_pred             EEEECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE---eCCCCCceEEEeCCCCc
Confidence            666653  22 22222223568899999998887765 467899999863 322  1122   1135678899999 598


Q ss_pred             EEEEEecC
Q 019482          302 VVLTASKE  309 (340)
Q Consensus       302 ~l~~~~~d  309 (340)
                      +.+++..+
T Consensus       280 lwva~~~~  287 (355)
T 3sre_A          280 LWVGCHPN  287 (355)
T ss_dssp             EEEEEESC
T ss_pred             EEEEecCC
Confidence            87766544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.02  E-value=0.0016  Score=54.11  Aligned_cols=191  Identities=13%  Similarity=0.046  Sum_probs=93.7

Q ss_pred             CCCeeEEEEcCC---CCeEEEEec-C-----CCEEEEEecCcee--eeeeccccC--CCCCCCCCeEEEEEecCCCeEEE
Q 019482           63 EGDPMTIAVNPS---GDDFVCSTT-N-----GGCKLFEVYGGAT--DINLLAKKM--PPLQDAGPQKCLSFSVDGSRFAA  129 (340)
Q Consensus        63 ~~~v~~~~~~~~---~~~l~~~~~-d-----~~i~iw~~~~~~~--~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~  129 (340)
                      ......++|+|+   +..|+.+.. .     ..|..++......  ...+.....  ....|  ....++|.|||.+.++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~  151 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLH--SGGRIAFGPDGMLYVT  151 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCC--CCCCEEECTTSCEEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCc--CCceEEECCCCCEEEE
Confidence            456899999998   555554433 2     5577787764321  111111000  01112  2368999999976665


Q ss_pred             ccC-------------CCcEEEEeCCCC------------ceeeccccCccceeEEEecC-CCCeEEEeeCCCeE-----
Q 019482          130 GGV-------------DGHLRIMHWPSL------------RIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSA-----  178 (340)
Q Consensus       130 ~~~-------------dg~i~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v-----  178 (340)
                      .+.             .|.|.-++....            .....+.........++|+| +++++++-.....+     
T Consensus       152 ~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~  231 (352)
T 2ism_A          152 TGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGH  231 (352)
T ss_dssp             CCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CC
T ss_pred             ECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCC
Confidence            432             245665664420            00111111223467899999 56654443322221     


Q ss_pred             -EEEEccCCe------------------eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE---
Q 019482          179 -RIWKTEDGV------------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK---  236 (340)
Q Consensus       179 -~iwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---  236 (340)
                       .+.-+..+.                  ++..+  ........++| .+|..     ++.....+.|...++.....   
T Consensus       232 dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~--~~~~ap~G~~~-~~G~l-----~v~~~~~~~v~~v~~~~~~~~~~  303 (352)
T 2ism_A          232 DEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW--PQGFPPGNLAF-FRGDL-----YVAGLRGQALLRLVLEGERGRWR  303 (352)
T ss_dssp             CEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC--TTCCCEEEEEE-ETTEE-----EEEETTTTEEEEEEEEEETTEEE
T ss_pred             eEEEEeccCCcCCCCcccCCCCCCCCcCCeEec--CCCCCCcceEE-ECCEE-----EEEECCCCEEEEEEECCCCccee
Confidence             122222222                  11111  11123456666 34442     34444556777776654321   


Q ss_pred             ---EeeeeccCCCeeEEEECCCCCEEEEee
Q 019482          237 ---IGHKRLLRKPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       237 ---~~~~~~~~~~i~~~~~s~~~~~l~~~~  263 (340)
                         ...+......+..+++.|||.+.++..
T Consensus       304 ~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          304 VLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             ecchheecccCCCeeEEEECCCCcEEEEEe
Confidence               112212235678899999997666653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.00  E-value=0.0027  Score=51.28  Aligned_cols=188  Identities=12%  Similarity=0.016  Sum_probs=93.4

Q ss_pred             CCCeEEEEecC-----CCEEEEEecCce---eeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEe
Q 019482           74 SGDDFVCSTTN-----GGCKLFEVYGGA---TDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMH  140 (340)
Q Consensus        74 ~~~~l~~~~~d-----~~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d  140 (340)
                      ++..++.|+.+     ..+.+||+.+.+   ....  .. .   .....-.++.. .+++.++.|+.+     ..+.+||
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~--~~-~---p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d  134 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSV--AP-M---NVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYD  134 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEE--CC-C---SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEEC--CC-C---CCCccceeEEE-ECCEEEEEcccCCCcccceEEEEc
Confidence            56677777754     368889887665   2211  11 1   11111112222 266677777644     3588899


Q ss_pred             CCCCceee--ccccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          141 WPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       141 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      +.+.+-..  ...........+.  .++++++.|+.+     ..+.+||+.+.+-...-.......-.++.. -+++.  
T Consensus       135 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i--  209 (301)
T 2vpj_A          135 PNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHI--  209 (301)
T ss_dssp             TTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE--
T ss_pred             CCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEE--
Confidence            87765322  1211111112222  267777777754     468899987764332211111111112222 23332  


Q ss_pred             EEEEEecCC-----cceEEEEECCCCcEE--eeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceE
Q 019482          214 LFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI  278 (340)
Q Consensus       214 ~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~  278 (340)
                         .+.++.     ...+.+||+.+.+-.  ..+.........+.  -+++.++.|+.+     ..+.+||+++.+-
T Consensus       210 ---~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  281 (301)
T 2vpj_A          210 ---YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSW  281 (301)
T ss_dssp             ---EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred             ---EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence               334443     356899999876532  21111111122222  266777777765     3577888876553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.99  E-value=0.0081  Score=53.94  Aligned_cols=224  Identities=8%  Similarity=-0.046  Sum_probs=133.9

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEE-ccCCCcEEEEeCCCCceeeccccCcc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAA-GGVDGHLRIMHWPSLRIILDEPKAHK  155 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~  155 (340)
                      +|+.+. ...|+..++++......+      ++..-..+..++|++....|+. -..++.|..+++..............
T Consensus         8 ~Ll~s~-~~~I~~i~l~~~~~~~~~------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            8 FLLFSR-RADIRRISLETNNNNVAI------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             EEEEEE-TTEEEEEESSCTTCEEEC------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS
T ss_pred             EEEEEe-CCcEEEEECCCCCcceEE------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCC
Confidence            444443 455888888765422111      1122346789999996665554 44578899998875433322222223


Q ss_pred             ceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec-CCcceEEEEECCC
Q 019482          156 SVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-GDKALLAVYDIST  233 (340)
Q Consensus       156 ~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~  233 (340)
                      ....+++.+.+..| ++-...+.|.+.++..... ..+....-.....+++.|....+|    .+. +....|...++..
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY----~tD~g~~~~I~r~~~dG  155 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMY----WTEWGGKPKIDRAAMDG  155 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEE----EEECSSSCEEEEEETTS
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEE----EeCCCCCCEEEEEeCCC
Confidence            56788898755544 4545567899999865433 333222334578999999766532    222 3367888888875


Q ss_pred             CcEEeeeeccCCCeeEEEECCCCCEEEEee-CCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcE
Q 019482          234 WNKIGHKRLLRKPASVLSISLDGKYLAMGS-KDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGA  312 (340)
Q Consensus       234 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  312 (340)
                      ....... ..-.....++++++++.|+.+. ..+.|..+|+..... ..+. .. .....++++.. +.++.+-...+.|
T Consensus       156 ~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~-l~~P~glav~~-~~ly~tD~~~~~I  230 (628)
T 4a0p_A          156 SERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIA-DD-LPHPFGLTQYQ-DYIYWTDWSRRSI  230 (628)
T ss_dssp             CSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEE-EC-CSCEEEEEEET-TEEEEEETTTTEE
T ss_pred             CceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEee-cc-CCCceEEEEEC-CEEEEecCCCCEE
Confidence            5433222 2345678899999877776664 467899999876443 2221 12 23456777765 4555555456666


Q ss_pred             EEEEe
Q 019482          313 MITKL  317 (340)
Q Consensus       313 ~iw~~  317 (340)
                      ...+.
T Consensus       231 ~~~dk  235 (628)
T 4a0p_A          231 ERANK  235 (628)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            65553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.97  E-value=0.0044  Score=50.04  Aligned_cols=218  Identities=9%  Similarity=-0.016  Sum_probs=106.5

Q ss_pred             CCCeEEEEe-cC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCC
Q 019482           74 SGDDFVCST-TN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWP  142 (340)
Q Consensus        74 ~~~~l~~~~-~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~  142 (340)
                      ++..++.|+ .+     ..+.+||+.+.+..... .  .   +....-.++. ..+++.++.|+.+     ..+.+||+.
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~--~---p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~   86 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP-S--I---TRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYT   86 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECC-C--C---SSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC-C--C---ChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECC
Confidence            344555565 22     36888888776543211 1  1   1111111222 2356677777754     468999988


Q ss_pred             CCc---ee--eccccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482          143 SLR---II--LDEPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       143 ~~~---~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (340)
                      +.+   -.  ............+.+  +++.++.|+.+     ..+.+||+.+.+-...-.......-.++.. -+++. 
T Consensus        87 ~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i-  162 (301)
T 2vpj_A           87 ADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVI-  162 (301)
T ss_dssp             CCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEE-
T ss_pred             CCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEE-
Confidence            765   22  222211112222222  57777777644     368899987765322211111111112222 24432 


Q ss_pred             eEEEEEecCC-----cceEEEEECCCCcEE--eeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEee
Q 019482          213 FLFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINH  280 (340)
Q Consensus       213 ~~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~  280 (340)
                          .+.++.     ...+.+||+.+.+-.  ..+.........+.  -+++.++.|+.+     ..+.+||+.+.+-..
T Consensus       163 ----yv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          163 ----YCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             ----EEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             ----EEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence                333433     256889998776422  11111111112222  256777777664     468999998876443


Q ss_pred             cccccccccceeeEEEecCCeEEEEEecCC
Q 019482          281 WSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       281 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      ...... . .....+..-++++++.|+.++
T Consensus       237 ~~~~p~-~-r~~~~~~~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          237 VTSMTT-P-RCYVGATVLRGRLYAIAGYDG  264 (301)
T ss_dssp             ECCCSS-C-CBSCEEEEETTEEEEECCBCS
T ss_pred             CCCCCC-c-ccceeEEEECCEEEEEcCcCC
Confidence            221111 1 111122233778888887663

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.96  E-value=0.0031  Score=50.94  Aligned_cols=178  Identities=8%  Similarity=0.003  Sum_probs=103.1

Q ss_pred             EEEecCCCeEEEccCC--------------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEee--CCC--eEE
Q 019482          118 LSFSVDGSRFAAGGVD--------------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDG--SAR  179 (340)
Q Consensus       118 ~~~~~~~~~l~~~~~d--------------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~--~v~  179 (340)
                      --+++++++|+.+...              ..|+..++...+... +...    ....|+++++.|+-..  .++  .|+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD----PCIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS----CEEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC----CccEEEEeCCEEEEEeecCCCCceEE
Confidence            4567888888776543              357777776654322 2211    1236788888888765  334  455


Q ss_pred             EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEE
Q 019482          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL  259 (340)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  259 (340)
                      .-++. +.....+....   +  ..++++++.++    .+.....+|...++..+.......   +... ..++|++++|
T Consensus       133 ~~~~d-Gs~~~~lt~~~---~--~~~~~~g~~iy----~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~i  198 (302)
T 3s25_A          133 RIRID-GEEKKKIKNHY---L--FTCNTSDRYFY----YNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNV  198 (302)
T ss_dssp             EEETT-SCCCEEEESSC---C--CCSEEETTEEE----EECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEE
T ss_pred             EEECC-CCCeEEEeCCC---c--eEeeEECCEEE----EEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEE
Confidence            55554 33334444222   2  45688888742    333457789999988765433322   2332 2356999998


Q ss_pred             EEeeCC--CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          260 AMGSKD--GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       260 ~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      +-...+  ..|..-++.........     ...+  ..|+|++.+|.-++..+.-.|+.+....
T Consensus       199 y~t~~~~~~~I~~~~ldG~~~~~Lt-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG  255 (302)
T 3s25_A          199 YYMDVNRDNAIVHVNINNPNPVVLT-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDG  255 (302)
T ss_dssp             EEEEGGGTTEEEEECSSSCCCEECS-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred             EEEEcCCCcEEEEEECCCCCeEEEe-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence            876543  35777777665543322     1233  3478888888766443335666666554

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.86  E-value=0.0089  Score=50.06  Aligned_cols=238  Identities=11%  Similarity=0.095  Sum_probs=144.1

Q ss_pred             EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-e
Q 019482           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-I  146 (340)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~  146 (340)
                      +.-.+|..+.+|.-. ...++|+|+++........-        ...|.--.|-.+. .|+..+ +..|+-|+++... +
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~--------~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P  138 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM--------TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP  138 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC--------SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec--------CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCc
Confidence            455788888777655 56799999998876655432        2345555665443 455444 4679999997543 3


Q ss_pred             eeccccCc----cceeEEEecCCCCeEEEee-------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          147 ILDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       147 ~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      ...+..|.    ..|.....+++.++++..+       -.|.+.+|..+.+.. +.+. +|.+....+....+..-..++
T Consensus       139 ~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie-Ghaa~F~~~~~~g~~~~~~lf  216 (494)
T 1bpo_A          139 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE-GHAASFAQFKMEGNAEESTLF  216 (494)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEEC-CSEEEEEEEECTTCSSEEEEE
T ss_pred             hhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhe-eeeeeeEEEecCCCCCCceEE
Confidence            33333332    2688888899999876543       247889999875432 3333 343333333332222222233


Q ss_pred             EEEecC-CcceEEEEECCCC---cE-----Eee-eecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          216 CTVQRG-DKALLAVYDISTW---NK-----IGH-KRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       216 ~~~~~~-~d~~i~i~d~~~~---~~-----~~~-~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      |++.-. ..+.+++.++...   .+     ... +...   ..-..++..++.-..++..+.-|.|++||+.++.++..-
T Consensus       217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n  296 (494)
T 1bpo_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (494)
T ss_dssp             EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence            333322 3478999998543   11     111 1111   122456788888889999999999999999999988754


Q ss_pred             cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       283 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      . .. ..+|-..+-+....-++.....|.|.--.++..
T Consensus       297 r-Is-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          297 R-IS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             E-CC-SSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             c-cc-CCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            3 22 345655555555455666667787766666543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.86  E-value=0.013  Score=56.49  Aligned_cols=175  Identities=11%  Similarity=0.185  Sum_probs=104.5

Q ss_pred             cEEEEeCCCCceeecccc-CccceeEEE---ecCC-CCeEEEee----------CCCeEEEEEccCCeeEEEeecCCCCc
Q 019482          135 HLRIMHWPSLRIILDEPK-AHKSVLDMD---FSLD-SEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEK  199 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~-~~~~i~~~~---~~~~-~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~  199 (340)
                      .|++.|..+.+.+..+.- ..+.+.+++   |..+ ..+++.|.          ..|.|++|++..++.........+++
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~  887 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA  887 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence            366677666665433322 223444444   4332 46788776          34789999998665544444445677


Q ss_pred             eeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc--Cce
Q 019482          200 IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK--KME  277 (340)
Q Consensus       200 v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~  277 (340)
                      +++++-- +|.      +++ +....+++|++...+.+......-..+..+.....++++++|..-..+.++..+  ..+
T Consensus       888 v~al~~~-~g~------Lla-~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~  959 (1158)
T 3ei3_A          888 VYSMVEF-NGK------LLA-SINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGN  959 (1158)
T ss_dssp             EEEEEEE-TTE------EEE-EETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTE
T ss_pred             CEEEeee-CCE------EEE-EcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCe
Confidence            8887644 343      222 235789999998765443111111123333443467899999887778776544  344


Q ss_pred             EeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          278 INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       278 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ......... ...++++.|-.++ .++.+..+|.+.+...+.
T Consensus       960 L~~~a~D~~-~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          960 FEEIARDFN-PNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEEEECCS-CBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             EEEEEeecc-cccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            433322222 4578888887665 677788999999998865

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.79  E-value=0.019  Score=51.57  Aligned_cols=199  Identities=8%  Similarity=-0.082  Sum_probs=122.1

Q ss_pred             CCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeC
Q 019482           64 GDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHW  141 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~  141 (340)
                      ..+.+++|++.+..|+.+ ..++.|+.++++..........       ....+..+++.+.+..| ++-...+.|.+.++
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~-------g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~  109 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF-------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL  109 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-------SCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC-------CCCCcceEEEEeCCCEEEEEECCCCEEEEEec
Confidence            468899999976666554 4567888888765433222211       11346788888765545 44455678999998


Q ss_pred             CCCceeeccccCccceeEEEecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          142 PSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      ............-.....++++|....|..+.  ..+.|...++..... ..+.. .-.....+++++++..+    ..+
T Consensus       110 dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~-~~~~P~GlalD~~~~~L----Y~a  183 (628)
T 4a0p_A          110 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP-NVGRANGLTIDYAKRRL----YWT  183 (628)
T ss_dssp             TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-SCSSEEEEEEETTTTEE----EEE
T ss_pred             CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC-CCCCcceEEEccccCEE----EEE
Confidence            65433222223334678999999555555544  246788888764433 33332 23468899999987764    345


Q ss_pred             cCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          220 RGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       220 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      ....+.|..+|+..... ..+.........+++.. +..+++-...+.|...|..+++
T Consensus       184 D~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          184 DLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             ETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence            56678899999876543 22333333445677754 3344444457788888876554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.77  E-value=0.01  Score=47.95  Aligned_cols=189  Identities=15%  Similarity=0.126  Sum_probs=93.2

Q ss_pred             CCCeEEEEecC-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC-----cEEEEeCCC
Q 019482           74 SGDDFVCSTTN-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG-----HLRIMHWPS  143 (340)
Q Consensus        74 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~  143 (340)
                      ++..++.|+.+     ..+.+||..+.+..... .  .   +....-.+++. .+++.++.|+.++     .+.+||+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~--~---p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA-N--M---RDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKS  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC-C--C---SSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCC-C--C---CccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCC
Confidence            56677777754     35888888776543221 1  1   11111112222 2566677776543     578889877


Q ss_pred             Cceeec--cccCccceeEEEecCCCCeEEEeeCC-------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          144 LRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       144 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      .+-...  ..........+.  -++++++.|+.+       ..+.+||+.+.+-...-.......-.++.. -+++.   
T Consensus       134 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i---  207 (302)
T 2xn4_A          134 NEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLL---  207 (302)
T ss_dssp             TEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEE---
T ss_pred             CeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEE---
Confidence            653321  111111112222  256777777642       358899987764322211111111112222 23332   


Q ss_pred             EEEEecCCc-----ceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-----cEEEEeccCceEe
Q 019482          215 FCTVQRGDK-----ALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEIN  279 (340)
Q Consensus       215 ~~~~~~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~  279 (340)
                        .+.++.+     ..+.+||+.+.+-  +..+.........+.  .+++.++.|+.++     .+.+||+.+.+-.
T Consensus       208 --yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          208 --YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             --EEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             --EEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence              3444432     4688999987542  221111111112222  3677777777653     4888998876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.76  E-value=0.011  Score=47.91  Aligned_cols=222  Identities=13%  Similarity=0.033  Sum_probs=108.4

Q ss_pred             eEEEEec--CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC----CcEEEEeCCCCceee--
Q 019482           77 DFVCSTT--NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD----GHLRIMHWPSLRIIL--  148 (340)
Q Consensus        77 ~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~--  148 (340)
                      .++.|+.  ...+.+||..+.+..... .  .+ .. ......+.  .++..++.|+.+    ..+.+||+.+.+-..  
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~-~--~p-~~-r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~   86 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIR-C--PF-EK-RRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL   86 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECC-C--CS-CC-CBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCC-C--CC-cc-cceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence            4445544  256888998877643221 1  11 01 11112222  366677777754    568899988765322  


Q ss_pred             ccccCccceeEEEecCCCCeEEEeeCC------CeEEEEEccCCeeEEEeecCCCCce-eeEEEccCCCcceEEEEEecC
Q 019482          149 DEPKAHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKI-ELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      ...........+.+  ++++++.|+.+      ..+.+||..+.+-.. +........ .++.. -+++ +    .+.++
T Consensus        87 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~-~~~~-i----yv~GG  157 (306)
T 3ii7_A           87 GPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT-KPSMLTQRCSHGMVE-ANGL-I----YVCGG  157 (306)
T ss_dssp             CCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEE-ETTE-E----EEECC
T ss_pred             CCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-CCCCcCCcceeEEEE-ECCE-E----EEECC
Confidence            22211112222222  57777887755      468899988765322 211111111 12222 2443 2    23333


Q ss_pred             C---------cceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeeccccc
Q 019482          222 D---------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       222 ~---------d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~  285 (340)
                      .         -..+.+||+.+.+-  +..+......-..+.+  ++++++.|+.+     ..+.+||+.+.+-.......
T Consensus       158 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p  235 (306)
T 3ii7_A          158 SLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP  235 (306)
T ss_dssp             EESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS
T ss_pred             CCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC
Confidence            2         35588999887642  2211111111122222  66777777653     46889999886544322111


Q ss_pred             ccccceeeEEEecCCeEEEEEecC-----CcEEEEEec
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKE-----WGAMITKLT  318 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iw~~~  318 (340)
                      . ...-.+++. -++++++.|+.+     ..+.+|+..
T Consensus       236 ~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          236 W-KGVTVKCAA-VGSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             C-CBSCCEEEE-ETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             C-CccceeEEE-ECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            1 111112222 267888888865     335555543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.73  E-value=0.028  Score=51.90  Aligned_cols=229  Identities=12%  Similarity=0.038  Sum_probs=132.8

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ...|.++.-..+|. |-.|+.+| +..||-...+   .....  . ......|.++.-..++ .|..|+.+| +..||..
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~---~~~~~--~-~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~   90 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQ---QHFTY--G-ENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYR   90 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEE---ECSCT--T-STTSSCEEEEEEETTT-EEEEEETTE-EEEEETT
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceE---EEEcc--C-CCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCC
Confidence            45799999888774 55667788 7777743222   11110  0 1123568888877776 555566555 7899987


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee----cCCCCceeeEEEccCCCcceEEEEE
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT----RNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      +.+...........|.++.. .++. |..++.+ -+..+|..+++.. .+.    ......|.++...+++..      .
T Consensus        91 ~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~l------W  160 (758)
T 3ott_A           91 ADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQI------Y  160 (758)
T ss_dssp             TTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCE------E
T ss_pred             CCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCE------E
Confidence            65432211111234666654 3554 5555555 6888998765543 221    112345788887777773      3


Q ss_pred             ecCCcceEEEEECCCCcEEeeeecc------CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLL------RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~  292 (340)
                      .++.+ -+..+|..+++... +...      ...|.++...+++..|..|+. +-+..+|..+++..... ... ...|.
T Consensus       161 igt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~-~l~-~~~i~  235 (758)
T 3ott_A          161 VGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTE-AFH-NNSIK  235 (758)
T ss_dssp             EEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEE-EEE-EEEEE
T ss_pred             EEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEecc-CCC-CCeEE
Confidence            33334 47788887665322 1111      124778887777776666664 45888998776543321 111 34688


Q ss_pred             eEEEecCCeEEEEEecCCcEEEEEec
Q 019482          293 LVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       293 ~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ++...++|.+.+.. . +.+.+++..
T Consensus       236 ~i~~d~~g~lWigT-~-~Gl~~~~~~  259 (758)
T 3ott_A          236 SLALDGNGDLLAGT-D-NGLYVYHND  259 (758)
T ss_dssp             EEEECTTCCEEEEE-T-TEEEEECCT
T ss_pred             EEEEcCCCCEEEEe-C-CceeEEecC
Confidence            88888888766544 3 456666543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.72  E-value=0.0055  Score=50.86  Aligned_cols=98  Identities=10%  Similarity=0.098  Sum_probs=46.5

Q ss_pred             CCCeEEEEecC-CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-C---------CcEEEEeCC
Q 019482           74 SGDDFVCSTTN-GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D---------GHLRIMHWP  142 (340)
Q Consensus        74 ~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~~~d~~  142 (340)
                      ++..++.|+.+ ..+.+||+............ .+.. .......+.  -+++.++.|+. +         ..+.+||+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~-~p~~-~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAA-FPGG-PRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCC-CTTC-CCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCC-CCCC-cCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            56666666544 46888887642222222211 1100 111112222  25667777765 2         468899988


Q ss_pred             CCceeeccccC-ccceeEEEecCCCCeEEEeeCC
Q 019482          143 SLRIILDEPKA-HKSVLDMDFSLDSEFLATTSTD  175 (340)
Q Consensus       143 ~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d  175 (340)
                      +.+-....... .......+...++++++.|+.+
T Consensus        95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             CCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            76533221111 1111111122467788888754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.72  E-value=0.013  Score=47.54  Aligned_cols=188  Identities=13%  Similarity=0.045  Sum_probs=92.0

Q ss_pred             CCCeEEEEec----C-----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEE
Q 019482           74 SGDDFVCSTT----N-----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIM  139 (340)
Q Consensus        74 ~~~~l~~~~~----d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~  139 (340)
                      ++..++.|+.    +     ..+.+||+.+.+..... .  .. . .......+.+  +++.++.|+.+     ..+.+|
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~--~p-~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~y  142 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA-P--MS-V-PRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERY  142 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC-C--CS-S-CCBTCEEEEE--TTEEEEECCEETTEECCCEEEE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC-C--CC-c-CccccEEEEE--CCEEEEEcCCCCCcccccEEEE
Confidence            5666667665    2     46888888776543221 1  11 0 1111122222  66677777643     358889


Q ss_pred             eCCCCceeec--cccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcc
Q 019482          140 HWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       140 d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  212 (340)
                      |+.+.+-...  ..........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.......-.++... +++. 
T Consensus       143 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i-  218 (308)
T 1zgk_A          143 EPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCI-  218 (308)
T ss_dssp             ETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEE-
T ss_pred             CCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEE-
Confidence            9877653321  1111112222222  57777777754     4588999876643221111111111122222 3332 


Q ss_pred             eEEEEEecCCc-----ceEEEEECCCCcEE--eeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceE
Q 019482          213 FLFCTVQRGDK-----ALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI  278 (340)
Q Consensus       213 ~~~~~~~~~~d-----~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~  278 (340)
                          .+.++.+     ..+.+||+.+.+-.  ..+.........+.  -++++++.|+.+     ..+.+||+.+.+-
T Consensus       219 ----yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  290 (308)
T 1zgk_A          219 ----YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDTW  290 (308)
T ss_dssp             ----EEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             ----EEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence                3444432     56899998875422  11111111112222  256777777654     3577788776543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.69  E-value=0.015  Score=47.76  Aligned_cols=236  Identities=14%  Similarity=0.104  Sum_probs=122.3

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC---CCeEEEc---cCCCc
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD---GSRFAAG---GVDGH  135 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~---~~dg~  135 (340)
                      .-.....++|.|+|+.+++-...|.|++++..++... .+................|+++|+   +.+|+..   ..++.
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            3456889999999986666554888888876544321 111110111224567899999995   3344432   23455


Q ss_pred             EEEEeCCCC----------ceee-cccc-CccceeEEEecCCCCeEEEeeC-------------CCeEEEEEccCCe---
Q 019482          136 LRIMHWPSL----------RIIL-DEPK-AHKSVLDMDFSLDSEFLATTST-------------DGSARIWKTEDGV---  187 (340)
Q Consensus       136 i~~~d~~~~----------~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~-------------d~~v~iwd~~~~~---  187 (340)
                      |.-|.+..+          +.+. .+.. .......|.|.|||.+.++.+.             -|.|.-.+....-   
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            666665441          1111 1111 1113467999999987777542             2444444443210   


Q ss_pred             ----eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc--eEEEEECCCCc------------------EEeeeecc
Q 019482          188 ----AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA--LLAVYDISTWN------------------KIGHKRLL  243 (340)
Q Consensus       188 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~------------------~~~~~~~~  243 (340)
                          ....+...+. ....++|+|++.. +   ..-.+.++  .|...  ..+.                  ++..+..+
T Consensus       189 nPf~~~~i~a~G~R-Np~Gla~dp~G~L-~---~~d~g~~~~deln~i--~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~  261 (347)
T 3das_A          189 NPFPGSPVYSYGHR-NVQGLAWDDKQRL-F---ASEFGQDTWDELNAI--KPGDNYGWPEAEGKGGGSGFHDPVAQWSTD  261 (347)
T ss_dssp             CSSTTCCEEEBCCS-BCCEEEECTTCCE-E---EEECCSSSCEEEEEE--CTTCBCCTTTCCSSCCCTTCCCCSEEECTT
T ss_pred             CCCCCCeEEeeCCC-CcceEEECCCCCE-E---EEecCCCCCceeeEE--cCCCEecCCcccCCCCCccccCCcEecCCC
Confidence                0112222332 3678999998763 1   12222222  23322  2111                  11111111


Q ss_pred             CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe---ecccccccccceeeEEEecCCeEEEEEe
Q 019482          244 RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN---HWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       244 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      ......++|. +|..+...-..+.|....+......   ..+.... ...+..++..|||.++++.+
T Consensus       262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEEC
T ss_pred             CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEc
Confidence            1234556665 3555555555567777777654321   1111121 35799999999998776654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.69  E-value=0.0041  Score=46.99  Aligned_cols=181  Identities=8%  Similarity=-0.064  Sum_probs=98.8

Q ss_pred             CCeEEEccCCCcEEEEeCCCCce--e---eccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE------E
Q 019482          124 GSRFAAGGVDGHLRIMHWPSLRI--I---LDEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW------T  190 (340)
Q Consensus       124 ~~~l~~~~~dg~i~~~d~~~~~~--~---~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~------~  190 (340)
                      ...|+...+| +++.=....+..  -   ....+.  -..+..++|+|+|.+.++  .+|.++-.+..+.+..      .
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence            3455666666 555544444331  0   011112  236789999999986666  5777666665442111      1


Q ss_pred             EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe-----ee--eccCCCeeEEEECCCCCEEEEee
Q 019482          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-----HK--RLLRKPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-----~~--~~~~~~i~~~~~s~~~~~l~~~~  263 (340)
                      .+-...-....++.|.|+|..      ... .|+.|.-++..+...-.     ..  ...=..+..+.+.|+|.+.++. 
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~L------Yav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYL------YAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCE------EEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred             EecccccccceEEEECCCCCE------EEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence            111001112478999999983      333 56888888764322110     01  1111467899999999887777 


Q ss_pred             CCCcEEEEeccCceEeecc------cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          264 KDGDICVVDVKKMEINHWS------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       264 ~dg~i~i~d~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                       |+.++-....+......+      -... -..-+.+.|.+++.+.+..  +|  ++|....|.
T Consensus       153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p~  210 (236)
T 1tl2_A          153 -GQQFYKALPPVSNQDNWLARATKIGQGG-WDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPPS  210 (236)
T ss_dssp             -TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGEEEEEECTTSCEEEEE--TT--EEEEESCCC
T ss_pred             -CCcEEecCCCCCCCcccccccceeccCC-cceEEEEEECCCCcEEEEe--CC--eEEecCCcc
Confidence             777554433322111111      0011 1234557799999877766  55  677776664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.69  E-value=0.02  Score=49.13  Aligned_cols=111  Identities=11%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeee-ccccCCCCCCCCCeEEEEEecC---CCeEEEccC------
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVD---GSRFAAGGV------  132 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~------  132 (340)
                      -.....++|.|+|+++++-...+.|++++..++...... ................|+|+|+   +..|+.+..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            456789999999986665443346877775444322111 1110000113467889999995   555554432      


Q ss_pred             -------CCcEEEEeCCCC-------ceeec-ccc-CccceeEEEecCCCCeEEEee
Q 019482          133 -------DGHLRIMHWPSL-------RIILD-EPK-AHKSVLDMDFSLDSEFLATTS  173 (340)
Q Consensus       133 -------dg~i~~~d~~~~-------~~~~~-~~~-~~~~i~~~~~~~~~~~l~~~~  173 (340)
                             ...|.-+++...       +.+.. +.. .......|+|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   134555554321       11211 111 112468899999998777654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.64  E-value=0.016  Score=46.80  Aligned_cols=187  Identities=9%  Similarity=0.046  Sum_probs=94.8

Q ss_pred             CCCeEEEEecC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------CcEEEEeCCC
Q 019482           74 SGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPS  143 (340)
Q Consensus        74 ~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~  143 (340)
                      ++..++.|+.+    ..+.+||+.+.+..... .  .+ ... .....+.  -+++.++.|+.+      ..+.+||..+
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~-~--~p-~~r-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL-G--PP-TPR-DSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEE-C--CS-SCC-BSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECC-C--CC-ccc-cceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence            56677777754    56888888877543221 1  11 011 1112222  266677777755      4588999887


Q ss_pred             Cceeec--cccCccceeEEEecCCCCeEEEeeC---------CCeEEEEEccCCeeEEEeecCCCCce-eeEEEccCCCc
Q 019482          144 LRIILD--EPKAHKSVLDMDFSLDSEFLATTST---------DGSARIWKTEDGVAWTFLTRNSDEKI-ELCRFSKDGTK  211 (340)
Q Consensus       144 ~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~v~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~  211 (340)
                      .+-...  ..........+.  -++++++.|+.         -..+.+||+.+.+-.. +........ .++... +++.
T Consensus       128 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~-~~~i  203 (306)
T 3ii7_A          128 ESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVFV-KDKI  203 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE-TTEE
T ss_pred             CceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEEE-CCEE
Confidence            653221  111111112222  25677777763         3458899988764322 221111111 122222 3432


Q ss_pred             ceEEEEEecCCc-----ceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceE
Q 019482          212 PFLFCTVQRGDK-----ALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEI  278 (340)
Q Consensus       212 ~~~~~~~~~~~d-----~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~  278 (340)
                           .+.++.+     ..+.+||+.+.+  .+..+.........+.+  +++.++.|+.+     ..+.+||+.+.+-
T Consensus       204 -----~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  275 (306)
T 3ii7_A          204 -----FAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW  275 (306)
T ss_dssp             -----EEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred             -----EEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence                 3344432     468899988754  22222222222223333  67777888754     4688889887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.59  E-value=0.02  Score=46.20  Aligned_cols=224  Identities=13%  Similarity=0.058  Sum_probs=107.9

Q ss_pred             CeEEEEecC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-----CcEEEEeCCCCce
Q 019482           76 DDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-----GHLRIMHWPSLRI  146 (340)
Q Consensus        76 ~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~  146 (340)
                      ..++.|+.+    ..+..||+.+.+....  . ..+   ....-.+++. -++..++.|+.+     ..+.+||..+.+-
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~--~-~~p---~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W   89 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQV--A-ELP---SRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQW   89 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEE--C-CCS---SCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEE
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEc--c-cCC---cccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCce
Confidence            344445432    3578888877653221  1 111   1111112222 266677777754     3588899877653


Q ss_pred             eec--cccCccceeEEEecCCCCeEEEeeCCC-----eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe
Q 019482          147 ILD--EPKAHKSVLDMDFSLDSEFLATTSTDG-----SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       147 ~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                      ...  ..........+.  -+++.++.|+.++     .+.+||+.+.+-...-.......-.+++. -+++ +    .+.
T Consensus        90 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~-i----yv~  161 (302)
T 2xn4_A           90 TSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGL-L----YAV  161 (302)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTE-E----EEE
T ss_pred             eeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCE-E----EEE
Confidence            221  111111222222  2577777777553     57888887664322211111111112222 2333 2    233


Q ss_pred             cCC-------cceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeeccccc
Q 019482          220 RGD-------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       220 ~~~-------d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~  285 (340)
                      ++.       ...+.+||+.+.+=  +..+.........+.  -++++++.|+.+     ..+.+||+.+.+-.......
T Consensus       162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~  239 (302)
T 2xn4_A          162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN  239 (302)
T ss_dssp             CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             eCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC
Confidence            332       24588999887542  222221111122222  267777777654     46899999886544322111


Q ss_pred             ccccceeeEEEecCCeEEEEEecCC-----cEEEEEec
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEW-----GAMITKLT  318 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iw~~~  318 (340)
                      . . .........++++++.|+.++     .+.+|+..
T Consensus       240 ~-~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          240 M-C-RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             S-C-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             C-c-cccCeEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence            1 1 111112234778888888664     36666654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.58  E-value=0.0026  Score=48.04  Aligned_cols=143  Identities=11%  Similarity=-0.048  Sum_probs=80.4

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccc--------eeEEEecCCCCeEEEeeCCCeEEEEEcc
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS--------VLDMDFSLDSEFLATTSTDGSARIWKTE  184 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~l~~~~~d~~v~iwd~~  184 (340)
                      ..+.+++|+|+|.+.++  .+|.+.-.+..+..... .......        ...+.|.|+|.+.++  .||.|+-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCccc-ccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            36679999999976555  67877766654422211 1111112        478899999987777  46988877753


Q ss_pred             CCeeE------EEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE------Eeeee-ccCCCeeEEE
Q 019482          185 DGVAW------TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK------IGHKR-LLRKPASVLS  251 (340)
Q Consensus       185 ~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~------~~~~~-~~~~~i~~~~  251 (340)
                      +...-      ..+-...=..+..+.|.|+|.      +.+.. |+.++-....+...      ...+. ..-...+.+.
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~------Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~  188 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGY------LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLF  188 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSC------EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCce------EEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEE
Confidence            32111      111111113578999999998      44444 66654333322110      01111 1112345567


Q ss_pred             ECCCCCEEEEeeCCCcEE
Q 019482          252 ISLDGKYLAMGSKDGDIC  269 (340)
Q Consensus       252 ~s~~~~~l~~~~~dg~i~  269 (340)
                      |.|++.+.++.  ++.++
T Consensus       189 f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          189 FSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             ECTTSCEEEEE--TTEEE
T ss_pred             ECCCCcEEEEe--CCeEE
Confidence            88888777766  66443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.0018  Score=52.94  Aligned_cols=115  Identities=12%  Similarity=0.056  Sum_probs=70.6

Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeecccc-CCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceeeccccC
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                      ..++.++.||.|.-+|..+++....+.... .+.+....+.    ...++..++.. +.||.|..++..+|.....+...
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~----~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPS----RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSC----TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCc----cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence            468888999999999998888877775431 1111100000    00123333333 57999999998887544322211


Q ss_pred             ccce--eEEEec-----------CCCCeEEEeeCCCeEEEEEccCCeeEEEeecC
Q 019482          154 HKSV--LDMDFS-----------LDSEFLATTSTDGSARIWKTEDGVAWTFLTRN  195 (340)
Q Consensus       154 ~~~i--~~~~~~-----------~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~  195 (340)
                       ..+  .-+...           ..+..+++|+.++.+...|+++|+.+..+...
T Consensus        87 -~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 -QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             -HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             -cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence             111  001111           14567889999999999999999999888643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.52  E-value=0.014  Score=48.82  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=75.9

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeee------------eeccccCCCCCCCCCeEEEEEec---CCCeEE
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI------------NLLAKKMPPLQDAGPQKCLSFSV---DGSRFA  128 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~  128 (340)
                      +.|..+..+|+|++||..+..+ |.|-.+..+....            .+..... ......+|..+.|+|   .+..|+
T Consensus        66 ~~i~qlvlSpsG~lLAl~g~~~-V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~-~~~~~s~I~qVlWHPl~~~ds~LV  143 (452)
T 3pbp_A           66 DDTFHVISSTSGDLLCLFNDNE-IFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE-EVGPKSSIKKVLFHPKSYRDSCIV  143 (452)
T ss_dssp             CTTCEEEECTTSSEEEEECSSE-EEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC-C--CCCCEEEEEECTTBGGGCEEE
T ss_pred             CceeEEEECCCCCEEEEecCCe-EEEEEecCccccCcccccccccceeEEEcCCc-ccCCCCceeEEEeccccCCCCeEE
Confidence            3688899999999999887654 9998887332111            1111111 111357899999999   455788


Q ss_pred             EccCCCcEEEEeCCCCc-eeeccc------c---CccceeEEEecCCCCeEEEee--CCCeEEEE
Q 019482          129 AGGVDGHLRIMHWPSLR-IILDEP------K---AHKSVLDMDFSLDSEFLATTS--TDGSARIW  181 (340)
Q Consensus       129 ~~~~dg~i~~~d~~~~~-~~~~~~------~---~~~~i~~~~~~~~~~~l~~~~--~d~~v~iw  181 (340)
                      +-..|+.|++||+.... ....+.      +   ....|.+++|.+++-.|...+  ..|.|+-.
T Consensus       144 VLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          144 VLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            88999999999997522 111111      1   114688999998776666644  67777653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.50  E-value=0.019  Score=48.01  Aligned_cols=152  Identities=11%  Similarity=0.025  Sum_probs=94.1

Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc----
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN----  235 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----  235 (340)
                      ..+|..++.+- ++.||.-++.....-+.+...   .-..+..+..+|+|..      ++-..+..|.|-.+..+.    
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~l------LAl~g~~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDL------LCLFNDNEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSE------EEEECSSEEEEEECCTTCSCCC
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCE------EEEecCCeEEEEEecCccccCc
Confidence            34555555553 578888887744444444433   1225788999999995      222346678888877321    


Q ss_pred             --------EEeeeec------cCCCeeEEEECCC---CCEEEEeeCCCcEEEEeccCce-Eeeccc---cc----ccccc
Q 019482          236 --------KIGHKRL------LRKPASVLSISLD---GKYLAMGSKDGDICVVDVKKME-INHWSK---RL----HLGTS  290 (340)
Q Consensus       236 --------~~~~~~~------~~~~i~~~~~s~~---~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~----~~~~~  290 (340)
                              ..+.+..      ...+|..+.|+|-   +..|++-..|+.|++||+.... ....+.   ..    .....
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~e  181 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVND  181 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccce
Confidence                    1112222      2467999999994   5689999999999999997521 111111   00    00146


Q ss_pred             eeeEEEecCCeEEEEE--ecCCcEEEEEecCCC
Q 019482          291 IALVEFCPTQRVVLTA--SKEWGAMITKLTVPA  321 (340)
Q Consensus       291 i~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~  321 (340)
                      |.+++|..++-.|...  +.+|.|+-..--.|.
T Consensus       182 v~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~  214 (452)
T 3pbp_A          182 ITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPS  214 (452)
T ss_dssp             EEEEEECTTSSCEEEEECTTSCEEEEESSCCCS
T ss_pred             EEEEEEcCCCcEEEEEecCCCCCEEEECCCCcc
Confidence            8899999988656554  477777655444444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.46  E-value=0.03  Score=45.30  Aligned_cols=226  Identities=12%  Similarity=-0.031  Sum_probs=109.9

Q ss_pred             CCCeEEEEecC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----C-----CcEEEEe
Q 019482           74 SGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----D-----GHLRIMH  140 (340)
Q Consensus        74 ~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~~~d  140 (340)
                      ++..++.|+.+    ..+.+||..+.+....  .. .   +....-.+++. .+++.++.|+.    +     ..+.+||
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~--~~-~---p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL--AD-L---QVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEEC--CC-C---SSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeEC--CC-C---CcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEEC
Confidence            45566666632    3688899877664322  11 1   11111112222 26667777765    2     4588899


Q ss_pred             CCCCceeec--cccCccceeEEEecCCCCeEEEeeCC-----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          141 WPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTD-----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       141 ~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      +.+.+-...  ..........+.+  ++++++.|+.+     ..+.+||+.+.+-...-.......-.++... ++..  
T Consensus        97 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i--  171 (308)
T 1zgk_A           97 PMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLL--  171 (308)
T ss_dssp             TTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEE--
T ss_pred             CCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEE--
Confidence            877653221  1111112222222  57777777643     3688899877643221111111111122222 3332  


Q ss_pred             EEEEEecCC-----cceEEEEECCCCcEE--eeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeec
Q 019482          214 LFCTVQRGD-----KALLAVYDISTWNKI--GHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHW  281 (340)
Q Consensus       214 ~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~  281 (340)
                         .+.++.     ...+.+||+.+.+=.  ..+.........+.+  ++++++.|+.+     ..+.+||+.+.+-...
T Consensus       172 ---yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          172 ---YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             ---EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             ---EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence               233333     246889998775422  111111112222233  66777777654     5699999988764432


Q ss_pred             ccccccccceeeEEEecCCeEEEEEecCC-----cEEEEEec
Q 019482          282 SKRLHLGTSIALVEFCPTQRVVLTASKEW-----GAMITKLT  318 (340)
Q Consensus       282 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iw~~~  318 (340)
                      ..... ...-.+++. -++++++.|+.++     .+.+|++.
T Consensus       247 ~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          247 APMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPD  286 (308)
T ss_dssp             CCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCC
Confidence            21111 111122222 3678888887653     34455543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.37  E-value=0.045  Score=45.29  Aligned_cols=194  Identities=9%  Similarity=0.003  Sum_probs=103.7

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-eeecc---ccCccceeEEEecCC---CCeEEEeeC----C----Ce
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-IILDE---PKAHKSVLDMDFSLD---SEFLATTST----D----GS  177 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~---~~~~~~i~~~~~~~~---~~~l~~~~~----d----~~  177 (340)
                      .....++|.|+|++++ +..+|.|++++ .+++ .+..+   .........|+++|+   +..|..+..    +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4568899999997554 45669999997 3443 22211   112346789999997   444444432    3    56


Q ss_pred             EEEEEccCC-------eeE-EEeecCCCCceeeEEEccCCCcceEEEEEecCC-------------cceEEEEECCCC--
Q 019482          178 ARIWKTEDG-------VAW-TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD-------------KALLAVYDISTW--  234 (340)
Q Consensus       178 v~iwd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------d~~i~i~d~~~~--  234 (340)
                      |..|+....       +.+ ..+..........++|.|||..     .++.+.             .+.|.-++....  
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~L-----yvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p  181 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGML-----YITTGDAADPRLAQDLSSLAGKILRVDEEGRPP  181 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCE-----EEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcE-----EEEECCCCCCccccCCCCCCeEEEEEcCCCCCC
Confidence            777877643       111 1122111223578999999963     222221             245666665432  


Q ss_pred             ------cEEeeeeccCCCeeEEEECC-CCCEEEEeeCCC---cEEEEeccCce------------------Eeecccccc
Q 019482          235 ------NKIGHKRLLRKPASVLSISL-DGKYLAMGSKDG---DICVVDVKKME------------------INHWSKRLH  286 (340)
Q Consensus       235 ------~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg---~i~i~d~~~~~------------------~~~~~~~~~  286 (340)
                            .......++ .....++|+| +|+++++-...+   .|.+..  .+.                  +...+  .+
T Consensus       182 ~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~--~~  256 (354)
T 3a9g_A          182 ADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDT--GS  256 (354)
T ss_dssp             TTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEEC--TT
T ss_pred             CCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeec--CC
Confidence                  111111222 2356799999 566555432221   244332  211                  11111  01


Q ss_pred             cccceeeEEEe-------cCCeEEEEEecCCcEEEEEec
Q 019482          287 LGTSIALVEFC-------PTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       287 ~~~~i~~~~~~-------~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .......++|.       .+|.++++.-..+.|...+++
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~  295 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFG  295 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEEC
Confidence            12357788883       567777776666666666665

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.30  E-value=0.042  Score=45.10  Aligned_cols=160  Identities=8%  Similarity=0.004  Sum_probs=91.3

Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEE--Eee---cCCCCceeeEEEccC---CCcceEEEEEecCCcceE
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWT--FLT---RNSDEKIELCRFSKD---GTKPFLFCTVQRGDKALL  226 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~--~~~---~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~d~~i  226 (340)
                      .....|+|.|+|.++++--..|.|++++...++...  .+.   .........++++|+   +..+|+  ..+...++.|
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv--~yt~~~~~~v  109 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA--YFTSASDNRI  109 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE--EEECSSSEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE--EEecCCCCEE
Confidence            456899999999877766558999999876554321  111   122345789999996   343332  2333455667


Q ss_pred             EEEECCCC----------cEEe-eee-ccCCCeeEEEECCCCCEEEEeeC-------------CCcEEEEeccCce----
Q 019482          227 AVYDISTW----------NKIG-HKR-LLRKPASVLSISLDGKYLAMGSK-------------DGDICVVDVKKME----  277 (340)
Q Consensus       227 ~i~d~~~~----------~~~~-~~~-~~~~~i~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~~~~----  277 (340)
                      .-|.+...          +.+. .+. ...+....+.|.|||.+.++.+.             .|.|.-++....-    
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            76766542          1111 111 11234567999999987776542             3555555554320    


Q ss_pred             ---EeecccccccccceeeEEEecCCeEEEEE-ecCCcEEEEEec
Q 019482          278 ---INHWSKRLHLGTSIALVEFCPTQRVVLTA-SKEWGAMITKLT  318 (340)
Q Consensus       278 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iw~~~  318 (340)
                         ....+..++  .....++|+|+|.+.++= +.|+.-.|-.+.
T Consensus       190 Pf~~~~i~a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~  232 (347)
T 3das_A          190 PFPGSPVYSYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIK  232 (347)
T ss_dssp             SSTTCCEEEBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEEC
T ss_pred             CCCCCeEEeeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEc
Confidence               011122233  246789999998766553 334444455554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.20  E-value=0.071  Score=51.70  Aligned_cols=236  Identities=10%  Similarity=0.064  Sum_probs=131.4

