Citrus Sinensis ID: 019483

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
METAGEWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEEVAEAEQAKRNKVVVTFDLVGRKVSTFCRIATISSYIFSSVIV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccEEEccccccccEEccccccccccccccccHHccccccEEEEEEccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccEEEEEcccccEEEEEEEEEEc
Coil and Loop (DISEMBL)
METAGEWLEKALVDLCKRIESLDLDGEVISGLVSYCefaqpldakeyldniigqeVGKSVIEEYLRrrgltdicssttnvptsklqayvkprsdeglasgtkkpsktpkeftgtghqaELKKVMvpsyqvepkkdavsshnenlaessesrtmnrgnqsnnrkkKAGKVISLAEAAkgsivfqqgkpcscqarQHRLISNclscgkivceqegegpcqfcGALVLkegstyagleegfaplsDAEAAAEAYTKRLVDYdrnaaarttviddqsdyyeiegnswlSKEEKELIKKKQEEVAEAEQAKRNKVVVTFDLVGRKVSTFCRIATISSYIFSSVIV
Flexible Loop (DISEMBL)
METAGEWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGltdicssttnvptsklqayvkprsdeglasgtkkpsktpkeftgtghqaelKKVMVPSYQVEPKKDAVSshnenlaessesrtmnrgnqsnnrkkkAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYTKRLvdydrnaaarttviddqsdyYEIEGNSWLSKEEKELIKKKQEEVAeaeqakrnkvvvtfdlvgrkvstfcriatissyifssviv
Low Complexity Region (SEG)
METAGEWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFAPLSDaeaaaeaYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSkeekelikkkqeevaeaeqakRNKVVVTFDLVGRKVSTFCRIATISSYIFSSVIV
Disordered region (IsUnstruct)
*****EWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTDICSSTT*******************************************************************************************ISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWL***********************NKVVVTFDLVGRKVSTFCRIATISSYIFSSV**
Disordered Region (DISOPRED)
********EKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVIEEYL****************************************************************************************************************************CQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV*****************************************TTVIDDQSDYYEIEGNSWLSKE*************************TFDLVGRKVS******************
Disordered Region (DISEMBL)
METAGEWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTDICSSTTNVPTSKLQAYV************************TGHQAELKKVMVPSYQV*************************************KVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEK****************KRNKVVVTFDLVGRKVSTFCRIATISSYIFSSVIV
Disordered Region (DISPRO)
****GEWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVIEEYLRRR***************************************************************************************************KVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEEVAEAEQAKRNKVVVTFDLVGRKVSTFCRIATISSYIFSSVIV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METAGEWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFAPxxxxxxxxxxxxxxxxxxxxxAAARTTVIDDQSDYYEIEGNSWLxxxxxxxxxxxxxxxxxxxxxxxxKVVVTFDLVGRKVSTFCRIATISSYIFSSVIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q9QXN3	581	Activating signal cointeg	yes	no	0.497	0.290	0.339	4e-28
Q15650	581	Activating signal cointeg	yes	no	0.520	0.304	0.350	7e-26
O13855	455	Uncharacterized protein C	yes	no	0.305	0.228	0.281	1e-09

>sp|Q9QXN3|TRIP4_MOUSE Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=2

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 34/203 (16%)

Query: 153 MNRGNQSNNRKKKAGKVISLAE---AAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVC 209
           + +  +SNN  KK  + ++L       K +++     PC C  ++H+LI+NCL CG+IVC
Sbjct: 133 LAKAQESNNSVKKKTRFVNLYTREGQDKLAVLLPGRHPCDCLGQKHKLINNCLVCGRIVC 192

Query: 210 EQEGEGPCQFCGALV----------------------LKEGSTYAG---------LEEGF 238
           EQEG GPC FCG+LV                      L  G+  +G         L    
Sbjct: 193 EQEGSGPCLFCGSLVCTNEEQDILQRDSNKSQKLLKKLMSGAETSGKVDVSTKDLLPHQE 252

Query: 239 APLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEE 298
           + +      A  + ++L+++DR +  RT VIDD+SDY+  + N WLSK E+E+++K++EE
Sbjct: 253 SRMKSGLEKAIKHKEKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKVEREMLQKREEE 312