Q ss_pred             EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee-
Q 019482           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-  147 (340)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-  147 (340)
                      .-.+|..+.+|.-. ..+++|+|+++........        ...+|.--.|-.+. .|+..+ +..|+-|++...... 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--------~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~  139 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPV  139 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccc--------cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccH
Confidence            44678777666554 5679999998776544332        22455555665443 444443 457999999753333 


Q ss_pred             eccccCc----cceeEEEecCCCCeEEEee-------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482          148 LDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       148 ~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      ..+..|.    ..|.....+++.++++..+       -.|.+.+|..+.+.. +.+. +|.+....+....+.....++|
T Consensus       140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~ie-gha~~F~~~~~~~~~~~~~l~~  217 (1630)
T 1xi4_A          140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE-GHAASFAQFKMEGNAEESTLFC  217 (1630)
T ss_pred             HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhh-HhHhhhheeccCCCCCCceEEE
Confidence            3333332    3677788899998876543       357889998865432 2222 2322232232221111112333


Q ss_pred             EEec-CCcceEEEEECCCC---cEEe------eeecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          217 TVQR-GDKALLAVYDISTW---NKIG------HKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       217 ~~~~-~~d~~i~i~d~~~~---~~~~------~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      ++.- ...+.++|.++...   .+..      .+...   ..-..++..++.-..+...+.-|.|++||+.++.++..-.
T Consensus       218 f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence            3322 22468888888543   1110      01111   1123456778877888889999999999999998875432


Q ss_pred             ccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          284 RLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                       .. ..+|-..+-+....-++.....|.|.--.++.
T Consensus       298 -is-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          298 -IS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             -cc-CCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence             22 23444444333333344444666655555543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.14  E-value=0.079  Score=43.78  Aligned_cols=57  Identities=14%  Similarity=0.116  Sum_probs=29.5

Q ss_pred             eEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCCC------cEEEEeccCceEeeccc
Q 019482          225 LLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKDG------DICVVDVKKMEINHWSK  283 (340)
Q Consensus       225 ~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~  283 (340)
                      .+.+||+.+.+  .+..+......-.+  ...+++.++.|+.++      .+.++++++++......
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            57789987643  33333222222222  334677888887643      35666887777655443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.14  E-value=0.16  Score=46.88  Aligned_cols=233  Identities=6%  Similarity=-0.017  Sum_probs=125.8

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      ..|.++.-.++|...+ |+..| +..++..+++......... ........|.++...+++. |-.|+..+-|..+|..+
T Consensus       373 ~~v~~i~~d~~g~lWi-gt~~G-L~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~  448 (758)
T 3ott_A          373 NRIRHIYEDKEQQLWI-ATDGS-INRYDYATRQFIHYNIVDN-TGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHK  448 (758)
T ss_dssp             SCEEEEEECTTSCEEE-EETTE-EEEEETTTTEEEEEEEECC-C--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHH
T ss_pred             CceEEEEECCCCCEEE-EeCCc-HhhcCcCCCcEEEeecCCC-cCCCCCceEEEEEEcCCCC-EEEEECCCceEEEcccc
Confidence            3588888877776444 45444 9999987765432211111 0001234688888777775 44456555688888542


Q ss_pred             C-----ceee---cc---cc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecC--CCCceeeEEEccCC
Q 019482          144 L-----RIIL---DE---PK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRN--SDEKIELCRFSKDG  209 (340)
Q Consensus       144 ~-----~~~~---~~---~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~  209 (340)
                      .     ....   .+   .+ ....|.++...++|++.+.++..+-|..+|.++++........  ....+.++....+|
T Consensus       449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g  528 (758)
T 3ott_A          449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDG  528 (758)
T ss_dssp             HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTS
T ss_pred             ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCC
Confidence            1     1110   00   11 1125888888888887653333455888998776554322111  12356778777778


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEee-e-eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGH-K-RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHL  287 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  287 (340)
                      .      +..++..| +..||..+.+.... . ......+.++... +| .|..++.+| |..||..+.+....-..   
T Consensus       529 ~------lWigt~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~~~~~---  595 (758)
T 3ott_A          529 L------LWVGFHGG-VMRINPKDESQQSISFGSFSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQQNMT---  595 (758)
T ss_dssp             C------EEEEETTE-EEEECC--CCCCBCCCCC---CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEEC--C---
T ss_pred             C------EEEEecCc-eEEEecCCCceEEecccCCCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEEecCC---
Confidence            7      34444444 88888766543211 0 1112457777653 55 555555555 88889887665432111   


Q ss_pred             ccceeeEEEe-cCCeEEEEEecCCcEEE
Q 019482          288 GTSIALVEFC-PTQRVVLTASKEWGAMI  314 (340)
Q Consensus       288 ~~~i~~~~~~-~~~~~l~~~~~dg~i~i  314 (340)
                      ...+....+. ++|. |..|+.+|-+.+
T Consensus       596 ~~~~~~~~~~~~~G~-l~fG~~~Gl~~f  622 (758)
T 3ott_A          596 NKRFTSLLFDPKEDC-VYLGGADGFGIS  622 (758)
T ss_dssp             CCCCSEEEEETTTTE-EEEECBSEEEEE
T ss_pred             CCceeeeEEECCCCc-EEEecCCceEEE
Confidence            2234444444 4665 566666665443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.12  E-value=0.077  Score=42.97  Aligned_cols=212  Identities=10%  Similarity=-0.000  Sum_probs=101.7

Q ss_pred             EEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----C-------CcEEEEeCCCCce
Q 019482           78 FVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----D-------GHLRIMHWPSLRI  146 (340)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~~~d~~~~~~  146 (340)
                      ++.|+  ..+.+||..+.+.....    .+. +. ..........+++.++.|+.    +       ..+..||..+.+-
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~----~~~-p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCAS----LSS-QV-PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEE----CCC-CS-CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             EEEcC--CceEEECCCCCeEecCC----CCC-CC-CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            33444  45889999887754211    110 01 11222233346777777763    1       1277888877653


Q ss_pred             eec--cccCccceeEEEecCCCCeEEEeeCC--------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482          147 ILD--EPKAHKSVLDMDFSLDSEFLATTSTD--------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       147 ~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      ...  ..........+.+  +++.++.|+.+        ..+.+||..+.+-. .+...........+...+++.     
T Consensus        80 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~~~~i-----  151 (315)
T 4asc_A           80 LGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG-ESDPLPYVVYGHTVLSHMDLV-----  151 (315)
T ss_dssp             EECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEEETTEE-----
T ss_pred             EECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEe-ECCCCCCcccceeEEEECCEE-----
Confidence            221  1111111112222  56777777732        45889998876422 221111111111122234432     


Q ss_pred             EEecCC------cceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCCC-----cEEEEeccCceEeeccc
Q 019482          217 TVQRGD------KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKDG-----DICVVDVKKMEINHWSK  283 (340)
Q Consensus       217 ~~~~~~------d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~  283 (340)
                      .+.++.      -..+.+||+.+.+=  +..+......-..+.  -+++.++.|+.++     .+.+||+.+.+-.....
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~  229 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA  229 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC
Confidence            334443      24688999887542  221211111112222  2667777777654     58889998865443221


Q ss_pred             ccccccceeeEEEecCCeEEEEEecC
Q 019482          284 RLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      ... ...-.+++ .-++++++.|+.+
T Consensus       230 ~p~-~r~~~~~~-~~~~~l~v~GG~~  253 (315)
T 4asc_A          230 FPQ-ERSSLSLV-SLVGTLYAIGGFA  253 (315)
T ss_dssp             CSS-CCBSCEEE-EETTEEEEEEEEE
T ss_pred             CCC-cccceeEE-EECCEEEEECCcc
Confidence            111 11112222 3367888888764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.09  E-value=0.094  Score=43.37  Aligned_cols=46  Identities=9%  Similarity=-0.032  Sum_probs=28.4

Q ss_pred             EEecCCcceEEEEECCCCcEEeeee---ccCCCeeEEEECCCCCEEEEe
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKR---LLRKPASVLSISLDGKYLAMG  262 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~  262 (340)
                      +++....+.|...++..++......   .....+..+++.|||.+.++.
T Consensus       292 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          292 FIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             EEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             EEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            3444556777777777554332222   223478899999999866643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.06  E-value=0.12  Score=44.30  Aligned_cols=111  Identities=12%  Similarity=0.079  Sum_probs=60.5

Q ss_pred             CCeeEEEEcCCCC-eEEEEecCCCEEEEEecCceeeeeeccccCCCC-----CCCCCeEEEEEecC---CCeEEEc-cC-
Q 019482           64 GDPMTIAVNPSGD-DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPL-----QDAGPQKCLSFSVD---GSRFAAG-GV-  132 (340)
Q Consensus        64 ~~v~~~~~~~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~l~~~-~~-  132 (340)
                      .....|+|.|+|. .|+++.+.|.|++++.........+........     ........|+|+|+   ..+|++. +. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            4578999999996 566778889999997543211111111000000     12467889999996   2233332 21 


Q ss_pred             -C----------CcEEEEeCCCC----------ceeeccc--cCccceeEEEecCCCCeEEEeeC
Q 019482          133 -D----------GHLRIMHWPSL----------RIILDEP--KAHKSVLDMDFSLDSEFLATTST  174 (340)
Q Consensus       133 -d----------g~i~~~d~~~~----------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~  174 (340)
                       +          ..|.-|.+..+          +.+....  ........|+|.|||.+.++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence             1          13444555321          1222221  11124578999999987776554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.97  E-value=0.11  Score=42.09  Aligned_cols=191  Identities=16%  Similarity=0.064  Sum_probs=90.6

Q ss_pred             EcCCCCeEEEEec-----C--C----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------
Q 019482           71 VNPSGDDFVCSTT-----N--G----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------  133 (340)
Q Consensus        71 ~~~~~~~l~~~~~-----d--~----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------  133 (340)
                      ...++..++.|+.     .  .    .+..||..+.+... + ..    .+....-.+++. -+++.++.|+.+      
T Consensus        42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~-~~----~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~  114 (315)
T 4asc_A           42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-M-PP----LPSPRCLFGLGE-ALNSIYVVGGREIKDGER  114 (315)
T ss_dssp             ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-C-CC----BSSCEESCEEEE-ETTEEEEECCEESSTTCC
T ss_pred             EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-C-CC----CCcchhceeEEE-ECCEEEEEeCCcCCCCCc
Confidence            3346777777773     1  1    26677877665422 1 11    111111112222 256666777632      


Q ss_pred             --CcEEEEeCCCCceee--ccccCccceeEEEecCCCCeEEEeeC-C-----CeEEEEEccCCeeEEEeecCCCCce-ee
Q 019482          134 --GHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTST-D-----GSARIWKTEDGVAWTFLTRNSDEKI-EL  202 (340)
Q Consensus       134 --g~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----~~v~iwd~~~~~~~~~~~~~~~~~v-~~  202 (340)
                        ..+.+||..+.+-..  ..+........+  ..++++++.|+. +     ..+.+||+.+.+-.. +........ .+
T Consensus       115 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~  191 (315)
T 4asc_A          115 CLDSVMCYDRLSFKWGESDPLPYVVYGHTVL--SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQTARSLFG  191 (315)
T ss_dssp             BCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCE
T ss_pred             ccceEEEECCCCCcEeECCCCCCcccceeEE--EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCCchhceE
Confidence              458899988765322  111111111222  235677777775 2     468999988764322 211111111 12


Q ss_pred             EEEccCCCcceEEEEEecCC-----cceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCC----------
Q 019482          203 CRFSKDGTKPFLFCTVQRGD-----KALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD----------  265 (340)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----------  265 (340)
                      +.. -+++ ++    +.++.     ...+.+||+.+.+=  +............+.  -++++++.|+.+          
T Consensus       192 ~~~-~~~~-iy----v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~  263 (315)
T 4asc_A          192 ATV-HDGR-II----VAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELV  263 (315)
T ss_dssp             EEE-ETTE-EE----EEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEE
T ss_pred             EEE-ECCE-EE----EEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCcccc
Confidence            222 2333 22    22222     23688999887542  221111111122222  256777777653          


Q ss_pred             ----CcEEEEeccCceEe
Q 019482          266 ----GDICVVDVKKMEIN  279 (340)
Q Consensus       266 ----g~i~i~d~~~~~~~  279 (340)
                          ..+.+||+.+.+-.
T Consensus       264 ~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          264 PTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             EEEEEEEEEEETTTTEEE
T ss_pred             ccccCcEEEecCCCChhh
Confidence                23667887776543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.87  E-value=0.18  Score=43.23  Aligned_cols=98  Identities=14%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee--ecccc------CccceeEEEecCC---CCeEEEeeC-------
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LDEPK------AHKSVLDMDFSLD---SEFLATTST-------  174 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~~~~------~~~~i~~~~~~~~---~~~l~~~~~-------  174 (340)
                      .....|+|.|+|+++++-...+.|++++..+++..  ..+..      .......|+|+|+   +..|..+..       
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999987776544457888876544432  22211      2346779999995   444444332       


Q ss_pred             ------CCeEEEEEccCC-------eeEE-EeecCCCCceeeEEEccCCC
Q 019482          175 ------DGSARIWKTEDG-------VAWT-FLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       175 ------d~~v~iwd~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~  210 (340)
                            ...|.-++...+       +.+. .+..........++|.|||.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~  156 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK  156 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence                  235655665432       1111 12222223478899999996

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.83  E-value=0.14  Score=41.41  Aligned_cols=196  Identities=14%  Similarity=0.046  Sum_probs=89.7

Q ss_pred             EcCCCCeEEEEec----CC-------CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------
Q 019482           71 VNPSGDDFVCSTT----NG-------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------  133 (340)
Q Consensus        71 ~~~~~~~l~~~~~----d~-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------  133 (340)
                      ...++..++.|+.    ++       .+..||..+.+....  ..    .+....-.+++.. +++.++.|+.+      
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~--~~----~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~  125 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL--PP----LPSARCLFGLGEV-DDKIYVVAGKDLQTEAS  125 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC--SC----BSSCBCSCEEEEE-TTEEEEEEEEBTTTCCE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC--CC----CCccccccceEEE-CCEEEEEcCccCCCCcc
Confidence            3446777777773    11       166777766654221  11    1111111122222 56666776653      


Q ss_pred             -CcEEEEeCCCCceeec--cccCccceeEEEecCCCCeEEEeeC------CCeEEEEEccCCeeEEEeecCCCCceeeEE
Q 019482          134 -GHLRIMHWPSLRIILD--EPKAHKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCR  204 (340)
Q Consensus       134 -g~i~~~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~  204 (340)
                       ..+.+||+.+.+-...  ......... +. ..++++++.|+.      -..+.+||+.+.+-...-.......-.++.
T Consensus       126 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  203 (318)
T 2woz_A          126 LDSVLCYDPVAAKWSEVKNLPIKVYGHN-VI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA  203 (318)
T ss_dssp             EEEEEEEETTTTEEEEECCCSSCEESCE-EE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             cceEEEEeCCCCCEeECCCCCCcccccE-EE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE
Confidence             2478889877653321  111111111 22 246777777764      235899998876432221111111111222


Q ss_pred             EccCCCcceEEEEEecC-CcceEEEEECCCCcE--EeeeeccCCCeeEEEECCCCCEEEEeeCC--------------Cc
Q 019482          205 FSKDGTKPFLFCTVQRG-DKALLAVYDISTWNK--IGHKRLLRKPASVLSISLDGKYLAMGSKD--------------GD  267 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------------g~  267 (340)
                      . -+++ ++++...... ....+.+||+.+.+=  +..+.........+.  .++++++.|+.+              ..
T Consensus       204 ~-~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~  279 (318)
T 2woz_A          204 I-HKGK-IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVND  279 (318)
T ss_dssp             E-ETTE-EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCC
T ss_pred             E-ECCE-EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeee
Confidence            2 2333 2221111110 124577899887542  222211111112222  356777777653              35


Q ss_pred             EEEEeccCceEe
Q 019482          268 ICVVDVKKMEIN  279 (340)
Q Consensus       268 i~i~d~~~~~~~  279 (340)
                      +.+||+.+.+-.
T Consensus       280 v~~yd~~~~~W~  291 (318)
T 2woz_A          280 IWKYEDDKKEWA  291 (318)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEeCCCCEeh
Confidence            778888776543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.80  E-value=0.29  Score=44.57  Aligned_cols=231  Identities=9%  Similarity=0.021  Sum_probs=111.9

Q ss_pred             CCCCeEEEEecC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCC------CcEEEEeC
Q 019482           73 PSGDDFVCSTTN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVD------GHLRIMHW  141 (340)
Q Consensus        73 ~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~~d~  141 (340)
                      .++..++.|+.+    ..+.+||..+.+..................-.+++..+ +++.++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46888998876543222010000011111123333333 67777777654      35788998


Q ss_pred             CCCceeec--cccCccceeEEEecCCCCeEEEeeCCC--eEEEEEccCCeeEEEeec-----CCCCceeeEEEccCCCcc
Q 019482          142 PSLRIILD--EPKAHKSVLDMDFSLDSEFLATTSTDG--SARIWKTEDGVAWTFLTR-----NSDEKIELCRFSKDGTKP  212 (340)
Q Consensus       142 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~--~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~  212 (340)
                      .+.+-...  ....... .+++.-.+++.++.|+.++  .+.+||..+.+-. .+..     ........+.+..+...+
T Consensus       476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccceeEEEEeCCCCEE
Confidence            87543221  2111111 2223323788888887654  6999998876432 2211     011112224445442332


Q ss_pred             eEEEEEecCC-------cceEEEEECCCCcE-----Eeeeec---cCCCeeEEEECCCCCEEEEeeC--------CCcEE
Q 019482          213 FLFCTVQRGD-------KALLAVYDISTWNK-----IGHKRL---LRKPASVLSISLDGKYLAMGSK--------DGDIC  269 (340)
Q Consensus       213 ~~~~~~~~~~-------d~~i~i~d~~~~~~-----~~~~~~---~~~~i~~~~~s~~~~~l~~~~~--------dg~i~  269 (340)
                          .+.++.       ...+.+||+.+.+-     -..+..   ....-.++....+++.++.|+.        ...+.
T Consensus       554 ----yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          554 ----IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             ----EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             ----EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence                233433       24688999887651     111111   1111123333333777777774        34699


Q ss_pred             EEeccCceEeeccccccc-----ccc-eeeEEEecCCeEEEEEecC
Q 019482          270 VVDVKKMEINHWSKRLHL-----GTS-IALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       270 i~d~~~~~~~~~~~~~~~-----~~~-i~~~~~~~~~~~l~~~~~d  309 (340)
                      +||+.+.+-.........     ... -.++...+++++++.||..
T Consensus       630 ~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~  675 (695)
T 2zwa_A          630 SLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA  675 (695)
T ss_dssp             EEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred             EEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence            999988765421100000     000 1233444566777877753

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.78  E-value=0.15  Score=41.02  Aligned_cols=213  Identities=10%  Similarity=0.066  Sum_probs=116.4

Q ss_pred             EEEcCCCCeEEEEecC--------------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc---
Q 019482           69 IAVNPSGDDFVCSTTN--------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---  131 (340)
Q Consensus        69 ~~~~~~~~~l~~~~~d--------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---  131 (340)
                      --++++|++|+.+...              ..|+..+++..+.  .....        .  .+..|++++++|+-..   
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~~--------~--~~~~~s~~g~~Iy~~~~~~  125 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLDP--------D--PCIYASLIGNYIYYLHYDT  125 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEEC--------S--CEEEEEEETTEEEEEEESS
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEeec--------C--CccEEEEeCCEEEEEeecC
Confidence            4567889988876543              2455555555432  22111        1  2337888888888765   


Q ss_pred             -CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeC-CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          132 -VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTST-DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       132 -~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                       ....|...++.... ...+..+.  +  ..++|+++.|.-.+. ...|..-++..+.....+.    +... ..+.|++
T Consensus       126 ~~~~~Iy~~~~dGs~-~~~lt~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~----~~~~-~~~~P~g  195 (302)
T 3s25_A          126 QTATSLYRIRIDGEE-KKKIKNHY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD----CNCY-KPVVLDD  195 (302)
T ss_dssp             SSCEEEEEEETTSCC-CEEEESSC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC----SCEE-EEEEEET
T ss_pred             CCCceEEEEECCCCC-eEEEeCCC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC----CCcc-ceeeecC
Confidence             23456666665333 33333332  2  456788888876664 5678888877655433322    1222 3456898


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC--CCcEEEEeccCceEeeccccccc
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKMEINHWSKRLHL  287 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~  287 (340)
                      ..++.   ........|..-++...... .+.  ...+  ..|+|++++|+.+..  .+.|..-++......... .   
T Consensus       196 ~~iy~---t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~-~---  263 (302)
T 3s25_A          196 TNVYY---MDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELA-K---  263 (302)
T ss_dssp             TEEEE---EEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEE-E---
T ss_pred             CEEEE---EEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEee-C---
Confidence            87432   11122256777777765532 222  2233  347888988887632  456777777654433322 1   


Q ss_pred             ccceeeEEEecCCeEEEEEec-CCcEEEEEecCC
Q 019482          288 GTSIALVEFCPTQRVVLTASK-EWGAMITKLTVP  320 (340)
Q Consensus       288 ~~~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~  320 (340)
                       ..+.  .+++.+.+|+-... .+.  |+.++..
T Consensus       264 -~~~~--~i~i~~d~Iy~td~~~~~--i~~~~~d  292 (302)
T 3s25_A          264 -GEFC--NINVTSQYVYFTDFVSNK--EYCTSTQ  292 (302)
T ss_dssp             -SCEE--EEEECSSEEEEEETTTCC--EEEEESS
T ss_pred             -Cccc--eEEEeCCEEEEEECCCCe--EEEEECC
Confidence             1233  45556666666553 344  5555543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.76  E-value=0.44  Score=46.08  Aligned_cols=247  Identities=9%  Similarity=0.058  Sum_probs=131.8

Q ss_pred             CceeEEeeeeecC--CCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEc---CCCCeE
Q 019482            4 GGTVTCGSWIKRP--ENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN---PSGDDF   78 (340)
Q Consensus         4 ~~~v~~~~w~~~~--~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~l   78 (340)
                      -+||..++-....  +..+++++.|    .+.++.++++...-.....     ....+.+ -..++.+...   +...+|
T Consensus       374 ~~PI~D~~v~d~~~~~~~~i~~~sG----~g~~gsL~~lr~Gi~~~~~-----~~~~l~g-v~~iWtl~~~~~~~~~~yL  443 (1158)
T 3ei3_A          374 LGPIVDMCVVDLERQGQGQLVTCSG----AFKEGSLRIIRNGIGIHEH-----ASIDLPG-IKGLWPLRSDPNRETDDTL  443 (1158)
T ss_dssp             CCSEEEEEEECTTSSSCCEEEEEEC----CGGGCEEEEEEESBCEEEE-----EEECCCS-CCEEEEECCCSSCSSCCEE
T ss_pred             cCCceeEEEEccCCCCCCeEEEEEC----cCCCCeEEEEecCCCEEEE-----EeecCCC-ccEEEEEeecCCCCCCCEE
Confidence            4677777765422  2235555555    4567778887665222111     1122332 2445555543   235677


Q ss_pred             EEEecCCCEEEEEecCceeeeeeccccCCCCCCC-CCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccC-ccc
Q 019482           79 VCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA-GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKA-HKS  156 (340)
Q Consensus        79 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~  156 (340)
                      +.+..+.+ .|+.+..... ....   ...+... ..+.+-.+ .++ .++=... ..|++.+......+...... ...
T Consensus       444 vlS~~~~T-~Vl~i~~e~v-eev~---~~gf~~~~~TL~~~~l-~~~-~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~  515 (1158)
T 3ei3_A          444 VLSFVGQT-RVLMLNGEEV-EETE---LMGFVDDQQTFFCGNV-AHQ-QLIQITS-ASVRLVSQEPKALVSEWKEPQAKN  515 (1158)
T ss_dssp             EEEETTEE-EEEEEETTEE-EEEC---CTTCCSSSCEEEEEEE-TTT-EEEEEES-SCEEEEESSSCCEEEEECCTTCCC
T ss_pred             EEECCCCe-EEEEEeCCcc-cccc---cccccCCCCcEEEEEc-CCC-eEEEEec-CEEEEEECCCCeEEEEEECCCCCE
Confidence            77766664 6777644322 1221   1111111 22222222 233 4444443 34778776654445444332 235


Q ss_pred             eeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC----cceEEEEEecC-CcceEEEEEC
Q 019482          157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT----KPFLFCTVQRG-DKALLAVYDI  231 (340)
Q Consensus       157 i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~-~d~~i~i~d~  231 (340)
                      |...+.+  +.+++.++ ++.+.++.+..++............|.|+++.|...    ..+   ++.+. .|++++++++
T Consensus       516 I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~---~aVg~~~d~tv~I~sL  589 (1158)
T 3ei3_A          516 ISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPL---CAIGLWTDISARILKL  589 (1158)
T ss_dssp             CCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSE---EEEEETTTTEEEEEET
T ss_pred             EEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccE---EEEEECCCCEEEEEEC
Confidence            7666655  34566654 678888888766433322223345799999986431    111   45555 4999999999


Q ss_pred             CCCcEEeeeeccC-CCeeEEEEC--CCCCEEEEeeCCCcEEEEecc
Q 019482          232 STWNKIGHKRLLR-KPASVLSIS--LDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       232 ~~~~~~~~~~~~~-~~i~~~~~s--~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      ...+.+....... ....++.+.  ....+|.+|-.||.+.-+.+.
T Consensus       590 ~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          590 PSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             TTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             CCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            9877664433321 233444332  234578889899987665543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.024  Score=46.29  Aligned_cols=141  Identities=12%  Similarity=0.084  Sum_probs=81.8

Q ss_pred             eEEEccCCCcEEEEeCCCCceeeccccCc-cceeEEEe--cC-CCCeEEEe-eCCCeEEEEEccCCeeEEEeecCCCCce
Q 019482          126 RFAAGGVDGHLRIMHWPSLRIILDEPKAH-KSVLDMDF--SL-DSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKI  200 (340)
Q Consensus       126 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~-~~i~~~~~--~~-~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~v  200 (340)
                      .++.++.||.|.-+|.++|+...++.... .++....-  .+ ++..++.. +.||.|..++.++|.....+.....-..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            67888999999999999999888775441 22222110  11 23334343 5899999999988865544432110000


Q ss_pred             eeEEE------------ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCC--C-----eeEEEEC-----CCC
Q 019482          201 ELCRF------------SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRK--P-----ASVLSIS-----LDG  256 (340)
Q Consensus       201 ~~~~~------------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~-----i~~~~~s-----~~~  256 (340)
                      .-+..            +.++.      +++++.++.+...|+++|+.+..+.....  .     ..+....     -.+
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~------Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~  165 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEK------VYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE  165 (339)
T ss_dssp             CSEEEECC----------CCEE------EEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred             cccccCCCceeecccccccCCE------EEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence            11221            12333      68889999999999999999877654321  0     0011110     123


Q ss_pred             CEEEEeeCCCcEEEEe
Q 019482          257 KYLAMGSKDGDICVVD  272 (340)
Q Consensus       257 ~~l~~~~~dg~i~i~d  272 (340)
                      ..++.+..+..+.+.+
T Consensus       166 ~~v~ig~~~y~v~~~~  181 (339)
T 2be1_A          166 NMIVIGKTIFELGIHS  181 (339)
T ss_dssp             CEEEEEEEEEECEECC
T ss_pred             CeEEEecceEEEEEEC
Confidence            5677776666666655

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.60  E-value=0.21  Score=40.37  Aligned_cols=205  Identities=11%  Similarity=0.051  Sum_probs=96.1

Q ss_pred             EEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----CC-------cEEEEeCCCCceeec--cccC
Q 019482           87 CKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DG-------HLRIMHWPSLRIILD--EPKA  153 (340)
Q Consensus        87 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~~~d~~~~~~~~~--~~~~  153 (340)
                      +..||..+.+.........     . ..........++..++.|+.    ++       .+..||..+.+-...  ....
T Consensus        26 ~~~yd~~~~~W~~~~~~~~-----~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~   99 (318)
T 2woz_A           26 AVAYDPMENECYLTALAEQ-----I-PRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA   99 (318)
T ss_dssp             EEEEETTTTEEEEEEECTT-----S-CSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC
T ss_pred             eEEECCCCCceecccCCcc-----C-CccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc
Confidence            7888888776543111100     1 11122233456777777773    12       177888876653321  1111


Q ss_pred             ccceeEEEecCCCCeEEEeeCC-------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC----
Q 019482          154 HKSVLDMDFSLDSEFLATTSTD-------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD----  222 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----  222 (340)
                      ......+.+  +++.++.|+.+       ..+.+||+.+.+-.. +...........+...+++.     .+.++.    
T Consensus       100 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i-----yv~GG~~~~~  171 (318)
T 2woz_A          100 RCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVISHNGMI-----YCLGGKTDDK  171 (318)
T ss_dssp             BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEEETTEE-----EEECCEESSS
T ss_pred             ccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEEECCEE-----EEEcCCCCCC
Confidence            111122222  56777777753       357888887654322 21111111111112234432     233332    


Q ss_pred             --cceEEEEECCCCc--EEeeeeccCCCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeecccccccccceee
Q 019482          223 --KALLAVYDISTWN--KIGHKRLLRKPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRLHLGTSIAL  293 (340)
Q Consensus       223 --d~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~i~~  293 (340)
                        -..+.+||+.+.+  .+............+.  -+++.++.|+.+     ..+.+||+.+.+-........ ...-.+
T Consensus       172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~  248 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSIS  248 (318)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCE
T ss_pred             CccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceE
Confidence              2458899988754  2221211111112222  256777777653     357789988765433221111 111112


Q ss_pred             EEEecCCeEEEEEecC
Q 019482          294 VEFCPTQRVVLTASKE  309 (340)
Q Consensus       294 ~~~~~~~~~l~~~~~d  309 (340)
                      + ...++++++.|+.+
T Consensus       249 ~-~~~~~~i~v~GG~~  263 (318)
T 2woz_A          249 L-VSLAGSLYAIGGFA  263 (318)
T ss_dssp             E-EEETTEEEEECCBC
T ss_pred             E-EEECCEEEEECCee
Confidence            2 23467888888765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.44  E-value=0.083  Score=45.86  Aligned_cols=114  Identities=12%  Similarity=0.017  Sum_probs=72.5

Q ss_pred             cceeEEEecCCCCeEEEee-CCCeEEEEEccCC------ee-------EEEeecCCCCceeeEEEccCCCcceEEEEEec
Q 019482          155 KSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG------VA-------WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      .....+..+|||++++.++ -+.++.++|++.-      +.       ..+..  ..-.....+|.++|..     ..+-
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~a-----YTtl  395 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNA-----YTTL  395 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEE-----EEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCce-----Eeee
Confidence            4556789999999987766 5789999998741      11       22222  2334778999999942     3444


Q ss_pred             CCcceEEEEECCCC----------cEEeeeeccCCCeeEEE------ECCCCCEEEEee---CCCc----------EEEE
Q 019482          221 GDKALLAVYDISTW----------NKIGHKRLLRKPASVLS------ISLDGKYLAMGS---KDGD----------ICVV  271 (340)
Q Consensus       221 ~~d~~i~i~d~~~~----------~~~~~~~~~~~~i~~~~------~s~~~~~l~~~~---~dg~----------i~i~  271 (340)
                      --|.+|.-|++...          ..+..+..|-. +-.+.      -.|+|++|++..   .|+.          -.++
T Consensus       396 fidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~Qli  474 (638)
T 3sbq_A          396 FIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLI  474 (638)
T ss_dssp             TTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEE
T ss_pred             eecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeE
Confidence            57899999998653          23334444432 22232      257899999874   3443          3677


Q ss_pred             eccCc
Q 019482          272 DVKKM  276 (340)
Q Consensus       272 d~~~~  276 (340)
                      |+...
T Consensus       475 dIsGd  479 (638)
T 3sbq_A          475 DISGD  479 (638)
T ss_dssp             ECSSS
T ss_pred             ecCCC
Confidence            77543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.32  E-value=0.4  Score=40.41  Aligned_cols=227  Identities=12%  Similarity=0.062  Sum_probs=133.0

Q ss_pred             CCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCC
Q 019482           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (340)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (340)
                      ...+.+++++.+.      ....+.+   ..+|.--.|-. .+.|+..+... |+-|+++......+....+. .+ ...
T Consensus        85 g~~lQiFnle~K~------klks~~~---~e~VvfWkWis-~~~l~lVT~ta-VyHWsi~~~s~P~kvFdR~~-~L-~~~  151 (494)
T 1bpo_A           85 GKTLQIFNIEMKS------KMKAHTM---TDDVTFWKWIS-LNTVALVTDNA-VYHWSMEGESQPVKMFDRHS-SL-AGC  151 (494)
T ss_dssp             TTEEEEEETTTTE------EEEEEEC---SSCCCEEEEEE-TTEEEEECSSE-EEEEESSSSCCCEEEEECCG-GG-TTC
T ss_pred             CCeEEEEchHHhh------hhcceec---CCCceEEEecC-CCeEEEEcCCe-eEEecccCCCCchhheecch-hc-ccc
Confidence            3458888887321      1111211   34677777753 34566655544 99999976544433332211 11 235


Q ss_pred             CeEEEEEecCCCeEEEcc-------CCCcEEEEeCCCCceeeccccCccceeEEEecCC---CCeEEEeeCC---CeEEE
Q 019482          114 PQKCLSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLD---SEFLATTSTD---GSARI  180 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d---~~v~i  180 (340)
                      .|..-..+++.++++..+       -.|.+.+|..+.+. .+.+.+|......+....+   .+.++.+...   +.++|
T Consensus       152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi  230 (494)
T 1bpo_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI  230 (494)
T ss_dssp             EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEE
T ss_pred             eEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEE
Confidence            677777788888876543       24788999987543 3345555444433333211   1234444432   68888


Q ss_pred             EEccCC---e-----eEEEeec---CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeE
Q 019482          181 WKTEDG---V-----AWTFLTR---NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV  249 (340)
Q Consensus       181 wd~~~~---~-----~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  249 (340)
                      -++...   .     ....+..   ....-.-++..++....     +..-+.-|.|.+||+.++.++..-+....+|..
T Consensus       231 ~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygv-----iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~  305 (494)
T 1bpo_A          231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFV  305 (494)
T ss_dssp             EECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCE-----EEEEecCceEEEEecccceeeeeecccCCceEE
Confidence            888532   1     1111111   11223445666666554     344467789999999999999888877777776


Q ss_pred             EEECCCCCEEEEeeCCCcEEEEeccCceEe
Q 019482          250 LSISLDGKYLAMGSKDGDICVVDVKKMEIN  279 (340)
Q Consensus       250 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  279 (340)
                      .+-+....=++.....|.|.-..+.....+
T Consensus       306 t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          306 TAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             ecccCCCCcEEEEccCceEEEEEEccccch
Confidence            666665555666668888877776665443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.08  E-value=0.82  Score=41.67  Aligned_cols=108  Identities=11%  Similarity=0.059  Sum_probs=62.3

Q ss_pred             CCCeEEEEecC------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC--cEEEEeCCCCc
Q 019482           74 SGDDFVCSTTN------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG--HLRIMHWPSLR  145 (340)
Q Consensus        74 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~~  145 (340)
                      ++..++.|+.+      ..+.+||..+......-      .......-.+++...+++.++.|+.++  .+.+||..+..
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~------~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~  524 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIK------SLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI  524 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECC------CCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECC------CCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence            67777777754      35788888776543221      111111112333324778888887654  68999988765


Q ss_pred             eeecc-----ccCccceeEEEecCC-CCeEEEeeC--C-----CeEEEEEccCCe
Q 019482          146 IILDE-----PKAHKSVLDMDFSLD-SEFLATTST--D-----GSARIWKTEDGV  187 (340)
Q Consensus       146 ~~~~~-----~~~~~~i~~~~~~~~-~~~l~~~~~--d-----~~v~iwd~~~~~  187 (340)
                      -....     .........+.+..+ ++.++.|+.  +     ..+.+||+.+.+
T Consensus       525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            43221     111122233555654 667777765  2     468899998776

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.59  E-value=1.1  Score=39.23  Aligned_cols=241  Identities=12%  Similarity=0.090  Sum_probs=131.5

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCC------------------CCCCe--EEEEEec---CCCeEEEcc-C
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ------------------DAGPQ--KCLSFSV---DGSRFAAGG-V  132 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~------------------~~~~v--~~~~~~~---~~~~l~~~~-~  132 (340)
                      -|.+|+..|.++|+-+-+.+....+..-...+..                  ..+-.  ..+++..   ||++|+.-. .
T Consensus        72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka  151 (638)
T 3sbq_A           72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA  151 (638)
T ss_dssp             EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence            3568888999999999888765443211100000                  01111  1233332   677777765 3


Q ss_pred             CCcEEEEeCCCCceeecccc-CccceeEEEec--CCCCeEEEeeC-------CCeE---------EE---EEccCCeeEE
Q 019482          133 DGHLRIMHWPSLRIILDEPK-AHKSVLDMDFS--LDSEFLATTST-------DGSA---------RI---WKTEDGVAWT  190 (340)
Q Consensus       133 dg~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~l~~~~~-------d~~v---------~i---wd~~~~~~~~  190 (340)
                      +..|...+++..++-..+.- ....+..+.|.  |+..+++.++.       ||..         .+   .|..+.+...
T Consensus       152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            56677788887765443322 23467778875  67777777653       2221         11   2223333322


Q ss_pred             EeecCCCCceeeEEEccCCCcceEEEE----------EecCCcc-------------------------eEEEEECCC--
Q 019482          191 FLTRNSDEKIELCRFSKDGTKPFLFCT----------VQRGDKA-------------------------LLAVYDIST--  233 (340)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~~~d~-------------------------~i~i~d~~~--  233 (340)
                      ++.-  .+....+...+++++.+..+.          .+.++..                         .+.+.|.+.  
T Consensus       232 Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~  309 (638)
T 3sbq_A          232 QVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD  309 (638)
T ss_dssp             EEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred             EEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence            2221  122334455666665322110          0011111                         244555544  


Q ss_pred             --CcEEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceE-----e-e---c-ccccccccceeeEEEecCC
Q 019482          234 --WNKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEI-----N-H---W-SKRLHLGTSIALVEFCPTQ  300 (340)
Q Consensus       234 --~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~-----~-~---~-~~~~~~~~~i~~~~~~~~~  300 (340)
                        +..+..+..-......+..+|||+++++++. +.++.++|++....     + .   . ......+-.....+|.++|
T Consensus       310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G  389 (638)
T 3sbq_A          310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG  389 (638)
T ss_dssp             TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS
T ss_pred             ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC
Confidence              2222222222334567899999999988764 78899999985221     0 0   0 0011124467788999999


Q ss_pred             eEEEEEecCCcEEEEEecC
Q 019482          301 RVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       301 ~~l~~~~~dg~i~iw~~~~  319 (340)
                      ....+.--|..|.-|++..
T Consensus       390 ~aYTtlfidSqvvkWni~~  408 (638)
T 3sbq_A          390 NAYTTLFIDSQVVKWNMEE  408 (638)
T ss_dssp             EEEEEETTTTEEEEEEHHH
T ss_pred             ceEeeeeecceEEEEeccH
Confidence            7777777899999999975

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=93.52  E-value=4.3  Score=36.99  Aligned_cols=200  Identities=11%  Similarity=0.043  Sum_probs=103.3

Q ss_pred             EEEE-EecCCCeEEEcc-----CCCcEEEEeCCCCceeeccccCc--c------ceeEEEecCCCCeEEEee--------
Q 019482          116 KCLS-FSVDGSRFAAGG-----VDGHLRIMHWPSLRIILDEPKAH--K------SVLDMDFSLDSEFLATTS--------  173 (340)
Q Consensus       116 ~~~~-~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~~~~~~~~--~------~i~~~~~~~~~~~l~~~~--------  173 (340)
                      ..+. ++|++++++.+-     .-..++++|+.+++.+..-....  .      ....++|..+...+++..        
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence            3444 788888766542     22469999999988664322211  1      123447764444444321        


Q ss_pred             --CCCeEEEEEccCCe--eEEEeecCCCCceeeEEEccCCCcc--eEEEEEe-cCCcceEEEEECCCCc-EEeeeeccCC
Q 019482          174 --TDGSARIWKTEDGV--AWTFLTRNSDEKIELCRFSKDGTKP--FLFCTVQ-RGDKALLAVYDISTWN-KIGHKRLLRK  245 (340)
Q Consensus       174 --~d~~v~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~~~d~~i~i~d~~~~~-~~~~~~~~~~  245 (340)
                        ....|+.|.+-+..  -...+.......-.....++++.+.  +++.... ......+.+.|..... ....+.....
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  291 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD  291 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence              12468888775542  2223332222223345567777753  1211112 3344677777765421 2222222221


Q ss_pred             CeeEEEECCCCCEEEEee----------CCCcEEEEeccCceE-------eecccccccccceeeEEEecCCeEEEEEec
Q 019482          246 PASVLSISLDGKYLAMGS----------KDGDICVVDVKKMEI-------NHWSKRLHLGTSIALVEFCPTQRVVLTASK  308 (340)
Q Consensus       246 ~i~~~~~s~~~~~l~~~~----------~dg~i~i~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  308 (340)
                        ..+..++++.+++...          ..+.|...|+.+...       ...+........+.++.|..+ .++++...
T Consensus       292 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~  368 (711)
T 4hvt_A          292 --ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD  368 (711)
T ss_dssp             --CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred             --ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence              1233445665555331          367799999876421       111111222457888999876 67777778


Q ss_pred             CCcEEEEEec
Q 019482          309 EWGAMITKLT  318 (340)
Q Consensus       309 dg~i~iw~~~  318 (340)
                      ++.-+++-++
T Consensus       369 ~~~~~l~~~~  378 (711)
T 4hvt_A          369 NVVAKVVTFT  378 (711)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCEEEEEEEE
Confidence            8765554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.27  E-value=1.9  Score=42.31  Aligned_cols=161  Identities=11%  Similarity=0.090  Sum_probs=91.6

Q ss_pred             EEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEc--CC-CCeEEEEec---CCCEEEEEecC
Q 019482           21 LVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVN--PS-GDDFVCSTT---NGGCKLFEVYG   94 (340)
Q Consensus        21 ~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~-~~~l~~~~~---d~~i~iw~~~~   94 (340)
                      ++++|-....+...|.+.+|+.+....         ..++||-..-..+...  +. ...++.+..   .+.++|-++..
T Consensus       165 ~~l~gi~~~~~~v~G~mQLyS~er~~s---------Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          165 LLLTGISAQQNRVVGAMQLYSVDRKVS---------QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT  235 (1630)
T ss_pred             EEEEeeccCCCcccceeeeeecccccc---------hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence            344444434445778899999874332         3355565444333332  11 123333322   25788888854


Q ss_pred             c-eeeeeeccc----cCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeE
Q 019482           95 G-ATDINLLAK----KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFL  169 (340)
Q Consensus        95 ~-~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  169 (340)
                      . .....+..+    ..++....+-..++..++.-..+...+.-|.|.+||++++.++..-+-....|...+-+....-+
T Consensus       236 ~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~  315 (1630)
T 1xi4_A          236 PPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI  315 (1630)
T ss_pred             CccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCce
Confidence            3 111111100    11111123445677888877788888899999999999999887665555566665555444445


Q ss_pred             EEeeCCCeEEEEEccCCeeEE
Q 019482          170 ATTSTDGSARIWKTEDGVAWT  190 (340)
Q Consensus       170 ~~~~~d~~v~iwd~~~~~~~~  190 (340)
                      +.....|.|.--.+.....+.
T Consensus       316 ~~vnr~G~vl~v~v~~~~iv~  336 (1630)
T 1xi4_A          316 IGVNRKGQVLSVCVEEENIIP  336 (1630)
T ss_pred             EEEcCCceEEEEEEccchhhh
Confidence            555677777776666554443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.17  E-value=2.6  Score=33.39  Aligned_cols=223  Identities=9%  Similarity=-0.030  Sum_probs=112.1

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      .|..++.... ..++. . ||.|+.|-.........       +......|..++...+. .++. . ||.|+.|-....
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~-------p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~   91 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTM-------PAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNED   91 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSC-------CGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTT
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCC-------CccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCC
Confidence            5777776432 22333 4 88888887654322111       01122356666665433 3333 4 899999975532


Q ss_pred             ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      ..+-.-......|..++...+.  .+.-. ||.|+.|-......+. +.......|..++......      ++. . |+
T Consensus        92 Gqlg~P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~~~------~~l-~-~G  159 (282)
T 3qhy_B           92 GQTTVPAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVYTA------LAV-K-NG  159 (282)
T ss_dssp             STTCCCGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE------EEE-E-TT
T ss_pred             CCCCCCcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccCEE------EEE-E-CC
Confidence            2211111112367777766433  33334 8999999765422211 1111223465665543322      222 2 68


Q ss_pred             eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEE
Q 019482          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVL  304 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  304 (340)
                      .+..|-......+.........|..++...+. .++.  .||.|+.|-......+-.... . ...|..++-..+...++
T Consensus       160 ~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~-~-~~~v~~i~~G~~h~~al  234 (282)
T 3qhy_B          160 GVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTE-A-LSGVSAIASGEWYSLAL  234 (282)
T ss_dssp             EEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGG-G-GSSCCEEEECSSCEEEE
T ss_pred             EEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcc-c-CCCceEEEcCCCEEEEE
Confidence            89988766432222111223456666654432 2333  589999996544222111111 1 23577776654433333


Q ss_pred             EEecCCcEEEEEecCC
Q 019482          305 TASKEWGAMITKLTVP  320 (340)
Q Consensus       305 ~~~~dg~i~iw~~~~~  320 (340)
                      +   ||.++.|=....
T Consensus       235 ~---~g~v~~wG~n~~  247 (282)
T 3qhy_B          235 K---NGKVIAWGSSRT  247 (282)
T ss_dssp             E---TTEEEEESTTCC
T ss_pred             E---CCEEEEecCCCC
Confidence            3   888888866543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=92.86  E-value=4.1  Score=34.92  Aligned_cols=19  Identities=11%  Similarity=-0.062  Sum_probs=15.6

Q ss_pred             CCeeEEEECCCCCEEEEee
Q 019482          245 KPASVLSISLDGKYLAMGS  263 (340)
Q Consensus       245 ~~i~~~~~s~~~~~l~~~~  263 (340)
                      ..+..+...|||.++++..
T Consensus       336 ~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          336 GHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SEEEEEEECTTCCEEEEEE
T ss_pred             CcceEEEECCCCCEEEEec
Confidence            4688999999998877765

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.44  E-value=15  Score=34.92  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=33.0

Q ss_pred             ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee
Q 019482          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  193 (340)
                      .+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677778888899999999999999999999988764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=89.38  E-value=8.4  Score=32.02  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=67.2

Q ss_pred             CCCeeEEEEcC-CCCeEEEEecCC--CEEEEEecCceeeeeecccc--CCCCC------CCCCeEEEEEec-C-CCeEEE
Q 019482           63 EGDPMTIAVNP-SGDDFVCSTTNG--GCKLFEVYGGATDINLLAKK--MPPLQ------DAGPQKCLSFSV-D-GSRFAA  129 (340)
Q Consensus        63 ~~~v~~~~~~~-~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~--~~~~~------~~~~v~~~~~~~-~-~~~l~~  129 (340)
                      ...|.+|++.| +...|.++...+  .-.||....+..........  .....      ....|.++++.| + ...+.+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            34699999998 333444444443  11344443322211111111  00000      113577899987 2 456666


Q ss_pred             ccCCCcEEEEeCCCCc---eeeccc----------------cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeE
Q 019482          130 GGVDGHLRIMHWPSLR---IILDEP----------------KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       130 ~~~dg~i~~~d~~~~~---~~~~~~----------------~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                      +...+.|...+ ..++   .+....                .....+.+|.++| +...+..+..++.|...+ ..++..
T Consensus       134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW  211 (394)
T 3b7f_A          134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDW  211 (394)
T ss_dssp             EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSC
T ss_pred             EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCc
Confidence            65566555443 2222   221110                0123578899988 344555554445444332 223332


Q ss_pred             EEeecCC------------CCceeeEEEccCC
Q 019482          190 TFLTRNS------------DEKIELCRFSKDG  209 (340)
Q Consensus       190 ~~~~~~~------------~~~v~~~~~~~~~  209 (340)
                      ..+....            ...+.++.+.|..
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~  243 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAA  243 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSS
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCC
Confidence            2222100            1247888998864

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=87.52  E-value=11  Score=31.28  Aligned_cols=185  Identities=9%  Similarity=-0.004  Sum_probs=91.0

Q ss_pred             CCeEEEccCCCcEEEEeCCCCc-----------eeeccccC-ccceeEEEecCCCCeEEEeeCCCeEEEEEccCC-----
Q 019482          124 GSRFAAGGVDGHLRIMHWPSLR-----------IILDEPKA-HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDG-----  186 (340)
Q Consensus       124 ~~~l~~~~~dg~i~~~d~~~~~-----------~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~-----  186 (340)
                      ....+.-..||.|..|-.....           ....+... ...+..++++......+.-..||.|+.|-....     
T Consensus        62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~  141 (389)
T 3kci_A           62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH  141 (389)
T ss_dssp             TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred             CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence            3344555678888888543211           11111111 123445666665666666678999999965321     


Q ss_pred             ------eeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC-c--------E--Eeeee-ccCCCee
Q 019482          187 ------VAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW-N--------K--IGHKR-LLRKPAS  248 (340)
Q Consensus       187 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~--------~--~~~~~-~~~~~i~  248 (340)
                            .....+.......|..++....  +     .+.-..++.|..|-.... +        .  ..... .....+.
T Consensus       142 g~~~~~~~p~~v~~l~~~~i~~va~G~~--h-----s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~  214 (389)
T 3kci_A          142 GNRSPCDRPRVIESLRGIEVVDVAAGGA--H-----SACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV  214 (389)
T ss_dssp             SSCCCEEEEEECGGGTTSCEEEEEECSS--E-----EEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred             CCCccCcCCeEecccCCCeEEEEEeCcC--e-----EEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence                  0111111111223555544332  2     233345788888875421 0        0  11111 1123466


Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeccCc-----------eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          249 VLSISLDGKYLAMGSKDGDICVVDVKKM-----------EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       249 ~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      .++......+.++...||.|+.|-....           .....+.... ...|..++...  ...+.-..||.++.|=.
T Consensus       215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~-~~~v~~v~~G~--~hs~alt~~G~v~~wG~  291 (389)
T 3kci_A          215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT-GLGVVKVECGS--QFSVALTKSGAVYTWGK  291 (389)
T ss_dssp             EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT-TSCEEEEEEET--TEEEEEETTSCEEEEEC
T ss_pred             EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC-CCcEEEEeCCC--CEEEEEeCCCeEEEEeC
Confidence            6665443356666678999999954321           1111111111 22455555543  33444467888888865


Q ss_pred             c
Q 019482          318 T  318 (340)
Q Consensus       318 ~  318 (340)
                      .
T Consensus       292 n  292 (389)
T 3kci_A          292 G  292 (389)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=87.29  E-value=9.4  Score=30.12  Aligned_cols=185  Identities=11%  Similarity=0.020  Sum_probs=94.8

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      .|..++.... ..++. . ||.|..|-.........       +..-...|..++...+.  .+.-. ||.|+.|-....
T Consensus        64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~-------P~~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~  130 (282)
T 3qhy_B           64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTV-------PAEARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSD  130 (282)
T ss_dssp             CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCC-------CGGGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTT
T ss_pred             CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCC-------CcccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCC
Confidence            5777776533 23333 4 88888887654322111       11122467777765443  33334 899999976543


Q ss_pred             ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      ..+.........|..++...+.. ++ -. ||.|+.|-......+. ........|..++......      ++.  .++
T Consensus       131 gqlg~~~~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i~~G~~hs------~al--~~G  198 (282)
T 3qhy_B          131 GQTTVPAEAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDVAGGIFHS------LAL--KDG  198 (282)
T ss_dssp             STTSCCGGGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSSEE------EEE--ETT
T ss_pred             CcCCCCccCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-CceecCCCeEEEEecCCEE------EEE--ECC
Confidence            22211111223576666553332 22 23 7999999765422211 1111123466665544332      233  488


Q ss_pred             eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      .+..|-......+..-......|..++..... .++. . ||.|+.|-.....
T Consensus       199 ~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG~n~~g  248 (282)
T 3qhy_B          199 KVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVIAWGSSRTA  248 (282)
T ss_dssp             EEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEEEESTTCCC
T ss_pred             eEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE-E-CCEEEEecCCCCc
Confidence            99999765432221111122356666654433 3333 3 8999999765543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.23  E-value=23  Score=34.47  Aligned_cols=38  Identities=13%  Similarity=0.131  Sum_probs=32.0

Q ss_pred             ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee
Q 019482          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT  193 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~  193 (340)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            34556667788899999999999999999999988764

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=86.84  E-value=11  Score=30.34  Aligned_cols=196  Identities=14%  Similarity=0.061  Sum_probs=106.0

Q ss_pred             CCCCeEEEEecCCCEEEEEecCceeeeee-ccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC---CC----
Q 019482           73 PSGDDFVCSTTNGGCKLFEVYGGATDINL-LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP---SL----  144 (340)
Q Consensus        73 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~---~~----  144 (340)
                      |+..++++.+.+|.|+--.+..-+....- .......+.....+..+........++..+..|.++-+...   ..    
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~   85 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS   85 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence            45667888999999988776543321110 00001112234556665555556677777888987666542   21    


Q ss_pred             --ceeeccc--cCccceeEEEecC---CCCeEEEeeCCCeEEEEEccC-------CeeEEEeecCCCCceeeEEEccCCC
Q 019482          145 --RIILDEP--KAHKSVLDMDFSL---DSEFLATTSTDGSARIWKTED-------GVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       145 --~~~~~~~--~~~~~i~~~~~~~---~~~~l~~~~~d~~v~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                        ..+....  ...+.|..+...+   +..+++..+..|.++.-.+..       |.....+.  ....+-.+....+..
T Consensus        86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~--~~d~lv~~~~~~~~~  163 (312)
T 1suu_A           86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN--DKDFVTSAEIVFKDE  163 (312)
T ss_dssp             --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC--TTCCEEEEEEECTTC
T ss_pred             CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC--CCCEEEEEEEeCCCC
Confidence              1111111  1223454443332   456788888999999888753       22222222  233455554444334


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcE-------Eeeeec-cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNK-------IGHKRL-LRKPASVLSISLDGKYLAMGSKDGDICVVDVKK  275 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~  275 (340)
                      .     ++..+.+|.+..+....-..       +..+.. ....+..+..-.++..+++.+..|..+..++..
T Consensus       164 ~-----i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          164 K-----VICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             E-----EEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             E-----EEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            3     45556677777777643111       111111 134556665555667788889999999988754

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=84.87  E-value=3  Score=36.91  Aligned_cols=59  Identities=17%  Similarity=0.316  Sum_probs=41.9

Q ss_pred             eeEEEECCCCCEEEEeeCC------------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482          247 ASVLSISLDGKYLAMGSKD------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (340)
Q Consensus       247 i~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  306 (340)
                      .-.|+|+|.|++++.-..+            +.+.+.+..+++..+.+. ...+..++.++|+||++.|+..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~-~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe-CCCCccCcCeeECCCCCEEEEE
Confidence            3568999999876654322            345666777777665553 4447899999999999877665

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=84.53  E-value=15  Score=29.80  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=72.0

Q ss_pred             CCeeEE-EEcC--CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           64 GDPMTI-AVNP--SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        64 ~~v~~~-~~~~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      ..|.++ ....  +..+++..+.+|.++--.+........ .......+...+.+..+........|+..+..|.+..+.
T Consensus        95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r-~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~  173 (327)
T 3uc1_A           95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS-GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFS  173 (327)
T ss_dssp             CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS-SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred             CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc-CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence            445554 3432  577999999999999888765432211 111111122345666666555566788888899888777


Q ss_pred             CC--CCc---------eeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEcc
Q 019482          141 WP--SLR---------IILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTE  184 (340)
Q Consensus       141 ~~--~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~  184 (340)
                      ..  .-.         ....+ ...+.|.++...+++..++..+..|.++.-.+.
T Consensus       174 ~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~  227 (327)
T 3uc1_A          174 ATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIE  227 (327)
T ss_dssp             CCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             CcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHH
Confidence            65  211         11112 223456666665566678888889998888764

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=84.50  E-value=16  Score=30.28  Aligned_cols=169  Identities=5%  Similarity=-0.053  Sum_probs=86.8

Q ss_pred             cEEEEeCCCC--ceeeccccC------ccceeEEEec---CC----CCeEEEee-CCCeEEEEEccCCeeEEEeec----
Q 019482          135 HLRIMHWPSL--RIILDEPKA------HKSVLDMDFS---LD----SEFLATTS-TDGSARIWKTEDGVAWTFLTR----  194 (340)
Q Consensus       135 ~i~~~d~~~~--~~~~~~~~~------~~~i~~~~~~---~~----~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~----  194 (340)
                      +|.+||+.+.  +.+.++.-.      ...+..+.+.   |+    +.++..+. ....|.++|+.+++..+.+..    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5778888887  665543321      2357777777   22    23333333 467899999998877655421    


Q ss_pred             CC-------------CCceeeEEEccC----CCcceEEEEEecCCcceEEEEE---CCCC---cEEeeeecc--CCCeeE
Q 019482          195 NS-------------DEKIELCRFSKD----GTKPFLFCTVQRGDKALLAVYD---ISTW---NKIGHKRLL--RKPASV  249 (340)
Q Consensus       195 ~~-------------~~~v~~~~~~~~----~~~~~~~~~~~~~~d~~i~i~d---~~~~---~~~~~~~~~--~~~i~~  249 (340)
                      ..             ...+..++++|+    ++.+++. -++ +  ..+.--.   ++..   ..+..+-..  ...-..
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~-pls-s--~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~  279 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYL-AGS-A--IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA  279 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEE-ESS-C--SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEE-ECC-C--CcEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence            00             124667788877    4443321 111 1  1111111   1111   111111111  123345


Q ss_pred             EEEC-CCCCEEEEeeCCCcEEEEeccC-c---eEeecccccccccceeeEEEecCCeEEEEEe
Q 019482          250 LSIS-LDGKYLAMGSKDGDICVVDVKK-M---EINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       250 ~~~s-~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      +++. .+|.++++--..+.|..|+..+ .   +....+.....-.....+++.++|.+.+..+
T Consensus       280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence            6675 5777777777788999999875 1   1111111111123466777766766555543

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=82.99  E-value=15  Score=28.83  Aligned_cols=196  Identities=10%  Similarity=-0.018  Sum_probs=102.7

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEE---eCCCCceeeccccCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCe-
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIM---HWPSLRIILDEPKAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGV-  187 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~---d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~-  187 (340)
                      +.+..+.-.....+|+.-+.+|.++-.   +++...... +....+.|..+.... +..+++..+.+|.++-..+..-. 
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~  102 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY  102 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence            344444444444455555667765543   333221111 122344566554421 46789999999999999876432 


Q ss_pred             ---eEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC---------CcEEeeeeccCCCeeEEEECCC
Q 019482          188 ---AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST---------WNKIGHKRLLRKPASVLSISLD  255 (340)
Q Consensus       188 ---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~s~~  255 (340)
                         -+..+....+..+..+........     ++..+..|.+..++...         |...-.+. .+..+..+...++
T Consensus       103 ~~~G~~~i~lkegD~l~~~~~~~~~~~-----ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~  176 (276)
T 3no0_A          103 KAQGMPIIKLTEGDEVVSIASSVDETH-----ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNG  176 (276)
T ss_dssp             CSTTEECSCCCTTCCEEEEEECCSSCE-----EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESS
T ss_pred             hcCCeEEEecCCCCEEEEEEEeCCCCE-----EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCC
Confidence               111111112234444444444433     34445567666665432         11111111 1245655555556


Q ss_pred             CCEEEEeeCCCcEEEEeccCceE-------eecccccccccceeeEEEecCCeEEEEEecCCcEEE--EEec
Q 019482          256 GKYLAMGSKDGDICVVDVKKMEI-------NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI--TKLT  318 (340)
Q Consensus       256 ~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i--w~~~  318 (340)
                      +.+++..+..|.++...+.....       ...+.  . +..+..+....+...++..+.+|.+..  ++..
T Consensus       177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~--~-~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~  245 (276)
T 3no0_A          177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG--T-KDTLVDLIPIKEEVELLITTKNGKAFYDKINQK  245 (276)
T ss_dssp             CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC--S-SSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred             CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc--C-CCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence            67888999999999888754222       12221  1 344555544444456777777888776  6654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=81.87  E-value=6.8  Score=34.43  Aligned_cols=61  Identities=15%  Similarity=0.285  Sum_probs=42.4

Q ss_pred             CeeEEEECCCCCEEEEeeC------------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482          246 PASVLSISLDGKYLAMGSK------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       246 ~i~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      ....|.|+++|.+.+....            .+.+..++..+++....+. ......++.++|+||++.|+.+-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-CCCCccccCCEECCCCCEEEEEE
Confidence            4567999999987774321            2257777777777665542 22245789999999998877664

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=81.22  E-value=32  Score=31.36  Aligned_cols=238  Identities=8%  Similarity=-0.059  Sum_probs=115.6

Q ss_pred             eeEEE-EcCCCCeEEEEec-C----CCEEEEEecCceeeeeeccccCCCCCCC-----CCeEEEEEecCCCeEEEc----
Q 019482           66 PMTIA-VNPSGDDFVCSTT-N----GGCKLFEVYGGATDINLLAKKMPPLQDA-----GPQKCLSFSVDGSRFAAG----  130 (340)
Q Consensus        66 v~~~~-~~~~~~~l~~~~~-d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~----  130 (340)
                      ...+. ++|++++++.+-. .    ..++++|+.+++....-....    ...     .....++|..+..++++.    
T Consensus       131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~----~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~  206 (711)
T 4hvt_A          131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPI----TNSGKLLEGKFTYPTWINKDTIIFNLVLHK  206 (711)
T ss_dssp             EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCB----CTTCCBCCEETCCEEEEETTEEEECCCCST
T ss_pred             EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccc----cccccccccccceeeEECCCEEEEEeCCCC
Confidence            34455 8999998775422 2    389999999887653221100    000     011334776444344431    


Q ss_pred             ------cCCCcEEEEeCCCCc--eeeccccCccc-eeEEEecCCCCe-----EEEeeCC---CeEEEEEccC--CeeEEE
Q 019482          131 ------GVDGHLRIMHWPSLR--IILDEPKAHKS-VLDMDFSLDSEF-----LATTSTD---GSARIWKTED--GVAWTF  191 (340)
Q Consensus       131 ------~~dg~i~~~d~~~~~--~~~~~~~~~~~-i~~~~~~~~~~~-----l~~~~~d---~~v~iwd~~~--~~~~~~  191 (340)
                            +....|+.|.+-+..  -...+...... -.....++++++     +++.+.+   ..+.+.+...  ++ +..
T Consensus       207 ~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~  285 (711)
T 4hvt_A          207 NEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQK  285 (711)
T ss_dssp             TCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEE
T ss_pred             CCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceE
Confidence                  112468888776542  11222222222 223445666653     4443322   4566666543  33 233


Q ss_pred             eecCCCCceeeEEEccCCCcceEEEEEec---------CCcceEEEEECCCCc-------EEee-e-eccCCCeeEEEEC
Q 019482          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQR---------GDKALLAVYDISTWN-------KIGH-K-RLLRKPASVLSIS  253 (340)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------~~d~~i~i~d~~~~~-------~~~~-~-~~~~~~i~~~~~s  253 (340)
                      +......   .+..+.++.. +   +.+.         ...+.|...|+.++.       .... + ......+..+.|.
T Consensus       286 l~~~~~~---~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  358 (711)
T 4hvt_A          286 INMPSDA---TLQGSFKEYV-F---WLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTT  358 (711)
T ss_dssp             CCSCTTC---EEEEEETTEE-E---EECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEEC
T ss_pred             eecCCcc---eEeeeECCEE-E---EEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEE
Confidence            3222221   2233445542 1   1111         146678899987642       1112 2 2233457788888


Q ss_pred             CCCCEEEEeeCCC--cEEEEeccCceE-eec-ccccccccceeeEEEecCCe-EEEEEecC---CcEEEEEe
Q 019482          254 LDGKYLAMGSKDG--DICVVDVKKMEI-NHW-SKRLHLGTSIALVEFCPTQR-VVLTASKE---WGAMITKL  317 (340)
Q Consensus       254 ~~~~~l~~~~~dg--~i~i~d~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~~-~l~~~~~d---g~i~iw~~  317 (340)
                      .+ .++++...++  .|.++|+.+++. ... +.... ...+.....++++. ++++.+..   +.+..+++
T Consensus       359 ~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~  428 (711)
T 4hvt_A          359 KD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK  428 (711)
T ss_dssp             SS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             CC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence            76 5667776776  467788776641 222 21111 13465666666664 44443332   34444443

>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*

Probab=80.37  E-value=30  Score=30.40  Aligned_cols=187  Identities=12%  Similarity=0.099  Sum_probs=93.8

Q ss_pred             CEEEEEecCceeeeeec-cccCCCCCCCCCeEEEEEecCCC-eEEEccCCCc----------------------------
Q 019482           86 GCKLFEVYGGATDINLL-AKKMPPLQDAGPQKCLSFSVDGS-RFAAGGVDGH----------------------------  135 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~----------------------------  135 (340)
                      .|.+|+++. +...++. ......-.|...+....|.-||+ -++....+|+                            
T Consensus       152 ~l~aY~ldG-~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEy  230 (591)
T 2zux_A          152 LIDAYKLDG-TKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEY  230 (591)
T ss_dssp             EEEEECTTS-CEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCE
T ss_pred             EEEEEECCC-CEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcE
Confidence            466777753 3333332 11222222455677777777775 4555544444                            


Q ss_pred             EEEEeCCCCceeeccccC--ccc---------------eeEEEec-CCCCeEEEee---CCCeEEEEEccCCeeEEEeec
Q 019482          136 LRIMHWPSLRIILDEPKA--HKS---------------VLDMDFS-LDSEFLATTS---TDGSARIWKTEDGVAWTFLTR  194 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~--~~~---------------i~~~~~~-~~~~~l~~~~---~d~~v~iwd~~~~~~~~~~~~  194 (340)
                      +.++|=.+++.+....-.  ...               ..++++- -+...++.+-   .-..|..||.+.++....+..
T Consensus       231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~  310 (591)
T 2zux_A          231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL  310 (591)
T ss_dssp             EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred             EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence            778887777766543221  111               1223321 1212233332   123588899988876544432


Q ss_pred             CCC------------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC--CCEEE
Q 019482          195 NSD------------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD--GKYLA  260 (340)
Q Consensus       195 ~~~------------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~  260 (340)
                      ...            ..+.-..+.-||+.-+++....-..||++ +|...        ..|...+....|.|+  |..++
T Consensus       311 d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st~--------~gHGDa~hv~dldP~r~GlEv~  381 (591)
T 2zux_A          311 DSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYSTG--------LGHGDALHTGDLDPGRPGLEVF  381 (591)
T ss_dssp             ETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEECS--------CCCCSCEEEECCCTTSSSCEEE
T ss_pred             cCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeCC--------CCCCCeeEEeecCCCCCCcEEE
Confidence            111            23444555566665322211122233333 44432        256666677777776  45666


Q ss_pred             EeeCCC----cEEEEeccCceEeecc
Q 019482          261 MGSKDG----DICVVDVKKMEINHWS  282 (340)
Q Consensus       261 ~~~~dg----~i~i~d~~~~~~~~~~  282 (340)
                      .+.+++    -..+.|..+++.+...
T Consensus       382 ~~~E~~~~~~G~~~~dA~tG~vlw~~  407 (591)
T 2zux_A          382 QVHEDKNAKYGLSFRDAATGKILWGV  407 (591)
T ss_dssp             EECCCTTSSCSEEEEETTTCCEEEEE
T ss_pred             EEecCCCCCCccEEEECCCCcEEEEc
Confidence            665542    3556788888877554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.6 bits (153), Expect = 6e-12
 Identities = 25/125 (20%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
             F   E D   I   P+G+ F   + +  C+LF++      +                 
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-----YSHDNIICGIT 274

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
            +SFS  G    AG  D +  +                  V  +  + D   +AT S D 
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334

Query: 177 SARIW 181
             +IW
Sbjct: 335 FLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.4 bits (129), Expect = 6e-09
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT 183
              F +G  D   ++                  +  + F  +    AT S D + R++  
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 184 EDGVAWTFLTRNSDEK-IELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL 242
                    + ++    I    FSK G    L       D     V+D    ++ G    
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSG--RLLLAG---YDDFNCNVWDALKADRAGVLAG 310

Query: 243 LRKPASVLSISLDGKYLAMGSKDGDICVVD 272
                S L ++ DG  +A GS D  + + +
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.2 bits (126), Expect = 1e-08
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 3/100 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA 170
                + F  +G+ FA G  D   R+  +      +          +  + FS     L 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286

Query: 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
               D +  +W          L  + +  +     + DG 
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGM 325

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.9 bits (120), Expect = 7e-08
 Identities = 28/234 (11%), Positives = 58/234 (24%), Gaps = 39/234 (16%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
                + +  D     +   DG L I    +   +   P     V+   ++    ++A  
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115

Query: 173 STDGSARIW------------KTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT--- 217
             D    I+            +   G           +  ++   S D T          
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175

Query: 218 ------------------------VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS 253
                                   V     A   ++D+                + +   
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235

Query: 254 LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307
            +G   A GS D    + D++  +        ++   I  V F  + R++L   
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 28/175 (16%), Positives = 53/175 (30%), Gaps = 6/175 (3%)

Query: 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192
           D    +    + +           V+ +  + D+    + + D SA++W   +G+     
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222

Query: 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252
           T +  + I    F  +G     F T        L                +    + +S 
Sbjct: 223 TGHESD-INAICFFPNGN---AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278

Query: 253 SLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307
           S  G+ L  G  D +  V D  K +        H    ++ +        V T S
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAG-HDN-RVSCLGVTDDGMAVATGS 331

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 54/225 (24%)

Query: 64  GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD 123
           G          G      + +   ++++   G     L ++             + F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 124 GSRFAAGGVDGHLRIMHWPSLRIILDEPKAH------------KSVLDMDFSLDSEFLAT 171
           G    +G +D  +++ +  +     D    +              VL +  + + E++ +
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
            S D     W  + G     L  + +                             +V  +
Sbjct: 326 GSKDRGVLFWDKKSGNPLLMLQGHRN-----------------------------SVISV 356

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276
           +  N               S+  +    A GS D    +   KK+
Sbjct: 357 AVANGS-------------SLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 7e-08
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 11/133 (8%)

Query: 63  EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK-----KMPPLQDAGPQKC 117
           +    ++     G   V  + +   KL+ +       +         ++  +        
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 118 LSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD------FSLDSEFLAT 171
           ++ + +     +G  D  +      S   +L       SV+ +          +    AT
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 172 TSTDGSARIWKTE 184
            S D  ARIWK +
Sbjct: 374 GSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 6e-06
 Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 49/207 (23%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS------LRIILDEPKAHK-SVLDMDFSLD 165
           G         DG   AAG +D  +R+    +      L    +    HK SV  + F+ D
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265

Query: 166 SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL 225
            + + + S D S ++W  ++                                        
Sbjct: 266 GQSVVSGSLDRSVKLWNLQNA------------------------------------NNK 289

Query: 226 LAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRL 285
                 ++          +     ++ + + +Y+  GSKD  +   D K         + 
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-MLQG 348

Query: 286 HLGTSIAL-----VEFCPTQRVVLTAS 307
           H  + I++         P   V  T S
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGS 375

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 39/273 (14%), Positives = 76/273 (27%), Gaps = 30/273 (10%)

Query: 68  TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF 127
              ++        +        + +Y  A    +  +    L       C+ FS DG   
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYL 77

Query: 128 AAGGVDGHLRIMHWPSLRII------------------LDEPKAHKSVLDMDFSLDSEFL 169
           A G  +   ++       ++                     P +   +  + FS D +FL
Sbjct: 78  ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136

Query: 170 ATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVY 229
           AT +        +                +            P     V       + ++
Sbjct: 137 ATGA------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 190

Query: 230 DISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG- 288
           D+ T        +     +V     DGKY+A GS D  + V D +   +       +   
Sbjct: 191 DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG 250

Query: 289 ----TSIALVEFCPTQRVVLTASKEWGAMITKL 317
                S+  V F    + V++ S +    +  L
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 40  FSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDI 99
              D    S            +      ++   P+G+       +   ++  V       
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---- 256

Query: 100 NLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLD 159
                K            L F+  G  F + G D  L     P    I  + K   SVL 
Sbjct: 257 ----DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-QSKESSSVLS 311

Query: 160 MDFSLDSEFLATTSTDGSARIWK 182
            D S+D +++ T S D  A +++
Sbjct: 312 CDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 35/278 (12%), Positives = 79/278 (28%), Gaps = 19/278 (6%)

Query: 30  ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKL 89
            +     ++++           SP+        +    +  + P G   +         +
Sbjct: 67  YTGGKGCVKVWDIS---HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123

Query: 90  FEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILD 149
           +++      I        P         L+ S D     +   DG++ +    +  ++  
Sbjct: 124 WDLAAPTPRIKAELTSSAP-----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 178

Query: 150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
                     +D S D   L T   D + R W   +G         S   I    +   G
Sbjct: 179 FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTG 236

Query: 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269
              +L   ++  +  +L V     +    H+  +      L  +  GK+     KD  + 
Sbjct: 237 --EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS----LKFAYCGKWFVSTGKDNLLN 290

Query: 270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS 307
                         +    +S+   +     + ++T S
Sbjct: 291 AWRTPYGASIF---QSKESSSVLSCDISVDDKYIVTGS 325

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 2/175 (1%)

Query: 114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-LDEPKAHK-SVLDMDFSLDSEFLAT 171
           P  C +++ D ++ A    +  + I      + + + E K H   V  +D++ DS  + T
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 172 TSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDI 231
             TD +A +W  +       L      +   C       K F   +  R         + 
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 232 STWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLH 286
             W     K+ +R     L    +   LA GS D    +      E+        
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.8 bits (83), Expect = 0.003
 Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 65  DPMT-IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD 123
           +P++  A N           N    ++E  G         +     +  G    + ++ D
Sbjct: 8   EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----WVQVHELKEHNGQVTGVDWAPD 62

Query: 124 GSRFAAGGVDGHLRIMHWP 142
            +R    G D +  +    
Sbjct: 63  SNRIVTCGTDRNAYVWTLK 81

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 7e-09
 Identities = 13/70 (18%), Positives = 28/70 (40%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
              + + F   G    +   D  LR+  + + R +         V  +DF   + ++ T 
Sbjct: 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307

Query: 173 STDGSARIWK 182
           S D + ++W+
Sbjct: 308 SVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 27/180 (15%), Positives = 56/180 (31%), Gaps = 26/180 (14%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS------ 166
              + +  + DG+  A+   D  +R+    +     +  +    V  + ++ +S      
Sbjct: 144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 203

Query: 167 --------------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKP 212
                          FL + S D + ++W    G+    L  + +  +    F   G   
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGG--K 260

Query: 213 FLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVD 272
           F+       D   L V+D      +          + L       Y+  GS D  + V +
Sbjct: 261 FILSC---ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 18/167 (10%), Positives = 46/167 (27%), Gaps = 14/167 (8%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPP-------- 108
             F         +  N  G      + +   +++ V        L   +           
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 109 -----LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS 163
                + +A   +       G    +G  D  +++    +   ++        V  + F 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH 256

Query: 164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
              +F+ + + D + R+W  ++      L  +    +    F K   
Sbjct: 257 SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHKTAP 302

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 12/190 (6%)

Query: 152 KAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT 210
             H+S V  + F      + + S D + ++W  E G     L  ++D   ++        
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD----- 68

Query: 211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICV 270
                          + ++D   +  I          S +SI  +G ++   S+D  I +
Sbjct: 69  -HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPL 330
            +V+       +   H       V       ++ + S +    +  +   A  +  +   
Sbjct: 128 WEVQTGY-CVKTFTGHREWVRM-VRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELR 182

Query: 331 LHSHSQNSVS 340
            H H    +S
Sbjct: 183 EHRHVVECIS 192

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 6/168 (3%)

Query: 113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATT 172
            P   + F    S   +   D  +++  + +        K H   +       S  L  +
Sbjct: 18  SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER-TLKGHTDSVQDISFDHSGKLLAS 76

Query: 173 STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIS 232
            +           G          D  +       +G        V       + ++++ 
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-----HIVSASRDKTIKMWEVQ 131

Query: 233 TWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH 280
           T   +      R+   ++  + DG  +A  S D  + V  V   E   
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 8/122 (6%)

Query: 157 VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC 216
                   D +    T+          E G       R  D        +   T+ F   
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY 259

Query: 217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM 276
            V       L  +D+     I    L     SV ++S DG  + +G   GD+   D + +
Sbjct: 260 NV-------LESFDLEKNASIKRVPLPHSYYSV-NVSTDGSTVWLGGALGDLAAYDAETL 311

Query: 277 EI 278
           E 
Sbjct: 312 EK 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 67  MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD--------AGPQKCL 118
               +    + + CS+ +G   +        D N   +               A P   +
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 119 SFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA 178
            FS         G DG +   +  + + I +  K ++    +  +     L   ++D + 
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIACSDNILCLATSDDTF 316

Query: 179 RIWKTED 185
           +     D
Sbjct: 317 KTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 5e-05
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 151 PKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK--IELCRFSK 207
            +A K  + D+        L  TS DGS  ++K +       L ++   K  +  C F  
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 208 DGTKPFLFCT 217
           +        T
Sbjct: 67  NTDLQIYVGT 76

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 5/144 (3%)

Query: 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSA-RIWKTEDGVAWTF 191
           D  +    +  +      P    S         S        D +      +   V    
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265

Query: 192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLS 251
                  +  +  +S      F        +K +L  YD+ T          +   + L 
Sbjct: 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV----KNNLTDLR 321

Query: 252 ISLDGKYLAMGSKDGDICVVDVKK 275
           +S D K + +   DG I    ++K
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 4/130 (3%)

Query: 57  YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQK 116
           +V     G P    + P          +             D       +P         
Sbjct: 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG 176
                   + +      G L      + ++     +   ++ D+  S D + +     DG
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 177 SARIWKTEDG 186
               +  E  
Sbjct: 337 KIYTFPLEKP 346

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 36/269 (13%), Positives = 64/269 (23%), Gaps = 36/269 (13%)

Query: 39  IFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATD 98
           I+  D  T        ++ V  E      + A++P G +   +                 
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 99  INL-------LAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL--- 148
           + +        AK +           +  + DGS + AG     + +        +    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 149 -------------------DEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW 189
                                 +         F  D +  AT            + G   
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 190 TFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASV 249
           T    +  E       S            +      LA YD+     I    L      V
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNR------LAKYDLKQRKLIKAANLDHTYYCV 297

Query: 250 LSISLDGKYLAMGSKDGDICVVDVKKMEI 278
            +    G  L +G    D+ V +   +E 
Sbjct: 298 -AFDKKGDKLYLGGTFNDLAVFNPDTLEK 325

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 1/114 (0%)

Query: 72  NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG 131
           NP G  F  +  +G   L+    G          +  +  +G    L++S DG++ A+  
Sbjct: 198 NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 257

Query: 132 VDGHLRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTE 184
            D  ++I +  +L++    P   +     +      + L + S +G       E
Sbjct: 258 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 115 QKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTS 173
           +      ++    A G +D ++ I        I+    AHK  V ++ +   S  L ++ 
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSG 276

Query: 174 TDGSARIWK 182
            D   + W 
Sbjct: 277 ADACIKRWN 285

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 7e-04
 Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 127 FAAGGVDGHLRI--MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIW 181
            A G +D  + +  M+ PS   I+ +     S ++    L+   + +   D + + W
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 8e-04
 Identities = 8/51 (15%), Positives = 17/51 (33%)

Query: 155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRF 205
           K++  +  S D + L +   +G    W    G++           I   + 
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 7/66 (10%), Positives = 20/66 (30%), Gaps = 2/66 (3%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKS-VLDMDFSLDSEFLATTSTD 175
            ++           G +    I +  S +++          +  ++F      +A    D
Sbjct: 286 AITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKD 344

Query: 176 GSARIW 181
           G + + 
Sbjct: 345 GQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 13/126 (10%), Positives = 39/126 (30%), Gaps = 5/126 (3%)

Query: 152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK 211
           + H + +      +  ++ T + D   R++ + +      L+ +    +   +++  G  
Sbjct: 9   RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG-VWALKYAHGGI- 66

Query: 212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVV 271
                +        +          +            +    + KY+  GS+D  + V 
Sbjct: 67  ---LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 272 DVKKME 277
            + K  
Sbjct: 124 KLPKES 129

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 21/167 (12%)

Query: 117 CLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHK------SVLDMDFSLDSEFLA 170
            +  S  G   A G  +G ++I    +LR + +    H       S+  + FS     LA
Sbjct: 189 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 171 TTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK----------PFLFCTVQR 220
                 S       +      +   S           +                      
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 221 GDKALLAVYDISTWNKI----GHKRLLRKPASVLSISLDGKYLAMGS 263
           G    L  +D+ T  +I     H   +     +L++   G  LA   
Sbjct: 308 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 13/128 (10%), Positives = 32/128 (25%), Gaps = 38/128 (29%)

Query: 151 PKAHKS-VLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG 209
            KAH + +  +     + F  + S DG  ++W                         K  
Sbjct: 10  GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDN-----------------------KLL 44

Query: 210 TKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDIC 269
                             ++ +                ++   + +   +A  S  GD+ 
Sbjct: 45  DNENPKDKSYSHFVHKSGLHHVDVLQ------------AIERDAFELCLVATTSFSGDLL 92

Query: 270 VVDVKKME 277
              + + +
Sbjct: 93  FYRITRED 100

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 14/146 (9%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 45  KTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAK 104
            +  V+       +   +    +T  +    +  V    +   K++++  G         
Sbjct: 197 TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC------L 250

Query: 105 KMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII-----LDEPKAHKSVLD 159
           +     +           + +       DG +++    +   I     L+   +   V  
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 160 MDFSLDSEFLATTSTDGSA----RIW 181
           +  S      A  S +G+      + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEETKLLVL 336

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 3/140 (2%)

Query: 133 DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL 192
           D  +++ +  +   +       + +  + +      + + S+D + R+W  E G     L
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 214

Query: 193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSI 252
             + +    +   +K          ++  D                 + L+     V  +
Sbjct: 215 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC-LRTLVEHSGRVFRL 273

Query: 253 SLDGKYLAMGSKDGDICVVD 272
             D   +   S D  I + D
Sbjct: 274 QFDEFQIVSSSHDDTILIWD 293

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.69
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.63
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.6
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.53
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.5
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.5
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.49
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.48
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.37
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.36
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.34
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.32
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.27
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.24
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.23
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.15
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.1
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.98
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.96
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.8
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.47
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.29
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.15
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.11
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.06
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.94
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.88
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.81
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.77
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.5
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.47
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.06
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.97
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.95
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.81
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.78
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.77
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.68
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.59
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.43
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.38
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.28
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.83
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.6
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.35
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.1
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.02
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	94.65
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.55
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.39
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	90.24
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	86.13

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-46  Score=309.76  Aligned_cols=288  Identities=14%  Similarity=0.128  Sum_probs=245.4

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      ++..+|+|++|+|   ++.++++|+       ++.|++|++......   .........+|.+.|.+++|+|+|++|+++
T Consensus        49 ~H~~~V~~v~fs~---~g~~latg~-------dg~V~iWd~~~~~~~---~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~  115 (337)
T d1gxra_          49 NHGEVVCAVTISN---PTRHVYTGG-------KGCVKVWDISHPGNK---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVG  115 (337)
T ss_dssp             CCSSCCCEEEECS---SSSEEEEEC-------BSEEEEEETTSTTCC---SCSEEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECC---CCCEEEEEE-------CCEEEEEEccCCccc---ceeEEeeecCCCCcEEEEEEcCCCCEEEEe
Confidence            4678999999999   556788553       456999998744322   233445566899999999999999999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +.|+.|++||+...........     ..|...+.+++|+|++.++++++.|+.|++|++.+++.......|...+.+++
T Consensus       116 ~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~  190 (337)
T d1gxra_         116 GEASTLSIWDLAAPTPRIKAEL-----TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID  190 (337)
T ss_dssp             ESSSEEEEEECCCC--EEEEEE-----ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             eccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999876543222111     12667899999999999999999999999999999998888888888999999


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      |+++++.+++++.|+.+++||+++++.+..+.  +...|.+++|+|+++.     +++++.|+.+++||+++++.. ...
T Consensus       191 ~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~-----l~~~~~d~~i~i~d~~~~~~~-~~~  262 (337)
T d1gxra_         191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEW-----LAVGMESSNVEVLHVNKPDKY-QLH  262 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTSSCEE-EEC
T ss_pred             ccccccccccccccccccccccccceeecccc--cccceEEEEEcccccc-----cceeccccccccccccccccc-ccc
Confidence            99999999999999999999999999887775  4567999999999987     788899999999999988865 556


Q ss_pred             ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          242 LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       242 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      .|...|++++|+|++++|++++.||.|++||+.+++.+...  .| ...|.+++|+|++++|++|+.||.|+||++-
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--~~-~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--cC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            78889999999999999999999999999999999887664  34 5789999999999999999999999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3e-45  Score=300.95  Aligned_cols=284  Identities=14%  Similarity=0.131  Sum_probs=232.7

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN   84 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d   84 (340)
                      +++.+++++|+.   ..++++.       ++.+.+|+++        .......+.+|.+.|++++|+|+|++||+|+.|
T Consensus        18 ~~~~~~a~~~~g---~~l~~~~-------~~~v~i~~~~--------~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~d   79 (311)
T d1nr0a1          18 GTAVVLGNTPAG---DKIQYCN-------GTSVYTVPVG--------SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH   79 (311)
T ss_dssp             TCCCCCEECTTS---SEEEEEE-------TTEEEEEETT--------CSSCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEEcCCC---CEEEEEe-------CCEEEEEECC--------CCceeEEEcCCCCCEEEEEEeCCCCeEeccccC
Confidence            466788888844   4555443       3348899887        344445678999999999999999999999999


Q ss_pred             CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC--CCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV--DGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      |.|++||+.+..........     .|..+|.+++|+|++++|++++.  +..+++|++++++....+..|...|.+++|
T Consensus        80 g~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~  154 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTTIP-----VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF  154 (311)
T ss_dssp             SEEEEEESSSTTCCEEEEEE-----CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEE
T ss_pred             ceEeeeeeeccccccccccc-----cccCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999887644322111     26789999999999999998875  456999999999988888888889999999


Q ss_pred             cCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee
Q 019482          163 SLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR  241 (340)
Q Consensus       163 ~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  241 (340)
                      +|++++ |++|+.|+.|++||+++++....+.. +...|.++.|+|+++.     +++++.|+.|++||.++++.+..+.
T Consensus       155 ~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~-~~~~i~~v~~~p~~~~-----l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSL-----FASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             CSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTCCEEEECB
T ss_pred             cccceeeeccccccccccccccccccccccccc-ccccccccccCccccc-----ccccccccccccccccccccccccc
Confidence            999885 88899999999999999988887764 4568999999999997     7888999999999999988765553


Q ss_pred             -------ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482          242 -------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (340)
Q Consensus       242 -------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  314 (340)
                             +|...|++++|+|++++|++|+.||.|+|||++++++++.+...+ ......+.+.++++.|++++.||.|++
T Consensus       229 ~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~l~s~s~dG~i~~  307 (311)
T d1nr0a1         229 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT-RIEDQQLGIIWTKQALVSISANGFINF  307 (311)
T ss_dssp             CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SGGGCEEEEEECSSCEEEEETTCCEEE
T ss_pred             ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC-CccceEEEEEecCCEEEEEECCCEEEE
Confidence                   356789999999999999999999999999999999888764332 223334455556678999999999999


Q ss_pred             EEec
Q 019482          315 TKLT  318 (340)
Q Consensus       315 w~~~  318 (340)
                      |+.+
T Consensus       308 wd~d  311 (311)
T d1nr0a1         308 VNPE  311 (311)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            9964

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-43  Score=289.22  Aligned_cols=287  Identities=13%  Similarity=0.121  Sum_probs=250.6

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +.++|+|++|+|   +..++++|+      .|+.|++|++.        +......+++|...|.+++|+|++.+++++.
T Consensus        16 H~~~I~~l~~sp---~~~~l~s~s------~Dg~i~iWd~~--------~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1          16 HRSPVTRVIFHP---VFSVMVSAS------EDATIKVWDYE--------TGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CSSCEEEEEECS---SSSEEEEEE------SSSCEEEEETT--------TCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCeEEEEEcC---CCCEEEEEe------CCCeEEEEECC--------CCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            467899999999   445777666      56779999987        3444567889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .++.+.+|+...........       .|...+.++.|+|+++.+++++.|+.+++||+++++....+..+...+.+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (317)
T d1vyhc1          79 ADMTIKLWDFQGFECIRTMH-------GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP  151 (317)
T ss_dssp             TTSCCCEEETTSSCEEECCC-------CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             cccccccccccccccccccc-------cccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeec
Confidence            99999999988776544432       36788999999999999999999999999999999988888888889999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE---------------EEEEecCCcceEE
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL---------------FCTVQRGDKALLA  227 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------------~~~~~~~~d~~i~  227 (340)
                      +|++++|++++.|+.|++|++++++....+.. +...+.+++|+|++.....               ..+.+++.|+.|+
T Consensus       152 ~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         152 NQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             ccCCCEEEEEeCCCeEEEEeeccceeeEEEec-CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            99999999999999999999999998888874 4467999999987653210               1257788899999


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEe
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      +||+++++++..+..|...|.+++|+|++++|++++.||.|++||+++++++..+ ..| ..+|++++|+|++++|++|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h-~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAH-EHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECC-SSCEEEEEECSSSSCEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE-cCC-CCCEEEEEEcCCCCEEEEEe
Confidence            9999999999999999999999999999999999999999999999999888776 456 57999999999999999999


Q ss_pred             cCCcEEEEE
Q 019482          308 KEWGAMITK  316 (340)
Q Consensus       308 ~dg~i~iw~  316 (340)
                      .||.|+||+
T Consensus       309 ~Dg~i~iWd  317 (317)
T d1vyhc1         309 VDQTVKVWE  317 (317)
T ss_dssp             TTSEEEEEC
T ss_pred             CCCeEEEeC
Confidence            999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-42  Score=292.50  Aligned_cols=292  Identities=17%  Similarity=0.204  Sum_probs=230.4

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcc----------cCCeeeEEEecCCCCeeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVY----------TSPLVTYVFDESEGDPMTIAV   71 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~   71 (340)
                      ++..+|+|++|+|   ++.++|+|+       ++.|++|++........          ..........+|...|++++|
T Consensus        60 ~H~~~V~~l~fs~---dg~~lasg~-------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~  129 (388)
T d1erja_          60 DHTSVVCCVKFSN---DGEYLATGC-------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF  129 (388)
T ss_dssp             ECSSCCCEEEECT---TSSEEEEEC-------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEE
T ss_pred             CCCCcEEEEEECC---CCCEEEEEe-------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEE
Confidence            4678999999999   456788543       55699999863221100          011122334568888999999


Q ss_pred             cCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccc
Q 019482           72 NPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEP  151 (340)
Q Consensus        72 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  151 (340)
                      +|+|++|++|+.||.|++||...++......       .|...|.++.|++++..+++++.++.+++||+++........
T Consensus       130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  202 (388)
T d1erja_         130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQ-------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  202 (388)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCcceecccccccccccccccccccccc-------cccccccccccccccccccccccceeeeeeeccccccccccc
Confidence            9999999999999999999999887665543       277899999999999999999999999999999887766554


Q ss_pred             cCccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEeec------CCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          152 KAHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLTR------NSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       152 ~~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      .+ ....++.+.+ ++++|++++.|+.|++||.+++.....+..      .+...|.+++|+|+++.     +++++.|+
T Consensus       203 ~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-----l~s~~~d~  276 (388)
T d1erja_         203 IE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-----VVSGSLDR  276 (388)
T ss_dssp             CS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-----EEEEETTS
T ss_pred             cc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCE-----EEEEECCC
Confidence            44 4444555555 889999999999999999999887766542      34567999999999987     78889999


Q ss_pred             eEEEEECCCCcE------------EeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482          225 LLAVYDISTWNK------------IGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (340)
Q Consensus       225 ~i~i~d~~~~~~------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~  292 (340)
                      .|++||+++++.            ......|...|.+++|+|++++|++|+.||.|++||+++++++..+ .+| ...|.
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l-~~H-~~~V~  354 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGH-RNSVI  354 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE-ECC-SSCEE
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-eCC-CCCEE
Confidence            999999986542            3345567788999999999999999999999999999999998876 466 57888


Q ss_pred             eEEE------ecCCeEEEEEecCCcEEEEEec
Q 019482          293 LVEF------CPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       293 ~~~~------~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ++++      +|++++|++|+.||.|+||+++
T Consensus       355 ~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         355 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            8875      6789999999999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-42  Score=291.94  Aligned_cols=288  Identities=14%  Similarity=0.167  Sum_probs=227.6

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      -.||+|++|+|   ++.++|+|+      .++.|++|+.+..      .......+++|.++|++++|+|++++|++++.
T Consensus         7 ~~pIt~~~~s~---dg~~la~~~------~~~~i~iw~~~~~------~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~   71 (371)
T d1k8kc_           7 VEPISCHAWNK---DRTQIAICP------NNHEVHIYEKSGN------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT   71 (371)
T ss_dssp             SSCCCEEEECT---TSSEEEEEC------SSSEEEEEEEETT------EEEEEEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEECC---CCCEEEEEe------CCCEEEEEECCCC------CEEEEEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence            36899999999   456777665      4566999998632      23456778999999999999999999999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce----eeccccCccceeE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI----ILDEPKAHKSVLD  159 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~----~~~~~~~~~~i~~  159 (340)
                      |+.|++||+.+..........     .|...|.+++|+|++++|++++.|+.|++|+++....    ......+...|.+
T Consensus        72 D~~i~vWd~~~~~~~~~~~~~-----~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          72 DRNAYVWTLKGRTWKPTLVIL-----RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             TSCEEEEEEETTEEEEEEECC-----CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             CCeEEEEeecccccccccccc-----cccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccc
Confidence            999999999877654333221     3678999999999999999999999999999876543    2223456678999


Q ss_pred             EEecCCCCeEEEeeCCCeEEEEEccCCe------------------eEEEeecCCCCceeeEEEccCCCcceEEEEEecC
Q 019482          160 MDFSLDSEFLATTSTDGSARIWKTEDGV------------------AWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRG  221 (340)
Q Consensus       160 ~~~~~~~~~l~~~~~d~~v~iwd~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  221 (340)
                      ++|+|++++|++|+.|+++++|+.....                  .+.... .+...+.+++|+|+++.     +++++
T Consensus       147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~-----l~s~~  220 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSR-----VAWVS  220 (371)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSE-----EEEEE
T ss_pred             ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeeccccc-----ccccc
Confidence            9999999999999999999999986432                  223333 34567999999999987     78888


Q ss_pred             CcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccC--ceEeec------------------
Q 019482          222 DKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKK--MEINHW------------------  281 (340)
Q Consensus       222 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~~~~~~------------------  281 (340)
                      .|+.|++||+.+++.+..+..+..+|.+++|+|++++|++|. |+.+++|....  +.....                  
T Consensus       221 ~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (371)
T d1k8kc_         221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  299 (371)
T ss_dssp             TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             cCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCcccccccccccee
Confidence            999999999999999999999999999999999998888765 67777765432  221100                  


Q ss_pred             --------------------ccccccccceeeEEEecCC----eEEEEEecCCcEEEEEecC
Q 019482          282 --------------------SKRLHLGTSIALVEFCPTQ----RVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       282 --------------------~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~iw~~~~  319 (340)
                                          +...| ...|+++++.+.+    ..|+|+|.||.|+||+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~H-~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         300 RFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             HHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eEecccceeEEeccccccceecccc-cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                00124 4689999998854    4689999999999999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=276.93  Aligned_cols=262  Identities=15%  Similarity=0.202  Sum_probs=218.0

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEe
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMH  140 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d  140 (340)
                      +|...|.+++|+|+|++|++|+ ||.|+|||+...........  .....|.+.|.+++|+|++++|++++.||.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~--~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEE--EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEE--eeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            7999999999999999999987 78999999987643322211  11234788999999999999999999999999999


Q ss_pred             CCCC--ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEE
Q 019482          141 WPSL--RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       141 ~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      +...  +....+..+...+..+.|+|++.++++++.|+.+++|+++++++...... +...+.+++|++++..     ++
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~~~~-----~~  199 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTK-----LW  199 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSE-----EE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc-----cc
Confidence            8754  34455566777899999999999999999999999999999988777664 4567999999999987     78


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      .++.|+.+++||+++++.+..+ .+...|.+++|+|++++|++++.|+.+++||+++++....  ..| ...|++++|+|
T Consensus       200 ~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~-~~~i~~v~~s~  275 (337)
T d1gxra_         200 TGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLH-ESCVLSLKFAY  275 (337)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCC-SSCEEEEEECT
T ss_pred             cccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccccc--ccc-ccccceEEECC
Confidence            8889999999999999887654 4677899999999999999999999999999998887654  345 57899999999


Q ss_pred             CCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          299 TQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      ++++|++++.||.|++|++.....   + ....|...|.++
T Consensus       276 ~g~~l~s~s~Dg~i~iwd~~~~~~---~-~~~~~~~~v~~~  312 (337)
T d1gxra_         276 CGKWFVSTGKDNLLNAWRTPYGAS---I-FQSKESSSVLSC  312 (337)
T ss_dssp             TSSEEEEEETTSEEEEEETTTCCE---E-EEEECSSCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCE---E-EEccCCCCEEEE
Confidence            999999999999999999865442   2 223455555544