Query: 299 VAEAEQAKRNKVVVTFDLVGRKV 321
           + E   A R    VT D  GRK+
Sbjct: 313 LRELRHASRLSKKVTIDFAGRKI 335

Transcription coactivator of nuclear receptors which functions in conjunction with CBP-p300 and SRC-1 and may play an important role in establishing distinct coactivator complexes under different cellular conditions. Plays a pivotal role in the transactivation of NF-kappa-B, SRF and AP1. Acts as a mediator of transrepression between nuclear receptor and either AP1 or NF-kappa-B (By similarity). Plays a role in androgen receptor transactivation and testicular function.
Mus musculus (taxid: 10090)

>sp|Q15650|TRIP4_HUMAN Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 108/211 (51%), Gaps = 34/211 (16%)

Query: 145 AESSESRTMNRGNQSNNRKKKAGKVISL--AEAAKGSIVFQQGK-PCSCQARQHRLISNC 201
           AE      + +  +++N  KK  K ++L   E      V   G+ PC C  ++H+LI+NC
Sbjct: 125 AEVKTPFDLAKAQENSNSVKKKTKFVNLYTREGQDRLAVLLPGRHPCDCLGQKHKLINNC 184

Query: 202 LSCGKIVCEQEGEGPCQFCGALV--------LKEGST---------YAGLEE-GFAPLSD 243
           L CG+IVCEQEG GPC FCG LV        L+  S           +G+E  G   +S 
Sbjct: 185 LICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQRDSNKSQKLLKKLMSGVENSGKVDIST 244

Query: 244 AEA-------------AAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKE 290
            +               A  +  +L+++DR +  RT VIDD+SDY+  + N WLSK E+E
Sbjct: 245 KDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERE 304

Query: 291 LIKKKQEEVAEAEQAKRNKVVVTFDLVGRKV 321
            ++K++EE+ E   A R    VT D  GRK+
Sbjct: 305 TLQKREEELRELRHASRLSKKVTIDFAGRKI 335

Transcription coactivator of nuclear receptors which functions in conjunction with CBP-p300 and SRC-1 and may play an important role in establishing distinct coactivator complexes under different cellular conditions. Plays a pivotal role in the transactivation of NF-kappa-B, SRF and AP1. Acts as a mediator of transrepression between nuclear receptor and either AP1 or NF-kappa-B. Plays a role in androgen receptor transactivation and in testicular function.

Homo sapiens (taxid: 9606)

>sp|O13855|YEX1_SCHPO Uncharacterized protein C1A6.01c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1A6.01c PE=1 SV=3

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 45/149 (30%)

Query: 188 CSCQARQHRL---ISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEE-------- 236
           C+CQ R+H L     NCL+CGKI+C  EG GPC FC   V+ +      ++E        
Sbjct: 195 CNCQGRKHPLNEAAPNCLNCGKIICIVEGIGPCTFCDNPVISKAQQLELIQELKHEGSRL 254

Query: 237 -----------------GFAPLSDA-------------EAAAEAYTKR--LVDYDRNAAA 264
                             F  L ++             + A EA  ++  L+++DR +A 
Sbjct: 255 KQAANQKRKSKTVSSKNNFQRLQNSSLHSIFLDPKQLEQKAQEAEERKNVLLNFDRTSAQ 314

Query: 265 RTTVIDDQSDY--YEIEGNSWLSKEEKEL 291
           RT +ID+ +D+    +  ++W S  EK L
Sbjct: 315 RTRIIDEAADFDPTSLASDTWASPAEKAL 343

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
449439264	398	PREDICTED: uncharacterized protein LOC10	0.908	0.776	0.705	1e-123
255541013	413	Activating signal cointegrator, putative	0.908	0.748	0.708	1e-122
224119078	389	predicted protein [Populus trichocarpa]	0.888	0.776	0.686	1e-117
225456751	418	PREDICTED: activating signal cointegrato	0.879	0.715	0.686	1e-116
356562832	431	PREDICTED: activating signal cointegrato	0.902	0.712	0.708	1e-114
388508370	433	unknown [Medicago truncatula]	0.905	0.711	0.709	1e-112
15228204	408	transcription regulator/ zinc ion bindin	0.855	0.713	0.643	1e-111
297815942	408	transcription regulator/ zinc ion bindin	0.855	0.713	0.656	1e-109
449524918	277	PREDICTED: uncharacterized LOC101216786,	0.805	0.989	0.7	1e-106
357477563	418	Activating signal cointegrator [Medicago	0.858	0.698	0.673	1e-105

>gi|449439264|ref|XP_004137406.1| PREDICTED: uncharacterized protein LOC101216786 [Cucumis sativus]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/323 (70%), Positives = 267/323 (82%), Gaps = 14/323 (4%)