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-39  Score=268.72  Aligned_cols=285  Identities=16%  Similarity=0.197  Sum_probs=236.8

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +.++|+|++|+|   +..++++|+      .|+.|++|++.        +......+..|...|.+++|+|++.++++++
T Consensus        54 H~~~I~~l~~s~---~~~~l~sgs------~Dg~v~iWd~~--------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          54 HLAKIYAMHWGT---DSRLLVSAS------QDGKLIIWDSY--------TTNKVHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             CSSCEEEEEECT---TSSEEEEEE------TTTEEEEEETT--------TTEEEEEEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCEEEEEECC---CCCEEEEEE------CCCceeeeecc--------cceeEEEEecccccEEeeEeeccceeeeeec
Confidence            468899999999   445777766      56679999987        5556677889999999999999999999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+.+++|+..............   ..|......... ..+..+.....+.....+.............+...+....+
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSREL---AGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEE---CCCSSCEEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred             ccceeecccccccccccccceec---cccccccccccc-ccccccccccccccccccccccccccccccccceeEeeecc
Confidence            99999999987654332221111   113344444444 44557777888999999998877777666677778999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-
Q 019482          163 SLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-  241 (340)
Q Consensus       163 ~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-  241 (340)
                      .+.+.++++++.|+.|++||+++++++..+.. +...|.+++|+|++..     +++++.|+.|++||++..+.+..+. 
T Consensus       193 ~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-h~~~i~~v~~~p~~~~-----l~s~s~d~~i~~~~~~~~~~~~~~~~  266 (340)
T d1tbga_         193 APDTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNA-----FATGSDDATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             ccccceeEEeecCceEEEEECCCCcEEEEEeC-CCCCeEEEEECCCCCE-----EEEEeCCCeEEEEeeccccccccccc
Confidence            99999999999999999999999999988875 4568999999999987     7888999999999999988765553 


Q ss_pred             -ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          242 -LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       242 -~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                       .+...+.+++|+|++++|++|+.||.|++||+.+++.+..+ .+| ..+|++++|+|++++|++|+.||.|+||+
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~H-~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL-AGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE-CCC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE-cCC-CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence             44567999999999999999999999999999999988776 466 57999999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.5e-40  Score=267.87  Aligned_cols=267  Identities=16%  Similarity=0.205  Sum_probs=237.6

Q ss_pred             eeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           55 VTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        55 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      ....|+||.+.|++++|+|++++|++|+.||.|+|||+.+++....+..       |...|.+++|+|++.+++++..++
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-------h~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-------HTDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-------CCCcEEEEeeeccccccccccccc
Confidence            3467999999999999999999999999999999999998877665532       778999999999999999999999


Q ss_pred             cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          135 HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      .+.+|+....+.......+...+.++.|+|+++.+++++.|+.+++||+++++.+..+..+ ...+.+++|+|++..   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---  157 (317)
T d1vyhc1          82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQDGTL---  157 (317)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSE---
T ss_pred             ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccC-CCcceeeecccCCCE---
Confidence            9999999988888888888889999999999999999999999999999999998888754 467999999999987   


Q ss_pred             EEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCC--------------------CEEEEeeCCCcEEEEecc
Q 019482          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDG--------------------KYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~--------------------~~l~~~~~dg~i~i~d~~  274 (340)
                        +++++.|+.|++|+.++++.+..+..+...+.++.|+|++                    .++++++.|+.|++||++
T Consensus       158 --l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  235 (317)
T d1vyhc1         158 --IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  235 (317)
T ss_dssp             --EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             --EEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence              7888999999999999999998898899999999988764                    468999999999999999


Q ss_pred             CceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          275 KMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       275 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      +++++..+. .| ...|.+++|+|++++|++++.||.|++|++....   .+.....|...|++|
T Consensus       236 ~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         236 TGMCLMTLV-GH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---CMKTLNAHEHFVTSL  295 (317)
T ss_dssp             TTEEEEEEE-CC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---CCEEEECCSSCEEEE
T ss_pred             CCcEEEEEe-CC-CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc---EEEEEcCCCCCEEEE
Confidence            999887764 56 5799999999999999999999999999996544   456667788888765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.8e-40  Score=272.31  Aligned_cols=246  Identities=15%  Similarity=0.155  Sum_probs=210.6

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      +.+.+..++++|+|+.|+.+.. +.+.+|++++......+.       .|...|++++|+|+|++|++|+.||+|++||+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~~-~~v~i~~~~~~~~~~~~~-------~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~   87 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYT-------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDT   87 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEEC-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEES
T ss_pred             CCCCeEEEEEcCCCCEEEEEeC-CEEEEEECCCCceeEEEc-------CCCCCEEEEEEeCCCCeEeccccCceEeeeee
Confidence            4456778999999999998864 459999998876655443       37889999999999999999999999999999


Q ss_pred             CCCcee--eccccCccceeEEEecCCCCeEEEeeC--CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          142 PSLRII--LDEPKAHKSVLDMDFSLDSEFLATTST--DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       142 ~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      .+++..  ..+..|...|.+++|+|++++|++++.  +..+++|++++++....+.. +...|.+++|+|++++.    +
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~-h~~~v~~v~~~~~~~~~----l  162 (311)
T d1nr0a1          88 TQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG-QARAMNSVDFKPSRPFR----I  162 (311)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC-CSSCEEEEEECSSSSCE----E
T ss_pred             eccccccccccccccCccccccccccccccccccccccccccccccccccccccccc-cccccccccccccceee----e
Confidence            887644  345667789999999999999999875  45699999999988887765 44679999999999863    5


Q ss_pred             EecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc------ccccccce
Q 019482          218 VQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK------RLHLGTSI  291 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~i  291 (340)
                      ++++.|+.|++||+++++.......|..+|+++.|+|+++++++++.|+.|++||+.+++....+.      .+| ...|
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h-~~~V  241 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSV  241 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS-SSCE
T ss_pred             cccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            678899999999999999998999999999999999999999999999999999999877665442      234 5689


Q ss_pred             eeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          292 ALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       292 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ++++|+|++++|++|+.||.|+||++...+
T Consensus       242 ~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         242 FGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            999999999999999999999999986443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-39  Score=265.46  Aligned_cols=283  Identities=17%  Similarity=0.149  Sum_probs=215.9

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEE-ecCCCCeeEEEEcCCCCeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVF-DESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      +..+|+|++|+|   ++.++++|+      .|+.|++|+++        +......+ .+|...|++++|+|+|+ ++++
T Consensus        11 H~~~V~~l~~s~---dg~~l~s~s------~Dg~v~vWd~~--------~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~   72 (299)
T d1nr0a2          11 HNKAITALSSSA---DGKTLFSAD------AEGHINSWDIS--------TGISNRVFPDVHATMITGIKTTSKGD-LFTV   72 (299)
T ss_dssp             CSSCEEEEEECT---TSSEEEEEE------TTSCEEEEETT--------TCCEEECSSCSCSSCEEEEEECTTSC-EEEE
T ss_pred             CCCCcEEEEECC---CCCEEEEEc------CCCeEEEEECC--------CCcEEEEEcCCCCCcEEEEEeeccce-eecc
Confidence            457899999999   445777666      56679999986        22222333 47899999999999997 4566


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      +.|+.+++|+..........    .....+...+.+++|+|+++++++++ ++.+++|+....  .. . .....+.+++
T Consensus        73 ~~d~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~-~-~~~~~~~~~~  143 (299)
T d1nr0a2          73 SWDDHLKVVPAGGSGVDSSK----AVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TE-V-PISYNSSCVA  143 (299)
T ss_dssp             ETTTEEEEECSSSSSSCTTS----CCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EE-E-ECSSCEEEEE
T ss_pred             cceeeEEEeccCCccccccc----cccccccccccccccccccccccccc-cccccccccccc--cc-c-cccccccccc
Confidence            67888999998654321111    11112567889999999998777665 568999995432  21 1 1234678899


Q ss_pred             ecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe---
Q 019482          162 FSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG---  238 (340)
Q Consensus       162 ~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~---  238 (340)
                      |+|+++++++++.|+.|++||+++++........+...|.+++|+|+++.     +++++.|+.|++||+.++....   
T Consensus       144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~d~~i~~~~~~~~~~~~~~~  218 (299)
T d1nr0a2         144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF-----LVATDQSRKVIPYSVANNFELAHTN  218 (299)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE-----EEEEETTSCEEEEEGGGTTEESCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccc
Confidence            99999999999999999999999887665444456678999999999987     7888999999999998876543   


Q ss_pred             eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee-cccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          239 HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH-WSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       239 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      .+..|..+|++++|+|++++|++|+.||.|++||++++.... .....|....+..+.| +++++|++++.|+.|++|++
T Consensus       219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         219 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred             cccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence            345577899999999999999999999999999998765332 2223443456777755 55678999999999999998


Q ss_pred             c
Q 019482          318 T  318 (340)
Q Consensus       318 ~  318 (340)
                      +
T Consensus       298 ~  298 (299)
T d1nr0a2         298 P  298 (299)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-39  Score=267.41  Aligned_cols=295  Identities=14%  Similarity=0.067  Sum_probs=221.5

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-CCeeEEEEcC--CCCeEEEE
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-GDPMTIAVNP--SGDDFVCS   81 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~--~~~~l~~~   81 (340)
                      +.+++++|+|+.   ..++++.+.       .+.++.++....    .......+.+|. ..|++++|+|  +|.+|++|
T Consensus        18 ~~~t~l~~~~~~---~~la~~~~~-------~~~i~~~~~~~~----~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasg   83 (325)
T d1pgua1          18 NFTTHLSYDPTT---NAIAYPCGK-------SAFVRCLDDGDS----KVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG   83 (325)
T ss_dssp             TCCCCCEEETTT---TEEEEEETT-------EEEEEECCSSCC----SSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred             CCeEEEEECCCC---CEEEEEeCC-------CEEEEEEeCCCC----CccceEEEeCCCCCCEEEEEEeeCCCCCEEEEE
Confidence            466899999953   455644321       244555543222    122234567774 6799999998  56799999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccC-CCCCCCCCeEEEEEecCCCeEEEcc--CCCcEEEEeCCCCceeeccccCcccee
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKAHKSVL  158 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~i~  158 (340)
                      +.||+|+|||+.............. ....+.++|.+++|++++++|++++  .++.+.+|+.++++.+..+..|...|.
T Consensus        84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  163 (325)
T d1pgua1          84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN  163 (325)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred             eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc
Confidence            9999999999976543322211100 0113678999999999999988765  467899999999999888888889999


Q ss_pred             EEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeec--CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCc
Q 019482          159 DMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTR--NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWN  235 (340)
Q Consensus       159 ~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  235 (340)
                      +++|+|++++ +++++.|+.+++||.+..+.......  .+...|.+++|+|++...    +++++.|+.|++||+++++
T Consensus       164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~----l~s~~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEF----VITVGSDRKISCFDGKSGE  239 (325)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCE----EEEEETTCCEEEEETTTCC
T ss_pred             cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccccee----ccccccccceeeeeecccc
Confidence            9999998875 67899999999999988877666543  345679999999985432    6788899999999999999


Q ss_pred             EEeeeeccCCCeeEEEEC---CCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecC-CeEEEEEecCCc
Q 019482          236 KIGHKRLLRKPASVLSIS---LDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPT-QRVVLTASKEWG  311 (340)
Q Consensus       236 ~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~  311 (340)
                      .+..+..|..++..+.|+   |+|++|++++.|+.|+|||+++++++..+........+..+++.+. +.+|++++.||.
T Consensus       240 ~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~  319 (325)
T d1pgua1         240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT  319 (325)
T ss_dssp             EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred             ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCE
Confidence            999988888777666555   7899999999999999999999998876542222233444444432 247899999999


Q ss_pred             EEEEEe
Q 019482          312 AMITKL  317 (340)
Q Consensus       312 i~iw~~  317 (340)
                      |++|++
T Consensus       320 i~vwdl  325 (325)
T d1pgua1         320 LNFYEL  325 (325)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-39  Score=270.04  Aligned_cols=245  Identities=11%  Similarity=0.072  Sum_probs=203.1

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeC
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHW  141 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~  141 (340)
                      +.++|+|++|+|+|++||+++.|+.|+|||..+++........     .|.++|.+++|+|++++|++++.|++|++||+
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~-----gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-----EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-----CCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEec-----CCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence            3578999999999999999999999999999877543222111     38899999999999999999999999999999


Q ss_pred             CCCce--eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeE---EEeecCCCCceeeEEEccCCCcceEEE
Q 019482          142 PSLRI--ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAW---TFLTRNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       142 ~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      .++..  ...+..+...|.+++|+|+++.|++++.|+.+++|+++.....   ......+...|.+++|+|+++.     
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~-----  155 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL-----  155 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE-----
T ss_pred             cccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc-----
Confidence            87653  3445567778999999999999999999999999998765443   2233445678999999999987     


Q ss_pred             EEecCCcceEEEEECCCC------------------cEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482          217 TVQRGDKALLAVYDISTW------------------NKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  278 (340)
                      +++++.|+.+++||....                  +.+.....+...+.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~  235 (371)
T d1k8kc_         156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA  235 (371)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred             eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence            788899999999998643                  23445566778899999999999999999999999999999888


Q ss_pred             eecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecC
Q 019482          279 NHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       279 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      +..+. .| ..+|.+++|+||+++|++|+ |+.+++|.++.
T Consensus       236 ~~~~~-~~-~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~  273 (371)
T d1k8kc_         236 VATLA-SE-TLPLLAVTFITESSLVAAGH-DCFPVLFTYDS  273 (371)
T ss_dssp             EEEEE-CS-SCCEEEEEEEETTEEEEEET-TSSCEEEEEET
T ss_pred             eeeee-cc-cccceeeeecCCCCEEEEEc-CCceEEEEeeC
Confidence            77664 45 57899999999998887655 78888887764

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-38  Score=269.04  Aligned_cols=268  Identities=18%  Similarity=0.192  Sum_probs=214.4

Q ss_pred             ecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecccc-----------CCCCCCCCCeEEEEEecCCCeEE
Q 019482           60 DESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-----------MPPLQDAGPQKCLSFSVDGSRFA  128 (340)
Q Consensus        60 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~  128 (340)
                      .+|.+.|++++|+|+|++||+|+ |+.|+|||+.+++....+....           .....|...|.+++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            36999999999999999999987 8899999998887655443211           11223667899999999999999


Q ss_pred             EccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc-
Q 019482          129 AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK-  207 (340)
Q Consensus       129 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-  207 (340)
                      +|+.||.|++||...++.......|...|.++.+++++..+++++.++.+++||.++......... +. ....+.+.+ 
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~  215 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-ED-GVTTVAVSPG  215 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-SS-CEEEEEECST
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccc-cc-ccccccccCC
Confidence            999999999999999998888888889999999999999999999999999999998887776653 33 355555555 


Q ss_pred             CCCcceEEEEEecCCcceEEEEECCCCcEEeeee-------ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEee
Q 019482          208 DGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-------LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINH  280 (340)
Q Consensus       208 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~  280 (340)
                      ++..     +++++.|+.|++||.+++..+..+.       .|...|.+++|+|++++|++++.||.|++||+.+++...
T Consensus       216 ~~~~-----l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  290 (388)
T d1erja_         216 DGKY-----IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS  290 (388)
T ss_dssp             TCCE-----EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred             CCCe-----EEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccc
Confidence            5665     6788899999999999988665543       456789999999999999999999999999998754332


Q ss_pred             cc-----------cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          281 WS-----------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       281 ~~-----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      ..           ...| ...|.+++|+|++++|++|+.||.|++|++....   .+.....|.+.|.++
T Consensus       291 ~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~---~~~~l~~H~~~V~~~  356 (388)
T d1erja_         291 DSKTPNSGTCEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN---PLLMLQGHRNSVISV  356 (388)
T ss_dssp             --------CEEEEEECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC---EEEEEECCSSCEEEE
T ss_pred             ccccccccceeeecccc-cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc---EEEEEeCCCCCEEEE
Confidence            11           1233 5689999999999999999999999999986544   455667788777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.4e-37  Score=251.56  Aligned_cols=250  Identities=13%  Similarity=0.143  Sum_probs=200.9

Q ss_pred             eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      .....++||.+.|++++|+|+|++|++|+.||.|++||+.+++....+..      .|...|.+++|+|++++ ++++.|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~------~h~~~v~~v~~~~~g~~-~~~~~d   75 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD------VHATMITGIKTTSKGDL-FTVSWD   75 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC------SCSSCEEEEEECTTSCE-EEEETT
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC------CCCCcEEEEEeecccee-ecccce
Confidence            34578999999999999999999999999999999999998776544322      37789999999999975 455678


Q ss_pred             CcEEEEeCCCCcee---eccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          134 GHLRIMHWPSLRII---LDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       134 g~i~~~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      +.+++|+.......   .....+...+.+++|+|+++.+++++ ++.+++|+...  ... ..  ....+.+++|+|+++
T Consensus        76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~-~~--~~~~~~~~~~s~~~~  149 (299)
T d1nr0a2          76 DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTE-VP--ISYNSSCVALSNDKQ  149 (299)
T ss_dssp             TEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEE-EE--CSSCEEEEEECTTSC
T ss_pred             eeEEEeccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccc-cc--ccccccccccccccc
Confidence            99999998654321   11223445788999999999877766 57899998542  222 22  223578999999998


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEe-eeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc--cccc
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIG-HKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK--RLHL  287 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~  287 (340)
                      .     +++++.|+.|++||+++++... ....|...|++++|+|++++|++++.|+.|++||+.++.......  ..| 
T Consensus       150 ~-----l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h-  223 (299)
T d1nr0a2         150 F-----VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-  223 (299)
T ss_dssp             E-----EEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-
T ss_pred             c-----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence            7     7888999999999998876543 345678899999999999999999999999999998876554332  345 


Q ss_pred             ccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          288 GTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       288 ~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      ..+|++++|+|++++|++|+.||.|++|++..+..
T Consensus       224 ~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             ccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            57899999999999999999999999999987654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-36  Score=252.27  Aligned_cols=270  Identities=13%  Similarity=0.105  Sum_probs=224.0

Q ss_pred             CeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC
Q 019482           53 PLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV  132 (340)
Q Consensus        53 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  132 (340)
                      .....+|+||.+.|++++|+|++++||+|+.||.|+|||+.+++....+..       |..+|.+++|+|+++++++++.
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-------~~~~v~~v~~~~~~~~l~~~~~  117 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-------RSSWVMTCAYAPSGNYVACGGL  117 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-------SCSCEEEEEECTTSSEEEEEET
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-------ccccEEeeEeeccceeeeeecc
Confidence            345678999999999999999999999999999999999999887665543       7789999999999999999999


Q ss_pred             CCcEEEEeCCCCce----eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccC
Q 019482          133 DGHLRIMHWPSLRI----ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKD  208 (340)
Q Consensus       133 dg~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (340)
                      |+.+++|+......    ...+..+....... ....+..+.....|.....+............. ....+....+.+.
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  195 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCC-RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPD  195 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEECCCSSCEEEE-EEEETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEECTT
T ss_pred             cceeecccccccccccccceeccccccccccc-ccccccccccccccccccccccccccccccccc-cceeEeeeccccc
Confidence            99999999765432    22333444444433 444456777888899999999887776665553 4456888999998


Q ss_pred             CCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc
Q 019482          209 GTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG  288 (340)
Q Consensus       209 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  288 (340)
                      +..     ++++..|+.|++||+++++.+..+..|...|++++|+|++++|++++.||.|++||+...+...........
T Consensus       196 ~~~-----~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~  270 (340)
T d1tbga_         196 TRL-----FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII  270 (340)
T ss_dssp             SSE-----EEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred             cce-----eEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccccc
Confidence            886     788899999999999999999999999999999999999999999999999999999998877655444445


Q ss_pred             cceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          289 TSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       289 ~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      ..|.+++|+|++++|++|+.||.|++|++....   .......|...|++|
T Consensus       271 ~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~---~~~~~~~H~~~V~~l  318 (340)
T d1tbga_         271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCL  318 (340)
T ss_dssp             SCEEEEEECSSSCEEEEEETTSCEEEEETTTCC---EEEEECCCSSCEEEE
T ss_pred             CceEEEEECCCCCEEEEEECCCEEEEEECCCCc---EEEEEcCCCCCEEEE
Confidence            689999999999999999999999999986443   456667788888765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-35  Score=245.29  Aligned_cols=295  Identities=13%  Similarity=0.170  Sum_probs=222.8

Q ss_pred             ce-eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            5 GT-VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         5 ~~-v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      .. ++|++|..     +++++|+      .|+.|++|++.        +.....++++|.+.|++++|+|+ .+|++++.
T Consensus        13 ~~vitc~~~~~-----~~l~tgs------~Dg~i~vWd~~--------~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~   72 (355)
T d1nexb2          13 TSVITCLQFED-----NYVITGA------DDKMIRVYDSI--------NKKFLLQLSGHDGGVWALKYAHG-GILVSGST   72 (355)
T ss_dssp             SSCEEEEEEET-----TEEEEEE------TTTEEEEEETT--------TTEEEEEEECCSSCEEEEEEETT-TEEEEEET
T ss_pred             CCcEEEEEECC-----CEEEEEe------CCCeEEEEECC--------CCcEEEEEECCCCCEEEEEEcCC-CEEEEEec
Confidence            44 47777653     4677766      56779999987        55667889999999999999985 58999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc---------
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH---------  154 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---------  154 (340)
                      |+.|++|+.............     .+........+.+++.++++++.|+.|++||+++...........         
T Consensus        73 D~~i~iw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d1nexb2          73 DRTVRVWDIKKGCCTHVFEGH-----NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  147 (355)
T ss_dssp             TCCEEEEETTTTEEEEEECCC-----SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred             ccccccccccccccccccccc-----cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence            999999999888765544322     133455667788899999999999999999998755432211000         


Q ss_pred             ------------cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC
Q 019482          155 ------------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (340)
Q Consensus       155 ------------~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (340)
                                  .......+.+++++++++..|+.+++||+++++.+...... ...+.++.|+|++..     +++++.
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~  221 (355)
T d1nexb2         148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKR-----CISASM  221 (355)
T ss_dssp             TTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTE-----EEEEET
T ss_pred             ccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecc-cccccccccccccee-----eecccc
Confidence                        01112345567899999999999999999999988877644 457899999999997     788889


Q ss_pred             cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeE-EEecCCe
Q 019482          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALV-EFCPTQR  301 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~  301 (340)
                      |+.|++||.+++..+..+..|...|.++++++  ++|++++.||.|++||+++......   .|. ..+..+ .++++++
T Consensus       222 d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~---~~~-~~~~~~~~~~~~~~  295 (355)
T d1nexb2         222 DTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS---YHH-TNLSAITTFYVSDN  295 (355)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE---EEC-TTCCCCCEEEECSS
T ss_pred             cceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccceecc---ccc-CCceEEEEEcCCCC
Confidence            99999999999999999999999999999865  6999999999999999998765543   342 344444 5677777


Q ss_pred             EEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          302 VVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       302 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      +|++| .||.|+||+++..+.  .......|...|.+|
T Consensus       296 ~l~~g-~d~~i~vwd~~tg~~--~~~~~~~~~~~V~~v  330 (355)
T d1nexb2         296 ILVSG-SENQFNIYNLRSGKL--VHANILKDADQIWSV  330 (355)
T ss_dssp             EEEEE-ETTEEEEEETTTCCB--CCSCTTTTCSEEEEE
T ss_pred             EEEEE-eCCEEEEEECCCCCE--EEEEecCCCCCEEEE
Confidence            66665 589999999975542  123456677777665

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-33  Score=233.00  Aligned_cols=282  Identities=16%  Similarity=0.183  Sum_probs=209.7

Q ss_pred             CceeE-EeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            4 GGTVT-CGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         4 ~~~v~-~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ..+|. |++|+     ++++++|+      .|+.|++|++.        +..+..++.+|...|.+++|+|+  +|++++
T Consensus        16 ~~~V~s~~~~~-----g~~l~sgs------~Dg~i~vWd~~--------~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2          16 DDHVITCLQFC-----GNRIVSGS------DDNTLKVWSAV--------TGKCLRTLVGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             TTSCEEEEEEE-----TTEEEEEE------TTSCEEEEETT--------TCCEEEECCCCSSCEEEEEEETT--EEEEEE
T ss_pred             CCceEEEEEEC-----CCEEEEEe------CCCeEEEEECC--------CCCEEEEEeCCCCCEEEEEeCCC--ccccce
Confidence            35564 44543     24677666      56779999986        44556778999999999999864  999999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCC-----------------------CC--------CCCCeEEEEEecCCCeEEEcc
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPP-----------------------LQ--------DAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~-----------------------~~--------~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .|+.+++|+.................                       ..        .........+.+....+++++
T Consensus        75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (342)
T d2ovrb2          75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA  154 (342)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence            99999999987654322211100000                       00        001111223344566788889


Q ss_pred             CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          132 VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       132 ~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                      .|+.|++||....+.+..+..|...+..  +.+++.++++++.|+.|++||++.++++..+..+ ...+.++.+++  ++
T Consensus       155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~--~~  229 (342)
T d2ovrb2         155 YDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKD--NI  229 (342)
T ss_dssp             TTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEET--TE
T ss_pred             CCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEeccc-ccceeEEecCC--CE
Confidence            9999999999888888777777655544  4557889999999999999999999998887754 45688777765  34


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeeecc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccc----
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKR----  284 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----  284 (340)
                           +++++.|+.|++||+...+....+..+   ...+.++.+  +++++++|+.||.|++||+++++.++.+..    
T Consensus       230 -----l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~  302 (342)
T d2ovrb2         230 -----LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESG  302 (342)
T ss_dssp             -----EEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTG
T ss_pred             -----EEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCC
Confidence                 788899999999999998877666554   344555555  567999999999999999999988766532    


Q ss_pred             cccccceeeEEEecCCeEEEEEecCCc----EEEEEecC
Q 019482          285 LHLGTSIALVEFCPTQRVVLTASKEWG----AMITKLTV  319 (340)
Q Consensus       285 ~~~~~~i~~~~~~~~~~~l~~~~~dg~----i~iw~~~~  319 (340)
                      .| ...|++++|+|++.+|++|+.||+    +++||++.
T Consensus       303 ~~-~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         303 GS-GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             GG-TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CC-CCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            33 568999999999999999999985    89999864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-33  Score=229.41  Aligned_cols=263  Identities=13%  Similarity=0.075  Sum_probs=207.3

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      +..+|+|++|+|       +++|+      .|+.|++|+..             ....+|...|.++++++++ .+++++
T Consensus        12 H~~~I~~l~~s~-------l~sgs------~Dg~v~~Wd~~-------------~~~~~h~~~V~~~~~~~~~-~~~s~s   64 (287)
T d1pgua2          12 HNKGITALTVNP-------LISGS------YDGRIMEWSSS-------------SMHQDHSNLIVSLDNSKAQ-EYSSIS   64 (287)
T ss_dssp             CSSCEEEEETTT-------TEEEE------TTSCEEETTTT-------------EEECCCCSCEEEEECCSTT-CCEEEE
T ss_pred             CCCceEEEEECc-------EEEEe------CCCeEEEEECC-------------CCCCCCCCCEEEEEecCCC-eEEEEe
Confidence            468999999986       45555      67779999754             1245799999999998754 678999


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|+++++|++...+              ....+.++.+++++..++++. ++.+.+|+..+++....+.. ...  ..++
T Consensus        65 ~D~~v~~w~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~--~~~~  126 (287)
T d1pgua2          65 WDDTLKVNGITKHE--------------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRL-NSP--GSAV  126 (287)
T ss_dssp             TTTEEEETTEEEEE--------------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEEC-SSC--EEEE
T ss_pred             eccccccccccccc--------------cccceeeeeeccCCceEEEee-cccceeeeccceeeeeeccc-cce--eeee
Confidence            99999999986533              224567888998887776654 56788999888887665543 233  3456


Q ss_pred             cCCCCeEEEeeCCC-eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe-ee
Q 019482          163 SLDSEFLATTSTDG-SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG-HK  240 (340)
Q Consensus       163 ~~~~~~l~~~~~d~-~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~  240 (340)
                      +++++.+++++.|+ .+++|++...+....+...+...+.+++|+|++.+     +++++.|+.|++||+.+++.+. .+
T Consensus       127 ~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~~g~~dg~i~i~d~~~~~~~~~~~  201 (287)
T d1pgua2         127 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY-----IAAGDVMGKILLYDLQSREVKTSRW  201 (287)
T ss_dssp             EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE-----EEEEETTSCEEEEETTTTEEEECCS
T ss_pred             eccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccc-----cccccccccccceeecccccccccc
Confidence            77788888777664 79999998777777776667778999999999997     7889999999999999987654 35


Q ss_pred             eccCCCeeEEEECCC----------CCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCC
Q 019482          241 RLLRKPASVLSISLD----------GKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW  310 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  310 (340)
                      ..|..+|.+++|+|+          +.++++|+.|+.|++||+++.........+| ...|++++|+|++. |++++.|+
T Consensus       202 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h-~~~V~~v~~~~~~~-l~s~g~D~  279 (287)
T d1pgua2         202 AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPST-LVSSGADA  279 (287)
T ss_dssp             CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETTE-EEEEETTS
T ss_pred             cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC-CCCeEEEEECCCCE-EEEEECCC
Confidence            678889999999875          4689999999999999997744333344567 57999999999874 88999999


Q ss_pred             cEEEEEe
Q 019482          311 GAMITKL  317 (340)
Q Consensus       311 ~i~iw~~  317 (340)
                      .|++|++
T Consensus       280 ~v~iW~i  286 (287)
T d1pgua2         280 CIKRWNV  286 (287)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-33  Score=237.20  Aligned_cols=283  Identities=14%  Similarity=0.125  Sum_probs=200.3

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEE------cC-CC
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAV------NP-SG   75 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~-~~   75 (340)
                      +.+.|+++++++     +++++++      .|+.|++|+.........  .........|...+..+..      ++ ++
T Consensus        13 H~~~I~~v~~~~-----~~l~S~S------~D~~iriWd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (393)
T d1sq9a_          13 HDADIFSVSACN-----SFTVSCS------GDGYLKVWDNKLLDNENP--KDKSYSHFVHKSGLHHVDVLQAIERDAFEL   79 (393)
T ss_dssp             SSSCEEEEEECS-----SEEEEEE------TTSEEEEEESBCCTTCCG--GGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred             ccCccEEEEEeC-----CEEEEEE------CCCeEEEEECCCCCCCcc--cceeEeeeeccCCceEeeeEeeeccCCCCC
Confidence            467899999875     3466555      567799999764443322  1122233445555433332      11 23


Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeecccc---CCCCCCCCCeEEEEEecC-----CCeEEEccCCCcEEEEeCCCCce-
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKK---MPPLQDAGPQKCLSFSVD-----GSRFAAGGVDGHLRIMHWPSLRI-  146 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~~d~~~~~~-  146 (340)
                      ..+++++.||.|++|++.............   .....+...+..++|.++     +.++++++.||.+++|++..... 
T Consensus        80 ~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~  159 (393)
T d1sq9a_          80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE  159 (393)
T ss_dssp             EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             cEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcc
Confidence            477899999999999987554332222111   111224466788888775     35789999999999999753211 


Q ss_pred             -----------------eeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec-----CCCCceeeEE
Q 019482          147 -----------------ILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-----NSDEKIELCR  204 (340)
Q Consensus       147 -----------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-----~~~~~v~~~~  204 (340)
                                       ......+...+.+++|+|++ +|++|+.|++|++||+++++++..+..     .|..+|.+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             cceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                             11112223458899999987 899999999999999999988776652     3557899999


Q ss_pred             EccCCCcceEEEEEecCCcc---eEEEEECCCCcEEeeee-------------ccCCCeeEEEECCCCCEEEEeeCCCcE
Q 019482          205 FSKDGTKPFLFCTVQRGDKA---LLAVYDISTWNKIGHKR-------------LLRKPASVLSISLDGKYLAMGSKDGDI  268 (340)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~~~~~dg~i  268 (340)
                      |+|+++.     +++++.|+   .|++||+++++.+..+.             +|...|++++|+|++++|++++.|+.|
T Consensus       239 ~spdg~~-----l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         239 FSPQGSL-----LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             ECSSTTE-----EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             cccccce-----eeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            9999997     67777665   59999999988776653             688899999999999999999999999


Q ss_pred             EEEeccCceEeeccccccccccee----eEEEecCCeEEEEE
Q 019482          269 CVVDVKKMEINHWSKRLHLGTSIA----LVEFCPTQRVVLTA  306 (340)
Q Consensus       269 ~i~d~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~l~~~  306 (340)
                      ++||+++++++..+ .+| ...|.    .++|+|++..++++
T Consensus       314 ~vWd~~~g~~~~~l-~gH-~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         314 RFWDVKTKERITTL-NMH-CDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEEETTTTEEEEEE-ECC-GGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             EEEECCCCCEEEEE-CCc-CCcccCCccEEEECCCCCEEEEc
Confidence            99999999998877 356 33443    46666666655544

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-33  Score=231.99  Aligned_cols=283  Identities=14%  Similarity=0.179  Sum_probs=211.7

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEe--cCCCCeeEEEEcCCCCeEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD--ESEGDPMTIAVNPSGDDFVC   80 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~~   80 (340)
                      +..+|++++|+|+    .++++|+      .|+.+++|.+...        .......  .+........+++++.++++
T Consensus        52 H~~~V~~l~~s~~----~~l~s~s------~D~~i~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (355)
T d1nexb2          52 HDGGVWALKYAHG----GILVSGS------TDRTVRVWDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVT  113 (355)
T ss_dssp             CSSCEEEEEEETT----TEEEEEE------TTCCEEEEETTTT--------EEEEEECCCSSCEEEEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEEcCC----CEEEEEe------ccccccccccccc--------ccccccccccccccccccccccccceeee
Confidence            4688999999873    2455554      6677999998732        2222222  23334556778889999999


Q ss_pred             EecCCCEEEEEecCceeeeeeccccCCC----------------CCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482           81 STTNGGCKLFEVYGGATDINLLAKKMPP----------------LQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        81 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      ++.|+.|++||+.+..............                ..|...  ...+.+++++++++..|+.|++||+.++
T Consensus       114 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~  191 (355)
T d1nexb2         114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQM  191 (355)
T ss_dssp             EETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSC--EEEEEEETTEEEEEETTSCEEEEETTTT
T ss_pred             ecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccc--ccccccccceeeeecccceeeeeecccc
Confidence            9999999999998765432221110000                001122  2345667889999999999999999999


Q ss_pred             ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          145 RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      +.+.....+...+.++.|+|+++++++++.|+.|++||++++..+..+.. +...|.+++++++  .     +++++.|+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~~~~--~-----l~~~~~dg  263 (355)
T d1nexb2         192 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLSDK--F-----LVSAAADG  263 (355)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC-CSSCCCEEEECSS--E-----EEEECTTS
T ss_pred             cceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc-ccccccccccccc--e-----eeeeeccc
Confidence            88888877888899999999999999999999999999999999888875 4567999999753  3     78899999


Q ss_pred             eEEEEECCCCcEEeeeeccCCCeeEE-EECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEE
Q 019482          225 LLAVYDISTWNKIGHKRLLRKPASVL-SISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV  303 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  303 (340)
                      .|++||+++....  +..|...+.++ .++++++++++| .|+.|++||+++++.+......| ..+|.+++|+|+ .++
T Consensus       264 ~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~-~~~V~~v~~~~~-~~~  338 (355)
T d1nexb2         264 SIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKD-ADQIWSVNFKGK-TLV  338 (355)
T ss_dssp             EEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTT-CSEEEEEEEETT-EEE
T ss_pred             cccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCC-CCCEEEEEEcCC-eEE
Confidence            9999999987754  44455555554 456777777666 58999999999999886655566 679999999987 578


Q ss_pred             EEEecCCcEEEEEec
Q 019482          304 LTASKEWGAMITKLT  318 (340)
Q Consensus       304 ~~~~~dg~i~iw~~~  318 (340)
                      ++++.||.++||.++
T Consensus       339 ~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         339 AAVEKDGQSFLEILD  353 (355)
T ss_dssp             EEEESSSCEEEEEEE
T ss_pred             EEEECCCcEEEEEEe
Confidence            899999999888775

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.8e-33  Score=229.51  Aligned_cols=250  Identities=15%  Similarity=0.172  Sum_probs=193.9

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      +.+|++++|+|..+ ..++++|+      .|+.|++|++................+..|.++|.+++|+++++++++++.
T Consensus        63 ~~~v~~v~fsP~~~-g~~lasgs------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~  135 (325)
T d1pgua1          63 SSVVTTVKFSPIKG-SQYLCSGD------ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE  135 (325)
T ss_dssp             TSCEEEEEECSSTT-CCEEEEEE------TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCCEEEEEEeeCCC-CCEEEEEe------CCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeec
Confidence            46899999998543 36777666      566799999864433222233344557789999999999999999887764


Q ss_pred             --CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCe-EEEccCCCcEEEEeCCCCceeeccc---cCccce
Q 019482           84 --NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR-FAAGGVDGHLRIMHWPSLRIILDEP---KAHKSV  157 (340)
Q Consensus        84 --d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~i  157 (340)
                        ++.+++|+.++++....+.       .|...|.+++|+|++.+ +++++.|+.+++||+++.+......   .+...|
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v  208 (325)
T d1pgua1         136 GRDNFGVFISWDSGNSLGEVS-------GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFV  208 (325)
T ss_dssp             CSSCSEEEEETTTCCEEEECC-------SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCE
T ss_pred             cccceEEEEeecccccceeee-------ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCcc
Confidence              5789999998877655543       37789999999998875 6788999999999998876554443   344579


Q ss_pred             eEEEecCC-CCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEc---cCCCcceEEEEEecCCcceEEEEECCC
Q 019482          158 LDMDFSLD-SEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFS---KDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       158 ~~~~~~~~-~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      .+++|+|+ +.+|++++.|+.|++||+++++.+..+..+. ..+..+.|+   |++++     +++++.|+.|++||+++
T Consensus       209 ~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~~~~dg~~-----l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         209 RDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ-EPVQGGIFALSWLDSQK-----FATVGADATIRVWDVTT  282 (325)
T ss_dssp             EEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT-BCCCSCEEEEEESSSSE-----EEEEETTSEEEEEETTT
T ss_pred             EEeeeccccceeccccccccceeeeeeccccccccccccc-cccccceeeeeccCCCE-----EEEEeCCCeEEEEECCC
Confidence            99999996 6789999999999999999999998887543 456666555   67776     78899999999999999


Q ss_pred             CcEEeeeeccCCC--eeEEEECCC-CCEEEEeeCCCcEEEEec
Q 019482          234 WNKIGHKRLLRKP--ASVLSISLD-GKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       234 ~~~~~~~~~~~~~--i~~~~~s~~-~~~l~~~~~dg~i~i~d~  273 (340)
                      ++++..+..+...  +..+++.+. +.+|++++.||.|++||+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            9998887766644  334444432 358899999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=217.16  Aligned_cols=267  Identities=14%  Similarity=0.178  Sum_probs=207.1

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT   83 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~   83 (340)
                      ...|+|++|..     +++|+|+      .|+.|++|+++        +.....++++|.+.|++++|  ++++|++|+.
T Consensus        15 ~~~V~c~~~d~-----~~l~sgs------~Dg~i~vWd~~--------~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~   73 (293)
T d1p22a2          15 SKGVYCLQYDD-----QKIVSGL------RDNTIKIWDKN--------TLECKRILTGHTGSVLCLQY--DERVIITGSS   73 (293)
T ss_dssp             CCCEEEEECCS-----SEEEEEE------SSSCEEEEESS--------SCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred             CCCEEEEEEcC-----CEEEEEe------CCCeEEEEECC--------CCcEEEEEecCCCCEeeeec--ccceeecccc
Confidence            45688887642     5677766      56679999987        55566789999999999987  5789999999


Q ss_pred             CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCce---eeccccCccceeEE
Q 019482           84 NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRI---ILDEPKAHKSVLDM  160 (340)
Q Consensus        84 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~i~~~  160 (340)
                      |+.|++|++..+........         .......+.+....++++..++.+.+|+..+...   ......+...+..+
T Consensus        74 D~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  144 (293)
T d1p22a2          74 DSTVRVWDVNTGEMLNTLIH---------HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  144 (293)
T ss_dssp             TSCEEEEESSSCCEEEEECC---------CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred             cccccccccccccccccccc---------cccccccccccccceeecccccceeEeeccccccccccccccccccccccc
Confidence            99999999988776544432         1223344556677899999999999999886553   23344555677777


Q ss_pred             EecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          161 DFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       161 ~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      .+.  ...+++++.|+.+++||+++++.+..+..+. ..+..+.+++  ..     +++++.|+.|++||+++.+.+...
T Consensus       145 ~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~-----l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         145 DFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-RGIACLQYRD--RL-----VVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             EEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEET--TE-----EEEEETTSCEEEEETTTCCEEEEE
T ss_pred             eec--ccccccccCCCceeeecCCCCcEEEEEcccc-cccccccCCC--Ce-----EEEecCCCEEEEEecccceeeeee
Confidence            666  4578889999999999999999988887544 4577776654  44     788899999999999999998888


Q ss_pred             eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce---------EeecccccccccceeeEEEecCCeEEEEEecCCc
Q 019482          241 RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME---------INHWSKRLHLGTSIALVEFCPTQRVVLTASKEWG  311 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  311 (340)
                      ..+...+..  +++++.+|++++.||.|++||+.+..         .+..+ .+| ..+|++++|+  +++|+++|.||.
T Consensus       215 ~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~H-~~~V~~v~~d--~~~l~s~s~Dg~  288 (293)
T d1p22a2         215 EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEH-SGRVFRLQFD--EFQIVSSSHDDT  288 (293)
T ss_dssp             CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCC-SSCCCCEEEC--SSCEEECCSSSE
T ss_pred             cccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEe-cCC-CCCEEEEEEc--CCEEEEEecCCE
Confidence            888777765  55778899999999999999986532         22222 356 5789999984  578999999999


Q ss_pred             EEEEE
Q 019482          312 AMITK  316 (340)
Q Consensus       312 i~iw~  316 (340)
                      |+|||
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-32  Score=224.48  Aligned_cols=264  Identities=14%  Similarity=0.132  Sum_probs=194.9

Q ss_pred             eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      .+...|+||.+.|.+ +++++|++||+|+.||.|+|||+.+++....+.       .|.+.|.+++|+|+  +|++++.|
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-------~h~~~V~~v~~~~~--~l~s~s~D   76 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-------GHTGGVWSSQMRDN--IIISGSTD   76 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECC-------CCSSCEEEEEEETT--EEEEEETT
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-------CCCCCEEEEEeCCC--ccccceec
Confidence            344678999999865 466789999999999999999999888766553       37889999999875  99999999


Q ss_pred             CcEEEEeCCCCceeeccccCccc--------------------------------------eeEEEecCCCCeEEEeeCC
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKS--------------------------------------VLDMDFSLDSEFLATTSTD  175 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~--------------------------------------i~~~~~~~~~~~l~~~~~d  175 (340)
                      +.+++|+................                                      .....+.+....+++++.|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  156 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD  156 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETT
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCC
Confidence            99999998754433221111100                                      0112233455678888999


Q ss_pred             CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCC
Q 019482          176 GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLD  255 (340)
Q Consensus       176 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  255 (340)
                      +.+++||.+..+.+..+..+.   .....+.+++..     +++++.|+.|++||++.++.+..+..|...+.++.+++ 
T Consensus       157 ~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~-----l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-  227 (342)
T d2ovrb2         157 FMVKVWDPETETCLHTLQGHT---NRVYSLQFDGIH-----VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-  227 (342)
T ss_dssp             SCEEEEEGGGTEEEEEECCCS---SCEEEEEECSSE-----EEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET-
T ss_pred             CeEEEeecccceeeEEEcCcc---cccccccCCCCE-----EEEEeCCCeEEEeecccceeeeEecccccceeEEecCC-
Confidence            999999999888888776443   334455567776     78899999999999999999999999998888877754 


Q ss_pred             CCEEEEeeCCCcEEEEeccCceEeecccccc-cccceeeEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCc--ccccc
Q 019482          256 GKYLAMGSKDGDICVVDVKKMEINHWSKRLH-LGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLS--LPLLH  332 (340)
Q Consensus       256 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~h  332 (340)
                       ++|++++.|+.|++||+...+....+.... +...+.++.+  +++++++|+.||.|++|+++.....+.+.  ....|
T Consensus       228 -~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~  304 (342)
T d2ovrb2         228 -NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS  304 (342)
T ss_dssp             -TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred             -CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCC
Confidence             699999999999999999887665553221 1334555555  56799999999999999997654322221  12345


Q ss_pred             ccccccC
Q 019482          333 SHSQNSV  339 (340)
Q Consensus       333 ~~~v~~v  339 (340)
                      ...|++|
T Consensus       305 ~~~v~~v  311 (342)
T d2ovrb2         305 GGVVWRI  311 (342)
T ss_dssp             TCEEEEE
T ss_pred             CCCEEEE
Confidence            5556554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-33  Score=234.30  Aligned_cols=268  Identities=11%  Similarity=0.061  Sum_probs=191.3

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEE------ec-CCCeEEE
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSF------SV-DGSRFAA  129 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~~-~~~~l~~  129 (340)
                      ...++|.+.|.++++++  +++++++.|+.|+|||....+........ .....+...+..+..      +. ++.++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKS-YSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGE-EEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccccee-EeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            34678999999999864  68999999999999997654321111000 000012233322222      11 2347789


Q ss_pred             ccCCCcEEEEeCCCCceeecc----------ccCccceeEEEecCC-----CCeEEEeeCCCeEEEEEccCCee------
Q 019482          130 GGVDGHLRIMHWPSLRIILDE----------PKAHKSVLDMDFSLD-----SEFLATTSTDGSARIWKTEDGVA------  188 (340)
Q Consensus       130 ~~~dg~i~~~d~~~~~~~~~~----------~~~~~~i~~~~~~~~-----~~~l~~~~~d~~v~iwd~~~~~~------  188 (340)
                      ++.||.|++|++.........          ..+...+..++|.++     +.++++++.|+++++|++.....      
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            999999999997643321111          112235677788765     46789999999999999853210      


Q ss_pred             --------E-EEe--ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee------eccCCCeeEEE
Q 019482          189 --------W-TFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK------RLLRKPASVLS  251 (340)
Q Consensus       189 --------~-~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~------~~~~~~i~~~~  251 (340)
                              . ...  ...+...+.+++|+|++.      +++++.|+.|++||+.+++++..+      ..|..+|.+++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~------lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~  238 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERGL------IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK  238 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTSE------EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCCE------EEEEeCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence                    0 111  122334588999999983      789999999999999998876544      35678999999


Q ss_pred             ECCCCCEEEEeeCCCc---EEEEeccCceEeeccc------------ccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          252 ISLDGKYLAMGSKDGD---ICVVDVKKMEINHWSK------------RLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       252 ~s~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      |+|+|++|++|+.|+.   |++||+++++.+..+.            .+| ...|++++|+||+++|+++|.|++|+||+
T Consensus       239 ~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~~l~S~s~D~~v~vWd  317 (393)
T d1sq9a_         239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWD  317 (393)
T ss_dssp             ECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             cccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence            9999999999999874   9999999987766543            246 57899999999999999999999999999


Q ss_pred             ecCCCCCCCCccccccccccc
Q 019482          317 LTVPADWKGLSLPLLHSHSQN  337 (340)
Q Consensus       317 ~~~~~~~~~~~~~~~h~~~v~  337 (340)
                      ++...   .+.....|...|.
T Consensus       318 ~~~g~---~~~~l~gH~~~v~  335 (393)
T d1sq9a_         318 VKTKE---RITTLNMHCDDIE  335 (393)
T ss_dssp             TTTTE---EEEEEECCGGGCS
T ss_pred             CCCCC---EEEEECCcCCccc
Confidence            96543   4555667776654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-32  Score=225.78  Aligned_cols=288  Identities=10%  Similarity=0.024  Sum_probs=207.9

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCC-CeEEEE
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSG-DDFVCS   81 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~   81 (340)
                      +...|++++|+|   +..+||+|+      .|+.|++|+++....     ........+|..+|.+++|+|++ .+|++|
T Consensus        10 h~d~I~~l~fsp---~~~~L~s~s------~Dg~v~iwd~~~~~~-----~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_          10 PKDYISDIKIIP---SKSLLLITS------WDGSLTVYKFDIQAK-----NVDLLQSLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             CSSCEEEEEEEG---GGTEEEEEE------TTSEEEEEEEETTTT-----EEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred             CCCCEEEEEEeC---CCCEEEEEE------CCCeEEEEEccCCCc-----ceEEEEecCCCCCEEEEEEeCCCCCEEEEc
Confidence            456699999999   445777665      567799999974432     11223344699999999999865 588999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeecc----ccC--cc
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDE----PKA--HK  155 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~----~~~--~~  155 (340)
                      +.|+.|++|++...........      .+........+.++...+++++.++.+++||++++......    ..+  ..
T Consensus        76 ~~d~~v~~w~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          76 TVQGEILKVDLIGSPSFQALTN------NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             ETTSCEEEECSSSSSSEEECBS------CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             ccccceeeeecccccccccccc------cccccccccccccccccccccccccccceeeccccccceeeecccccccccc
Confidence            9999999999987765444332      13344456667778889999999999999998654322211    111  12


Q ss_pred             ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe--ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCC
Q 019482          156 SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDIST  233 (340)
Q Consensus       156 ~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  233 (340)
                      ....+.+.+++..+++++.|+.|++||++..+.....  .........+..+.+.....    +++++.|+.+.+|+...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG----YACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE----EEEEETTSEEEEEECCT
T ss_pred             eeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCE----EEeecCCCeEEEEEecC
Confidence            3456677888899999999999999999876543222  12223345555555543321    67788899999999865


Q ss_pred             CcEE---------------eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEec
Q 019482          234 WNKI---------------GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       234 ~~~~---------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      ....               .....+...+++++|+|++++|++|+.||.|++||+++++.+..+...+   .+..++|+|
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~~~~s~  302 (342)
T d1yfqa_         226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKIAC  302 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEEEEEEE
T ss_pred             CcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEEEEEEe
Confidence            3211               1112344578999999999999999999999999999999887764333   456788999


Q ss_pred             CCeEEEEEecCCcEEEEEe
Q 019482          299 TQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~  317 (340)
                      +++++++++.|+.+++|..
T Consensus       303 ~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         303 SDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CSSEEEEEEECTHHHHCSS
T ss_pred             CCCEEEEEEcCCcEEEeee
Confidence            9999999999998888865

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-32  Score=219.85  Aligned_cols=250  Identities=17%  Similarity=0.143  Sum_probs=197.6

Q ss_pred             eeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC
Q 019482           54 LVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD  133 (340)
Q Consensus        54 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  133 (340)
                      .+..+++||.++|++++|+|    |++|+.||.|++||+.+...            .|...|.++.+++++ .+++++.|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~------------~h~~~V~~~~~~~~~-~~~s~s~D   66 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ------------DHSNLIVSLDNSKAQ-EYSSISWD   66 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEEC------------CCCSCEEEEECCSTT-CCEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCCC------------CCCCCEEEEEecCCC-eEEEEeec
Confidence            34568999999999999987    99999999999999865431            377899999998765 67889999


Q ss_pred             CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF  213 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  213 (340)
                      +++++|++...+       ....+..+.+++++..+++++ ++.+.+|+..+++.+..+....    ...++++++..+ 
T Consensus        67 ~~v~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-  133 (287)
T d1pgua2          67 DTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNS----PGSAVSLSQNYV-  133 (287)
T ss_dssp             TEEEETTEEEEE-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECSS----CEEEEEECSSEE-
T ss_pred             cccccccccccc-------cccceeeeeeccCCceEEEee-cccceeeeccceeeeeeccccc----eeeeeeccCcce-
Confidence            999999975422       223567888998887777665 6678999999998888776332    234567777652 


Q ss_pred             EEEEEecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482          214 LFCTVQRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (340)
Q Consensus       214 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~  292 (340)
                         ++.+..++.+++|++...+...... .+...+++++|+|++++|++|+.||.|++||+.+++........| ..+|.
T Consensus       134 ---~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h-~~~v~  209 (287)
T d1pgua2         134 ---AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKIN  209 (287)
T ss_dssp             ---EEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEE
T ss_pred             ---eeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccc-ccccc
Confidence               3444555689999998766544443 456789999999999999999999999999999988776655666 67899


Q ss_pred             eEEEecC----------CeEEEEEecCCcEEEEEecCCCCCCCCccccccccccccC
Q 019482          293 LVEFCPT----------QRVVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQNSV  339 (340)
Q Consensus       293 ~~~~~~~----------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~~v  339 (340)
                      +++|+|+          +.+|++|+.|+.|+||+++.+.  +.......|...|++|
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v  264 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNL  264 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCeEEE
Confidence            9999874          4689999999999999997654  3556677899888776

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.8e-32  Score=223.35  Aligned_cols=255  Identities=13%  Similarity=0.116  Sum_probs=189.0

Q ss_pred             EEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecC-CCeEEEccCCCc
Q 019482           57 YVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVD-GSRFAAGGVDGH  135 (340)
Q Consensus        57 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~  135 (340)
                      ...++|++.|++|+|+|++++||+|+.||+|+|||+........+...    ..|..+|.+++|+|+ +.+|++|+.||.
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~----~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS----LRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE----EECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEe----cCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            456789999999999999999999999999999999876543333221    137889999999986 458999999999


Q ss_pred             EEEEeCCCCceeeccccCcc-ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee----cC-CCCceeeEEEccCC
Q 019482          136 LRIMHWPSLRIILDEPKAHK-SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT----RN-SDEKIELCRFSKDG  209 (340)
Q Consensus       136 i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~----~~-~~~~v~~~~~~~~~  209 (340)
                      |++|++...........+.. ......+.++...+++++.|+++++||++.+.......    .. .........+.+.+
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            99999988776665555544 34455566788899999999999999997644332222    11 12234456677777


Q ss_pred             CcceEEEEEecCCcceEEEEECCCCcEEee---eeccCCCeeEEEECC-CCCEEEEeeCCCcEEEEeccCceEeecc---
Q 019482          210 TKPFLFCTVQRGDKALLAVYDISTWNKIGH---KRLLRKPASVLSISL-DGKYLAMGSKDGDICVVDVKKMEINHWS---  282 (340)
Q Consensus       210 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---  282 (340)
                      ..     ++.++.|+.|++||++..+....   .........+..+.+ ++..+++++.||.+.+|+..........   
T Consensus       161 ~~-----~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         161 SR-----LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             SE-----EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             Cc-----eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence            76     68888999999999987654322   223334455555544 6789999999999999988653322111   


Q ss_pred             -----------cccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          283 -----------KRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       283 -----------~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                                 ...| ...+++++|+|++++|++|+.||.|++||++...
T Consensus       236 ~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNL-AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             EEEECCCCCTTCCSS-CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             ceeeeeeeccCCCcc-cccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence                       1122 3578999999999999999999999999997544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2.2e-31  Score=222.21  Aligned_cols=276  Identities=11%  Similarity=0.046  Sum_probs=203.2

Q ss_pred             eEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCC-
Q 019482            7 VTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNG-   85 (340)
Q Consensus         7 v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-   85 (340)
                      .++-.|+|.  +++++|+++       .+.+.+|+.+  +      ..... + +|...|.+++|+|||++|++++.+. 
T Consensus         5 ~~~~~fSP~--dG~~~a~~~-------~g~v~v~d~~--~------~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g   65 (360)
T d1k32a3           5 KFAEDFSPL--DGDLIAFVS-------RGQAFIQDVS--G------TYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREG   65 (360)
T ss_dssp             GGEEEEEEC--GGGCEEEEE-------TTEEEEECTT--S------SBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTE
T ss_pred             hhcccccCC--CCCEEEEEE-------CCeEEEEECC--C------CcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCC
Confidence            356789984  235566443       3457788654  2      22222 2 6899999999999999998776553 


Q ss_pred             -CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecC
Q 019482           86 -GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSL  164 (340)
Q Consensus        86 -~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  164 (340)
                       .|++||..+++... +       ..|...+.+++|+|++++|++++.++.+++|++.+++.......+...+.+++|+|
T Consensus        66 ~~v~v~d~~~~~~~~-~-------~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  137 (360)
T d1k32a3          66 DFLGIYDYRTGKAEK-F-------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  137 (360)
T ss_dssp             EEEEEEETTTCCEEE-C-------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             CEEEEEECCCCcEEE-e-------eCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhcc
Confidence             79999998876432 2       13778999999999999999999999999999999988877777777899999999


Q ss_pred             CCCeEEEee----------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCC
Q 019482          165 DSEFLATTS----------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTW  234 (340)
Q Consensus       165 ~~~~l~~~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  234 (340)
                      +|++|+.+.          .++.+++||+.+++......  +...+..+.|+|+|+.     ++.++.++.+.+||....
T Consensus       138 dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~-----l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFDADSKN-----LYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEEECTTSCE-----EEEEESCCCCCEECSSSS
T ss_pred             ceeeeeeeccccccceeeccccceeeeccccCceeeecc--cccccccccccCCCCE-----EEEEeCCCceEccccccc
Confidence            999998653          34579999999887655443  3456889999999997     677788888999986543


Q ss_pred             cEE-------eeeecc------------------------------------CCCeeEEEECCCC-------------CE
Q 019482          235 NKI-------GHKRLL------------------------------------RKPASVLSISLDG-------------KY  258 (340)
Q Consensus       235 ~~~-------~~~~~~------------------------------------~~~i~~~~~s~~~-------------~~  258 (340)
                      ...       .....+                                    .+....+...+++             .+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (360)
T d1k32a3         211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY  290 (360)
T ss_dssp             CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred             ceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeE
Confidence            211       111100                                    1112223333322             23


Q ss_pred             EEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCCC
Q 019482          259 LAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPAD  322 (340)
Q Consensus       259 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~  322 (340)
                      +++++.++.|++||+.+++...     + ...|.+++|+|||++|++++.||.|++|+++.+..
T Consensus       291 ~~~~~~~~~i~~~d~~~~~~~~-----~-~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         291 YQGAPEKGVLLKYDVKTRKVTE-----V-KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             HHCCCCCEEEEEEETTTCCEEE-----E-EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             EEecCCCCEEEEEECCCCeEEE-----e-cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            4455668899999998876542     2 34689999999999999999999999999988775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-29  Score=202.70  Aligned_cols=256  Identities=13%  Similarity=0.154  Sum_probs=197.8

Q ss_pred             EecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEE
Q 019482           59 FDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRI  138 (340)
Q Consensus        59 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~  138 (340)
                      ..+|...|+|++|  +|++||+|+.||.|+|||+.+++....+..       |.+.|.+++|  ++++|++|+.|+.|++
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-------H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG-------HTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC-------CSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEec-------CCCCEeeeec--ccceeecccccccccc
Confidence            4567888998765  789999999999999999998887766642       7889999887  5779999999999999


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEe--ecCCCCceeeEEEccCCCcceEEE
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFL--TRNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      |++..+............  ...+.+....++++..++.+.+|+..........  ...+...+..+.+.+..       
T Consensus        80 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------  150 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCEA--VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY-------  150 (293)
T ss_dssp             EESSSCCEEEEECCCCSC--EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTE-------
T ss_pred             cccccccccccccccccc--cccccccccceeecccccceeEeeccccccccccccccccccccccceecccc-------
Confidence            999988776655444333  3345556678999999999999999876543222  23445567777766542       


Q ss_pred             EEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEE
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEF  296 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~  296 (340)
                      +.+++.|+.+++||.++++.+..+..+...+..+.++  +.++++++.||.|++||+++.+.+.... .+ ...+.  .+
T Consensus       151 ~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~~~v~--~~  224 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-GH-EELVR--CI  224 (293)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-CC-SSCEE--EE
T ss_pred             cccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeec-cc-ceeee--ec
Confidence            5677789999999999999998888888888777764  5689999999999999999988877653 34 34554  46


Q ss_pred             ecCCeEEEEEecCCcEEEEEecCCCCC------CCCccccccccccccCC
Q 019482          297 CPTQRVVLTASKEWGAMITKLTVPADW------KGLSLPLLHSHSQNSVS  340 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~h~~~v~~vs  340 (340)
                      ++++.+|++++.||.|++|++......      ........|.+.|++|+
T Consensus       225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~  274 (293)
T d1p22a2         225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ  274 (293)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE
T ss_pred             cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEE
Confidence            678899999999999999998653321      22344567888887763

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1e-27  Score=204.72  Aligned_cols=278  Identities=9%  Similarity=0.025  Sum_probs=185.0

Q ss_pred             CCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCC
Q 019482           33 SPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDA  112 (340)
Q Consensus        33 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  112 (340)
                      .++.|++|+..        +.....+++.|. .+..++|+|||+++++++.|+.+++||+.+++.........  ...|.
T Consensus        40 ~dg~v~vwD~~--------t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~--~~~~~  108 (426)
T d1hzua2          40 DAGQIALVDGD--------SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GIEAR  108 (426)
T ss_dssp             TTTEEEEEETT--------TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CSEEE
T ss_pred             CCCEEEEEECC--------CCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC--CCCCc
Confidence            57789999987        555556777774 59999999999999999999999999998876433221110  11244


Q ss_pred             CCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceeeccccCccceeE-----------EEecCCCCeEEEee-CCCeEE
Q 019482          113 GPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLD-----------MDFSLDSEFLATTS-TDGSAR  179 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~~l~~~~-~d~~v~  179 (340)
                      +.+.+++|+|||++++++ ..++.+++||..+++.......+...+..           +.+++++..++... ..+.+.
T Consensus       109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~  188 (426)
T d1hzua2         109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  188 (426)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            556777888999987554 57899999999998877666555444433           44455554444333 234455


Q ss_pred             EEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE-------------------------------------------
Q 019482          180 IWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC-------------------------------------------  216 (340)
Q Consensus       180 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------------------------------  216 (340)
                      +++.................+..+.|+|++++++...                                           
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (426)
T d1hzua2         189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW  268 (426)
T ss_dssp             EEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEE
T ss_pred             EEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceE
Confidence            5554444332222223445678899999988643210                                           


Q ss_pred             EEecCCcceEEEEECCC-------CcEEeeeeccCCCeeEEEECCCCCEEEE-------eeCCCcEEEEeccCceEeecc
Q 019482          217 TVQRGDKALLAVYDIST-------WNKIGHKRLLRKPASVLSISLDGKYLAM-------GSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      ......++.+.+|+...       ++....+..|...+..++|+||+++|++       ++.+++|++||+.+++....+
T Consensus       269 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         269 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             EEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             EeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            11222345555555432       2455566777788999999999999995       456789999999987755433


Q ss_pred             cc-------cccccceeeEEEecCCeEEE-EE----ecCCcEEEEEecCCC
Q 019482          283 KR-------LHLGTSIALVEFCPTQRVVL-TA----SKEWGAMITKLTVPA  321 (340)
Q Consensus       283 ~~-------~~~~~~i~~~~~~~~~~~l~-~~----~~dg~i~iw~~~~~~  321 (340)
                      ..       ......+.+++|||||++++ ++    +.+|.|+|||....+
T Consensus       349 ~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         349 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             ECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             eccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence            11       11134688999999998664 32    357889999987544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.95  E-value=1.6e-24  Score=175.71  Aligned_cols=262  Identities=16%  Similarity=0.160  Sum_probs=201.1

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCC
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  110 (340)
                      ..++.|.+|+..        +.....+++.. ..+..++|+|||++|+ ++..++.|++||+.+++....+..       
T Consensus         9 ~~~~~v~v~D~~--------t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-------   72 (301)
T d1l0qa2           9 SESDNISVIDVT--------SNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-------   72 (301)
T ss_dssp             TTTTEEEEEETT--------TTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-------
T ss_pred             CCCCEEEEEECC--------CCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec-------
Confidence            356779999876        44444555533 5588999999999875 666789999999999887665532       


Q ss_pred             CCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEccCCee
Q 019482          111 DAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVA  188 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~  188 (340)
                       ...+..+.|++++.+++ ++..++.+.+|+..+++....+. +.....++.|+|+++.++ ++..++.+.+|+..+.+.
T Consensus        73 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  150 (301)
T d1l0qa2          73 -GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (301)
T ss_dssp             -SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             -cccccccccccccccccccccccceeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence             24578999999998654 55667889999999888776554 445678899999998765 555688999999999998


Q ss_pred             EEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC---C
Q 019482          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---D  265 (340)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---d  265 (340)
                      +..+...  ..+..+.++|++..+    +.....++.+.+|+....+........ .....++++++++.++++..   +
T Consensus       151 ~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         151 INTVSVG--RSPKGIAVTPDGTKV----YVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             EEEEECC--SSEEEEEECTTSSEE----EEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSC
T ss_pred             eeecccC--CCceEEEeeccccce----eeecccccccccccccceeeeeccccc-CCcceeecccccccccccccccee
Confidence            8887643  358899999999863    344556678888888877765554443 45678899999998876643   4


Q ss_pred             CcEEEEeccCceEeecccccccccceeeEEEecCCeEE-EEEecCCcEEEEEecCCC
Q 019482          266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVV-LTASKEWGAMITKLTVPA  321 (340)
Q Consensus       266 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~  321 (340)
                      +.|++||+.+++....+..   ...+.+++|+|||++| ++++.|+.|++||+....
T Consensus       224 ~~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             CEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eeeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            6799999999998776542   3468999999999876 677889999999987544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=2.4e-26  Score=191.32  Aligned_cols=253  Identities=13%  Similarity=0.060  Sum_probs=179.0

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      .++.+|.+++|+|+   ++.+++++.    .....+.+|+.+.        .. ...+..|...|.+++|+|+|++|+++
T Consensus        40 ~~~~~v~~~~~spD---g~~l~~~~~----~~g~~v~v~d~~~--------~~-~~~~~~~~~~v~~~~~spdg~~l~~~  103 (360)
T d1k32a3          40 PEPLRIRYVRRGGD---TKVAFIHGT----REGDFLGIYDYRT--------GK-AEKFEENLGNVFAMGVDRNGKFAVVA  103 (360)
T ss_dssp             SCCSCEEEEEECSS---SEEEEEEEE----TTEEEEEEEETTT--------CC-EEECCCCCCSEEEEEECTTSSEEEEE
T ss_pred             cCCCCEEEEEECCC---CCEEEEEEc----CCCCEEEEEECCC--------Cc-EEEeeCCCceEEeeeeccccccccee
Confidence            35678999999994   445554431    1223588887762        22 23467899999999999999999999


Q ss_pred             ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc----------cCCCcEEEEeCCCCceeeccc
Q 019482           82 TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG----------GVDGHLRIMHWPSLRIILDEP  151 (340)
Q Consensus        82 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~dg~i~~~d~~~~~~~~~~~  151 (340)
                      +.++.+++|++.+.+.......       +...+.+++|+|+|++|+.+          ..++.+++|++.+++... ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~  175 (360)
T d1k32a3         104 NDRFEIMTVDLETGKPTVIERS-------REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-AT  175 (360)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC-------SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CS
T ss_pred             ccccccccccccccceeeeeec-------ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ec
Confidence            9999999999988876554432       55778899999999999854          345679999998876654 44


Q ss_pred             cCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee-------EEEeecCC----------------------------
Q 019482          152 KAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA-------WTFLTRNS----------------------------  196 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~-------~~~~~~~~----------------------------  196 (340)
                      .+...+..+.|+|+|++|++++.++.+++|+......       ...+..+.                            
T Consensus       176 ~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  255 (360)
T d1k32a3         176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR  255 (360)
T ss_dssp             CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGG
T ss_pred             ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccc
Confidence            5566788899999999999999999999998654321       11111000                            


Q ss_pred             -------CCceeeEEEccCCCcceE--------EEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEE
Q 019482          197 -------DEKIELCRFSKDGTKPFL--------FCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAM  261 (340)
Q Consensus       197 -------~~~v~~~~~~~~~~~~~~--------~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  261 (340)
                             .+....+...+++.....        ..++.++.++.|++||+.+++..    .+...+.+++|+|||++|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~  331 (360)
T d1k32a3         256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMV  331 (360)
T ss_dssp             CEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEE
T ss_pred             eeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEE
Confidence                   001111222222111000        00244556889999999987653    23346899999999999999


Q ss_pred             eeCCCcEEEEeccCceEeecc
Q 019482          262 GSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       262 ~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      ++.||.|++||+++++....+
T Consensus       332 ~~~Dg~i~v~d~~~~~~~~~~  352 (360)
T d1k32a3         332 RKDDGKIYTFPLEKPEDERTV  352 (360)
T ss_dssp             EETTSCEEEEESSCTTSCEEC
T ss_pred             EECCCeEEEEECCCCCcceEE
Confidence            999999999999988766554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=9.4e-25  Score=179.85  Aligned_cols=271  Identities=12%  Similarity=-0.018  Sum_probs=197.0

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEEEec--CCCCeeEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCC
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDE--SEGDPMTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPP  108 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  108 (340)
                      +.++.|.+|+..        +......+..  +...+.+++|+|||++++ +++.++.|.+||+.+++..........  
T Consensus         8 ~~d~~v~v~D~~--------s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~--   77 (337)
T d1pbyb_           8 ARPDKLVVIDTE--------KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP--   77 (337)
T ss_dssp             ETTTEEEEEETT--------TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT--
T ss_pred             cCCCEEEEEECC--------CCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC--
Confidence            367889999987        4444455544  445688999999999875 567789999999999887665533211  


Q ss_pred             CCCCCCeEEEEEecCCCeEEEcc------------CCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCC
Q 019482          109 LQDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDG  176 (340)
Q Consensus       109 ~~~~~~v~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  176 (340)
                      ..+...+..++|+|++++++++.            .+..+.+||..+++....+. ....+..++|+|+|+++++++.  
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--  154 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLGR--  154 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEESS--
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEcC--
Confidence            11223456799999999988775            35788999999888776654 4456889999999999999864  


Q ss_pred             eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcce-------E--E-E---------EEecCCcceEEEEECCCCcEE
Q 019482          177 SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPF-------L--F-C---------TVQRGDKALLAVYDISTWNKI  237 (340)
Q Consensus       177 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~--~-~---------~~~~~~d~~i~i~d~~~~~~~  237 (340)
                      .+.+||..+++....+..+..  .....+.|++..+.       .  . .         ......+..+.+||..++...
T Consensus       155 ~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (337)
T d1pbyb_         155 DLHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             SEEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             CcceeeeecCcEEEEeecCCc--cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE
Confidence            478899999988877653221  22222333322110       0  0 0         112234567899999988755


Q ss_pred             ee-eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEE
Q 019482          238 GH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       238 ~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~  316 (340)
                      .. +..+......+.++|++.+++.+  ++.|++||+.+++.+..+..   ...+.+++|+|||++|++++.|+.|+|||
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC---CCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            43 44556678889999999998766  57899999999998887643   45789999999999999999999999999


Q ss_pred             ecCCCC
Q 019482          317 LTVPAD  322 (340)
Q Consensus       317 ~~~~~~  322 (340)
                      ....+.
T Consensus       308 ~~t~~~  313 (337)
T d1pbyb_         308 AETLEK  313 (337)
T ss_dssp             TTTCCE
T ss_pred             CCCCcE
Confidence            976553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=4.7e-24  Score=181.64  Aligned_cols=274  Identities=9%  Similarity=-0.054  Sum_probs=183.8

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCC
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQD  111 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  111 (340)
                      ..++.+.+|+.+        +......+..| ..+..++|+|||+++++++.|+.+++||+.+++.........  ...|
T Consensus        39 ~d~g~v~v~D~~--------t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~--~~~~  107 (432)
T d1qksa2          39 RDAGQIALIDGS--------TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEA  107 (432)
T ss_dssp             TTTTEEEEEETT--------TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEE
T ss_pred             cCCCEEEEEECC--------CCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec--CCCC
Confidence            366779999987        55666677777 469999999999999999999999999998765322111000  0124


Q ss_pred             CCCeEEEEEecCCCeE-EEccCCCcEEEEeCCCCceeeccccC-----------ccceeEEEecCCCCeE-EEeeCCCeE
Q 019482          112 AGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKA-----------HKSVLDMDFSLDSEFL-ATTSTDGSA  178 (340)
Q Consensus       112 ~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l-~~~~~d~~v  178 (340)
                      .+.+.+..|+|||++| ++++.++.|++||..+++.+..+..+           ......+.++|++..+ ++...++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            4556666788899976 67788999999999998877654432           2345678899988875 556678999


Q ss_pred             EEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec----------------
Q 019482          179 RIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL----------------  242 (340)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----------------  242 (340)
                      .+||..+.+............+..++|+|+|+++    ++++..++.+.++|..+++.+.....                
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~----~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~  263 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF----ITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP  263 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE----EEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred             EEEEccCCCcceEEEEcccCccccceECCCCCEE----EEeccccceEEEeecccceEEEEeccCccccccCcccceecC
Confidence            9999988776554443455568999999999973    34555667788888776443222110                


Q ss_pred             ----------------------------cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE----------------
Q 019482          243 ----------------------------LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI----------------  278 (340)
Q Consensus       243 ----------------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~----------------  278 (340)
                                                  +...+....++|++..+++++.++..++|+..+...                
T Consensus       264 ~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~l  343 (432)
T d1qksa2         264 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  343 (432)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhh
Confidence                                        011234445566666566665555555554322110                


Q ss_pred             --------e--------ecccccccccceeeEEEecCCeEEEEEe-----cCCcEEEEEecCCCC
Q 019482          279 --------N--------HWSKRLHLGTSIALVEFCPTQRVVLTAS-----KEWGAMITKLTVPAD  322 (340)
Q Consensus       279 --------~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~  322 (340)
                              .        ..+ ..| ...+.+++|+|||++++.+.     .+|.|.|||-...+.
T Consensus       344 a~~s~d~~~k~w~~~~~~~l-~~~-~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         344 TGDGSDPEFKTLPIAEWAGI-TEG-QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             CCSSSCCCEEEECHHHHHTC-CSS-CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cccccCCceEeccccccccc-CCC-CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence                    0        001 122 34688999999998775543     468899999876553

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=3.5e-24  Score=177.07  Aligned_cols=295  Identities=11%  Similarity=-0.042  Sum_probs=205.9

Q ss_pred             eeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEe-cCCCCeeEEEEcCCCCeEE-EEecCCCEE
Q 019482           11 SWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFD-ESEGDPMTIAVNPSGDDFV-CSTTNGGCK   88 (340)
Q Consensus        11 ~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~-~~~~d~~i~   88 (340)
                      +|++   +..++++++      .++.|.+|+..        +.....+++ .|...+.+++|+|||++++ ++..++.|+
T Consensus         3 a~~~---~~~~l~~~~------~~~~v~v~D~~--------t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~   65 (346)
T d1jmxb_           3 ALKA---GHEYMIVTN------YPNNLHVVDVA--------SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY   65 (346)
T ss_dssp             CCCT---TCEEEEEEE------TTTEEEEEETT--------TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred             cCCC---CCcEEEEEc------CCCEEEEEECC--------CCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEE
Confidence            5566   345666555      56779999987        445555555 3566789999999999875 555789999


Q ss_pred             EEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc------------CCCcEEEEeCCCCceeeccccCc--
Q 019482           89 LFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILDEPKAH--  154 (340)
Q Consensus        89 iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~~~~~~--  154 (340)
                      +||+.+++......... ....+...+..++|+|||+++++++            .++.+.+|+..+++....+..+.  
T Consensus        66 ~~d~~t~~~~~~~~~~~-~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  144 (346)
T d1jmxb_          66 GIDLDTCKNTFHANLSS-VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  144 (346)
T ss_dssp             EEETTTTEEEEEEESCC-STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             EEeCccCeeeeeecccc-cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc
Confidence            99999988765543221 1111223456799999999888765            46778999988776554443322  


Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE-------------------
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF-------------------  215 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------------------  215 (340)
                      ..+..+.+++++..++++   +.+.+|++.+++.+..+..+  .....+.++|++..++..                   
T Consensus       145 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (346)
T d1jmxb_         145 RQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLR--NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  219 (346)
T ss_dssp             SSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECST--TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecC--CCccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence            346667777777666543   46899999999888877533  235566677766542110                   


Q ss_pred             --EEEecCCcceEEEEECCCCcEEee-eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccccee
Q 019482          216 --CTVQRGDKALLAVYDISTWNKIGH-KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIA  292 (340)
Q Consensus       216 --~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~  292 (340)
                        .+.....+..+.+||..++..... ...+...+..+.+++++.+++.... +.|.+||..+++.+..+..   +..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~---~~~~~  295 (346)
T d1jmxb_         220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANL---DHTYY  295 (346)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEEC---SSCCC
T ss_pred             ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcC---CCCEE
Confidence              012233456688899888775443 4456677888999999888887764 5799999999998877643   34699


Q ss_pred             eEEEecCCeEEEEEecCCcEEEEEecCCCCCCCCcccccc
Q 019482          293 LVEFCPTQRVVLTASKEWGAMITKLTVPADWKGLSLPLLH  332 (340)
Q Consensus       293 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h  332 (340)
                      +++|+|||++|++++.|+.|+|||....+..+.+.++..+
T Consensus       296 ~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence            9999999999999999999999999765543334444443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=4.8e-21  Score=154.93  Aligned_cols=250  Identities=13%  Similarity=0.110  Sum_probs=187.2

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEE-Ee
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVC-ST   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~   82 (340)
                      +..+..++|+|+..  .+++.+.      .++.|.+|++.        +......+..|. .+..++|++++..+++ +.
T Consensus        31 g~~p~~va~spdG~--~l~v~~~------~~~~i~v~d~~--------t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   93 (301)
T d1l0qa2          31 GSNPMGAVISPDGT--KVYVANA------HSNDVSIIDTA--------TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNM   93 (301)
T ss_dssp             SSSEEEEEECTTSS--EEEEEEG------GGTEEEEEETT--------TTEEEEEEECSS-SEEEEEECTTSSEEEEEET
T ss_pred             CCCceEEEEeCCCC--EEEEEEC------CCCEEEEEECC--------CCceeeeeeccc-ccccccccccccccccccc
Confidence            34567899999543  3444333      45679999887        444555666664 5789999999986654 55


Q ss_pred             cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEEeCCCCceeeccccCccceeEEE
Q 019482           83 TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMD  161 (340)
Q Consensus        83 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~  161 (340)
                      .++.+.+|+..+++....+.        +...+.++.|+|+++.++ ++..++.+.+|+..+......+. ....+..+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  164 (301)
T d1l0qa2          94 ASSTLSVIDTTSNTVAGTVK--------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIA  164 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEE--------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEE
T ss_pred             ccceeeecccccceeeeecc--------ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc-cCCCceEEE
Confidence            66789999998887655543        345678999999998765 55667889999999888776554 345678899


Q ss_pred             ecCCCCeEEEeeCC-CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee
Q 019482          162 FSLDSEFLATTSTD-GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK  240 (340)
Q Consensus       162 ~~~~~~~l~~~~~d-~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  240 (340)
                      ++|+++.+++++.+ +.+.+|+....+.......  ...+..++|++++..+++  ......++.|.+||+.+++.+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~v--~~~~~~~~~v~v~D~~t~~~~~~~  240 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYV--TNVDKYFNTVSMIDTGTNKITARI  240 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEE--EEECSSCCEEEEEETTTTEEEEEE
T ss_pred             eeccccceeeecccccccccccccceeeeecccc--cCCcceeecccccccccc--ccccceeeeeeeeecCCCeEEEEE
Confidence            99999988777654 6777888877776666653  345788999999997432  334456789999999999987776


Q ss_pred             eccCCCeeEEEECCCCCEE-EEeeCCCcEEEEeccCceEeecccc
Q 019482          241 RLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKKMEINHWSKR  284 (340)
Q Consensus       241 ~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~  284 (340)
                      ..+ ..+..++|+|||++| ++++.|+.|++||+++++.+..+..
T Consensus       241 ~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         241 PVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            654 467899999999987 4667789999999999998876643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3e-21  Score=158.49  Aligned_cols=275  Identities=11%  Similarity=0.067  Sum_probs=184.5

Q ss_pred             cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCC
Q 019482           32 SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQ  110 (340)
Q Consensus        32 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~  110 (340)
                      ..++.|++|+++..+.      ........|.+.|..++|+|||++|++++ .|+.|++|++.............    .
T Consensus        11 ~~~~~I~v~~~~~~~~------l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~----~   80 (333)
T d1ri6a_          11 PESQQIHVWNLNHEGA------LTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES----A   80 (333)
T ss_dssp             GGGTEEEEEEECTTSC------EEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE----E
T ss_pred             CCCCcEEEEEEcCCCC------eEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec----c
Confidence            3677899999984431      12233345788999999999999986555 47899999998665433332211    1


Q ss_pred             CCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceee--ccccCccceeEEEecCCCCeEEEee-CCCeEEEEEccCC
Q 019482          111 DAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIIL--DEPKAHKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDG  186 (340)
Q Consensus       111 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~  186 (340)
                      +...+..++|+|||++|++++. ++.|.+|+........  ....+...+.++.++|++++++.++ .+..+.+|+....
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            3345678999999999988875 6789999877654332  2334445788999999999888776 4567999998765


Q ss_pred             eeEEE-----eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcE----Eeeee------ccCCCeeEEE
Q 019482          187 VAWTF-----LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNK----IGHKR------LLRKPASVLS  251 (340)
Q Consensus       187 ~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~------~~~~~i~~~~  251 (340)
                      .....     ...........++|++++...    .......+...+++......    .....      ........+.
T Consensus       161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (333)
T d1ri6a_         161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA----YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH  236 (333)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred             CcceeeeceeeeeecCCCccEEEEeccceeE----EeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE
Confidence            33221     122233456889999999863    34445566777777654321    11111      1123456788


Q ss_pred             ECCCCCEEEEe-eCCCcEEEEeccCceEeeccc-ccccccceeeEEEecCCeEEEEEe-cCCcEEEEEecCC
Q 019482          252 ISLDGKYLAMG-SKDGDICVVDVKKMEINHWSK-RLHLGTSIALVEFCPTQRVVLTAS-KEWGAMITKLTVP  320 (340)
Q Consensus       252 ~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~  320 (340)
                      +++++++++.. ..++.+.+|++.......... .......+.+++|+|||++|++++ .++.|.+|+++..
T Consensus       237 ~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         237 ITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             EecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence            99999877665 456789999887543322221 111234678999999999877665 5689999998754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=9.8e-21  Score=158.10  Aligned_cols=305  Identities=7%  Similarity=-0.066  Sum_probs=197.3

Q ss_pred             CCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe
Q 019482            3 GGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST   82 (340)
Q Consensus         3 ~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~   82 (340)
                      ..+|+.+++++|+..  .+++...    ...+....+|-+|...      .....++..+...  .++|+|||++|+++.
T Consensus        19 ~~~p~~~~a~spdg~--~~~~~~~----~~~~~~~~v~v~D~~t------g~~~~~~~~~~~~--~~a~SpDG~~l~va~   84 (373)
T d2madh_          19 ADGPTNDEAPGADGR--RSYINLP----AHHSAIIQQWVLDAGS------GSILGHVNGGFLP--NPVAAHSGSEFALAS   84 (373)
T ss_pred             CCCCccccccCCCCC--EEEEEcc----cccCCCceEEEEECCC------CCEEEEEeCCCCc--cEEEcCCCCEEEEEe
Confidence            357889999999654  3333322    1223334455555333      3333445555433  799999999998875


Q ss_pred             ----------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc--CCCcEEEEeCCCCceeecc
Q 019482           83 ----------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDE  150 (340)
Q Consensus        83 ----------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~  150 (340)
                                .++.|.+||..+++....+................+.|+++++.++...  .++.+.+|+..+.+.... 
T Consensus        85 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~-  163 (373)
T d2madh_          85 TSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL-  163 (373)
T ss_pred             ecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE-
Confidence                      3577999999998876655432221111122345688999998766554  456788999877654432 


Q ss_pred             ccCccceeEEEecCCCCe-EEEeeCCCeEEEEEccCCeeEEEeecCC-----CCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          151 PKAHKSVLDMDFSLDSEF-LATTSTDGSARIWKTEDGVAWTFLTRNS-----DEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~-l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                         .....++.++|+++. +++.+.|+.+.+|+...++.........     ........+++++.      .+..+.++
T Consensus       164 ---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  234 (373)
T d2madh_         164 ---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR------IVWPVYSG  234 (373)
T ss_pred             ---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce------EEEecCCc
Confidence               234567899998875 5678899999999998887766554211     11234455666665      45566788


Q ss_pred             eEEEEECCCCcEEeeee--cc----------CCCeeEEEECCCCCEEE----------EeeCCCcEEEEeccCceEeecc
Q 019482          225 LLAVYDISTWNKIGHKR--LL----------RKPASVLSISLDGKYLA----------MGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~--~~----------~~~i~~~~~s~~~~~l~----------~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      .+.+|+...........  ..          ......++++|++..++          ....++.+.+||..+++.+..+
T Consensus       235 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         235 KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe
Confidence            89999988765321111  11          12234456667666554          3455678999999999988766


Q ss_pred             cccccccceeeEEEecCCe--EEEEEecCCcEEEEEecCCCCCCCCccccccccccc
Q 019482          283 KRLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKLTVPADWKGLSLPLLHSHSQN  337 (340)
Q Consensus       283 ~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~h~~~v~  337 (340)
                      ..   +..+..++|+|||+  ++++++.|+.|+|||+...+   .+.....|....+
T Consensus       315 ~~---~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~---~~~~~~~~g~~P~  365 (373)
T d2madh_         315 SL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD---QDQSTVELGSGPQ  365 (373)
T ss_pred             cC---CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC---EEEEECCCCCCCc
Confidence            43   45789999999997  45788999999999997655   3444444444333

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=8.1e-22  Score=167.71  Aligned_cols=194  Identities=11%  Similarity=0.028  Sum_probs=149.6

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee--ec---
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII--LD---  149 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~--~~---  149 (340)
                      .-++++.+.+|+|.|||..+++....+..       + ..+..++|+|||+++++++.|+.|++||+.+++..  ..   
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~-------g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDT-------G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEEC-------S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeC-------C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            33457888999999999999998877643       2 36899999999999999999999999999887632  22   


Q ss_pred             cccCccceeEEEecCCCCeE-EEeeCCCeEEEEEccCCeeEEEeecC----------CCCceeeEEEccCCCcceEEEEE
Q 019482          150 EPKAHKSVLDMDFSLDSEFL-ATTSTDGSARIWKTEDGVAWTFLTRN----------SDEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l-~~~~~d~~v~iwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      ...+...+.+..|+|||++| ++++.++++++||..+++++..+..+          .......+.++|++..+    ++
T Consensus       104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~----~v  179 (432)
T d1qksa2         104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF----IV  179 (432)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE----EE
T ss_pred             CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEE----EE
Confidence            22344466777889999986 67788999999999999988776532          23345678899998863    46


Q ss_pred             ecCCcceEEEEECCCCcEEeeee-ccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEee
Q 019482          219 QRGDKALLAVYDISTWNKIGHKR-LLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINH  280 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~  280 (340)
                      +...++.|.+||..+++...... .....+..++|+|+|+++++++. ++.+.++|..+++...
T Consensus       180 s~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            66788999999999887554333 33456789999999998887765 4578888888766543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=8.9e-22  Score=167.59  Aligned_cols=238  Identities=8%  Similarity=-0.007  Sum_probs=168.6

Q ss_pred             EcCCCC--eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceee
Q 019482           71 VNPSGD--DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        71 ~~~~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  148 (340)
                      ++.+.+  ++++.+.||.|+|||+.+++....+..        ...+..++|+|||++|++++.|++|++||+.+++...
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~--------g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT--------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEEC--------CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeC--------CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            444433  557788899999999999988776642        2468999999999999999999999999999887432


Q ss_pred             c-----cccCccceeEEEecCCCCeEEEe-eCCCeEEEEEccCCeeEEEeecCC----------CCceeeEEEccCCCcc
Q 019482          149 D-----EPKAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNS----------DEKIELCRFSKDGTKP  212 (340)
Q Consensus       149 ~-----~~~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~  212 (340)
                      .     ..++...+.+++|+|||++++++ ..++.+++||..+++++..+..+.          ......+.+++++...
T Consensus        98 ~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~  177 (426)
T d1hzua2          98 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  177 (426)
T ss_dssp             EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEE
Confidence            2     22344567788899999987554 578999999999988877665322          2233455666666542


Q ss_pred             eEEEEEecCCcceEEEEECCCCcEE-eeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEeeccc-------
Q 019482          213 FLFCTVQRGDKALLAVYDISTWNKI-GHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSK-------  283 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-------  283 (340)
                          .......+.+.+++....... .....+...+..+.|+|++++++++.. +..+.+++..+++......       
T Consensus       178 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (426)
T d1hzua2         178 ----IVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP  253 (426)
T ss_dssp             ----EEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCC
T ss_pred             ----EEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccc
Confidence                334445566767766655432 223455667889999999998887754 4567777776654332110       


Q ss_pred             ----------------------------------------------ccccccceeeEEEecCCeEEEE-------EecCC
Q 019482          284 ----------------------------------------------RLHLGTSIALVEFCPTQRVVLT-------ASKEW  310 (340)
Q Consensus       284 ----------------------------------------------~~~~~~~i~~~~~~~~~~~l~~-------~~~dg  310 (340)
                                                                    .+| ...+..++|+||+++|++       ++.|+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~-~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~  332 (426)
T d1hzua2         254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTFNPDARISQ  332 (426)
T ss_dssp             SCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS-SSCCCCEECCTTCSEEEECCTTCSSHHHHT
T ss_pred             cceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC-CCceeEEEcCCCCceEEEeecCCCCcccCC
Confidence                                                          122 346889999999999994       56689


Q ss_pred             cEEEEEecCCC
Q 019482          311 GAMITKLTVPA  321 (340)
Q Consensus       311 ~i~iw~~~~~~  321 (340)
                      +|+||++....
T Consensus       333 tv~vwd~~t~~  343 (426)
T d1hzua2         333 SVAVFDLKNLD  343 (426)
T ss_dssp             CEEEEETTCTT
T ss_pred             EEEEEECCCCC
Confidence            99999987554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.3e-19  Score=148.69  Aligned_cols=244  Identities=15%  Similarity=0.082  Sum_probs=170.5

Q ss_pred             ceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-----CCeeEEEEcCCCCeEE
Q 019482            5 GTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-----GDPMTIAVNPSGDDFV   79 (340)
Q Consensus         5 ~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~   79 (340)
                      ..+.+++|+|+..  .+++++.      .++.|.+|++.        +......+..+.     ..+..++|+|++++++
T Consensus        34 ~~~~~i~~spDg~--~l~v~~~------~~~~v~v~D~~--------t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~   97 (337)
T d1pbyb_          34 PTPMVPMVAPGGR--IAYATVN------KSESLVKIDLV--------TGETLGRIDLSTPEERVKSLFGAALSPDGKTLA   97 (337)
T ss_dssp             TCCCCEEECTTSS--EEEEEET------TTTEEEEEETT--------TCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred             CCccEEEECCCCC--EEEEEEC------CCCeEEEEECC--------CCcEEEEEecCCCcccccceeeEEEcCCCcEEE
Confidence            4467899999432  3445443      45679999886        222333333332     3466899999999998


Q ss_pred             EEec------------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee
Q 019482           80 CSTT------------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII  147 (340)
Q Consensus        80 ~~~~------------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  147 (340)
                      ++..            +..+.+||..+.+....+.        ....+.+++|+|+|+++++++.  .+.+||..+++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~  167 (337)
T d1pbyb_          98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLV  167 (337)
T ss_dssp             EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--------CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEE
T ss_pred             EeecCCcceeeeccccccceeeccccCCeEEEecc--------ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEE
Confidence            7763            5678889988877655543        3356778999999999998864  4788999887766


Q ss_pred             eccccCccceeEEEecCCC------------------------CeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeE
Q 019482          148 LDEPKAHKSVLDMDFSLDS------------------------EFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELC  203 (340)
Q Consensus       148 ~~~~~~~~~i~~~~~~~~~------------------------~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~  203 (340)
                      .....+.. .....+.|++                        .....+..++.+.+|+..+++........+...+..+
T Consensus       168 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (337)
T d1pbyb_         168 EDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST  246 (337)
T ss_dssp             EEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE
T ss_pred             EEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEE
Confidence            54432211 1111122211                        1122223355799999998887665554555678889


Q ss_pred             EEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          204 RFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      .++|++..     +..  .++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|+.|++||..+++.+..+.
T Consensus       247 ~~~~~~~~-----~~~--~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         247 AVNPAKTR-----AFG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EECTTSSE-----EEE--EESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             EecccceE-----EEE--ccccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            99999985     222  26889999999999887765 45678999999999999999999999999999998887664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=2.2e-19  Score=148.70  Aligned_cols=288  Identities=10%  Similarity=-0.025  Sum_probs=183.3

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe---
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST---   82 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~---   82 (340)
                      |+.-.+.+|+..  .+.+.....  ....+.+.+|+.+        +.....++..+.  ...++|+|||++|++++   
T Consensus         3 p~~~~a~spdg~--~~~v~~~~~--~~~~~~v~v~D~~--------tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~   68 (355)
T d2bbkh_           3 PRILEAPAPDAR--RVYVNDPAH--FAAVTQQFVIDGE--------AGRVIGMIDGGF--LPNPVVADDGSFIAHASTVF   68 (355)
T ss_dssp             CCBCCCCCCCTT--EEEEEECGG--GCSSEEEEEEETT--------TTEEEEEEEECS--SCEEEECTTSSCEEEEEEEE
T ss_pred             CcEeEeeCCCCC--EEEEEeccc--CCCcCeEEEEECC--------CCcEEEEEECCC--CCceEEcCCCCEEEEEeCCC
Confidence            444455667543  333322211  1234556666654        333444555554  34799999999887653   


Q ss_pred             -------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc--CCCcEEEEeCCCCceeeccccC
Q 019482           83 -------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG--VDGHLRIMHWPSLRIILDEPKA  153 (340)
Q Consensus        83 -------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~  153 (340)
                             .++.|++||..+++....+................++|+|++++++.+.  .+..+.+|+..+++.+..+..+
T Consensus        69 ~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (355)
T d2bbkh_          69 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP  148 (355)
T ss_dssp             EETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred             ccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecC
Confidence                   4788999999998876655433322223334456789999999887664  4678999999998877655433


Q ss_pred             cc-------ceeEEEecCCCCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcce
Q 019482          154 HK-------SVLDMDFSLDSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKAL  225 (340)
Q Consensus       154 ~~-------~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~  225 (340)
                      ..       ....+.++++++.++... .++.+.+++......      .....+....+.+++..     ++..+.++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~~~~~  217 (355)
T d2bbkh_         149 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP------EDEFLINHPAYSQKAGR-----LVWPTYTGK  217 (355)
T ss_dssp             SEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC------TTSCBCSCCEEETTTTE-----EEEEBTTSE
T ss_pred             CcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc------eecceeeeccccCCCCe-----EEEecCCCe
Confidence            22       123345555555444332 333444444332221      12233556677777776     567788999


Q ss_pred             EEEEECCCCcEEe--eeecc----------CCCeeEEEECCCCCEEEEeeCC----------CcEEEEeccCceEeeccc
Q 019482          226 LAVYDISTWNKIG--HKRLL----------RKPASVLSISLDGKYLAMGSKD----------GDICVVDVKKMEINHWSK  283 (340)
Q Consensus       226 i~i~d~~~~~~~~--~~~~~----------~~~i~~~~~s~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~  283 (340)
                      +++|++..++...  ....+          ......++++|++..++....+          +.|.+||..+++.+..+.
T Consensus       218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~  297 (355)
T d2bbkh_         218 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE  297 (355)
T ss_dssp             EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred             EEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec
Confidence            9999998876421  11111          1233458899999988876543          369999999998887664


Q ss_pred             ccccccceeeEEEecCCe--EEEEEecCCcEEEEEecCCC
Q 019482          284 RLHLGTSIALVEFCPTQR--VVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~  321 (340)
                      .   +..+.+++|+|||+  ++++++.|+.|+|||+...+
T Consensus       298 ~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         298 M---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             E---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             C---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            3   34689999999997  45677889999999997654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.84  E-value=4.9e-19  Score=145.69  Aligned_cols=250  Identities=15%  Similarity=0.062  Sum_probs=168.6

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecC------CCCeeEEEEcCCC
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES------EGDPMTIAVNPSG   75 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~   75 (340)
                      +++..+.+++|+|+..  .+++.+.      .++.|.+|++.        +......+...      ...+..++|+|||
T Consensus        37 ~~~~~p~~l~~spDG~--~l~v~~~------~~~~v~~~d~~--------t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG  100 (346)
T d1jmxb_          37 PDKFGPGTAMMAPDNR--TAYVLNN------HYGDIYGIDLD--------TCKNTFHANLSSVPGEVGRSMYSFAISPDG  100 (346)
T ss_dssp             SSCCSSCEEEECTTSS--EEEEEET------TTTEEEEEETT--------TTEEEEEEESCCSTTEEEECSSCEEECTTS
T ss_pred             CCCCCcceEEECCCCC--EEEEEEC------CCCcEEEEeCc--------cCeeeeeecccccccccCCceEEEEEecCC
Confidence            3345567999999543  3445443      45669999876        22222222221      1246789999999


Q ss_pred             CeEEEEe------------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           76 DDFVCST------------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        76 ~~l~~~~------------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      +++++++            .+..+.+|+..+++....+....     ....+..+.+++++..++++   +.+.+|++.+
T Consensus       101 ~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  172 (346)
T d1jmxb_         101 KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-----MPRQVYLMRAADDGSLYVAG---PDIYKMDVKT  172 (346)
T ss_dssp             SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-----CCSSCCCEEECTTSCEEEES---SSEEEECTTT
T ss_pred             CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee-----ccCceEEEEecCCCEEEEeC---CcceEEEccC
Confidence            9988765            35678888887765433322211     22345566777777666553   4589999988