Query: 1   METAGEWLEKALVDLCKRIES-LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKS 59
           M T+G+WLEKAL DLCK++E+   LD ++ISGLVSYCE AQP DAKEYLDNIIGQEVGKS
Sbjct: 1   MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDNIIGQEVGKS 60

Query: 60  VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAE 119
           VI EYLR RG +D+CS T +VPTS L  YVKP S E    G+KKP KTPK  +       
Sbjct: 61  VINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEVSFGGSKKPVKTPKTIS------- 113

Query: 120 LKKVMVPSYQVEPKKDAVSSHNEN-LAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKG 178
                + S ++EPKK   SS+ E+ ++  + + +  +GNQS++RKKKA KV+SLAEAAKG
Sbjct: 114 -----ISSKEIEPKKATTSSNVESQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAKG 168

Query: 179 SIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGF 238
           SIVFQQGKPCSCQAR+HRL+SNCLSCGKIVCEQEGEGPC FCG+LVL+EGSTYAG++EGF
Sbjct: 169 SIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEGF 228

Query: 239 APLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEE 298
            PLSDAEAAAEAY KRLV+YDRN+AART+VIDDQSDYY+IEGNSWLS EEKEL+KKKQEE
Sbjct: 229 TPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNSWLSNEEKELLKKKQEE 288

Query: 299 VAEAEQAKRNKVVVTFDLVGRKV 321
           + EAE+AKRNKVVVTFDLVGRKV
Sbjct: 289 IEEAERAKRNKVVVTFDLVGRKV 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541013|ref|XP_002511571.1| Activating signal cointegrator, putative [Ricinus communis] gi|223550686|gb|EEF52173.1| Activating signal cointegrator, putative [Ricinus communis]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/322 (70%), Positives = 259/322 (80%), Gaps = 13/322 (4%)

Query: 1   METAGEWLEKALVDLCKRIES-LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKS 59
           METAG+WLE AL+DLCKRIE+ LDLD E+ISGLVSYCE AQPLDAKEYLDNIIGQE  KS
Sbjct: 1   METAGQWLENALLDLCKRIETGLDLDREIISGLVSYCELAQPLDAKEYLDNIIGQEAVKS 60

Query: 60  VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAE 119
           V EEYLRRRG +D  SS   V TSK   YVKP +D G   GTKKP K+PK+         
Sbjct: 61  VTEEYLRRRGYSDPGSSIAAVQTSKFHTYVKPSADNGSVGGTKKPVKSPKD--------- 111

Query: 120 LKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKGS 179
               +VPSY  EPKK+  S+      +   S +  +G Q N++KKK GKV+SLAEAAKGS
Sbjct: 112 ---TLVPSYLAEPKKNNSSTSTNQGNKVEASGSSQKGIQGNSKKKKTGKVVSLAEAAKGS 168

Query: 180 IVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFA 239
           IVFQQGKPCSCQAR+HR +SNCLSCGKIVCEQEGEGPC FCGALVLKEGS+YAGLE    
Sbjct: 169 IVFQQGKPCSCQARRHRPVSNCLSCGKIVCEQEGEGPCSFCGALVLKEGSSYAGLEGSLE 228

Query: 240 PLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEEV 299
           P+SDAEAAAEA+ KRLV+YDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKEL+++KQ+E+
Sbjct: 229 PISDAEAAAEAFAKRLVEYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELLRRKQKEI 288

Query: 300 AEAEQAKRNKVVVTFDLVGRKV 321
            EAE+AKRN+V+VTFDLVGRKV
Sbjct: 289 EEAEKAKRNRVIVTFDLVGRKV 310

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119078|ref|XP_002317980.1| predicted protein [Populus trichocarpa] gi|222858653|gb|EEE96200.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/322 (68%), Positives = 250/322 (77%), Gaps = 20/322 (6%)

Query: 2   ETAGEWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKSVI 61
           E+AG+WLEK LVDL      LDLD ++ISGLVSYCE AQPLDAKEYL NIIGQE  KSVI
Sbjct: 6   ESAGKWLEKTLVDL-----GLDLDRDIISGLVSYCELAQPLDAKEYLLNIIGQEASKSVI 60

Query: 62  EEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAELK 121
           EEYL+RRG + + SS     +SKLQ Y+KP ++  + SG K+ ++T K+   +G Q    
Sbjct: 61  EEYLQRRGQSTLVSSAPAAQSSKLQPYIKPLTENYVVSGGKQQARTSKDIV-SGDQG--- 116