Q ss_pred             CceeeccccCccceeEEEecCCCCe--------------------------EEEeeCCCeEEEEEccCCeeEEEeecCCC
Q 019482          144 LRIILDEPKAHKSVLDMDFSLDSEF--------------------------LATTSTDGSARIWKTEDGVAWTFLTRNSD  197 (340)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~--------------------------l~~~~~d~~v~iwd~~~~~~~~~~~~~~~  197 (340)
                      ++....+..+ .....+.++|++..                          ++++..+..+.+||..++.........+.
T Consensus       173 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (346)
T d1jmxb_         173 GKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT  251 (346)
T ss_dssp             CCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred             CCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeeccc
Confidence            8776654332 23334444444433                          23334456688888888877666555556


Q ss_pred             CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCce
Q 019482          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKME  277 (340)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  277 (340)
                      ..+..+.+++++..     ++. ..++.+.+||..+++.+..+. ....+.+++|+|||++|++++.|+.|++||.++++
T Consensus       252 ~~~~~~~~~~~~~~-----~~~-~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         252 ELYFTGLRSPKDPN-----QIY-GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             SCEEEEEECSSCTT-----EEE-EEESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             ceeEEEEEeCCCCE-----EEE-ecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            67888999999886     232 235679999999999877665 34578999999999999999999999999999999


Q ss_pred             Eeeccc
Q 019482          278 INHWSK  283 (340)
Q Consensus       278 ~~~~~~  283 (340)
                      .+..+.
T Consensus       325 ~i~~i~  330 (346)
T d1jmxb_         325 KVKNIK  330 (346)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.3e-17  Score=134.04  Aligned_cols=256  Identities=12%  Similarity=0.114  Sum_probs=168.6

Q ss_pred             CCCceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEE
Q 019482            2 EGGGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCS   81 (340)
Q Consensus         2 ~~~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~   81 (340)
                      +.++.+.+++|+|+..  .|++.+.      .++.|.+|+++.......     ......+...+..++|+|||++|+++
T Consensus        34 ~~~~~v~~la~spDG~--~L~v~~~------~d~~i~~~~i~~~~~~~~-----~~~~~~~~~~p~~l~~spDg~~l~v~  100 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKR--YLYVGVR------PEFRVLAYRIAPDDGALT-----FAAESALPGSLTHISTDHQGQFVFVG  100 (333)
T ss_dssp             ECSSCCCCEEECTTSS--EEEEEET------TTTEEEEEEECTTTCCEE-----EEEEEECSSCCSEEEECTTSSEEEEE
T ss_pred             cCCCCEeEEEEeCCCC--EEEEEEC------CCCeEEEEEEeCCCCcEE-----EeeecccCCCceEEEEcCCCCEEeec
Confidence            3467789999999533  2334332      567799999986543321     11122345668899999999999988


Q ss_pred             ec-CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceeec------cccC
Q 019482           82 TT-NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIILD------EPKA  153 (340)
Q Consensus        82 ~~-d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~------~~~~  153 (340)
                      +. ++.+.+|+.............     .+...+.++.++|++++++.++. +..|.+|+.........      ....
T Consensus       101 ~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  175 (333)
T d1ri6a_         101 SYNAGNVSVTRLEDGLPVGVVDVV-----EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE  175 (333)
T ss_dssp             ETTTTEEEEEEEETTEEEEEEEEE-----CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred             ccCCCceeeeccccccceeccccc-----CCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeec
Confidence            75 568999998876654433221     24466788999999998877764 45799999876443221      1122


Q ss_pred             ccceeEEEecCCCCeEEEee-CCCeEEEEEccCCe----eEEEeec-----CCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          154 HKSVLDMDFSLDSEFLATTS-TDGSARIWKTEDGV----AWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       154 ~~~i~~~~~~~~~~~l~~~~-~d~~v~iwd~~~~~----~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      ......++|++++..++... ..+...+|+.....    .......     ........++++++++++    .+....+
T Consensus       176 g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~----~~~~~~~  251 (333)
T d1ri6a_         176 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL----YACDRTA  251 (333)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE----EEEETTT
T ss_pred             CCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce----eeecccC
Confidence            23567899999988876554 55678888765322    1112211     112346678899999863    4566778


Q ss_pred             ceEEEEECCCCcEEeee---eccCCCeeEEEECCCCCEEEEeeC-CCcEEEEec--cCceEe
Q 019482          224 ALLAVYDISTWNKIGHK---RLLRKPASVLSISLDGKYLAMGSK-DGDICVVDV--KKMEIN  279 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~--~~~~~~  279 (340)
                      +.+.+|++.........   ......+..++|+|||++|++++. ++.|++|++  +++++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         252 SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            89999998765433222   223456778999999999887754 688999954  566543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.5e-17  Score=138.34  Aligned_cols=290  Identities=7%  Similarity=-0.126  Sum_probs=179.9

Q ss_pred             CceeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEe-
Q 019482            4 GGTVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCST-   82 (340)
Q Consensus         4 ~~~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-   82 (340)
                      .++...++..++.....+.+...      .++...+|-++....      .....+.++...  .++|+|||+.|++.+ 
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~------~~g~~~~~~~d~~~~------~~~~~~~~~~~~--~~a~spDg~~i~~~~~   84 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAY------FAGTTENWVSCAGCG------VTLGHSLGAFLS--LAVAGHSGSDFALAST   84 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTT------TCSSEEEEEEETTTT------EEEEEEEECTTC--EEEECTTSSCEEEEEE
T ss_pred             CCCccccccCCCCcceeEEeecc------CCCcceEEEEeCCCC------cEEEEEeCCCCC--cceECCCCCEEEEEcc
Confidence            34444555555443222333222      344577777775543      333445555443  689999999888754 


Q ss_pred             ---------cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCceeecccc
Q 019482           83 ---------TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLRIILDEPK  152 (340)
Q Consensus        83 ---------~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~  152 (340)
                               .|+.|++||..+.+....+................++|+|||++|+++. .++.+.+||+.+++.......
T Consensus        85 ~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             cCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence                     3667999999998876665432222222223345689999999998775 578999999999887766544


Q ss_pred             CccceeEEEecC-CCCeEEEeeCCCeEEEEEccCCeeEEEee-----cCCCCceeeEEEccCCCcceEEEEEecCCcceE
Q 019482          153 AHKSVLDMDFSL-DSEFLATTSTDGSARIWKTEDGVAWTFLT-----RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALL  226 (340)
Q Consensus       153 ~~~~i~~~~~~~-~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i  226 (340)
                      +...    .+.| ....++..+.||++.+++...........     ......+....+.+++..     +.  ...+.+
T Consensus       165 ~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~~--~~~~~v  233 (368)
T d1mdah_         165 ASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML-----VW--AVASSI  233 (368)
T ss_dssp             SSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE-----EE--CBSSCC
T ss_pred             cCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE-----EE--ecCCCE
Confidence            3322    1222 23456666777888888776544322221     112234456777777653     22  234556


Q ss_pred             EEEECCCCcEEeeee--c----------cCCCeeEEEECCCCCEEEEeeCC---------CcEEEEeccCceEeeccccc
Q 019482          227 AVYDISTWNKIGHKR--L----------LRKPASVLSISLDGKYLAMGSKD---------GDICVVDVKKMEINHWSKRL  285 (340)
Q Consensus       227 ~i~d~~~~~~~~~~~--~----------~~~~i~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~  285 (340)
                      .+++...........  .          .......++++|++..+++...+         ..|.+||..+++.+..+.. 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-  312 (368)
T d1mdah_         234 LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-  312 (368)
T ss_dssp             EEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-
T ss_pred             EEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-
Confidence            666665544321111  0          01123457889998887765332         3599999999998877643 


Q ss_pred             ccccceeeEEEecCCe--EEEEEecCCcEEEEEecCCC
Q 019482          286 HLGTSIALVEFCPTQR--VVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~  321 (340)
                        +..+.+++|+|||+  +++++..|+.|++||....+
T Consensus       313 --~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         313 --GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             --EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             --CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence              35789999999996  35677789999999987654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=1.9e-15  Score=125.52  Aligned_cols=265  Identities=10%  Similarity=-0.004  Sum_probs=172.3

Q ss_pred             EeeeeecCCCccEEEEcCCCC----cccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCC-------eeEEEEcCCCCe
Q 019482            9 CGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGD-------PMTIAVNPSGDD   77 (340)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~~~~----~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~   77 (340)
                      .++|+|+.   ..++......    .+..++.+.+|+..        .......+..+...       ...+.|+++++.
T Consensus        70 ~~a~SpDG---~~l~va~~~~~~~~~~~~~~~v~v~D~~--------t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  138 (373)
T d2madh_          70 NPVAAHSG---SEFALASTSFSRIAKGKRTDYVEVFDPV--------TFLPIADIELPDAPRFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             cEEEcCCC---CEEEEEeecCCcccccccceEEEEEECC--------CCcEEEEEecCCcceeEeccCCCcEEEEeCCCc
Confidence            68999954   3444433221    12356789999876        22222333333322       356888999987


Q ss_pred             EEEEe--cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeE-EEccCCCcEEEEeCCCCceeeccccCc
Q 019482           78 FVCST--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRF-AAGGVDGHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        78 l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~~d~~~~~~~~~~~~~~  154 (340)
                      ++...  .++.+.+|+....+...           +.....++.++|+++.+ ++.+.|+.+.+|+...++.......+.
T Consensus       139 ~~v~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~  207 (373)
T d2madh_         139 LLFFQFAAGPAVGLVVQGGSSDDQ-----------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAM  207 (373)
T ss_pred             EEEEEEcCCCceEEeeccCCeEEE-----------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeec
Confidence            66554  34678888887665432           22345788999998754 678889999999998876654433221


Q ss_pred             ------cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec--C---------CCCceeeEEEccCCCcceEE--
Q 019482          155 ------KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--N---------SDEKIELCRFSKDGTKPFLF--  215 (340)
Q Consensus       155 ------~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~---------~~~~v~~~~~~~~~~~~~~~--  215 (340)
                            .....+.+.+++. ++..+.++.+.+|+............  .         .......+++++++..++..  
T Consensus       208 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  286 (373)
T d2madh_         208 LTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS  286 (373)
T ss_pred             cccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecC
Confidence                  1234455666654 44556789999999887654322110  0         11224456777777754321  


Q ss_pred             ---EEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCE--EEEeeCCCcEEEEeccCceEeecccccccccc
Q 019482          216 ---CTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY--LAMGSKDGDICVVDVKKMEINHWSKRLHLGTS  290 (340)
Q Consensus       216 ---~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  290 (340)
                         .++....++.+.+||..+++.+..+. +...+..++|+|||+.  +++++.|+.|++||+.+++.+..+.. + +..
T Consensus       287 ~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~-~-g~~  363 (373)
T d2madh_         287 EQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE-L-GSG  363 (373)
T ss_pred             CCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC-C-CCC
Confidence               13455667889999999999887654 4567889999999984  46788999999999999999887742 2 345


Q ss_pred             eeeEEEecC
Q 019482          291 IALVEFCPT  299 (340)
Q Consensus       291 i~~~~~~~~  299 (340)
                      ...+++.++
T Consensus       364 P~~l~~~~~  372 (373)
T d2madh_         364 PQVLSVMNE  372 (373)
T ss_pred             CcEEEEecC
Confidence            666666543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=7.4e-16  Score=127.12  Aligned_cols=260  Identities=13%  Similarity=0.121  Sum_probs=160.0

Q ss_pred             EEeeeeecCCCccEEEEcCC---CCcccCCCceEEEEeCCCCCCcccCCeeeEEEecC-------CCCeeEEEEcCCCCe
Q 019482            8 TCGSWIKRPENVNLVVLGKS---SRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDES-------EGDPMTIAVNPSGDD   77 (340)
Q Consensus         8 ~~~~w~~~~~~~~~~~~g~~---~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~   77 (340)
                      ..++|+|+..  .+.+....   ...+..++.|.+|+...        ......+..+       ......++|+|+|++
T Consensus        50 ~~~a~SpDg~--~l~v~~~~~~~~~~g~~d~~v~v~D~~t--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  119 (355)
T d2bbkh_          50 PNPVVADDGS--FIAHASTVFSRIARGERTDYVEVFDPVT--------LLPTADIELPDAPRFLVGTYPWMTSLTPDGKT  119 (355)
T ss_dssp             CEEEECTTSS--CEEEEEEEEEETTEEEEEEEEEEECTTT--------CCEEEEEEETTCCCCCBSCCGGGEEECTTSSE
T ss_pred             CceEEcCCCC--EEEEEeCCCccccccCCCCEEEEEECCC--------CCEEEEEecCCcceeecCCCCceEEEecCCCe
Confidence            3679999553  23332211   01122456788887652        2222222222       223567899999998


Q ss_pred             EEEEe--cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceeeccccCc
Q 019482           78 FVCST--TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAH  154 (340)
Q Consensus        78 l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~  154 (340)
                      ++.+.  .+..+.+|+..+++....+................+.+++|++.++.. ..++.+.+++......     .+.
T Consensus       120 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~  194 (355)
T d2bbkh_         120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDE  194 (355)
T ss_dssp             EEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTS
T ss_pred             eEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eec
Confidence            87765  456789999998876654432110000011233456677777655543 3344555555443321     222


Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEE--eecCC---------CCceeeEEEccCCCcceEEEEE-----
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTF--LTRNS---------DEKIELCRFSKDGTKPFLFCTV-----  218 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~--~~~~~---------~~~v~~~~~~~~~~~~~~~~~~-----  218 (340)
                      ..+....+.+++..++.++.++.+++|++..++....  ...+.         ......+++++++..++.....     
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~  274 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR  274 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred             ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee
Confidence            3455677888888899999999999999987654221  11000         1123568899999874432111     


Q ss_pred             ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCC--EEEEeeCCCcEEEEeccCceEeeccc
Q 019482          219 QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGK--YLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       219 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                      .......|.+||..+++.+..+... ..+.+++|+|||+  ++++++.|+.|++||+++++.+..+.
T Consensus       275 ~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         275 HKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            1123468999999999988766543 4578999999997  45567779999999999999988764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.69  E-value=3.6e-15  Score=127.97  Aligned_cols=147  Identities=14%  Similarity=0.161  Sum_probs=100.2

Q ss_pred             eeEEeeeeecCCCccEEEEcCCCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEec--
Q 019482            6 TVTCGSWIKRPENVNLVVLGKSSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTT--   83 (340)
Q Consensus         6 ~v~~~~w~~~~~~~~~~~~g~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--   83 (340)
                      +-..+.|.++   ..++..        .++.+.+|+.........   .....+..|...|.++.|||||++|+.++.  
T Consensus        18 ~~~~~~W~~d---~~~~~~--------~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          18 KLYSLRWISD---HEYLYK--------QENNILVFNAEYGNSSVF---LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCCCCEECSS---SEEEEE--------SSSCEEEEETTTCCEEEE---ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             cccCCEeCCC---CEEEEE--------cCCcEEEEECCCCCEEEE---EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            3457889984   345542        244588887763321110   111234456678999999999999998753  


Q ss_pred             -------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCc--
Q 019482           84 -------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAH--  154 (340)
Q Consensus        84 -------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--  154 (340)
                             ++.+.+||+.+++... +.       .+...+..+.|||||++||.. .++.+++|+..+++.......+.  
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~~-l~-------~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~  154 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLIT-EE-------RIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED  154 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECC-SS-------CCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT
T ss_pred             ceeeeccCceEEEEECCCCcccc-cc-------cCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCC
Confidence                   4678899999876432 21       256788999999999999986 46789999998887654332211  


Q ss_pred             ----------------cceeEEEecCCCCeEEEeeCC
Q 019482          155 ----------------KSVLDMDFSLDSEFLATTSTD  175 (340)
Q Consensus       155 ----------------~~i~~~~~~~~~~~l~~~~~d  175 (340)
                                      +....+.|+|||+.|+....|
T Consensus       155 ~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         155 IIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             TEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             cccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence                            224567899999999987644

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.63  E-value=4.1e-13  Score=110.80  Aligned_cols=274  Identities=11%  Similarity=0.073  Sum_probs=162.5

Q ss_pred             CCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCC
Q 019482           34 PSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAG  113 (340)
Q Consensus        34 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  113 (340)
                      ++.|..+.|+.+...+.  ..... .......+..|+|+|++++|+++..+ .+..|.+.............     ...
T Consensus        13 ~~~i~~~~fd~~~~~l~--~~~~~-~~~~~~~~s~la~s~d~~~ly~~~~~-~~~~~~i~~~~~~~~~~~~~-----~~~   83 (365)
T d1jofa_          13 PGAIFTVQFDDEKLTCK--LIKRT-EIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-----IGG   83 (365)
T ss_dssp             SCEEEEEEEETTTTEEE--EEEEE-ECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-----CCS
T ss_pred             CCCEEEEEEcCCCCeEE--Eeeee-eccCCCCCCEEEEcCCCCEEEEEeCC-cEEEEEEeCCCCeEEEeeec-----CCC
Confidence            44588899987765542  11111 22345567789999999999887664 48888876543222222111     123


Q ss_pred             CeEEEEEecCCCe--EEEcc-CCCcEEEEeCCCC-------------ce---eec-cccCccceeEEEecCCCCeEEEee
Q 019482          114 PQKCLSFSVDGSR--FAAGG-VDGHLRIMHWPSL-------------RI---ILD-EPKAHKSVLDMDFSLDSEFLATTS  173 (340)
Q Consensus       114 ~v~~~~~~~~~~~--l~~~~-~dg~i~~~d~~~~-------------~~---~~~-~~~~~~~i~~~~~~~~~~~l~~~~  173 (340)
                      ....+.++++++.  ++++. ..+.|..+.+...             ..   ... .......+.++.|+|||+++++++
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            4456778888874  33332 2345554433211             00   000 111122478999999999888876


Q ss_pred             C-CCeEEEEEccCCe-eE--EEee-cCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee--ec----
Q 019482          174 T-DGSARIWKTEDGV-AW--TFLT-RNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RL----  242 (340)
Q Consensus       174 ~-d~~v~iwd~~~~~-~~--~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~----  242 (340)
                      . ...|.+|+..... ..  .... .........++|+|+++++    .++...+++|.+|++...+.....  ..    
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~----yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~  239 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYL----YALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEE----EEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceE----EEeccCCCEEEEEEecCCCceEEEEeeeeccc
Confidence            4 4578888765432 21  1111 1223468899999999974    355677899999998765422111  10    


Q ss_pred             -------------cCCCeeEEEECCCCCEEEEeeC------CCcEEEEeccCceEee-c---ccccccccceeeEEEec-
Q 019482          243 -------------LRKPASVLSISLDGKYLAMGSK------DGDICVVDVKKMEINH-W---SKRLHLGTSIALVEFCP-  298 (340)
Q Consensus       243 -------------~~~~i~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~-~---~~~~~~~~~i~~~~~~~-  298 (340)
                                   .......+.++|||++|+++..      .+.|..|++.....+. .   ......+.....++++| 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~  319 (365)
T d1jofa_         240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence                         0112457899999999988743      2237777765422111 1   11111134568899998 


Q ss_pred             CCeEEEEE-ecCCcEEEEEecCC
Q 019482          299 TQRVVLTA-SKEWGAMITKLTVP  320 (340)
Q Consensus       299 ~~~~l~~~-~~dg~i~iw~~~~~  320 (340)
                      +|++|+.+ ..++.|.+|+++..
T Consensus       320 ~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         320 SDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCEEEEEeCCCCeEEEEEEeCC
Confidence            78877665 56799999998654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=8e-14  Score=115.52  Aligned_cols=235  Identities=9%  Similarity=-0.022  Sum_probs=155.8

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCe--EEEccCCC----
Q 019482           62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSR--FAAGGVDG----  134 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg----  134 (340)
                      |.-......++|||++|++.. .+..|.++|+++.+....+..      +....+..++|+|+++.  ++..+++.    
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~i------P~g~gphgi~~spdg~t~YV~~~~~~~v~~~  143 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHI------PNVQAIHGLRLQKVPKTNYVFCNAEFVIPQP  143 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC------TTCCCEEEEEECCSSBCCEEEEEECSCEESS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEec------CCCCCccceEEeccCCEEEEEeccCCccccc
Confidence            444455666789999886654 567899999999876554321      24567899999999984  44433321    


Q ss_pred             -------------cEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC--------------------------
Q 019482          135 -------------HLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD--------------------------  175 (340)
Q Consensus       135 -------------~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------------  175 (340)
                                   .+..+|..+.+...+.... .....++++|+|+++++++.+                          
T Consensus       144 ~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         144 NDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             CSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             CcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence                         2355777777766555433 356789999999988877643                          


Q ss_pred             ---------------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE---
Q 019482          176 ---------------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI---  237 (340)
Q Consensus       176 ---------------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---  237 (340)
                                     +.+.+++....+.+..+..+  .....+.++|||+++    ++++..++++.+||+.+.+..   
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg--ksPhGv~vSPDGkyl----~~~~~~~~tvsv~d~~k~~~~~~~  296 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP--KNPHGLNTSPDGKYF----IANGKLSPTVSVIAIDKLDDLFED  296 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB--SSCCCEEECTTSCEE----EEECTTSSBEEEEEGGGHHHHTTT
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC--CCccCceECCCCCEE----EEeCCcCCcEEEEEeehhhhHhhc
Confidence                           22333333333444444432  346889999999973    577889999999998753210   


Q ss_pred             -----eeeec---cCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCc----------eEeec----ccccccccceeeEE
Q 019482          238 -----GHKRL---LRKPASVLSISLDGKYLAMGSKDGDICVVDVKKM----------EINHW----SKRLHLGTSIALVE  295 (340)
Q Consensus       238 -----~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~----~~~~~~~~~i~~~~  295 (340)
                           ..+..   ..-.....+|+++|..+.+...|..|..|++...          .....    ...+| ...+.+.+
T Consensus       297 ~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH-~~~~~~~t  375 (441)
T d1qnia2         297 KIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH-NHASLTES  375 (441)
T ss_dssp             SSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTS
T ss_pred             cCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC-Cccccccc
Confidence                 11111   1112344689999988888899999999997521          11111    12355 46778889


Q ss_pred             EecCCeEEEEE---ecCC
Q 019482          296 FCPTQRVVLTA---SKEW  310 (340)
Q Consensus       296 ~~~~~~~l~~~---~~dg  310 (340)
                      ++|||++|+++   |.|.
T Consensus       376 ~~pdGk~l~s~~k~s~dr  393 (441)
T d1qnia2         376 RDADGKWLVVLSKFSKDR  393 (441)
T ss_dssp             TTCCCCEEEEEESCCGGG
T ss_pred             cCCCCcEEEecCcccccc
Confidence            99999999999   5553

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=1.4e-13  Score=114.06  Aligned_cols=238  Identities=10%  Similarity=0.001  Sum_probs=156.9

Q ss_pred             EEEEecCCCEEEEEecCceeeeeecccc-----------------------CCCCCCCCCeEEEEEecCCCeEEEc-cCC
Q 019482           78 FVCSTTNGGCKLFEVYGGATDINLLAKK-----------------------MPPLQDAGPQKCLSFSVDGSRFAAG-GVD  133 (340)
Q Consensus        78 l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----------------------~~~~~~~~~v~~~~~~~~~~~l~~~-~~d  133 (340)
                      +++++.+|+|++|++.+.+....+..-.                       ..-..|........++|||++|++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            5677889999999998887665542100                       0001133445556678999988665 467


Q ss_pred             CcEEEEeCCCCceeeccc-cCccceeEEEecCCCCe--EEEeeCCC-----------------eEEEEEccCCeeEEEee
Q 019482          134 GHLRIMHWPSLRIILDEP-KAHKSVLDMDFSLDSEF--LATTSTDG-----------------SARIWKTEDGVAWTFLT  193 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~--l~~~~~d~-----------------~v~iwd~~~~~~~~~~~  193 (340)
                      ..|.++|+.+++....+. .....+..++|+|+++.  ++..+.+.                 .+..+|..+.+...++.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            889999999998766543 23457899999999984  44333221                 23557888887777765


Q ss_pred             cCCCCceeeEEEccCCCcceEEEE------------------------------------EecCCcceEEEEECCCCcEE
Q 019482          194 RNSDEKIELCRFSKDGTKPFLFCT------------------------------------VQRGDKALLAVYDISTWNKI  237 (340)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~~~~~~~------------------------------------~~~~~d~~i~i~d~~~~~~~  237 (340)
                      ..  +.+..+.|+|+|++.+..+.                                    ...+.++.+.+++....+.+
T Consensus       174 v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~  251 (441)
T d1qnia2         174 VD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT  251 (441)
T ss_dssp             ES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred             cC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence            43  35788999999997543221                                    11122345555555555555


Q ss_pred             eeeeccCCCeeEEEECCCCCEEEE-eeCCCcEEEEeccCceEeecc-------cccc--cccceeeEEEecCCeEEEEEe
Q 019482          238 GHKRLLRKPASVLSISLDGKYLAM-GSKDGDICVVDVKKMEINHWS-------KRLH--LGTSIALVEFCPTQRVVLTAS  307 (340)
Q Consensus       238 ~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~-------~~~~--~~~~i~~~~~~~~~~~l~~~~  307 (340)
                      ..+..... ...+.++|||+++++ +..+++|.+||+.+.+....-       ..++  .+-.....+|+++|+.+.+..
T Consensus       252 ~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~  330 (441)
T d1qnia2         252 RYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF  330 (441)
T ss_dssp             EEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET
T ss_pred             EEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccc
Confidence            55555443 577999999998765 567899999998764321000       0000  011234568999999999999


Q ss_pred             cCCcEEEEEec
Q 019482          308 KEWGAMITKLT  318 (340)
Q Consensus       308 ~dg~i~iw~~~  318 (340)
                      .|..|..|++.
T Consensus       331 ~ds~v~kw~~~  341 (441)
T d1qnia2         331 IDSQVCKWNIA  341 (441)
T ss_dssp             TTTEEEEEEHH
T ss_pred             ccceEEEeccc
Confidence            99999999986

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=1.6e-13  Score=113.65  Aligned_cols=251  Identities=9%  Similarity=-0.049  Sum_probs=151.6

Q ss_pred             EeeeeecCCCccEEEEcC----CCCcccCCCceEEEEeCCCCCCcccCCeeeEEEecCC-------CCeeEEEEcCCCCe
Q 019482            9 CGSWIKRPENVNLVVLGK----SSRASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESE-------GDPMTIAVNPSGDD   77 (340)
Q Consensus         9 ~~~w~~~~~~~~~~~~g~----~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~   77 (340)
                      .++|+|+..   .++..+    ....+..++.|.+|+..        +......+..+.       .....++|+|||++
T Consensus        69 ~~a~spDg~---~i~~~~~~~~~~~~g~~d~~v~v~D~~--------t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          69 LAVAGHSGS---DFALASTSFARSAKGKRTDYVEVFDPV--------TFLPIADIELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEEECTTSS---CEEEEEEEETTTTSSSEEEEEEEECTT--------TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             cceECCCCC---EEEEEcccCccccccccCCeEEEEECC--------CCcEeeeecCCccceecccCCccceEECCCCCE
Confidence            467888543   333222    11122346668888665        222222232222       22457999999999


Q ss_pred             EEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEec-CCCeEEEccCCCcEEEEeCCCCceeec------
Q 019482           78 FVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSV-DGSRFAAGGVDGHLRIMHWPSLRIILD------  149 (340)
Q Consensus        78 l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~------  149 (340)
                      |+++. .++.+.+||+.+.+..........       .    .+.| ....++..+.||.+.++++........      
T Consensus       138 l~va~~~~~~v~~~d~~~~~~~~~~~~~~~-------~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~  206 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGASDDQLTKSASC-------F----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEEEEEEECSSC-------C----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             EEEEeCCCCeEEEEECCCCcEeEEeeccCc-------c----eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence            98776 468999999999887665533211       1    1122 234556666777777777654432211      


Q ss_pred             cccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC-----------CCceeeEEEccCCCcceEEEEE
Q 019482          150 EPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----------DEKIELCRFSKDGTKPFLFCTV  218 (340)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~  218 (340)
                      ...+...+....+.+++..+.+.  .+.+++++...+..........           ......+++++++..++....-
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~  284 (368)
T d1mdah_         207 TGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE  284 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             ccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecC
Confidence            11222345567778787666544  4667777776554432221100           0123467889998874432110


Q ss_pred             ----ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCE--EEEeeCCCcEEEEeccCceEeecccc
Q 019482          219 ----QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKY--LAMGSKDGDICVVDVKKMEINHWSKR  284 (340)
Q Consensus       219 ----~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~  284 (340)
                          .......|.+||..+++.+..+.. ...+..++|+|||+.  ++++..++.|++||..+++.+..+..
T Consensus       285 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         285 HSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             CSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence                012235799999999998776654 346888999999973  45666789999999999999887754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.60  E-value=1.3e-13  Score=118.08  Aligned_cols=141  Identities=11%  Similarity=-0.007  Sum_probs=105.4

Q ss_pred             eEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC---------CCcEE
Q 019482           67 MTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV---------DGHLR  137 (340)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~  137 (340)
                      ..+.|.++++++..  .++.+.+||+.+++....+...  ....+...|.++.|||||++|+.++.         ++.+.
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~   95 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENS--TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTT--TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchh--hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence            35789999987763  4677999999998765433322  22235678999999999999998743         56789


Q ss_pred             EEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC-----------------CCce
Q 019482          138 IMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS-----------------DEKI  200 (340)
Q Consensus       138 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~-----------------~~~v  200 (340)
                      +||+.+++. ..+..+...+..+.|+|||+.+|... ++.+++|+..+++.........                 .+..
T Consensus        96 l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          96 IYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             EEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            999998774 45667777899999999999999965 7899999998887655433211                 1234


Q ss_pred             eeEEEccCCCcce
Q 019482          201 ELCRFSKDGTKPF  213 (340)
Q Consensus       201 ~~~~~~~~~~~~~  213 (340)
                      ..+.|||||+++.
T Consensus       174 ~~~~wSPDGk~ia  186 (470)
T d2bgra1         174 SALWWSPNGTFLA  186 (470)
T ss_dssp             BCEEECTTSSEEE
T ss_pred             cccEECCCCCccc
Confidence            5688999999743

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.1e-11  Score=96.02  Aligned_cols=220  Identities=18%  Similarity=0.156  Sum_probs=132.8

Q ss_pred             cCCCCeeEEEEcCCCCeEEEEecC-C--CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-CCc-
Q 019482           61 ESEGDPMTIAVNPSGDDFVCSTTN-G--GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGH-  135 (340)
Q Consensus        61 ~h~~~v~~~~~~~~~~~l~~~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~-  135 (340)
                      .+...+...+|||||+.||..... +  .+.+.+..........        .+.+......|+|+|+.++.... ++. 
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~spdg~~i~~~~~~~~~~  107 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--------SFPRHNGAPAFSPDGSKLAFALSKTGSL  107 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--------CCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe--------eeecccccceecCCCCeeeEeeecCCcc
Confidence            456778899999999999876544 3  3445555444332211        24567788999999998876543 222 


Q ss_pred             -EEEEeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCC--eEEEEEccCCeeEEEeecCCCCceeeEEEccCCCc
Q 019482          136 -LRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDG--SARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTK  211 (340)
Q Consensus       136 -i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (340)
                       +..+......... ............++++++.++ +...++  .+.+.++..+......  ..........|+|+++.
T Consensus       108 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~  184 (269)
T d2hqsa1         108 NLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT--WEGSQNQDADVSSDGKF  184 (269)
T ss_dssp             EEEEEETTTCCEEE-CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC--CSSSEEEEEEECTTSSE
T ss_pred             ceeeccccccccee-eeeccccccccccccccccceecccccCCceEeeeecccccceeee--cccccccccccccccce
Confidence             3333333333222 223333444556777666544 444455  4555565554433222  23456778899999997


Q ss_pred             ceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCC---CcEEEEeccCceEeecccccccc
Q 019482          212 PFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKD---GDICVVDVKKMEINHWSKRLHLG  288 (340)
Q Consensus       212 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~  288 (340)
                      ++.  .........+.+.|...+..  .............|||||+.|+..+..   ..|+++++..+...+...  . .
T Consensus       185 ~~~--~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~--~-~  257 (269)
T d2hqsa1         185 MVM--VSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA--T-D  257 (269)
T ss_dssp             EEE--EEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC--S-S
T ss_pred             eEE--EeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC--C-C
Confidence            422  22223344566666665543  333445566788999999999866543   468899998877655432  2 3


Q ss_pred             cceeeEEEec
Q 019482          289 TSIALVEFCP  298 (340)
Q Consensus       289 ~~i~~~~~~~  298 (340)
                      ..+...+|||
T Consensus       258 g~~~~p~WSP  267 (269)
T d2hqsa1         258 GQVKFPAWSP  267 (269)
T ss_dssp             SEEEEEEECC
T ss_pred             CcEEeEEeCC
Confidence            4678889998

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.50  E-value=1.9e-10  Score=92.44  Aligned_cols=250  Identities=13%  Similarity=0.052  Sum_probs=156.4

Q ss_pred             CCeeEEEEcCCCCeEEEEec-------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcE
Q 019482           64 GDPMTIAVNPSGDDFVCSTT-------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHL  136 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  136 (340)
                      .....++|.|+|+.+++...       ++.|..||..++...........   ...+....++|.++++.++++.....|
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~---~~~g~P~Gl~~~~dg~~l~vad~~~~i   94 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVN---GYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEET---TEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccc---cCCCcceeEEEeCCCCEEEEEECCCeE
Confidence            34678899999997765432       35677888776654322211100   012346789999999888877776778


Q ss_pred             EEEeCCCCceeeccccCc----cceeEEEecCCCCeEEEeeC---------------CCeEEEEEccCCeeEEEeecCCC
Q 019482          137 RIMHWPSLRIILDEPKAH----KSVLDMDFSLDSEFLATTST---------------DGSARIWKTEDGVAWTFLTRNSD  197 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~---------------d~~v~iwd~~~~~~~~~~~~~~~  197 (340)
                      ..++..............    ...+.+++.++|++.++-..               +|.|..++. .++...... .. 
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~-  171 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AF-  171 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EE-
T ss_pred             EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Cc-
Confidence            888876544332221111    13578999999988776432               234544443 233333222 11 


Q ss_pred             CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee---ec----cCCCeeEEEECCCCCEEEEeeCCCcEEE
Q 019482          198 EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK---RL----LRKPASVLSISLDGKYLAMGSKDGDICV  270 (340)
Q Consensus       198 ~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~----~~~~i~~~~~s~~~~~l~~~~~dg~i~i  270 (340)
                      ...+.++|+|++........++....+.|..||+.....+...   ..    .......+++..+|++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            2357899999865222222456677889999987644333211   11    1123467999999998888778899999


Q ss_pred             EeccCceEeecccccccccceeeEEEecCCe-EEEEEecCCcEEEEEecCCC
Q 019482          271 VDVKKMEINHWSKRLHLGTSIALVEFCPTQR-VVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       271 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ||.+.++....+...  ....++++|.||++ ++++.+.+|.|.-.+++.+.
T Consensus       252 ~dp~~g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         252 FGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             ECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EeCCCCEEEEEEECC--CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence            999887765544322  24678999999986 55666677777666666555

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=3.1e-11  Score=94.51  Aligned_cols=234  Identities=8%  Similarity=0.005  Sum_probs=150.9

Q ss_pred             CCeeEEEEcCCCCeEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           64 GDPMTIAVNPSGDDFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      -....++++++|+..++. ...+.+..++...........       ........++++++++++++....+.+++++-.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~   86 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPF-------NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS   86 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCC-------CSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEecc-------CCccCceEEEEcCCCCEEEeeeeeceeeeeeec
Confidence            457899999999966654 444666666655443222111       122345788999999888777766677776655


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCC
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGD  222 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  222 (340)
                      +....... .......++++.++++++++-..+..+..++....... ............+++++++..     .++...
T Consensus        87 ~~~~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~~-----~v~~~~  159 (260)
T d1rwia_          87 NNQTVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSGNV-----YVTDTD  159 (260)
T ss_dssp             SCCEECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE-ECCCCSCCSCCEEEECTTCCE-----EEEEGG
T ss_pred             cceeeeee-eeeeecccccccccceeEeeccccccccccccccceee-eeeecccCCcceeeecCCCCE-----eeeccc
Confidence            54444332 22346789999999988777666677777776543332 222122235678999999874     455567


Q ss_pred             cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeE
Q 019482          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRV  302 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  302 (340)
                      ++.|..+|.............-.....++++++|+++++-...+.|..++......... .... -....+|+++++|.+
T Consensus       160 ~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~-~~~~-~~~P~~i~~d~~g~l  237 (260)
T d1rwia_         160 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL-PFTG-LNTPLAVAVDSDRTV  237 (260)
T ss_dssp             GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEEC-CCCS-CCCEEEEEECTTCCE
T ss_pred             cccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEE-ccCC-CCCeEEEEEeCCCCE
Confidence            78899999876554433323335568899999999888887888899888765432221 1111 235689999999988


Q ss_pred             EEEEecCCcEE
Q 019482          303 VLTASKEWGAM  313 (340)
Q Consensus       303 l~~~~~dg~i~  313 (340)
                      +++-..++.|+
T Consensus       238 ~vad~~~~rI~  248 (260)
T d1rwia_         238 YVADRGNDRVV  248 (260)
T ss_dssp             EEEEGGGTEEE
T ss_pred             EEEECCCCEEE
Confidence            77766665444

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.49  E-value=2.1e-11  Score=97.76  Aligned_cols=228  Identities=12%  Similarity=0.068  Sum_probs=152.0

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL  144 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  144 (340)
                      .+..++++|||+++++...+++|..|+.......  +.       .....+.+++|+++|+++++...++.+..++....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~--~~-------~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI--HA-------TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE--EE-------ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEE--EE-------cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            4788999999999998888898887776543322  11       13467899999999999888888888888876543


Q ss_pred             cee-ecc--ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCC---------CCceeeEEEccCCCcc
Q 019482          145 RII-LDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNS---------DEKIELCRFSKDGTKP  212 (340)
Q Consensus       145 ~~~-~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~  212 (340)
                      ... ..+  .........+.+.++++++++-+.++.+..++...+..........         ......+.++  +..+
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l  177 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFL  177 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEE
T ss_pred             ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCce
Confidence            211 111  1223467889999999999888888999999988765443332110         1123445554  3332


Q ss_pred             eEEEEEecCCcceEEEEECCCCcEEee--eeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEe-eccccccccc
Q 019482          213 FLFCTVQRGDKALLAVYDISTWNKIGH--KRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEIN-HWSKRLHLGT  289 (340)
Q Consensus       213 ~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~  289 (340)
                          ..+....+.|..++.........  ..........++++++|++.++...++.|..++....... ..... . -.
T Consensus       178 ----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~-~-~~  251 (302)
T d2p4oa1         178 ----YVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQ-G-VI  251 (302)
T ss_dssp             ----EEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGG-T-CT
T ss_pred             ----eeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCC-C-CC
Confidence                46667788899888876543221  1122344567999999998888888899999987654322 22211 1 24


Q ss_pred             ceeeEEE---ecCCeEEEEEecC
Q 019482          290 SIALVEF---CPTQRVVLTASKE  309 (340)
Q Consensus       290 ~i~~~~~---~~~~~~l~~~~~d  309 (340)
                      ..++++|   ++|++.|..++..
T Consensus       252 ~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         252 GSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TEEEEEECCSTTTTTEEEEEECT
T ss_pred             CceEEEEcCCCCCCCEEEEECCC
Confidence            5789999   6788777655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.48  E-value=1.4e-10  Score=91.78  Aligned_cols=244  Identities=11%  Similarity=0.051  Sum_probs=159.7

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCC-eEEE-ccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGS-RFAA-GGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-~~~dg~i~~~d~~  142 (340)
                      ....++++|+|+.+++-..+..|++||.+. +....+.... ...........+++.++.. .+++ .+.++.|..++. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECG-KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBS-SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEEEecccC-CCcccccccccccccccccccceeccCCccccccccc-
Confidence            478999999999877767778899999653 3333332111 1111122345666666543 3333 344567777775 


Q ss_pred             CCceeecccc-CccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-cCCCCceeeEEEccCCCcceEEEEEec
Q 019482          143 SLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-RNSDEKIELCRFSKDGTKPFLFCTVQR  220 (340)
Q Consensus       143 ~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~  220 (340)
                      .++....+.. .......+++.++++++++....+.+.+++. +++.+..+. ..+......+++.+++..     .++.
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i-----~v~d  174 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEI-----FISD  174 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEE-----EEEE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeE-----Eeee
Confidence            4554444322 2345778999999998888777788888885 466666553 223346788899998874     5666


Q ss_pred             CCcceEEEEECCCCcEEeeeec--cCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEeecccccccccceeeEEEe
Q 019482          221 GDKALLAVYDISTWNKIGHKRL--LRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (340)
Q Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  297 (340)
                      ...+.|.+||.. ++.+..+..  .......+++.|+|+.+++-.. ++.|.+|+. +++.+..+...........+++.
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~  252 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALM  252 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEE
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEe
Confidence            778899999975 455544422  2345678999999997776544 456999984 56655444322213457899999


Q ss_pred             cCCeEEEEEecCCcEEEEEecCC
Q 019482          298 PTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       298 ~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      |||++++ ++.+..|++|++..-
T Consensus       253 ~dG~l~V-~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         253 DDGSVVL-ASKDYRLYIYRYVQL  274 (279)
T ss_dssp             TTTEEEE-EETTTEEEEEECSCC
T ss_pred             CCCcEEE-EeCCCeEEEEEeeee
Confidence            9998655 457899999998643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.37  E-value=7.3e-09  Score=83.21  Aligned_cols=244  Identities=12%  Similarity=-0.013  Sum_probs=151.9

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----CCcEEE
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DGHLRI  138 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~  138 (340)
                      ...+..++|.++|++.++-...+.|..|+.++.........       .......+++++||+++++...    .+.+..
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~-------~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~  111 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS-------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  111 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC-------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC-------CCCCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence            34467899999999777766778888888776654333321       2346789999999987776432    234555


Q ss_pred             EeCCCCceeecccc--CccceeEEEecCCCCeEEEeeC------CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCC
Q 019482          139 MHWPSLRIILDEPK--AHKSVLDMDFSLDSEFLATTST------DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       139 ~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (340)
                      .+............  .......+++.++|++.++...      .+.+..++... +.+..+.... ...+.++|+|+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~-~~pnGia~s~dg~  189 (319)
T d2dg1a1         112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNI-SVANGIALSTDEK  189 (319)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEE-SSEEEEEECTTSS
T ss_pred             EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeecc-ceeeeeeeccccc
Confidence            55554443222211  1235788999999987666432      13355555443 3333332222 2467899999998


Q ss_pred             cceEEEEEecCCcceEEEEECCCCc-EEeee-------eccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWN-KIGHK-------RLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      .+    .++....+.|..||+.... .....       .........+++.++|++.++....+.|.+||. .++.+..+
T Consensus       190 ~l----yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         190 VL----WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             EE----EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             eE----EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence            63    3555667899999976431 11110       111123467999999998888888999999995 56666544


Q ss_pred             cccc----cccceeeEEEecCCeEEEEEecC----CcEEEEEecCC
Q 019482          283 KRLH----LGTSIALVEFCPTQRVVLTASKE----WGAMITKLTVP  320 (340)
Q Consensus       283 ~~~~----~~~~i~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~  320 (340)
                      ....    ....+++++|.+++..+++...+    +.-.||.++..
T Consensus       265 ~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         265 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             eCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence            3211    12357899999988766655443    44556666543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.36  E-value=1e-09  Score=90.05  Aligned_cols=234  Identities=10%  Similarity=0.088  Sum_probs=131.1

Q ss_pred             CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeE--EEEe-cCCCEEEEEecCceeeeeecc--------
Q 019482           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDF--VCST-TNGGCKLFEVYGGATDINLLA--------  103 (340)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l--~~~~-~d~~i~iw~~~~~~~~~~~~~--------  103 (340)
                      +.+..|.++.++...      .............++++++++.+  +++. ..+.+..+.+...........        
T Consensus        60 ~~~~~~~i~~~~~~~------~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  133 (365)
T d1jofa_          60 KKWSSFAVKSPTEIV------HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE  133 (365)
T ss_dssp             TEEEEEEEEETTEEE------EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE
T ss_pred             CcEEEEEEeCCCCeE------EEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceec
Confidence            346677776443211      11111223456778889998844  3332 235566555432111000000        


Q ss_pred             --ccCCCCCCCCCeEEEEEecCCCeEEEccC-CCcEEEEeCCCCceee-----ccccCccceeEEEecCCCCeEEEe-eC
Q 019482          104 --KKMPPLQDAGPQKCLSFSVDGSRFAAGGV-DGHLRIMHWPSLRIIL-----DEPKAHKSVLDMDFSLDSEFLATT-ST  174 (340)
Q Consensus       104 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~-~~  174 (340)
                        ......+....+.++.|+|||++++++.. ...|.+|+........     ...........+.|+|+++++.+. ..
T Consensus       134 ~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~  213 (365)
T d1jofa_         134 KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             CcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence              00000112345789999999998887753 4578888765432211     111223467899999999987554 46


Q ss_pred             CCeEEEEEccCCeeEEE-----eec-------------CCCCceeeEEEccCCCcceEEEEEec---CCcceEEEEECCC
Q 019482          175 DGSARIWKTEDGVAWTF-----LTR-------------NSDEKIELCRFSKDGTKPFLFCTVQR---GDKALLAVYDIST  233 (340)
Q Consensus       175 d~~v~iwd~~~~~~~~~-----~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~---~~d~~i~i~d~~~  233 (340)
                      +++|.+|+...++....     ...             ........+.++|+|++++.  ...+   .....|..|++..
T Consensus       214 ~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv--snr~~~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA--SSRANKFELQGYIAGFKLRD  291 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE--EEEESSTTSCCEEEEEEECT
T ss_pred             CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE--EcccCCCccceEEEEEEecC
Confidence            78999999876543211     110             01113457899999997432  1111   1223477777765


Q ss_pred             CcEEeee------eccCCCeeEEEECC-CCCEEEEee-CCCcEEEEeccCc
Q 019482          234 WNKIGHK------RLLRKPASVLSISL-DGKYLAMGS-KDGDICVVDVKKM  276 (340)
Q Consensus       234 ~~~~~~~------~~~~~~i~~~~~s~-~~~~l~~~~-~dg~i~i~d~~~~  276 (340)
                      ...+...      .........++++| +|++|+++. .++.|.+|++...
T Consensus       292 ~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         292 CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            4322211      11234557799998 799887775 5789999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=1.2e-09  Score=85.22  Aligned_cols=196  Identities=10%  Similarity=0.006  Sum_probs=128.9

Q ss_pred             CCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPS  143 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~  143 (340)
                      .....++++++|+.+++....+.+++++-.+......        ......+.++++.++++++++-..+..+..++...
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~--------~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~  128 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP--------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS  128 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC--------CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee--------eeeeeecccccccccceeEeecccccccccccccc
Confidence            3467899999998777666656555554333322111        11235678999999998877766667777777655


Q ss_pred             CceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCc
Q 019482          144 LRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDK  223 (340)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d  223 (340)
                      ................++++|+++.+++...++.|..++.+..... .+..........+++.++|..     .++....
T Consensus       129 ~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l-----~vsd~~~  202 (260)
T d1rwia_         129 KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTV-----YVTEHNT  202 (260)
T ss_dssp             SSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCE-----EEEETTT
T ss_pred             ceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-eeeccccCCCccceeeeeeee-----eeeecCC
Confidence            4433222222345678999999998888888889999997654433 333233345788999999874     5666677


Q ss_pred             ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEec
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDV  273 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~  273 (340)
                      +.|..++.............-.....++++++|+++++-..+++|+.++.
T Consensus       203 ~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         203 NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             TEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             CEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            88888887654432211222245678999999987777666777776554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.5e-09  Score=83.78  Aligned_cols=215  Identities=15%  Similarity=0.120  Sum_probs=126.8

Q ss_pred             CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC---CcEEEEeCCCCceeeccccCccceeEEEe
Q 019482           86 GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD---GHLRIMHWPSLRIILDEPKAHKSVLDMDF  162 (340)
Q Consensus        86 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~~d~~~~~~~~~~~~~~~~i~~~~~  162 (340)
                      .|.|.|.+.... ..+..       +...+...+|||||+.||.....   ..+.+.+...+... ....+........|
T Consensus        20 ~l~i~d~dG~~~-~~l~~-------~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHR-------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAF   90 (269)
T ss_dssp             EEEEEETTSCSC-EEEEE-------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEE
T ss_pred             EEEEEcCCCCCc-EEEec-------CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeeccccccee
Confidence            366666654432 22221       34667889999999999876443   34677777665544 34445567788999


Q ss_pred             cCCCCeEEEeeC-CCeEEEEEc--cCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEee
Q 019482          163 SLDSEFLATTST-DGSARIWKT--EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGH  239 (340)
Q Consensus       163 ~~~~~~l~~~~~-d~~v~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  239 (340)
                      +|+|+.++.... ++...++..  .........  ..........+++++...++  .........|...++..+... .
T Consensus        91 spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~i~~~~~~~~~~~-~  165 (269)
T d2hqsa1          91 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAF--TSDQAGRPQVYKVNINGGAPQ-R  165 (269)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEE--EECTTSSCEEEEEETTSSCCE-E
T ss_pred             cCCCCeeeEeeecCCccceeecccccccceeee--ecccccccccccccccccee--cccccCCceEeeeecccccce-e
Confidence            999998877653 333333332  222222222  22334456677777775321  111223345777777766543 3


Q ss_pred             eeccCCCeeEEEECCCCCEEEEeeCCC---cEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC-C--cEE
Q 019482          240 KRLLRKPASVLSISLDGKYLAMGSKDG---DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE-W--GAM  313 (340)
Q Consensus       240 ~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~  313 (340)
                      ............|+|+++.++..+.++   .+.+.+...+......   . ........|+|||+.|+..+.. +  .++
T Consensus       166 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         166 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS---S-TFLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC---C-SSSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             eecccccccccccccccceeEEEeecCCceeeeEeecccccceEee---c-CccccceEECCCCCEEEEEEcCCCCcEEE
Confidence            344455677789999999988876544   3555565555443322   1 3356778999999988755543 3  345


Q ss_pred             EEEec
Q 019482          314 ITKLT  318 (340)
Q Consensus       314 iw~~~  318 (340)
                      +++++
T Consensus       242 ~~~~d  246 (269)
T d2hqsa1         242 LVSTD  246 (269)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            55554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.32  E-value=2.3e-09  Score=85.89  Aligned_cols=201  Identities=8%  Similarity=0.064  Sum_probs=128.1

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC------------
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV------------  132 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------  132 (340)
                      ....++|.++|+.++++.....+...+.+.............   ..-.....+++.++|++.++-..            
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g---~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEG---RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTS---CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccc---cccCCCcEEEECCCCCEEEecCccCccccccccee
Confidence            477899999999888877766688888766543221111100   01123578999999987776321            


Q ss_pred             ---CCcEEEEeCCCCceeeccccCccceeEEEecCCCC-----eEEEeeCCCeEEEEEccCCeeEE------EeecCCCC
Q 019482          133 ---DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSE-----FLATTSTDGSARIWKTEDGVAWT------FLTRNSDE  198 (340)
Q Consensus       133 ---dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~d~~v~iwd~~~~~~~~------~~~~~~~~  198 (340)
                         .|.|..++.. ++... ....-...+.++|+|++.     ++++-+..+.|..||+.....+.      .+......
T Consensus       149 ~~~~G~v~~~~~d-g~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         149 QEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             ccCCceEEEEeec-CceeE-eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccc
Confidence               2344444432 33222 222223446789998764     44555677889999876443222      12222223


Q ss_pred             ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEE-EEeeCCCcEEEEeccC
Q 019482          199 KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYL-AMGSKDGDICVVDVKK  275 (340)
Q Consensus       199 ~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~i~d~~~  275 (340)
                      ....+++.++|+.     .++....+.|.+||.+.++.+..+.......++++|.|+++.| ++.+.+|.|..+++..
T Consensus       227 ~pdGiavD~~Gnl-----yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         227 GADGMDFDEDNNL-----LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEEEEBTTCCE-----EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cceeeEEecCCcE-----EEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            4567999999984     3444567889999999887766666666778999999999755 5556678888888754

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7e-10  Score=93.97  Aligned_cols=228  Identities=10%  Similarity=-0.020  Sum_probs=140.8

Q ss_pred             EEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc---------CCCcEEEE
Q 019482           69 IAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG---------VDGHLRIM  139 (340)
Q Consensus        69 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~dg~i~~~  139 (340)
                      ..|.+++.++. -..+|.|.+||+.+++....+.....    ..-.+....||||+++++...         ..+.+.++
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~   96 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKI----ESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTT----TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccc----cccccceeEECCCCCeEEEEEcccceeEeeccccEEEE
Confidence            46888887664 35567899999987765332322111    223567788999999887753         35778999


Q ss_pred             eCCCCceeecc--ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCc-----------------e
Q 019482          140 HWPSLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEK-----------------I  200 (340)
Q Consensus       140 d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~-----------------v  200 (340)
                      |+.+++.....  ......+....|+|||+.+|... ++.|.+.+...+..++.......+.                 -
T Consensus        97 d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~  175 (465)
T d1xfda1          97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (465)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             EccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhcccc
Confidence            99987654322  22234567789999999998876 6789998887776655443322221                 2


Q ss_pred             eeEEEccCCCcceEEEEEe-----------cCC------------------cceEEEEECCCCcEEeeee------ccCC
Q 019482          201 ELCRFSKDGTKPFLFCTVQ-----------RGD------------------KALLAVYDISTWNKIGHKR------LLRK  245 (340)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~-----------~~~------------------d~~i~i~d~~~~~~~~~~~------~~~~  245 (340)
                      ..+.|||||+++.+..+-.           ...                  ...+.++|+.++.......      ....
T Consensus       176 ~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~  255 (465)
T d1xfda1         176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (465)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccc
Confidence            4677999999854322100           000                  1245667776544321111      1122


Q ss_pred             CeeEEEECCCCCEEEEeeC-C---CcEEEEeccCceEeecccccccccc----eeeEEEecCCeEE
Q 019482          246 PASVLSISLDGKYLAMGSK-D---GDICVVDVKKMEINHWSKRLHLGTS----IALVEFCPTQRVV  303 (340)
Q Consensus       246 ~i~~~~~s~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l  303 (340)
                      -+..+.|+|++++++.... +   ..+.++|..+++......... ...    -....|+|||+.+
T Consensus       256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~-~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES-EAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC-SSCCCCCCCCCEECTTSCSE
T ss_pred             eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC-CceEeccCCceeEccCCCee
Confidence            3678899999987665432 2   258889999987765443222 222    2346799999743

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.5e-09  Score=88.91  Aligned_cols=249  Identities=8%  Similarity=0.017  Sum_probs=142.2

Q ss_pred             CCeeEEEEcCCCCeEEEEec---------CCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCC
Q 019482           64 GDPMTIAVNPSGDDFVCSTT---------NGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDG  134 (340)
Q Consensus        64 ~~v~~~~~~~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  134 (340)
                      -.+....||||+++++....         .+.+.++|+.++.... +...    ......+....|||||+.||... ++
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~----~~~~~~l~~~~wSPDG~~iafv~-~~  134 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPP----EVSNAKLQYAGWGPKGQQLIFIF-EN  134 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCT----TCCSCCCSBCCBCSSTTCEEEEE-TT
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccCc----cCCccccceeeeccCCceEEEEe-cc
Confidence            35778899999998887643         4678899998776432 2111    01234456688999999998875 67


Q ss_pred             cEEEEeCCCCceeeccccCcc-c-----------------eeEEEecCCCCeEEEeeCC-Ce------------------
Q 019482          135 HLRIMHWPSLRIILDEPKAHK-S-----------------VLDMDFSLDSEFLATTSTD-GS------------------  177 (340)
Q Consensus       135 ~i~~~d~~~~~~~~~~~~~~~-~-----------------i~~~~~~~~~~~l~~~~~d-~~------------------  177 (340)
                      .|.+.+..++...+....... .                 -..+-|||||++||....| ..                  
T Consensus       135 nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~  214 (465)
T d1xfda1         135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK  214 (465)
T ss_dssp             EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred             eEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceee
Confidence            788888876655433322211 1                 1467799999999986422 22                  


Q ss_pred             ---------------EEEEEccCCeeEEEeec-----CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEE
Q 019482          178 ---------------ARIWKTEDGVAWTFLTR-----NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKI  237 (340)
Q Consensus       178 ---------------v~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  237 (340)
                                     +.++|+..+........     .....+..+.|+|+++. ++...--......+.++|..+++..
T Consensus       215 ~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~-~~~~~nR~q~~~~i~~~d~~tg~~~  293 (465)
T d1xfda1         215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV-AVTWLNRAQNVSILTLCDATTGVCT  293 (465)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE-EEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             eeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE-EEEEEccccccceEEEEcCCCCcEE
Confidence                           34445543332211110     11123567899999863 2211111233457889999998865


Q ss_pred             eeeeccC-CC----eeEEEECCCCCEEEE---eeCCC--cEEEEecc------CceEeecccccccccceeeE-EEecCC
Q 019482          238 GHKRLLR-KP----ASVLSISLDGKYLAM---GSKDG--DICVVDVK------KMEINHWSKRLHLGTSIALV-EFCPTQ  300 (340)
Q Consensus       238 ~~~~~~~-~~----i~~~~~s~~~~~l~~---~~~dg--~i~i~d~~------~~~~~~~~~~~~~~~~i~~~-~~~~~~  300 (340)
                      ....... ..    -....|+|||+.++.   .-.+|  .++.+++.      .+.....+..+  .-.|..+ +|++++
T Consensus       294 ~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G--~w~V~~i~~~d~~~  371 (465)
T d1xfda1         294 KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKG  371 (465)
T ss_dssp             EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTT
T ss_pred             EEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC--CceEEEEEEEcCCC
Confidence            4443322 22    234679999985432   22232  34444432      22223333222  2345554 688877


Q ss_pred             eEE-EEEecC--CcEEEEEecCCC
Q 019482          301 RVV-LTASKE--WGAMITKLTVPA  321 (340)
Q Consensus       301 ~~l-~~~~~d--g~i~iw~~~~~~  321 (340)
                      +.| +++..+  +.-.||.++..+
T Consensus       372 ~~vyF~a~~~~p~~~hly~v~l~g  395 (465)
T d1xfda1         372 NKIYFLSTEDLPRRRQLYSANTVG  395 (465)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSST
T ss_pred             CEEEEEEeCCCCCceEEEEEECCC
Confidence            655 455444  355688887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.23  E-value=3.8e-09  Score=84.31  Aligned_cols=196  Identities=11%  Similarity=-0.056  Sum_probs=132.4

Q ss_pred             CeEEEEEecCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCe--eEEE
Q 019482          114 PQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGV--AWTF  191 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~--~~~~  191 (340)
                      .+..++++|||+++++...+++|..++... +. ..+......+.+++|+|+|+++++...++.+..++.....  ....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            577899999999999988899998888543 32 2334445678999999999998888888888888875432  2222


Q ss_pred             eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeecc----------CCCeeEEEECCCCCEEEE
Q 019482          192 LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLL----------RKPASVLSISLDGKYLAM  261 (340)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~  261 (340)
                      ...........+.+.+++..     .++...++.+..+|...+.........          ......+.++. +.++++
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~-----~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~  180 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQY-----LTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVS  180 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEE-----EEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEE
T ss_pred             cccCCccccceeEEccCCCE-----EeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeee
Confidence            22233456789999999975     566677888988998876533222111          12344555543 234455


Q ss_pred             eeCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          262 GSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       262 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      .+..+.|..++.....................++|+++|+++++...++.|..++.
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         181 NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  236 (302)
T ss_dssp             ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence            56778888888766443322211111345678999999998888888887777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.15  E-value=5.3e-07  Score=71.16  Aligned_cols=219  Identities=12%  Similarity=0.047  Sum_probs=144.2

Q ss_pred             eEEEEcCCCCeEE-EEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc
Q 019482           67 MTIAVNPSGDDFV-CSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR  145 (340)
Q Consensus        67 ~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  145 (340)
                      -+..|++....|. +--..+.|.-||..+++.....         ....+.++++.+++.++++ +.+ .+..+|..+++
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~---------~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~   89 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHA---------LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV   89 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE---------CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE---------CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccce
Confidence            4567887555444 4345678999998887643221         2246789999999877665 444 58899998876


Q ss_pred             eeeccc--cC--ccceeEEEecCCCCeEEEeeC----CCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEE
Q 019482          146 IILDEP--KA--HKSVLDMDFSLDSEFLATTST----DGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCT  217 (340)
Q Consensus       146 ~~~~~~--~~--~~~i~~~~~~~~~~~l~~~~~----d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  217 (340)
                      ......  ..  ...++.+.+.|+|++.++...    .+.-.+|.+..++....... . .....++|+++++.+    .
T Consensus        90 ~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~-~~~Ng~~~s~d~~~l----~  163 (295)
T d2ghsa1          90 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-I-SIPNSICFSPDGTTG----Y  163 (295)
T ss_dssp             EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-E-SSEEEEEECTTSCEE----E
T ss_pred             eeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-c-CCcceeeecCCCceE----E
Confidence            443221  11  125889999999987666542    23556777777766544432 2 346789999999863    4


Q ss_pred             EecCCcceEEEEECCCCc------EE--eeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccccccccc
Q 019482          218 VQRGDKALLAVYDISTWN------KI--GHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGT  289 (340)
Q Consensus       218 ~~~~~d~~i~i~d~~~~~------~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  289 (340)
                      ++.+..+.|..|++....      ..  ............+++..+|++.++.-..+.|..||. .++.+..+...  ..
T Consensus       164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP--~~  240 (295)
T d2ghsa1         164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GK  240 (295)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CS
T ss_pred             EeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC--CC
Confidence            566778889999875321      11  111223345678999999998887777888999995 56666665432  24


Q ss_pred             ceeeEEEe-cCCeEEEE
Q 019482          290 SIALVEFC-PTQRVVLT  305 (340)
Q Consensus       290 ~i~~~~~~-~~~~~l~~  305 (340)
                      .+++++|- +|.+.|+.
T Consensus       241 ~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         241 QTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             BEEEEEEESTTSCEEEE
T ss_pred             ceEEEEEeCCCCCEEEE
Confidence            68999996 67655543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=2.9e-07  Score=72.16  Aligned_cols=198  Identities=10%  Similarity=0.065  Sum_probs=131.2

Q ss_pred             CeeEEEEcCCCC-eEEEE-ecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGD-DFVCS-TTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~-~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ....+++.++.. .+++. +.++.|..++... .....+..      ........+++.++++++++....+.+.+++..
T Consensus        71 ~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g-~~~~~~~~------~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~  143 (279)
T d1q7fa_          71 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-QFVRKFGA------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN  143 (279)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTTS-CEEEEECT------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccccccccccccccceeccCCccccccccccc-cceeecCC------CcccccceeccccCCcEEEEeeccceeeEeccC
Confidence            355666655543 34333 3445666666543 32222211      133567889999999888887777888888854


Q ss_pred             CCceeecc--ccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec-CCCCceeeEEEccCCCcceEEEEEe
Q 019482          143 SLRIILDE--PKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR-NSDEKIELCRFSKDGTKPFLFCTVQ  219 (340)
Q Consensus       143 ~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~  219 (340)
                       ++.+..+  ..+......+++.++++.+++....+.|++||. +++.+..+.. ........+++.++|+.     +++
T Consensus       144 -g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i-----~Va  216 (279)
T d1q7fa_         144 -GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEI-----LIA  216 (279)
T ss_dssp             -SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCE-----EEE
T ss_pred             -CceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeE-----EEE
Confidence             4544433  223346788999999998888888899999996 4666666632 22335788999999984     333


Q ss_pred             c-CCcceEEEEECCCCcEEeeeecc--CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceE
Q 019482          220 R-GDKALLAVYDISTWNKIGHKRLL--RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEI  278 (340)
Q Consensus       220 ~-~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  278 (340)
                      . ..+..|.+|+. +++.+..+...  ......+++.|+|.++ +++.++.|++|......+
T Consensus       217 d~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         217 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCCC
T ss_pred             ECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeecC
Confidence            3 34567999984 57766555433  2357889999999755 456789999999876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.98  E-value=2e-06  Score=68.67  Aligned_cols=209  Identities=17%  Similarity=0.152  Sum_probs=123.5

Q ss_pred             EEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC--CCEEEEEec--CceeeeeeccccCCCCCCCC
Q 019482           38 EIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN--GGCKLFEVY--GGATDINLLAKKMPPLQDAG  113 (340)
Q Consensus        38 ~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--~~i~iw~~~--~~~~~~~~~~~~~~~~~~~~  113 (340)
                      +|+.+++.+...      ...+.........++++++|+.+++...+  ....++.+.  ..........     .....
T Consensus        62 ~I~ri~p~g~~~------~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~  130 (319)
T d2dg1a1          62 NIFKINPETKEI------KRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED-----LSTAY  130 (319)
T ss_dssp             EEEEECTTTCCE------EEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-----SSSCC
T ss_pred             EEEEEECCCCeE------EEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccC-----CCccc
Confidence            456666655322      12233345578899999999877765432  233444443  3322211111     11234


Q ss_pred             CeEEEEEecCCCeEEEccC------CCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEccCC
Q 019482          114 PQKCLSFSVDGSRFAAGGV------DGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDG  186 (340)
Q Consensus       114 ~v~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~  186 (340)
                      ....+++.++|++.++-..      .+.+..++...+ .+..+...-...+.++|+|+++.|. +-+..+.|+.|++...
T Consensus       131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~  209 (319)
T d2dg1a1         131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  209 (319)
T ss_dssp             CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCC
Confidence            5788999999986665322      233555554432 2222222223457899999998664 4456789999998642


Q ss_pred             -eeEE----E--eecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC------CCeeEEEEC
Q 019482          187 -VAWT----F--LTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------KPASVLSIS  253 (340)
Q Consensus       187 -~~~~----~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~i~~~~~s  253 (340)
                       ....    .  ...........+++.++|+.     .++....+.|.+||. .++.+..+....      ..+++++|.
T Consensus       210 g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l-----~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~  283 (319)
T d2dg1a1         210 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNL-----YVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFI  283 (319)
T ss_dssp             SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCE-----EEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             CceeccccceeeeccCCccceeeeeEcCCCCE-----EEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEe
Confidence             1111    1  11111223667999999984     455566789999996 678777665432      356899999


Q ss_pred             CCCCEEEEeeC
Q 019482          254 LDGKYLAMGSK  264 (340)
Q Consensus       254 ~~~~~l~~~~~  264 (340)
                      |++..+++...
T Consensus       284 ~~~~~~~~t~~  294 (319)
T d2dg1a1         284 PGTNQLIICSN  294 (319)
T ss_dssp             TTSCEEEEEEE
T ss_pred             CCCCEEEEEcC
Confidence            98877766543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.96  E-value=1.4e-07  Score=73.88  Aligned_cols=226  Identities=12%  Similarity=0.023  Sum_probs=122.1

Q ss_pred             EEcCC--CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC-C-----CcEEEEeC
Q 019482           70 AVNPS--GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV-D-----GHLRIMHW  141 (340)
Q Consensus        70 ~~~~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~~~d~  141 (340)
                      ..+|+  |+.+|..+. +.|.+.|+.+++.. .+..       +.+.+...+|||||+.|+.... +     ..|.+++.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~-------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVS-------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEEC-------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEec-------CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEe
Confidence            35788  998887654 55888899877643 3322       4466788999999999886532 1     24777887


Q ss_pred             CCCceeeccccC------ccceeEEEecCCCCeEEEeeCC------CeEEEEEccCCeeEEEeecCCCCceeeEEEccCC
Q 019482          142 PSLRIILDEPKA------HKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDG  209 (340)
Q Consensus       142 ~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (340)
                      .+++........      ........|+|+|+.|+.....      ..+...+...+......    ..... ..+.+++
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~  150 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN----LGPAT-HILFADG  150 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC----SCSCS-EEEEETT
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec----CCccc-eeeecCC
Confidence            777654322211      1235678899999988875432      23556666555442221    11222 2344444


Q ss_pred             CcceEEEEEecCCc-----------ceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC--CCcEEEEeccCc
Q 019482          210 TKPFLFCTVQRGDK-----------ALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK--DGDICVVDVKKM  276 (340)
Q Consensus       210 ~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~  276 (340)
                      ...    +......           ............. ..............++++. .+.....  ...|.++|+.++
T Consensus       151 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         151 RRV----IGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EEE----EEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSC
T ss_pred             CeE----EEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc-cceecccccccceEEEeCCCC
Confidence            431    1111110           1111222222222 2222233344455566553 2222222  345888888877


Q ss_pred             eEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCC
Q 019482          277 EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVP  320 (340)
Q Consensus       277 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~  320 (340)
                      +..+.... .   ......|+|||+.|+.. .++.+++++++..
T Consensus       225 ~~~~lt~~-~---~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g  263 (281)
T d1k32a2         225 DLRKHTSF-T---DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE  263 (281)
T ss_dssp             SCEECCCC-C---SSCEEEEEESSSCEEEE-ETTEEEEECTTTC
T ss_pred             ceEEeecC-C---CcccccCcCCCCEEEEE-eCCEEEEEECCCC
Confidence            65543321 1   22334689999887764 4566776666433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.80  E-value=2e-06  Score=67.05  Aligned_cols=211  Identities=9%  Similarity=0.030  Sum_probs=110.3

Q ss_pred             EEecCCCCeeEEEEcCCCCeEEEEec-CC-----CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc
Q 019482           58 VFDESEGDPMTIAVNPSGDDFVCSTT-NG-----GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG  131 (340)
Q Consensus        58 ~~~~h~~~v~~~~~~~~~~~l~~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  131 (340)
                      .|..+.+.+...+|||||+.||.... ++     .|.+++..+++... +..................|+|+|+.|+...
T Consensus        35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            35567778899999999999986542 22     36666666665432 2111000011123456789999999887643


Q ss_pred             CC------CcEEEEeCCCCceeeccccCccceeEEEecCCCCeEEEeeCC-----------CeEEEEEccCCeeEEEeec
Q 019482          132 VD------GHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-----------GSARIWKTEDGVAWTFLTR  194 (340)
Q Consensus       132 ~d------g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------~~v~iwd~~~~~~~~~~~~  194 (340)
                      ..      ..+...+...+......   ........+.+.+..++....+           .................. 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  189 (281)
T d1k32a2         114 AMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD-  189 (281)
T ss_dssp             TTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC-
T ss_pred             ccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccC-
Confidence            22      23455555444332211   1122223333333333333221           112222323333322222 


Q ss_pred             CCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEecc
Q 019482          195 NSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVK  274 (340)
Q Consensus       195 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~  274 (340)
                      .. .......++++...    ..........|.++|+.+.+... +.... ......|+|||+.|+.. .++.|+++|+.
T Consensus       190 ~~-~~~~~~~~~~~~~~----~~~~~~~~~~l~~~d~~g~~~~~-lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~  261 (281)
T d1k32a2         190 MS-THVSSPVIVGHRIY----FITDIDGFGQIYSTDLDGKDLRK-HTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD  261 (281)
T ss_dssp             CS-SCCEEEEEETTEEE----EEECTTSSCEEEEEETTSCSCEE-CCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             Cc-cccceeeeeccccc----eecccccccceEEEeCCCCceEE-eecCC-CcccccCcCCCCEEEEE-eCCEEEEEECC
Confidence            11 23444555554321    12223345678889998776533 22222 22335689999998875 46889999999


Q ss_pred             CceEeec
Q 019482          275 KMEINHW  281 (340)
Q Consensus       275 ~~~~~~~  281 (340)
                      +++....
T Consensus       262 ~g~~~~i  268 (281)
T d1k32a2         262 TEKIEKI  268 (281)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEEe
Confidence            8876654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.72  E-value=1.2e-05  Score=63.16  Aligned_cols=189  Identities=12%  Similarity=0.019  Sum_probs=121.4

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccC----CCcEEE
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGV----DGHLRI  138 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~  138 (340)
                      ...+.++++.++|.++++ +.+| +.++|..+++........   .......+..+.+.|+|++.++...    .+.-.+
T Consensus        58 ~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~~~---~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l  132 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAELE---SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI  132 (295)
T ss_dssp             SSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEECSS---TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred             CCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEeeee---cCCCcccceeeEECCCCCEEEEeccccccccceeE
Confidence            456889999988876654 5566 999999887653322111   1112245788999999986665432    234566


Q ss_pred             EeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEccCC------eeEEEe-ecCCCCceeeEEEccCCC
Q 019482          139 MHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDG------VAWTFL-TRNSDEKIELCRFSKDGT  210 (340)
Q Consensus       139 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~------~~~~~~-~~~~~~~v~~~~~~~~~~  210 (340)
                      |.+..++..... ........+.|+++++.+. +-+..+.|..+++...      +..... .....+....+++..+|.
T Consensus       133 ~~~~~g~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn  211 (295)
T d2ghsa1         133 YHVAKGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH  211 (295)
T ss_dssp             EEEETTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC
T ss_pred             eeecCCcEEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC
Confidence            666666543322 2233567899999988654 4456788999887421      111111 112334578899999998


Q ss_pred             cceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEEC-CCCCEEEEee
Q 019482          211 KPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSIS-LDGKYLAMGS  263 (340)
Q Consensus       211 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~  263 (340)
                      .     .++.-..+.|..||. .++.+..+......+++++|- ||.+.|++.+
T Consensus       212 l-----Wva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         212 I-----WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             E-----EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             E-----EeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            4     333335678999995 578888887776778999995 6766665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.47  E-value=5.5e-05  Score=60.86  Aligned_cols=153  Identities=14%  Similarity=0.165  Sum_probs=97.4

Q ss_pred             CCCeEEEee-CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEe---------------cCCcceEEE
Q 019482          165 DSEFLATTS-TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ---------------RGDKALLAV  228 (340)
Q Consensus       165 ~~~~l~~~~-~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---------------~~~d~~i~i  228 (340)
                      ||++++... .+.+|.+-|+++.++.+.+.......+..+...++++..++++..-               ....+.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            688877665 6789999999999887655544445577777776666555432110               001134678


Q ss_pred             EECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCC---------------cEEEE----------------------
Q 019482          229 YDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDG---------------DICVV----------------------  271 (340)
Q Consensus       229 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---------------~i~i~----------------------  271 (340)
                      +|..+.+...+.... .....+.++|+|+++++.+.+.               .+.++                      
T Consensus       178 ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         178 VDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            899988776555543 4567899999999999886431               13333                      


Q ss_pred             -eccCceEeecccccccccceeeEEEecCCeEEEEEec-CCcEEEEEec
Q 019482          272 -DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASK-EWGAMITKLT  318 (340)
Q Consensus       272 -d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iw~~~  318 (340)
                       |.+.......+...........+..+|||+++++++. +.++.|.++.
T Consensus       257 VD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             EECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             ecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence             3322110000000111345678999999998876665 8999999996

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=0.00018  Score=55.10  Aligned_cols=222  Identities=8%  Similarity=-0.046  Sum_probs=135.3

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEE-EccCCCcEEEE
Q 019482           62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFA-AGGVDGHLRIM  139 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~~  139 (340)
                      +...+.+++|.+..+.|.-+. .++.|+..+++..........       ....+.++++..-+..|+ +-...+.|.+.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~-------~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ-------DLGSPEGIALDHLGRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT-------TCCCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe-------ccccccEEEEeccCCeEEEeccCCCEEEEE
Confidence            344588899998877776654 456788888766543322211       224678899987565555 44556789999


Q ss_pred             eCCCCceeeccccCccceeEEEecCCCCeEEEeeCC-Ce--EEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEE
Q 019482          140 HWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTSTD-GS--ARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFC  216 (340)
Q Consensus       140 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~--v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  216 (340)
                      ++..................++++|...++...... +.  |.--++..... ..+....-..+..+++.+.++.+|   
T Consensus       107 ~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lY---  182 (263)
T d1npea_         107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLC---  182 (263)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEE---
T ss_pred             ecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceEEEeecCcEEE---
Confidence            987554332222233467899999976666544322 23  44445543332 233322334578999998887632   


Q ss_pred             EEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEeecccccccccceeeEE
Q 019482          217 TVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVE  295 (340)
Q Consensus       217 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~  295 (340)
                       .+....+.|...|+.............. ...+++.  +.+|+.. ...+.|...|..+++....+.... .....+++
T Consensus       183 -w~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~-~~~~~gi~  257 (263)
T d1npea_         183 -WVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGIT  257 (263)
T ss_dssp             -EEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEE
T ss_pred             -EEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCC-CCCcceEE
Confidence             4445678899999976554433443333 3567764  4455555 456889999999888776553322 34555666


Q ss_pred             EecC
Q 019482          296 FCPT  299 (340)
Q Consensus       296 ~~~~  299 (340)
                      ..++
T Consensus       258 v~~~  261 (263)
T d1npea_         258 IALS  261 (263)
T ss_dssp             EECS
T ss_pred             EeCC
Confidence            6554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.29  E-value=0.00053  Score=55.12  Aligned_cols=199  Identities=11%  Similarity=0.064  Sum_probs=121.3

Q ss_pred             EEEEec---CCCeEEEcc-CCCcEEEEeCCCCceeecccc-CccceeEEEecC--CCCeEEEeeCC--------------
Q 019482          117 CLSFSV---DGSRFAAGG-VDGHLRIMHWPSLRIILDEPK-AHKSVLDMDFSL--DSEFLATTSTD--------------  175 (340)
Q Consensus       117 ~~~~~~---~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~d--------------  175 (340)
                      .+.+..   ||+++++.. .++.|.+.|+++.+......- ....+..+...+  +..+++..+.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455544   788887765 578899999999887543322 223556666654  45567766542              


Q ss_pred             ----CeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEec----------CCcceEEEE------------
Q 019482          176 ----GSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR----------GDKALLAVY------------  229 (340)
Q Consensus       176 ----~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~~d~~i~i~------------  229 (340)
                          +.+.+.|..+.+...++...  .....++++++|++.+..+.-+.          ..-..+.++            
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhcceEEEEEecCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                23677899988887777643  34778999999997432211000          011123333            


Q ss_pred             -----------ECCCC---cEEeeeeccCCCeeEEEECCCCCEEEEeeC-CCcEEEEeccCceEee-------cc--ccc
Q 019482          230 -----------DISTW---NKIGHKRLLRKPASVLSISLDGKYLAMGSK-DGDICVVDVKKMEINH-------WS--KRL  285 (340)
Q Consensus       230 -----------d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~-------~~--~~~  285 (340)
                                 |.+..   ..+..+... .....+.++|||+++++++. +..+.++|++......       ..  ...
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~  325 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP  325 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECC
T ss_pred             CcEEeCCceeecccccCCcceeEEEecC-CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeec
Confidence                       33321   111122222 23567899999999888764 8899999997522110       00  001


Q ss_pred             ccccceeeEEEecCCeEEEEEecCCcEEEEEec
Q 019482          286 HLGTSIALVEFCPTQRVVLTASKEWGAMITKLT  318 (340)
Q Consensus       286 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~  318 (340)
                      ..+-.-..-+|..+|....|---|..|.-|++.
T Consensus       326 elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         326 ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             ccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            112345667899989877777789999999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=0.00076  Score=51.48  Aligned_cols=198  Identities=8%  Similarity=-0.146  Sum_probs=119.1

Q ss_pred             CCeEEEEEecCCCeEEEc-cCCCcEEEEeCCCCceeeccccCccceeEEEecCCCCeEE-EeeCCCeEEEEEccCCeeEE
Q 019482          113 GPQKCLSFSVDGSRFAAG-GVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLA-TTSTDGSARIWKTEDGVAWT  190 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~v~iwd~~~~~~~~  190 (340)
                      ..+..++|.+..+.|+.. ..++.|+..++...............+.++++..-+..|. +-...+.|.+.++...... 
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-  114 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-  114 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-
Confidence            346778999877766655 4567788888876554433333334678899987555555 4445679999998755443 


Q ss_pred             EeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEE
Q 019482          191 FLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDIC  269 (340)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~  269 (340)
                      .+.......+..+++.|....+|.  .-.+.....|.--++............-.....+++++.++.|+.+ ...+.|.
T Consensus       115 ~l~~~~l~~p~~l~vdp~~g~ly~--t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~  192 (263)
T d1npea_         115 VLFDTGLVNPRGIVTDPVRGNLYW--TDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE  192 (263)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEE--EECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEecccccCCcEEEEecccCcEEE--eecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEE
Confidence            333233346889999998886432  2222233445555665444332222223456789999887777665 4567899


Q ss_pred             EEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEe
Q 019482          270 VVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKL  317 (340)
Q Consensus       270 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~  317 (340)
                      ..|+.......... ..  ....++++. ++.+..+-...+.|...+.
T Consensus       193 ~~~~~g~~~~~v~~-~~--~~P~~lav~-~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         193 CLNPAQPGRRKVLE-GL--QYPFAVTSY-GKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             EEETTEEEEEEEEE-CC--CSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCeEEEEC-CC--CCcEEEEEE-CCEEEEEECCCCEEEEEEC
Confidence            99997765443332 21  224577775 3444444444455444444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.14  E-value=0.0012  Score=53.38  Aligned_cols=276  Identities=11%  Similarity=0.006  Sum_probs=137.8

Q ss_pred             CccEEEEcCCCCcc---cCCCceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecC-CCEEEEEec
Q 019482           18 NVNLVVLGKSSRAS---SSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTN-GGCKLFEVY   93 (340)
Q Consensus        18 ~~~~~~~g~~~~~~---~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-~~i~iw~~~   93 (340)
                      ++++++.|+.....   .....-.++.+++.......  .... ...|.....+.++.++|.+++.|+.+ ..+.+||..
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~--~~~~-~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD--RTVT-VTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC--CEEE-ECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEee--cCCC-CCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            45777877743211   11111233445555444321  1111 12233345567888999999888765 589999998


Q ss_pred             CceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC------CcEEEEeCCCCceeec--cc------cCcc----
Q 019482           94 GGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD------GHLRIMHWPSLRIILD--EP------KAHK----  155 (340)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~--~~------~~~~----  155 (340)
                      +......-      .......-...+..+||++++.++.+      ..+.+||..+.+-...  ..      ....    
T Consensus       107 ~~~w~~~~------~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~  180 (387)
T d1k3ia3         107 SDSWIPGP------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  180 (387)
T ss_dssp             GTEEEECC------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             cCcccccc------cccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence            87653211      11122233466777899998888753      3589999887643211  00      0000    


Q ss_pred             --ceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec--CC---CC--ceeeEEEc-cCCCcceEEEEEecCCc--
Q 019482          156 --SVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR--NS---DE--KIELCRFS-KDGTKPFLFCTVQRGDK--  223 (340)
Q Consensus       156 --~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~--~~---~~--~v~~~~~~-~~~~~~~~~~~~~~~~d--  223 (340)
                        .-..+...++++.++.+..++.+.+++..+.........  ..   ..  .-.++.+. .+++.     ++.++..  
T Consensus       181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v-----~v~GG~~~~  255 (387)
T d1k3ia3         181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI-----LTFGGSPDY  255 (387)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEE-----EEECCBSSS
T ss_pred             ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCce-----EEEEeccCC
Confidence              001122234677777777777777777766543322110  00   00  01122222 23332     2333311  


Q ss_pred             ------ceEEEEECCCCc---EEe-eee--ccCCCeeEEEECCCCCEEEEeeCC-----------CcEEEEeccCceEee
Q 019482          224 ------ALLAVYDISTWN---KIG-HKR--LLRKPASVLSISLDGKYLAMGSKD-----------GDICVVDVKKMEINH  280 (340)
Q Consensus       224 ------~~i~i~d~~~~~---~~~-~~~--~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~  280 (340)
                            ....+.+.....   ... ...  .....-.+....+||+++++|+.+           ..+.+||..+.+-..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~  335 (387)
T d1k3ia3         256 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK  335 (387)
T ss_dssp             SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred             CCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE
Confidence                  123333332211   111 110  011122355667899999998753           147889988776433


Q ss_pred             cccccccccceee-EEEecCCeEEEEEec
Q 019482          281 WSKRLHLGTSIAL-VEFCPTQRVVLTASK  308 (340)
Q Consensus       281 ~~~~~~~~~~i~~-~~~~~~~~~l~~~~~  308 (340)
                      .-.... ...-.+ ....+||+.++.|+.
T Consensus       336 ~~~~~~-~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         336 QNPNSI-VRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCCCSS-CCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCCC-cccceEEEEECCCCEEEEEeCC
Confidence            211111 111122 345799999999885

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=0.00093  Score=51.11  Aligned_cols=227  Identities=9%  Similarity=-0.062  Sum_probs=130.9

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-CCCcEEEEeCCCCc----eeeccc
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-VDGHLRIMHWPSLR----IILDEP  151 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~----~~~~~~  151 (340)
                      +|+.+... .|+-.++++.+.....        +....+..+.|.+..+.|+-.. ..+.|.-.++....    ......
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~~~~--------~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~   73 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYTSLI--------PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS   73 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEE--------CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC
T ss_pred             EEEEECCC-eEEEEECCCCcceeee--------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe
Confidence            34444443 3888888765432221        1335678899998777776554 45667666664321    111122


Q ss_pred             cCccceeEEEecCCCCeEEEe-eCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEE
Q 019482          152 KAHKSVLDMDFSLDSEFLATT-STDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYD  230 (340)
Q Consensus       152 ~~~~~i~~~~~~~~~~~l~~~-~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  230 (340)
                      .....+..+++.+.+..|..+ ...+.|.+.++........+. ........++++|....++.   ...+..+.|.-.+
T Consensus        74 ~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~---~~~~~~~~I~r~~  149 (266)
T d1ijqa1          74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYW---TDWGTPAKIKKGG  149 (266)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEE---EECSSSCEEEEEE
T ss_pred             CCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEEEEcccCeEEE---eccCCCcceeEec
Confidence            222356778888755554444 456789999987665444443 33346889999997776432   2334456777777


Q ss_pred             CCCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecC
Q 019482          231 ISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKE  309 (340)
Q Consensus       231 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  309 (340)
                      +............-.....+++++.++.|+.+ ...+.|...++...................++++. ++.++.+-..+
T Consensus       150 ~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~  228 (266)
T d1ijqa1         150 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  228 (266)
T ss_dssp             TTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             cCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCC
Confidence            76554433333333556889999987777766 45678999998765433222221111245567776 34545554455


Q ss_pred             CcEEEEEe
Q 019482          310 WGAMITKL  317 (340)
Q Consensus       310 g~i~iw~~  317 (340)
                      +.|...+.
T Consensus       229 ~~I~~~~~  236 (266)
T d1ijqa1         229 EAIFSANR  236 (266)
T ss_dssp             TEEEEEET
T ss_pred             CeEEEEEC
Confidence            65555443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=0.0012  Score=50.29  Aligned_cols=232  Identities=10%  Similarity=0.085  Sum_probs=139.9

Q ss_pred             EEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCc-e
Q 019482           68 TIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLR-I  146 (340)
Q Consensus        68 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~  146 (340)
                      +.-.+|..+.||.-+ ..+++++|+++.+......        ...+|.--.|-.+. .|+..+ +..|+-|+++... +
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~--------~~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P  135 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--------MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQP  135 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--------CSSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE--------cCCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCc
Confidence            455678888887666 4579999999887766553        22455556675444 555554 4579999996433 3


Q ss_pred             eeccccCc----cceeEEEecCCCCeEEEee-------CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEE
Q 019482          147 ILDEPKAH----KSVLDMDFSLDSEFLATTS-------TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLF  215 (340)
Q Consensus       147 ~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  215 (340)
                      ...+..|.    ..|.....+++.++++..+       -.|.+.+|..+.+.. +.+. +|.+....+.+.-+....-++
T Consensus       136 ~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ie-Ghaa~F~~~~~~g~~~~~~lf  213 (327)
T d1utca2         136 VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE-GHAASFAQFKMEGNAEESTLF  213 (327)
T ss_dssp             EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC-CSEEEEEEECCTTCSSCEEEE
T ss_pred             hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-cccc-ceeeeeEEEEcCCCCCCceEE
Confidence            33333333    2688888899999876543       236788999875432 3343 343333333333222222233


Q ss_pred             EEEec-CCcceEEEEECCCCc---E---Ee--eee-cc---CCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecc
Q 019482          216 CTVQR-GDKALLAVYDISTWN---K---IG--HKR-LL---RKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       216 ~~~~~-~~d~~i~i~d~~~~~---~---~~--~~~-~~---~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  282 (340)
                      +++.- ...+.+++.++....   +   .+  .+. ..   ..-.-++..|+.-..++..+.-|.|++||+.++.++..-
T Consensus       214 ~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n  293 (327)
T d1utca2         214 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  293 (327)
T ss_dssp             EEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence            33332 345789999986521   1   01  111 11   122456788888889999999999999999999988654


Q ss_pred             cccccccceeeEEEecCCeEEEEEecCCcEEE
Q 019482          283 KRLHLGTSIALVEFCPTQRVVLTASKEWGAMI  314 (340)
Q Consensus       283 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  314 (340)
                      . .. ..+|-..+-+.+..-+++...+|.|.-
T Consensus       294 R-Is-~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         294 R-IS-GETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             E-CC-SSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             e-cC-CCceEEeccCCCCceEEEECCCCeEEE
Confidence            3 22 345554444444444555557776643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.94  E-value=0.0029  Score=54.06  Aligned_cols=172  Identities=9%  Similarity=-0.006  Sum_probs=101.1

Q ss_pred             CcEEEEeCCCCceeeccccCcccee---------EEEecCCCC---eEEEeeCCCeEEEEEccCCeeEEEeecCCC----
Q 019482          134 GHLRIMHWPSLRIILDEPKAHKSVL---------DMDFSLDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSD----  197 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~~i~---------~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~----  197 (340)
                      ..+.-.|+++++.+..+...+..+.         ......+++   .++.++.+|.+.+.|.++++.+........    
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            4577889999998876654332211         122223443   467788999999999999988744221100    


Q ss_pred             --------------------------------C--ceeeEEEccCCCcceEEEEE-------------------------
Q 019482          198 --------------------------------E--KIELCRFSKDGTKPFLFCTV-------------------------  218 (340)
Q Consensus       198 --------------------------------~--~v~~~~~~~~~~~~~~~~~~-------------------------  218 (340)
                                                      +  .-...+++|+...++.....                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                            0  00125666666543321100                         


Q ss_pred             -------ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccce
Q 019482          219 -------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSI  291 (340)
Q Consensus       219 -------~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i  291 (340)
                             .....+.|.-+|+.+++.+-........... .++-.+.++++|+.||.++.+|.++++.+-...... ...-
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g-~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~-~~~a  509 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG-TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS-GGIG  509 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB-CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCS
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcc-eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCC-Ccee
Confidence                   0012257888999999877555433222211 122246688889999999999999999987664432 2222


Q ss_pred             eeEEEecCCe-EEEEEe
Q 019482          292 ALVEFCPTQR-VVLTAS  307 (340)
Q Consensus       292 ~~~~~~~~~~-~l~~~~  307 (340)
                      .-+.|..||+ ||+...
T Consensus       510 ~P~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         510 SPMTYSFKGKQYIGSMY  526 (571)
T ss_dssp             CCEEEEETTEEEEEEEE
T ss_pred             cceEEEECCEEEEEEEe
Confidence            3366777885 554433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.88  E-value=0.0057  Score=52.10  Aligned_cols=221  Identities=10%  Similarity=0.051  Sum_probs=127.0

Q ss_pred             CCEEEEEecCceeeeeeccccCCCC-C----------------------CCCCe-EEEEEecCCCeEEEccC--------
Q 019482           85 GGCKLFEVYGGATDINLLAKKMPPL-Q----------------------DAGPQ-KCLSFSVDGSRFAAGGV--------  132 (340)
Q Consensus        85 ~~i~iw~~~~~~~~~~~~~~~~~~~-~----------------------~~~~v-~~~~~~~~~~~l~~~~~--------  132 (340)
                      |.|.-+|..+++...++........ .                      ....+ ..+++.++..+++.+..        
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~  257 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNRE  257 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccc
Confidence            5688999999988777654221110 0                      01111 23556666665544321        


Q ss_pred             -----------CCcEEEEeCCCCceeeccccCcccee---------EEEecCCCC---eEEEeeCCCeEEEEEccCCeeE
Q 019482          133 -----------DGHLRIMHWPSLRIILDEPKAHKSVL---------DMDFSLDSE---FLATTSTDGSARIWKTEDGVAW  189 (340)
Q Consensus       133 -----------dg~i~~~d~~~~~~~~~~~~~~~~i~---------~~~~~~~~~---~l~~~~~d~~v~iwd~~~~~~~  189 (340)
                                 ...|.-.|+++++....+...+..+.         -+....+++   .++.++.+|.+.++|.++++.+
T Consensus       258 ~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i  337 (560)
T d1kv9a2         258 VRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (560)
T ss_dssp             HHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccc
Confidence                       23577778899987765543332211         122222343   5777889999999999999887


Q ss_pred             EEeecCCCC-----------------------------------ceeeEEEccCCCcceEEEEE----------------
Q 019482          190 TFLTRNSDE-----------------------------------KIELCRFSKDGTKPFLFCTV----------------  218 (340)
Q Consensus       190 ~~~~~~~~~-----------------------------------~v~~~~~~~~~~~~~~~~~~----------------  218 (340)
                      .........                                   .-...+++|+...+++...-                
T Consensus       338 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~  417 (560)
T d1kv9a2         338 SAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRK  417 (560)
T ss_dssp             EEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCS
T ss_pred             ccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecccccccccc
Confidence            554321100                                   01134566666543321110                


Q ss_pred             ---------------ecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeeccc
Q 019482          219 ---------------QRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSK  283 (340)
Q Consensus       219 ---------------~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  283 (340)
                                     .....+.|.-+|+.+++.+-...... +...-.++-.+.++++|+.||.++.+|.++++.+-...
T Consensus       418 ~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         418 AFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             SCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence                           01123678899999998876554332 22222233356788899999999999999999987664


Q ss_pred             ccccccceeeEEEecCCe-EEEEEe
Q 019482          284 RLHLGTSIALVEFCPTQR-VVLTAS  307 (340)
Q Consensus       284 ~~~~~~~i~~~~~~~~~~-~l~~~~  307 (340)
                      ... ...-.-+.+..||+ +|+...
T Consensus       497 l~~-~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         497 AQS-GIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             CSS-CCCSCCEEEEETTEEEEEEEE
T ss_pred             CCC-CccccCEEEEECCEEEEEEEe
Confidence            432 12222356667885 555433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.81  E-value=0.0072  Score=51.53  Aligned_cols=159  Identities=9%  Similarity=0.018  Sum_probs=89.6

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc-----CCCcEEEEeCCCCceeec
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG-----VDGHLRIMHWPSLRIILD  149 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~~~d~~~~~~~~~  149 (340)
                      +..++.++.|+.+.-.|.++++..........   .....++.--.-.++..++.++     .+|.|+-+|+.+++.+.+
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~---~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  191 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDP---KVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCG---GGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhcccccccc---ccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEE
Confidence            34677788888888889888876554422110   0001111100111333333222     367899999999998765


Q ss_pred             cccCc-------------------------------------cce-eEEEecCCCCeEEEeeC----------------C
Q 019482          150 EPKAH-------------------------------------KSV-LDMDFSLDSEFLATTST----------------D  175 (340)
Q Consensus       150 ~~~~~-------------------------------------~~i-~~~~~~~~~~~l~~~~~----------------d  175 (340)
                      +....                                     ..+ ...++.+....+..+..                .
T Consensus       192 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s  271 (571)
T d2ad6a1         192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWT  271 (571)
T ss_dssp             EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTT
T ss_pred             EeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccc
Confidence            32110                                     011 23455666555554432                2


Q ss_pred             CeEEEEEccCCeeEEEeecCCCC--------ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEe
Q 019482          176 GSARIWKTEDGVAWTFLTRNSDE--------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIG  238 (340)
Q Consensus       176 ~~v~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  238 (340)
                      ..+.-.|.++++.+-.++..+..        .........+++..  ..++..+.++.+.++|..+++.+.
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~--~~v~~~~k~G~l~vlDr~tG~~i~  340 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMT--PLLSHIDRNGILYTLNRENGNLIV  340 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEE--EEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccc--cceeeccccceEEEEecCCCcEee
Confidence            46778899999988777643221        11222233344421  125677889999999999998764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.77  E-value=0.0089  Score=51.23  Aligned_cols=170  Identities=11%  Similarity=-0.010  Sum_probs=98.5

Q ss_pred             CcEEEEeCCCCceeeccccCcc---------ceeEEEe-cCCCC---eEEEeeCCCeEEEEEccCCeeEEEeecCCC---
Q 019482          134 GHLRIMHWPSLRIILDEPKAHK---------SVLDMDF-SLDSE---FLATTSTDGSARIWKTEDGVAWTFLTRNSD---  197 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~~~~---------~i~~~~~-~~~~~---~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~---  197 (340)
                      ..|.-.|+++++....++..+.         ...-+.. ..+++   .++....+|.+.++|.++++.+........   
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~  357 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccc
Confidence            3477889999998775544322         1111221 22443   577788999999999999988754321100   


Q ss_pred             ---------Cc--------------------------eeeEEEccCCCcceEEEE-------------------------
Q 019482          198 ---------EK--------------------------IELCRFSKDGTKPFLFCT-------------------------  217 (340)
Q Consensus       198 ---------~~--------------------------v~~~~~~~~~~~~~~~~~-------------------------  217 (340)
                               .+                          -...+++|+...+++...                         
T Consensus       358 ~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (596)
T d1w6sa_         358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (596)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccc
Confidence                     00                          012355555544332110                         


Q ss_pred             -Eec--------CCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccc
Q 019482          218 -VQR--------GDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLG  288 (340)
Q Consensus       218 -~~~--------~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  288 (340)
                       ...        ..-+.|.-||+.+++.+-...... +...-.++-.|.+++.|+.||.++.+|.++++.+-.+.... .
T Consensus       438 ~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~-~  515 (596)
T d1w6sa_         438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS-G  515 (596)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-C
T ss_pred             cccCcccCcccCCCcceEEEEeCCCCceecccCCCC-CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC-C
Confidence             000        012578889999988764443222 22222233457788889999999999999999987664332 2