Query: 122 KVMVPSYQVEPKKDAVSSH--NENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKGS 179
                  Q EPK + V  H  N    E+SESR   +G Q  +RKKKAGKV+SLAEAAKGS
Sbjct: 117 -------QAEPKTNTVPRHIGNRGPDEASESR--QKGIQGKSRKKKAGKVVSLAEAAKGS 167

Query: 180 IVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFA 239
            VFQQGKPC CQARQHRL+SNCLSCGKIVCEQEGEGPC FCGALVLKEGSTYAGLEE  A
Sbjct: 168 FVFQQGKPCPCQARQHRLVSNCLSCGKIVCEQEGEGPCSFCGALVLKEGSTYAGLEESMA 227

Query: 240 PLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEEV 299
           P SDAE AAEAY KRLV+YDRN+AARTTVIDDQSDYYEIEGNSWLS EEK+L++KKQEE 
Sbjct: 228 PTSDAEFAAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIEGNSWLSNEEKQLLRKKQEET 287

Query: 300 AEAEQAKRNKVVVTFDLVGRKV 321
            EAE AKR+KVVVTFDLVGRKV
Sbjct: 288 EEAELAKRSKVVVTFDLVGRKV 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456751|ref|XP_002275944.1| PREDICTED: activating signal cointegrator 1 [Vitis vinifera] gi|297733988|emb|CBI15235.3| unnamed protein product [Vitis vinifera]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/322 (68%), Positives = 257/322 (79%), Gaps = 23/322 (7%)

Query: 1   METAGEWLEKALVDLCKRIES-LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKS 59
           ME +G+WLEKAL++LCK +E+ LDLD ++ISGLVSYCE A PLDA+EYL NIIGQE G+S
Sbjct: 1   MENSGQWLEKALIELCKGMETGLDLDEDIISGLVSYCELAPPLDAQEYLHNIIGQEAGQS 60

Query: 60  VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAE 119
           VIEEYLRRRG  D  SST +VPTSKL AYVKP S+EG   G KKP +T K+         
Sbjct: 61  VIEEYLRRRGHKDSHSSTPDVPTSKLHAYVKPPSNEGSFGGAKKPLRTQKQ--------- 111

Query: 120 LKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKGS 179
              VMVP          V+   +   ++S SR  +  NQ  +RKKKAGKV+SLAEAAKGS
Sbjct: 112 ---VMVP----------VNQEKQAPTDTSNSRNTHVANQGGSRKKKAGKVVSLAEAAKGS 158

Query: 180 IVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGFA 239
           IVF+QGKPC+CQARQH L+SNCLSCGKIVCEQEGEGPC FCGALVL+EGSTYAGL+E   
Sbjct: 159 IVFKQGKPCTCQARQHTLVSNCLSCGKIVCEQEGEGPCSFCGALVLREGSTYAGLDESIV 218

Query: 240 PLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEEV 299
           PL+DAEAAAEAY KRLV+YDR++AARTTVIDDQSDYYEIEGNSWLS EEKEL++KK++E+
Sbjct: 219 PLTDAEAAAEAYAKRLVEYDRDSAARTTVIDDQSDYYEIEGNSWLSVEEKELLRKKKQEI 278

Query: 300 AEAEQAKRNKVVVTFDLVGRKV 321
             AEQAKRNKV+VTFDLVGRKV
Sbjct: 279 EAAEQAKRNKVIVTFDLVGRKV 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562832|ref|XP_003549672.1| PREDICTED: activating signal cointegrator 1-like [Glycine max]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/326 (70%), Positives = 268/326 (82%), Gaps = 19/326 (5%)

Query: 1   METAGEWLEKALVDLCKRIES---LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVG 57
           ME+AGEWLEKALV+LC +IE+   L LD ++I GLVSYC+ A+P DAKEYLDNIIGQ+ G
Sbjct: 1   MESAGEWLEKALVELCSKIETGLGLGLDQDIIKGLVSYCDLAEPRDAKEYLDNIIGQDAG 60

Query: 58  KSVIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQ 117
           K+VIEEYLRRRG ++  S  +NVPT+KL AYVKP S E  ASGTKK  KTPK   G G+ 
Sbjct: 61  KTVIEEYLRRRGYSE-SSIGSNVPTTKLHAYVKPPSVETSASGTKKSFKTPK-VAGRGNH 118