Q ss_pred             cceeeEEEecCCe-EEEE
Q 019482          289 TSIALVEFCPTQR-VVLT  305 (340)
Q Consensus       289 ~~i~~~~~~~~~~-~l~~  305 (340)
                      ..-.=+.+..||+ ||+.
T Consensus       516 ~~a~P~tY~~dGkQYvav  533 (596)
T d1w6sa_         516 AIGYPMTYTHKGTQYVAI  533 (596)
T ss_dssp             CCSCCEEEEETTEEEEEE
T ss_pred             cccCCeEEEECCEEEEEE
Confidence            2223355667885 4543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.0045  Score=47.13  Aligned_cols=208  Identities=7%  Similarity=-0.099  Sum_probs=122.2

Q ss_pred             CCCCeeEEEEcCCCCeEEEEe-cCCCEEEEEecCceee---eeeccccCCCCCCCCCeEEEEEecCCCeEEEc-cCCCcE
Q 019482           62 SEGDPMTIAVNPSGDDFVCST-TNGGCKLFEVYGGATD---INLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG-GVDGHL  136 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i  136 (340)
                      ....+.+++|++..+.|.-+. .++.|.-.+++.....   .....      .....+..+++.+.+..|+.+ ...+.|
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~------~~~~~p~glAvD~~~~~lY~~d~~~~~I  101 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS------RDIQAPDGLAVDWIHSNIYWTDSVLGTV  101 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC------SSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe------CCCCCcceEEEeeccceEEEEecCCCEE
Confidence            445678999999888777655 3455665565432211   11111      122456678888766555544 456789


Q ss_pred             EEEeCCCCceeeccccCccceeEEEecCCCCeEEEee--CCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceE
Q 019482          137 RIMHWPSLRIILDEPKAHKSVLDMDFSLDSEFLATTS--TDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFL  214 (340)
Q Consensus       137 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  214 (340)
                      .+.++..................++++|...+|....  ..+.|.-.++.... ...+....-..+..+++.+.+..++ 
T Consensus       102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~lY-  179 (266)
T d1ijqa1         102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLY-  179 (266)
T ss_dssp             EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEE-
T ss_pred             EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-eecccccccceeeEEEeeccccEEE-
Confidence            9999886654444444445678999999655555443  33467667765433 3334323334578999999887643 


Q ss_pred             EEEEecCCcceEEEEECCCCcEEeeeeccC--CCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEeecc
Q 019482          215 FCTVQRGDKALLAVYDISTWNKIGHKRLLR--KPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWS  282 (340)
Q Consensus       215 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~  282 (340)
                         .+....+.|...|+.............  .....+++.  +.+|+.. ..++.|...+..+++....+
T Consensus       180 ---w~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         180 ---WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             ---EEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ---EecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence               445667889999987654333332222  234456655  3455554 45677887777776544433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.50  E-value=0.015  Score=46.58  Aligned_cols=244  Identities=11%  Similarity=0.041  Sum_probs=127.2

Q ss_pred             eeEEEEcCCCCeEEEEecCC-----------CEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-
Q 019482           66 PMTIAVNPSGDDFVCSTTNG-----------GCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-  133 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-  133 (340)
                      +.......+|+.++.|+.+.           .+.+||..++.........    ..+.......++.+++++++.|+.+ 
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~----~~~~~~~~~~~~~~~g~i~v~Gg~~~   97 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV----TKHDMFCPGISMDGNGQIVVTGGNDA   97 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE----CSCCCSSCEEEECTTSCEEEECSSST
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCC----CCcccceeEEEEecCCcEEEeecCCC
Confidence            34444556788888777431           3678999887643221111    1122334566788999999888755 


Q ss_pred             CcEEEEeCCCCceeecccc-CccceeEEEecCCCCeEEEeeCC------CeEEEEEccCCeeEEEeecCCCC--------
Q 019482          134 GHLRIMHWPSLRIILDEPK-AHKSVLDMDFSLDSEFLATTSTD------GSARIWKTEDGVAWTFLTRNSDE--------  198 (340)
Q Consensus       134 g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d------~~v~iwd~~~~~~~~~~~~~~~~--------  198 (340)
                      ..+.+||..+..-...-.. ....-..++..+|++.++.++.+      ..+.+||..+.+-.. +......        
T Consensus        98 ~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~  176 (387)
T d1k3ia3          98 KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQ  176 (387)
T ss_dssp             TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTT
T ss_pred             cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee-cCCCccccccccccc
Confidence            5799999887654321111 11123456677899998888743      368999988765321 1110000        


Q ss_pred             ------ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeec--c----C--CCeeEEEE-CCCCCEEEEee
Q 019482          199 ------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRL--L----R--KPASVLSI-SLDGKYLAMGS  263 (340)
Q Consensus       199 ------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~----~--~~i~~~~~-s~~~~~l~~~~  263 (340)
                            .-..+...++++.     +..++....+.++|..+.........  .    .  ..-.++.+ ..+++.++.|+
T Consensus       177 ~~~~~~~~~~~~~~~~G~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG  251 (387)
T d1k3ia3         177 GLYRSDNHAWLFGWKKGSV-----FQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGG  251 (387)
T ss_dssp             GGGTTTCSCCEEECGGGCE-----EECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECC
T ss_pred             ceeeccceeEEEEeCCCCE-----EEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEe
Confidence                  0011122234442     34555667777788776553221111  0    0  01122223 34677777776


Q ss_pred             CCC--------cEEEEeccC---c-eEeecccccccccceeeEEEecCCeEEEEEecCC-----------cEEEEEecC
Q 019482          264 KDG--------DICVVDVKK---M-EINHWSKRLHLGTSIALVEFCPTQRVVLTASKEW-----------GAMITKLTV  319 (340)
Q Consensus       264 ~dg--------~i~i~d~~~---~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------~i~iw~~~~  319 (340)
                      ...        ...+.++..   . ..............-.+....+||++++.|+.+.           .+.+||...
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~  330 (387)
T d1k3ia3         252 SPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  330 (387)
T ss_dssp             BSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             ccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCC
Confidence            421        233333321   1 1111111111112233556668999999988542           356777643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.47  E-value=0.012  Score=50.11  Aligned_cols=81  Identities=15%  Similarity=0.073  Sum_probs=53.7

Q ss_pred             cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe-
Q 019482          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-  301 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  301 (340)
                      -+.+.-||+.+++.+-..+... +...-.++-.|.++++|+.||.++.+|.++++.+-.+.... ...-.=+.|..||+ 
T Consensus       456 ~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~-~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         456 FGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT-GVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEE
T ss_pred             cccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC-CccccCEEEEECCEE
Confidence            4679999999999876655432 22211233467788899999999999999999987654322 11112255667885 


Q ss_pred             EEEE
Q 019482          302 VVLT  305 (340)
Q Consensus       302 ~l~~  305 (340)
                      ||+.
T Consensus       534 Yv~v  537 (573)
T d1kb0a2         534 YVSV  537 (573)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.06  E-value=0.072  Score=45.40  Aligned_cols=236  Identities=8%  Similarity=-0.012  Sum_probs=133.4

Q ss_pred             CeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEE-EEEecCCCeEEEccC------CCcEEEEeCCCCceee
Q 019482           76 DDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKC-LSFSVDGSRFAAGGV------DGHLRIMHWPSLRIIL  148 (340)
Q Consensus        76 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~  148 (340)
                      .+++.++.|+.|.-.|.++++...........   ....++. ..+  -+..++.+..      .|.|+-+|+++|+.+.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~---~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIK---VGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGG---GTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccc---cccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEE
Confidence            46888888988888898888877665321110   0011110 011  1334555542      4889999999999876


Q ss_pred             ccccCc-------------------------------------c-ceeEEEecCCCCeEEEeeC----------------
Q 019482          149 DEPKAH-------------------------------------K-SVLDMDFSLDSEFLATTST----------------  174 (340)
Q Consensus       149 ~~~~~~-------------------------------------~-~i~~~~~~~~~~~l~~~~~----------------  174 (340)
                      ++....                                     . .-..+.+.+...++..+..                
T Consensus       197 ~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~y  276 (596)
T d1w6sa_         197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW  276 (596)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred             EeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccc
Confidence            543110                                     0 1123455665555544422                


Q ss_pred             CCeEEEEEccCCeeEEEeecCCCC--------ceeeEEE-ccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-
Q 019482          175 DGSARIWKTEDGVAWTFLTRNSDE--------KIELCRF-SKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-  244 (340)
Q Consensus       175 d~~v~iwd~~~~~~~~~~~~~~~~--------~v~~~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-  244 (340)
                      ..++.-.|+++++.+-.++..+..        ....+.. ..+++..  -.++....++.+.++|..+++.+....... 
T Consensus       277 s~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~--~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~  354 (596)
T d1w6sa_         277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR--KLLTHPDRNGIVYTLDRTDGALVSANKLDDT  354 (596)
T ss_dssp             SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE--EEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             cccccccccccccccccccceeccccCCccccceeeeeccccccccc--cceeccccccceeeecCCCCceeeecccccc
Confidence            245778899999988766533221        1111111 2344432  225677889999999999998764332110 


Q ss_pred             --------------------------------------CCeeEEEECCCCCEEEEeeC----------------------
Q 019482          245 --------------------------------------KPASVLSISLDGKYLAMGSK----------------------  264 (340)
Q Consensus       245 --------------------------------------~~i~~~~~s~~~~~l~~~~~----------------------  264 (340)
                                                            ..-..++++|+..+++....                      
T Consensus       355 ~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~  434 (596)
T d1w6sa_         355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA  434 (596)
T ss_dssp             CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             ccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccc
Confidence                                                  00112456666555544321                      


Q ss_pred             -----------------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          265 -----------------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       265 -----------------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                                       -|.|.-||+.+++..-....   ..+..+-..+-.|.+++.|+.||.++.+|.+..+
T Consensus       435 ~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~---~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe  505 (596)
T d1w6sa_         435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD  505 (596)
T ss_dssp             EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccCcccCcccCCCcceEEEEeCCCCceecccCC---CCCCccceeEecCCEEEEECCCCeEEEEECCCCc
Confidence                             14677888888876644322   2233333344556778888889988877776544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.97  E-value=0.067  Score=43.58  Aligned_cols=221  Identities=13%  Similarity=0.075  Sum_probs=114.6

Q ss_pred             eeEEEEcCCCCeEEEEe-cC----CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCC-------
Q 019482           66 PMTIAVNPSGDDFVCST-TN----GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVD-------  133 (340)
Q Consensus        66 v~~~~~~~~~~~l~~~~-~d----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  133 (340)
                      +...+++|+++++|.+- ..    ..++++|+.+++........        .....+.|.+|++.|+....+       
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--------~~~~~~~W~~D~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------VKFSCMAWTHDGKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--------ccccceEEcCCCCEEEEEEeccccCccc
Confidence            45678899999888542 22    37999999998865433221        112458899999977653322       


Q ss_pred             ---------CcEEEEeCCCCce--eeccccCc--cceeEEEecCCCCeEEEee---CCCe--EEEEEccCCee-------
Q 019482          134 ---------GHLRIMHWPSLRI--ILDEPKAH--KSVLDMDFSLDSEFLATTS---TDGS--ARIWKTEDGVA-------  188 (340)
Q Consensus       134 ---------g~i~~~d~~~~~~--~~~~~~~~--~~i~~~~~~~~~~~l~~~~---~d~~--v~iwd~~~~~~-------  188 (340)
                               ..|..+.+.+...  ...+....  ..+..+..++++++++...   .+..  +.+.|+.....       
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  278 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccc
Confidence                     2577777766432  12222222  2356677888999876432   2333  44445443211       


Q ss_pred             EEEeecCCCCceeeEEEccCCCcceEEEEEe--cCCcceEEEEECCCCcEE--ee-eeccCCCeeEEEECCCCCEEEEe-
Q 019482          189 WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQ--RGDKALLAVYDISTWNKI--GH-KRLLRKPASVLSISLDGKYLAMG-  262 (340)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~d~~i~i~d~~~~~~~--~~-~~~~~~~i~~~~~s~~~~~l~~~-  262 (340)
                      ...+..........+. + ++..++   +.+  .+.++.|...++......  .. +..+...+..-.++..+.+|+.. 
T Consensus       279 ~~~~~~~~~~~~~~~~-~-~~~~~~---~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~  353 (430)
T d1qfma1         279 WVKLIDNFEGEYDYVT-N-EGTVFT---FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY  353 (430)
T ss_dssp             CEEEECSSSSCEEEEE-E-ETTEEE---EEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred             eeEeecccccceEEEe-c-CCceee---cccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEE
Confidence            1112111222222221 2 233211   222  223567777777654321  12 22333444443444445566554 


Q ss_pred             eCCC--cEEEEeccCceEeecccccccccceeeEEEecCCe
Q 019482          263 SKDG--DICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR  301 (340)
Q Consensus       263 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  301 (340)
                      ..++  .|+++++.+++....... . ...+..+...++..
T Consensus       354 ~~~~~~~l~v~~~~~~~~~~~~~~-~-~~sv~~~~~~~~~~  392 (430)
T d1qfma1         354 LHDVKNTLQLHDLATGALLKIFPL-E-VGSVVGYSGQKKDT  392 (430)
T ss_dssp             EETTEEEEEEEETTTCCEEEEECC-C-SSEEEEEECCTTCS
T ss_pred             EcCCEeEEEEEECCCCcEEEecCC-C-CceEeeccCCCCCC
Confidence            3454  588899988776544322 2 23555555555543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.95  E-value=0.09  Score=44.70  Aligned_cols=81  Identities=12%  Similarity=0.019  Sum_probs=55.1

Q ss_pred             cceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeCCCcEEEEeccCceEeecccccccccceeeEEEecCCe-
Q 019482          223 KALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQR-  301 (340)
Q Consensus       223 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  301 (340)
                      .+.|.-+|+.+++.+-...... +...-.++..|.++++|+.||.++.+|.++|+.+-...... ...-.-+.+..+|+ 
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~-~~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS-GIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS-CCCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCC-CccccCEEEEECCEE
Confidence            3678889999998776655432 22222234467788899999999999999999997665433 22223367778885 


Q ss_pred             EEEE
Q 019482          302 VVLT  305 (340)
Q Consensus       302 ~l~~  305 (340)
                      |++.
T Consensus       543 Yv~i  546 (582)
T d1flga_         543 YLGV  546 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.81  E-value=0.11  Score=43.81  Aligned_cols=238  Identities=12%  Similarity=0.059  Sum_probs=132.1

Q ss_pred             CCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEcc------CCCcEEEEeCCCCceee
Q 019482           75 GDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGG------VDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        75 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~  148 (340)
                      +..++.+..++.+.-.|..+++.............   ..+...-.-.++ .++.+.      ..|.|.-+|.++++.+.
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~---~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKP---YSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSS---CBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccc---eeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEe
Confidence            44677778888888888888877665533211100   000000000123 333332      23679999999999876


Q ss_pred             ccccCc------------------------------cc-eeEEEecCCCCeEEEeeC-------------------CCeE
Q 019482          149 DEPKAH------------------------------KS-VLDMDFSLDSEFLATTST-------------------DGSA  178 (340)
Q Consensus       149 ~~~~~~------------------------------~~-i~~~~~~~~~~~l~~~~~-------------------d~~v  178 (340)
                      ++....                              .. -..+.+.+...++..+..                   ...|
T Consensus       193 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~si  272 (560)
T d1kv9a2         193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI  272 (560)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             eeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceee
Confidence            653210                              01 122456666555543321                   2357


Q ss_pred             EEEEccCCeeEEEeecCCCC--------ceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC------
Q 019482          179 RIWKTEDGVAWTFLTRNSDE--------KIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR------  244 (340)
Q Consensus       179 ~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------  244 (340)
                      .-.|+++++..-.++..+..        ...-+....+++...  .++....++.+.++|..+++.+.......      
T Consensus       273 vAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~--~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRK--VLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEE--EEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             EEecCCccceeEEEeccccccccccccceeeeeeeecCCceee--eeeecCccceEEEEecCCCcccccccccccccccc
Confidence            77788888887666533221        111122233443211  25678889999999999998764432211      


Q ss_pred             ------------------------------CCeeEEEECCCCCEEEEeeC------------------------------
Q 019482          245 ------------------------------KPASVLSISLDGKYLAMGSK------------------------------  264 (340)
Q Consensus       245 ------------------------------~~i~~~~~s~~~~~l~~~~~------------------------------  264 (340)
                                                    ..-...+++|+...+++...                              
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                                          00123456677666665332                              


Q ss_pred             ------CCcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          265 ------DGDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       265 ------dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                            .|.|.-||+.+++.+-.....   .+..+-...-.+.+++.|+.||.++.+|.+..+
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~---~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe  490 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCC---CCCCCceeEECCCEEEEECCCCcEEEEECCCCc
Confidence                  256788899888877654322   233333344456677788888888877776544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.78  E-value=0.079  Score=41.55  Aligned_cols=184  Identities=13%  Similarity=0.066  Sum_probs=99.1

Q ss_pred             eEEEEEecCCCeEEEcc------------CCCcEEEEeCCCCceeec---cccCc-----cceeEEEe--cCCCC-eEEE
Q 019482          115 QKCLSFSVDGSRFAAGG------------VDGHLRIMHWPSLRIILD---EPKAH-----KSVLDMDF--SLDSE-FLAT  171 (340)
Q Consensus       115 v~~~~~~~~~~~l~~~~------------~dg~i~~~d~~~~~~~~~---~~~~~-----~~i~~~~~--~~~~~-~l~~  171 (340)
                      ..++...|+|..+++++            ..|.|.++|+.+.+....   +.+..     -....+..  .+++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            34567777776555543            148899999876542211   11110     01233333  44565 3444


Q ss_pred             ee---CCCeEEEEEccCCee----EEEeecCCCCceeeEEEccCCCcceEEEEEec-----------------CCcceEE
Q 019482          172 TS---TDGSARIWKTEDGVA----WTFLTRNSDEKIELCRFSKDGTKPFLFCTVQR-----------------GDKALLA  227 (340)
Q Consensus       172 ~~---~d~~v~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----------------~~d~~i~  227 (340)
                      ..   ...+|.+|++.....    +.++........+++.+..++..     .++.                 ...+.+.
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~f-----y~Tnd~~~~~~~~~~~e~~~~~~~g~v~  191 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-----YATNDHYFIDPYLKSWEMHLGLAWSFVT  191 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-----EEEESCSCCSHHHHHHHHHTTCCCEEEE
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCE-----EEecCccCcChhhhhhhHhhcCCceeEE
Confidence            43   346788888764332    12233333345788888888863     2321                 1123444


Q ss_pred             EEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEe-eCCCcEEEEeccCceEeecccccccccceeeEEEec-CCeEEEE
Q 019482          228 VYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMG-SKDGDICVVDVKKMEINHWSKRLHLGTSIALVEFCP-TQRVVLT  305 (340)
Q Consensus       228 i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~  305 (340)
                      .||...  .. .....-...+.++++||+++|+++ +..++|+.|++.....+......+.....-.+.+.+ +|.+.+.
T Consensus       192 ~~~~~~--~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         192 YYSPND--VR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EECSSC--EE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EEcCCc--eE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            454433  22 222223457889999999887766 456789999987543322221222244567788876 4554444


Q ss_pred             E
Q 019482          306 A  306 (340)
Q Consensus       306 ~  306 (340)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.77  E-value=0.1  Score=42.72  Aligned_cols=61  Identities=10%  Similarity=0.139  Sum_probs=40.5

Q ss_pred             CCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecccc-CCCCCCCCCeEEEEEecC
Q 019482           63 EGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKK-MPPLQDAGPQKCLSFSVD  123 (340)
Q Consensus        63 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  123 (340)
                      -...++|+|.|+|+.|++--..|.|++++..++.......... ......++....++|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4578899999999988776557889998877665332111111 111223567889999995

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.68  E-value=0.095  Score=41.10  Aligned_cols=193  Identities=10%  Similarity=0.092  Sum_probs=111.3

Q ss_pred             cCCCeEEEccCCCcEEEEeCCCCceeeccccCccceeEEEec------CCCCeEEEee-CC---CeEEEEEccC-CeeEE
Q 019482          122 VDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDFS------LDSEFLATTS-TD---GSARIWKTED-GVAWT  190 (340)
Q Consensus       122 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~------~~~~~l~~~~-~d---~~v~iwd~~~-~~~~~  190 (340)
                      |+..+++....++-|.+||+. |+.+..+..  +.+..+..-      ....-++.++ ++   .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345566666666679999985 676665542  344444432      2222345554 32   3688888753 22333


Q ss_pred             EeecC------CCCceeeEEE--ccCCCcceEEEEEecCCcceEEEEECC---CCc----EEeeeeccCCCeeEEEECCC
Q 019482          191 FLTRN------SDEKIELCRF--SKDGTKPFLFCTVQRGDKALLAVYDIS---TWN----KIGHKRLLRKPASVLSISLD  255 (340)
Q Consensus       191 ~~~~~------~~~~v~~~~~--~~~~~~~~~~~~~~~~~d~~i~i~d~~---~~~----~~~~~~~~~~~i~~~~~s~~  255 (340)
                      .+...      ....++.+++  ++....++   ++....++.+..|.+.   .+.    .++.+. ....+..+.+.+.
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~---afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYY---AMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEE---EEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEE---EEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCC
Confidence            33211      1123667777  55544322   4556677888877663   332    233333 2456888999999


Q ss_pred             CCEEEEeeCCCcEEEEeccC-----ceEeecccccccccceeeEEEec--C--CeEEEEEecCCcEEEEEecCCC
Q 019482          256 GKYLAMGSKDGDICVVDVKK-----MEINHWSKRLHLGTSIALVEFCP--T--QRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       256 ~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~i~~~~~~~--~--~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      ...|+.+-++..|..+++..     ...+......+....+..|+.-.  +  |-+|+|.-.+++..||+...+.
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            99999998887776666542     22222221222345677887653  2  3455565568899999987654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.066  Score=42.52  Aligned_cols=141  Identities=9%  Similarity=-0.004  Sum_probs=83.0

Q ss_pred             CeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeecc--ccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCC
Q 019482           65 DPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLA--KKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWP  142 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~  142 (340)
                      ..+-++.++...++++|+.++ +.|.....-+.......  ........-..|..++|+.+  .|+.. .++.+..++..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~  113 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE  113 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence            356788888777888888886 77877543211000000  00000001235888999755  45544 45668888776


Q ss_pred             CCceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeec----CCCCceeeEEEccCCCc
Q 019482          143 SLRIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTR----NSDEKIELCRFSKDGTK  211 (340)
Q Consensus       143 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~  211 (340)
                      +............++..+.++|.  .++....++.+.++++..++.......    .-.+.+.++.|++.|++
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         114 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            54433333333456788888775  456666789999999988764332210    01245777888887776

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.43  E-value=0.12  Score=39.18  Aligned_cols=217  Identities=11%  Similarity=0.056  Sum_probs=122.7

Q ss_pred             CceEEEEeCCCCCCcccCCeeeEEEecCCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCC
Q 019482           35 SVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGP  114 (340)
Q Consensus        35 ~~i~i~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  114 (340)
                      ..+++++++.+.      ....+.   ...+|.--.|-. .+.|+..+... |+-|+++......+..... ..+ ....
T Consensus        83 ~~LQiFnletK~------klks~~---~~e~VvfWkWis-~~~L~lVT~ta-VYHW~~~g~s~P~k~fdR~-~~L-~~~Q  149 (327)
T d1utca2          83 KTLQIFNIEMKS------KMKAHT---MTDDVTFWKWIS-LNTVALVTDNA-VYHWSMEGESQPVKMFDRH-SSL-AGCQ  149 (327)
T ss_dssp             TEEEEEETTTTE------EEEEEE---CSSCCCEEEESS-SSEEEEECSSE-EEEEESSSSCCCEEEEECC-GGG-TTCE
T ss_pred             CeEEEEehhHhh------hhceEE---cCCCcEEEEecC-CCEEEEEcCCc-eEEEcccCCCCchhhhhhc-ccc-cCce
Confidence            358888887331      111222   245677778863 44666666554 9999996654333332221 112 2456


Q ss_pred             eEEEEEecCCCeEEEcc-------CCCcEEEEeCCCCceeeccccCccceeEEEecCCC---CeEEEee---CCCeEEEE
Q 019482          115 QKCLSFSVDGSRFAAGG-------VDGHLRIMHWPSLRIILDEPKAHKSVLDMDFSLDS---EFLATTS---TDGSARIW  181 (340)
Q Consensus       115 v~~~~~~~~~~~l~~~~-------~dg~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~---~d~~v~iw  181 (340)
                      |..-..+++.++++..+       -.|.+.+|..+.+. -+.+.+|......+...-+.   +.++.+.   ..+.++|-
T Consensus       150 IInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIi  228 (327)
T d1utca2         150 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII  228 (327)
T ss_dssp             EEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEE
Confidence            77777788888776543       23778999987543 33455554444333332211   2333332   23578888


Q ss_pred             EccCCe---e-----EEEeecC---CCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEE
Q 019482          182 KTEDGV---A-----WTFLTRN---SDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVL  250 (340)
Q Consensus       182 d~~~~~---~-----~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~  250 (340)
                      ++....   .     ...+...   ...-.-++..++....     +..-+.-|.|.+||+.++.++..-+....+|...
T Consensus       229 Eig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygi-----iyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         229 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV-----VFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  303 (327)
T ss_dssp             ECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTE-----EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCE-----EEEEecCcEEEEEEcccccEEEEeecCCCceEEe
Confidence            875421   1     1111111   1223445666665554     3444678899999999999988777777777655


Q ss_pred             EECCCCCEEEEeeCCCcEEE
Q 019482          251 SISLDGKYLAMGSKDGDICV  270 (340)
Q Consensus       251 ~~s~~~~~l~~~~~dg~i~i  270 (340)
                      +-..+..=++....+|.|..
T Consensus       304 a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         304 APHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEETTTTEEEEEETTSEEEE
T ss_pred             ccCCCCceEEEECCCCeEEE
Confidence            55555445555556666543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.38  E-value=0.18  Score=40.85  Aligned_cols=206  Identities=13%  Similarity=-0.045  Sum_probs=103.8

Q ss_pred             eEEEEcCCCCeEEEEecC----------------CCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEc
Q 019482           67 MTIAVNPSGDDFVCSTTN----------------GGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAG  130 (340)
Q Consensus        67 ~~~~~~~~~~~l~~~~~d----------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  130 (340)
                      ..++|.+|++.|+....+                ..+..+.+.+............   .....+..+..++++++++..
T Consensus       174 ~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~---d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP---DEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT---TCTTCEEEEEECTTSCEEEEE
T ss_pred             cceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccc---cCCceEEeeeccCCcceeeEE
Confidence            568999999988755432                2467777765543222222111   122345677788999987643


Q ss_pred             c---CCCc--EEEEeCCCCcee--------eccccCccceeEEEecCCCCeEEEeeC---CCeEEEEEccCCee--EEEe
Q 019482          131 G---VDGH--LRIMHWPSLRII--------LDEPKAHKSVLDMDFSLDSEFLATTST---DGSARIWKTEDGVA--WTFL  192 (340)
Q Consensus       131 ~---~dg~--i~~~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~v~iwd~~~~~~--~~~~  192 (340)
                      .   .+..  +.+.++......        ...........-+ -+.++.+++....   ++.|...++.....  ...+
T Consensus       251 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~v  329 (430)
T d1qfma1         251 IREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL  329 (430)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEE
T ss_pred             eeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEE
Confidence            2   2333  344454322110        1111111122222 2223334443332   35666667665432  2333


Q ss_pred             ecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC----CCcE
Q 019482          193 TRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK----DGDI  268 (340)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i  268 (340)
                      ...+...+..-.+...+.++++  ...-..-..|++++..++..........+.+..+...++...+...-.    =.++
T Consensus       330 i~~~~~~~~~~~~~~~~~~lvl--~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~  407 (430)
T d1qfma1         330 VPEHEKDVLEWVACVRSNFLVL--CYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGII  407 (430)
T ss_dssp             ECCCSSCEEEEEEEETTTEEEE--EEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEE
T ss_pred             ecccCcceeeeEEEEECCEEEE--EEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeE
Confidence            3333333443344444444221  223344567999999988765444444455655555565554443322    2678


Q ss_pred             EEEeccCceE
Q 019482          269 CVVDVKKMEI  278 (340)
Q Consensus       269 ~i~d~~~~~~  278 (340)
                      .-+|+.+++.
T Consensus       408 y~~Dl~t~~~  417 (430)
T d1qfma1         408 YHCDLTKEEL  417 (430)
T ss_dssp             EEEETTSSSC
T ss_pred             EEEECCCCCc
Confidence            8899888754

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.28  E-value=0.26  Score=41.63  Aligned_cols=235  Identities=10%  Similarity=0.050  Sum_probs=126.0

Q ss_pred             eEEEEecCCCEEEEEecCceeeeeeccccCCC--CCCCCCeEEEEEecCCCeEEEcc------CCCcEEEEeCCCCceee
Q 019482           77 DFVCSTTNGGCKLFEVYGGATDINLLAKKMPP--LQDAGPQKCLSFSVDGSRFAAGG------VDGHLRIMHWPSLRIIL  148 (340)
Q Consensus        77 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~~d~~~~~~~~  148 (340)
                      .++.++.++.+.-.|.++++............  ......  .+.+  ++ .++++.      ..|.|+-+|.++|+.+.
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~--p~v~--~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W  204 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA--PRVF--KG-KVIIGNGGAEYGVRGYITAYDAETGERKW  204 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC--CEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             cEEEEecccceeeeccccccceecccCccCCcceEEeecc--eEEE--ec-cEEEeeccccccccceEEEEecCCcccee
Confidence            56666777777777877777655442211100  000000  0111  23 444443      24689999999998876


Q ss_pred             ccccCc-------------------------------cce-eEEEecCCCCeEEEeeC-------------------CCe
Q 019482          149 DEPKAH-------------------------------KSV-LDMDFSLDSEFLATTST-------------------DGS  177 (340)
Q Consensus       149 ~~~~~~-------------------------------~~i-~~~~~~~~~~~l~~~~~-------------------d~~  177 (340)
                      ++....                               ..+ ....+.++...+..+..                   ...
T Consensus       205 ~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~s  284 (573)
T d1kb0a2         205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (573)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             eeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccce
Confidence            542211                               011 12445555554443221                   124


Q ss_pred             EEEEEccCCeeEEEeecCCC--------CceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeeeccC-----
Q 019482          178 ARIWKTEDGVAWTFLTRNSD--------EKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKRLLR-----  244 (340)
Q Consensus       178 v~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----  244 (340)
                      |.-.|.++++..-..+..+.        .+........++...  ..++....++.+.++|..+++.+.......     
T Consensus       285 vvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~--~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~  362 (573)
T d1kb0a2         285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPR--KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (573)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEE--EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEecccchheeecccccCcccccccccceeeecceecCCCce--eeeeeccccceeEEecccccccccccccccccccc
Confidence            66677777777655543221        111122222333321  226778889999999999998764433211     


Q ss_pred             ------------------------------CCeeEEEECCCCCEEEEeeCC-----------------------------
Q 019482          245 ------------------------------KPASVLSISLDGKYLAMGSKD-----------------------------  265 (340)
Q Consensus       245 ------------------------------~~i~~~~~s~~~~~l~~~~~d-----------------------------  265 (340)
                                                    ..-..++++|+..++++...+                             
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  442 (573)
T d1kb0a2         363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (573)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccc
Confidence                                          011234677776666653222                             


Q ss_pred             --------------CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          266 --------------GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       266 --------------g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                                    |.|.-||+.+++.+-.....   .+..+=..+-.+.++++|+.||.++.+|....+
T Consensus       443 ~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~---~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe  509 (573)
T d1kb0a2         443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (573)
T ss_dssp             CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccccCCCCCCCcccEEEeCCCCCceEeeecCC---CCCCCceEEEcCCEEEEECCCCeEEEEECCCCc
Confidence                          35677788887776544321   223222344467778888889888887776554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.83  E-value=0.29  Score=38.19  Aligned_cols=192  Identities=13%  Similarity=0.018  Sum_probs=105.1

Q ss_pred             CeeEEEEcCCCCeEEEEec------------CCCEEEEEecCceeeeeeccccC-CCCCCCCCeEEEEE--ecCCC-eEE
Q 019482           65 DPMTIAVNPSGDDFVCSTT------------NGGCKLFEVYGGATDINLLAKKM-PPLQDAGPQKCLSF--SVDGS-RFA  128 (340)
Q Consensus        65 ~v~~~~~~~~~~~l~~~~~------------d~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~--~~~~~-~l~  128 (340)
                      ..-.++..|+|..+++++.            .|.|.++|+.+............ ......-....+.+  .+++. +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3556888899887766532            37899999876543322211110 00001112344544  34555 344


Q ss_pred             Ec---cCCCcEEEEeCCCCceeec----ccc-CccceeEEEecCCCCeEEEeeC---------------CCeEEEEEccC
Q 019482          129 AG---GVDGHLRIMHWPSLRIILD----EPK-AHKSVLDMDFSLDSEFLATTST---------------DGSARIWKTED  185 (340)
Q Consensus       129 ~~---~~dg~i~~~d~~~~~~~~~----~~~-~~~~i~~~~~~~~~~~l~~~~~---------------d~~v~iwd~~~  185 (340)
                      +.   ....+|.+|++........    +.. .....+++.+..++.+++|-..               -....+|....
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            43   2456788888754332111    111 1125788999888988887311               12334444444


Q ss_pred             CeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeee--eccCCCeeEEEECCC-CCEEEEe
Q 019482          186 GVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHK--RLLRKPASVLSISLD-GKYLAMG  262 (340)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~s~~-~~~l~~~  262 (340)
                      ++...... . -...+.++++|+++.+    .++....+.|+.|++.....+...  .......-.+.+.++ |.+.+.+
T Consensus       196 ~~~~~~~~-~-l~~pNGI~~s~d~~~l----yVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         196 NDVRVVAE-G-FDFANGINISPDGKYV----YIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SCEEEEEE-E-ESSEEEEEECTTSSEE----EEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CceEEEcC-C-CCccceeEECCCCCEE----EEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            44322222 2 2357899999999864    456667888999998754432221  123345567888764 4444443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.60  E-value=0.45  Score=38.75  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=38.1

Q ss_pred             cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEee-------cCCCCceeeEEEccC
Q 019482          155 KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLT-------RNSDEKIELCRFSKD  208 (340)
Q Consensus       155 ~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~  208 (340)
                      ...++|+|.||++++++--..|.|++++..+++......       ...+.....++|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            456799999999988776557999999887765432221       112245678999996

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.35  E-value=0.45  Score=37.16  Aligned_cols=146  Identities=15%  Similarity=0.134  Sum_probs=85.7

Q ss_pred             CCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEcc----CCCcceEEEEEecCC--cceEEEEECCC-CcE
Q 019482          164 LDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSK----DGTKPFLFCTVQRGD--KALLAVYDIST-WNK  236 (340)
Q Consensus       164 ~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~--d~~i~i~d~~~-~~~  236 (340)
                      |+..+++....++-|++||++ |+.+..+.   .+.+..+..-.    +++... +.+++...  ...|.+|.+.. ...
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~d-i~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVD-IAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEE-EEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceE-EEEEeCCcCcceeEEEEEecCcccc
Confidence            445567777777779999985 77777664   23456555442    233211 22333333  24677887753 222


Q ss_pred             Eeeeecc-------CCCeeEEEE--CCC-CC-EEEEeeCCCcEEEEeccC---c----eEeecccccccccceeeEEEec
Q 019482          237 IGHKRLL-------RKPASVLSI--SLD-GK-YLAMGSKDGDICVVDVKK---M----EINHWSKRLHLGTSIALVEFCP  298 (340)
Q Consensus       237 ~~~~~~~-------~~~i~~~~~--s~~-~~-~l~~~~~dg~i~i~d~~~---~----~~~~~~~~~~~~~~i~~~~~~~  298 (340)
                      +..+...       ...+..+++  +|. |. ++++...+|.+..|.+..   +    +.++.+.   ....+.+|.+.+
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~---~~~q~EGCVvDd  189 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK---MNSQTEGMAADD  189 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE---CSSCEEEEEEET
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC---CCCccceEEEeC
Confidence            3222221       123556666  664 44 556667789998887632   2    2233332   245789999999


Q ss_pred             CCeEEEEEecCCcEEEEEecC
Q 019482          299 TQRVVLTASKEWGAMITKLTV  319 (340)
Q Consensus       299 ~~~~l~~~~~dg~i~iw~~~~  319 (340)
                      ....|..+-++.  .+|.+..
T Consensus       190 e~~~LyisEE~~--Giw~~~a  208 (353)
T d1h6la_         190 EYGSLYIAEEDE--AIWKFSA  208 (353)
T ss_dssp             TTTEEEEEETTT--EEEEEES
T ss_pred             CCCcEEEecCcc--ceEEEEe
Confidence            988899887775  4566654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.44  Score=35.70  Aligned_cols=53  Identities=15%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             ceEEEEECCCCcEEeeeeccCCCe-eEEEECCCCCEEEEeeCCC-----cEEEEeccCce
Q 019482          224 ALLAVYDISTWNKIGHKRLLRKPA-SVLSISLDGKYLAMGSKDG-----DICVVDVKKME  277 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~  277 (340)
                      .....+|..+.+............ .+++ ..++++++.|+.++     .+.+||+.+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         211 NSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             cceeeeeecceeeecccCccCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            356778877665432211111111 1222 23677888876554     37788887754

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.02  E-value=0.84  Score=38.49  Aligned_cols=53  Identities=9%  Similarity=-0.028  Sum_probs=35.9

Q ss_pred             CcEEEEeccCceEeecccccccccceeeEEEecCCeEEEEEecCCcEEEEEecCCC
Q 019482          266 GDICVVDVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTASKEWGAMITKLTVPA  321 (340)
Q Consensus       266 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~  321 (340)
                      |.|.-+|+.+++..-.....   .++.+-..+..+.++++|+.||.++.+|.+..+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence            56888888888877654332   244433345567788889999988887776554

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.65  E-value=0.47  Score=33.79  Aligned_cols=224  Identities=14%  Similarity=0.061  Sum_probs=117.3

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCC--CeEEE------ccCCCcEEEEeCCCCc
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDG--SRFAA------GGVDGHLRIMHWPSLR  145 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~------~~~dg~i~~~d~~~~~  145 (340)
                      +.+.++.+...|.+.++-+..++..... .         .+|... ..|..  .++..      |-+-..|.+-++....
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt-k---------ePI~~~-~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~G   93 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN-R---------EPINSV-LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPG   93 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC-S---------SCCSEE-CEECTTBSEEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe-c---------ccccCc-CCCccCcceEEEEeehhcCcceeeEEEEccCCCC
Confidence            3447777878898999988877643221 1         122111 11111  11211      1222345555554222


Q ss_pred             eeeccccCc-cceeEEEecCCCCeEEEeeCCCeEEEEEccCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcc
Q 019482          146 IILDEPKAH-KSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKA  224 (340)
Q Consensus       146 ~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~  224 (340)
                      .-..+.... -.|.+++.. +.+...+|+......+|-++.|+...-.....-+-|+.+    .++++.-+ .+.++...
T Consensus        94 EE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~-g~~~g~~~  167 (313)
T d2hu7a1          94 EEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGL-GFFGGGRV  167 (313)
T ss_dssp             CEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEE-EEEETTEE
T ss_pred             eeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEE-eeecCCcc
Confidence            222232222 356666654 345667788778899999988876443322221223322    23332111 22233333


Q ss_pred             eEEEEECCCCcEEeeeeccCCCeeEEEECCCCCEEEEeeC---CCcEEEEeccCceEeeccccc-----ccccceeeEEE
Q 019482          225 LLAVYDISTWNKIGHKRLLRKPASVLSISLDGKYLAMGSK---DGDICVVDVKKMEINHWSKRL-----HLGTSIALVEF  296 (340)
Q Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~-----~~~~~i~~~~~  296 (340)
                      ...+=|+.++.. ..+...++.++.....++.+. +++-+   .....-+|+++++..+.-...     .....|..+-+
T Consensus       168 sfF~adl~SG~l-ri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y  245 (313)
T d2hu7a1         168 SLFTSNLSSGGL-RVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY  245 (313)
T ss_dssp             EEEEEETTTEEE-EEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred             eEEEEecccCCE-EEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeee
Confidence            455556655543 344555566777777776665 43321   122335588876654332111     11235667778


Q ss_pred             ecCCeEEEEEecCCcEEEEE
Q 019482          297 CPTQRVVLTASKEWGAMITK  316 (340)
Q Consensus       297 ~~~~~~l~~~~~dg~i~iw~  316 (340)
                      .|++++++.+-.||.-+++.
T Consensus       246 ~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         246 LPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             CTTSCEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEecCCchheee
Confidence            99999989999999988885

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.55  E-value=0.81  Score=36.08  Aligned_cols=179  Identities=11%  Similarity=-0.034  Sum_probs=98.7

Q ss_pred             CCeEEEEEecCCCeEEEccCCCcEEEEeCCCC---------ceeeccccCccceeEEEecCCCCeEEEeeCCCeEEEEEc
Q 019482          113 GPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSL---------RIILDEPKAHKSVLDMDFSLDSEFLATTSTDGSARIWKT  183 (340)
Q Consensus       113 ~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~  183 (340)
                      ....-++.++...++++|+.++ +.|..+..-         .........-..|..++|+.+  .++.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEe
Confidence            3456788888777888877765 666654211         000001011125888999744  45554 3567888887


Q ss_pred             cCCeeEEEeecCCCCceeeEEEccCCCcceEEEEEecCCcceEEEEECCCCcEEeeee-----ccCCCeeEEEECCCCCE
Q 019482          184 EDGVAWTFLTRNSDEKIELCRFSKDGTKPFLFCTVQRGDKALLAVYDISTWNKIGHKR-----LLRKPASVLSISLDGKY  258 (340)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~  258 (340)
                      ..-........ ...++..+.+.|..       ++....++.+.++++..++......     .-.....++.|++.|+.
T Consensus       113 ~~l~~~~~~~~-~~~~~~~~~~~p~~-------~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         113 EELSEFRTVTS-FEKPVFQLKNVNNT-------LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             SSTTCEEEEEE-CSSCEEEEEECSSE-------EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEE
T ss_pred             ecccccccccc-ccccccceecCCce-------eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEE
Confidence            65433333321 23457788887753       2334457788899998876432211     12356777888888887


Q ss_pred             EEEeeCCCcEEEE-eccCceEeecccccccccceeeEEEecCCeEEEEE
Q 019482          259 LAMGSKDGDICVV-DVKKMEINHWSKRLHLGTSIALVEFCPTQRVVLTA  306 (340)
Q Consensus       259 l~~~~~dg~i~i~-d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  306 (340)
                      ++++..++ ..+- ++.....+... ... ...+.++.|-.+..++++-
T Consensus       185 ~v~~~g~~-~q~k~~i~~~~~~~~p-~~~-~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         185 SFAWRNGE-MEKQFEFSLPSELEEL-PVE-EYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEETTE-EEEEEEECCCHHHHTS-CTT-TSEEEEEEESSSSEEEEEE
T ss_pred             EEEeCCCc-eeeccCCCCccccCCC-cCC-CcceeEEEEecCceEEEEE
Confidence            77764322 2211 11111110000 011 2468899998777776655

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.68  Score=34.57  Aligned_cols=93  Identities=11%  Similarity=-0.002  Sum_probs=45.5

Q ss_pred             ceEEEEECCCCcEEeeeeccC-CCeeEEEECCCCCEEEEeeCC-----CcEEEEeccCceEeecccccccccceeeEEEe
Q 019482          224 ALLAVYDISTWNKIGHKRLLR-KPASVLSISLDGKYLAMGSKD-----GDICVVDVKKMEINHWSKRLHLGTSIALVEFC  297 (340)
Q Consensus       224 ~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~  297 (340)
                      ..+..||..+.+-........ ....+... .+++.++.|+.+     .....+|..+.+......... ...-.+++ .
T Consensus       164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~r~~~~~~-~  240 (288)
T d1zgka1         164 NSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGIT-V  240 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-E
T ss_pred             ceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccCccC-cccceEEE-E
Confidence            457788887655322111111 11122222 245566666544     356778887766544322111 11112233 3


Q ss_pred             cCCeEEEEEecCCc-----EEEEEecC
Q 019482          298 PTQRVVLTASKEWG-----AMITKLTV  319 (340)
Q Consensus       298 ~~~~~l~~~~~dg~-----i~iw~~~~  319 (340)
                      .++++++.|+.++.     +.+||+..
T Consensus       241 ~~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         241 HQGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCEEEEEecCCCCeecceEEEEECCC
Confidence            47888888876643     55565543

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.24  E-value=3  Score=31.88  Aligned_cols=110  Identities=11%  Similarity=0.025  Sum_probs=67.2

Q ss_pred             CCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCCCCCCeEEEEEecCCCeEEEccCCCcEEEEeCCCCcee------
Q 019482           74 SGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRII------  147 (340)
Q Consensus        74 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~------  147 (340)
                      ...+|+..+..|.++..++........-.......+.....+..+....+...++.++..|.+..++...-...      
T Consensus       105 ~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~~vr~~gr~a~G  184 (323)
T d1wp5a_         105 LNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG  184 (323)
T ss_dssp             SSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC
T ss_pred             cceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEEEecceeeEeecccccccCccccc
Confidence            35689999999999999886543211111111122335567778888777778888899999998886532211      


Q ss_pred             ---eccccCccceeEE-EecCCCCeEEEeeCCCeEEEEEcc
Q 019482          148 ---LDEPKAHKSVLDM-DFSLDSEFLATTSTDGSARIWKTE  184 (340)
Q Consensus       148 ---~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~~v~iwd~~  184 (340)
                         ..+. ..+.+... ...+++..++..+..|..+.-.+.
T Consensus       185 V~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~  224 (323)
T d1wp5a_         185 VKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLT  224 (323)
T ss_dssp             EECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred             ccccccc-cccccchhhhccccccceeeeeeeheeecccch
Confidence               1121 12234433 344456677777777877776654

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=86.13  E-value=3.9  Score=28.35  Aligned_cols=142  Identities=12%  Similarity=-0.038  Sum_probs=71.4

Q ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCEEEEEecCceeeeeeccccCCCCC--CCCCeEEEEEecCCCeEEEccCCCcEEEE
Q 019482           62 SEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQ--DAGPQKCLSFSVDGSRFAAGGVDGHLRIM  139 (340)
Q Consensus        62 h~~~v~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~  139 (340)
                      .-..+.-++|||+|++.++-..  .++.=.+.+.....-+..  ...+.  .=+...-+.|.|.|- |.+.+ ++.++-=
T Consensus        38 g~~n~~~i~fsP~G~LyaVr~~--~lY~Gp~~s~~nq~wf~~--atrIG~ggWn~FkflffdP~G~-LyaVt-~~~LYr~  111 (235)
T d1tl2a_          38 GWSNFKFLFLSPGGELYGVLND--KIYKGTPPTHDNDNWMGR--AKKIGNGGWNQFQFLFFDPNGY-LYAVS-KDKLYKA  111 (235)
T ss_dssp             SCTTCSEEEECTTSCEEEEETT--EEEEESCCCSTTCCHHHH--CEEEECSCGGGCSEEEECTTSC-EEEEE-TTEEEEE
T ss_pred             cccceeEEEECCCCcEEEEECC--eEEECCCCCcchHHHHHh--hhhcccCcccceEEEEECCCce-EEEec-CcceecC
Confidence            3456888999999987766432  233333222111000000  00000  112345688999995 44444 4544333


Q ss_pred             eCCCCceee-----ccccC--ccceeEEEecCCCCeEEEeeCCCeEEEEEccCCee------EEEeecCCCCceeeEEEc
Q 019482          140 HWPSLRIIL-----DEPKA--HKSVLDMDFSLDSEFLATTSTDGSARIWKTEDGVA------WTFLTRNSDEKIELCRFS  206 (340)
Q Consensus       140 d~~~~~~~~-----~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~v~iwd~~~~~~------~~~~~~~~~~~v~~~~~~  206 (340)
                      ...+.++..     ...+.  -+.+..+-|.|+|.+.++.+ | .++-+....+..      -..+...+-....-+.|+
T Consensus       112 ~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~-~-~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs  189 (235)
T d1tl2a_         112 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHG-Q-QFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS  189 (235)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEET-T-EEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred             CcCcccchhhhhhhhhhccCCcCceeEEEECCCceEEEEEC-C-cEEEcCCCCCCCchhhhhhhhhccCcccCceEEEEC
Confidence            333332211     01111  23577889999998776643 3 466555433211      112332333456789999


Q ss_pred             cCCCc
Q 019482          207 KDGTK  211 (340)
Q Consensus       207 ~~~~~  211 (340)
                      |+|..
T Consensus       190 ~dG~L  194 (235)
T d1tl2a_         190 SVGTL  194 (235)
T ss_dssp             TTSCE
T ss_pred             CCCcE
Confidence            99983