Query: 118 AELKKVMVPSYQVEPKKDAVSSHNENLAES--SESRTMNRGNQSNNRKKKAGKVISLAEA 175
           AE            P K+A SS+ EN   +  SES+T  +GNQ N++KKKAGKV+SLAEA
Sbjct: 119 AE------------PNKNASSSNQENQTPTVVSESKTSQKGNQLNSKKKKAGKVVSLAEA 166

Query: 176 AKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLE 235
           AKGSIVFQQG+PCSCQAR+H L+SNCLSCGKIVCEQEGEGPC FCGALVL+EGS+YAGLE
Sbjct: 167 AKGSIVFQQGRPCSCQARRHGLVSNCLSCGKIVCEQEGEGPCHFCGALVLREGSSYAGLE 226

Query: 236 EGFAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKK 295
           E   PLS++EA AEAY KRLV+YDRN+AARTTVIDDQSDYYEI+GNSWLSKEEKEL+KKK
Sbjct: 227 ESLPPLSESEAVAEAYAKRLVEYDRNSAARTTVIDDQSDYYEIDGNSWLSKEEKELLKKK 286

Query: 296 QEEVAEAEQAKRNKVVVTFDLVGRKV 321
           QEE+ EAE+AKRN+VVVTFDLVGRKV
Sbjct: 287 QEEMEEAEKAKRNRVVVTFDLVGRKV 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508370|gb|AFK42251.1| unknown [Medicago truncatula]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/324 (70%), Positives = 263/324 (81%), Gaps = 16/324 (4%)

Query: 1   METAGEWLEKALVDLCKRIES---LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVG 57
           METAG+WLEKALV+LC +IE+   L LD E+I GLVSYC+ AQP DAKEYLDNIIGQEVG
Sbjct: 1   METAGQWLEKALVELCAKIETGLGLGLDEEIIKGLVSYCDLAQPRDAKEYLDNIIGQEVG 60

Query: 58  KSVIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQ 117
           KSVIEEYLRRRG ++  S+ +NVPT+ L AYVKP S E   SG+KK  +TPK  T  G  
Sbjct: 61  KSVIEEYLRRRGHSEF-STKSNVPTTTLHAYVKPPSVETSTSGSKK--RTPKTVTVRGDH 117

Query: 118 AELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAK 177
           AE  K+ V S Q           +E  A SSESRT ++ NQ +++KKKAGK ISLAEAAK
Sbjct: 118 AEPNKIAVGSSQ----------GSEIPATSSESRTSHKVNQVSSKKKKAGKTISLAEAAK 167

Query: 178 GSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEG 237
           GSIVFQQG+PC+CQAR+H L+SNCLSCGKIVCEQEGEGPC FCGALVLKEGS+YAGLEE 
Sbjct: 168 GSIVFQQGRPCACQARRHNLVSNCLSCGKIVCEQEGEGPCNFCGALVLKEGSSYAGLEES 227

Query: 238 FAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQE 297
             PLS+ EAAAEAY KRLVDY RNAAARTTVIDDQSDYYE++ N+WLSKEEK+L+KKKQE
Sbjct: 228 LPPLSETEAAAEAYAKRLVDYGRNAAARTTVIDDQSDYYELDSNTWLSKEEKDLLKKKQE 287

Query: 298 EVAEAEQAKRNKVVVTFDLVGRKV 321
           E+ EAE+AKRNKVVVTFDLVGRKV
Sbjct: 288 EMEEAERAKRNKVVVTFDLVGRKV 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228204|ref|NP_190345.1| transcription regulator/ zinc ion binding protein [Arabidopsis thaliana] gi|6522544|emb|CAB61987.1| putative protein [Arabidopsis thaliana] gi|15028311|gb|AAK76632.1| unknown protein [Arabidopsis thaliana] gi|19310635|gb|AAL85048.1| unknown protein [Arabidopsis thaliana] gi|332644786|gb|AEE78307.1| transcription regulator/ zinc ion binding protein [Arabidopsis thaliana]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/323 (64%), Positives = 245/323 (75%), Gaps = 32/323 (9%)

Query: 1   META-GEWLEKALVDLCKRIES-LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGK 58
           M TA G+WLE+ALVDLC++ E+ L+ D +VISGLVSYC+ AQP+DAKEYLDNIIG+E GK
Sbjct: 1   MGTAVGQWLEEALVDLCRKPETGLNFDRDVISGLVSYCDLAQPVDAKEYLDNIIGKE-GK 59

Query: 59  SVIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQA 118
           S+I EYL+RRG  D  S        +LQ YVKP+ D G +SGTKKP KTPKE T +  QA
Sbjct: 60  SIIAEYLQRRGYKDPSSHVAASSGPELQMYVKPKVDNGASSGTKKPFKTPKEGTSSNQQA 119

Query: 119 ELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKG 178
              K+  P+ QV PKK                             KK GKVISLAEAAKG
Sbjct: 120 GTGKLTAPAQQVNPKK-----------------------------KKGGKVISLAEAAKG 150

Query: 179 SIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGF 238
           SIVFQQGKPC+CQAR+H L+SNCLSCGKIVCEQEGEGPC FCGALVLKEGSTYAGLE G+
Sbjct: 151 SIVFQQGKPCACQARRHHLVSNCLSCGKIVCEQEGEGPCSFCGALVLKEGSTYAGLEVGY 210

Query: 239 APLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEE 298
            P+SDA+ AAEAY KRLV+YDRN+AARTTVIDDQSDYYE E ++WLS EEKEL++KK+EE
Sbjct: 211 TPVSDADVAAEAYAKRLVEYDRNSAARTTVIDDQSDYYESESSTWLSAEEKELVRKKREE 270

Query: 299 VAEAEQAKRNKVVVTFDLVGRKV 321
           + EAE+ K++KVV+TFDL+GRKV
Sbjct: 271 IEEAERVKKSKVVMTFDLIGRKV 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815942|ref|XP_002875854.1| transcription regulator/ zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi|297321692|gb|EFH52113.1| transcription regulator/ zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/323 (65%), Positives = 248/323 (76%), Gaps = 32/323 (9%)

Query: 1   META-GEWLEKALVDLCKRIES-LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGK 58
           M TA G+WLE+ALVDLC++ E+ L+ D +VISGLVSYC+ AQP+DAKEYLDNIIG+E GK
Sbjct: 1   MATAVGQWLEEALVDLCRKPETGLNFDRDVISGLVSYCDLAQPVDAKEYLDNIIGKE-GK 59

Query: 59  SVIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQA 118
           ++I EYL+RRG  D  S   N    +LQ YVKP+ D G +SGTKKP KTPKE T +  QA
Sbjct: 60  TIIAEYLQRRGYKDPSSHVANSSGPELQMYVKPKVDNGASSGTKKPFKTPKEGTSSNQQA 119

Query: 119 ELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKG 178
              KV  P+ QV PKK                             KK GKVISLAEAAKG
Sbjct: 120 GTGKVTAPAQQVNPKK-----------------------------KKGGKVISLAEAAKG 150

Query: 179 SIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEGF 238
           SIVFQQGKPC+CQAR+H+L+SNCLSCGKIVCEQEGEGPC FCGALVLKEGSTYAGLEEG+
Sbjct: 151 SIVFQQGKPCACQARRHKLVSNCLSCGKIVCEQEGEGPCSFCGALVLKEGSTYAGLEEGY 210

Query: 239 APLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEE 298
            P+SDA+ AAEAY KRLV+YDRN+AARTTVIDDQSDYYE E +SWLS EEKEL++KK+EE
Sbjct: 211 TPVSDADVAAEAYAKRLVEYDRNSAARTTVIDDQSDYYESESSSWLSAEEKELVRKKREE 270

Query: 299 VAEAEQAKRNKVVVTFDLVGRKV 321
           + EAE+ K++KVV+TFDLVGRKV
Sbjct: 271 IEEAERVKKSKVVMTFDLVGRKV 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524918|ref|XP_004169468.1| PREDICTED: uncharacterized LOC101216786, partial [Cucumis sativus]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/290 (70%), Positives = 235/290 (81%), Gaps = 16/290 (5%)

Query: 1   METAGEWLEKALVDLCKRIES-LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVGKS 59
           M T+G+WLEKAL DLCK++E+   LD ++ISGLVSYCE AQP DAKEYLDNIIGQEVGKS
Sbjct: 1   MATSGQWLEKALDDLCKKMETGWGLDKDMISGLVSYCELAQPQDAKEYLDNIIGQEVGKS 60

Query: 60  VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAE 119
           VI EYLR RG +D+CS T +VPTS L  YVKP S EG   G+KKP KTPK  +       
Sbjct: 61  VINEYLRLRGHSDLCSKTLDVPTSTLHTYVKPPSHEGSFGGSKKPVKTPKTIS------- 113

Query: 120 LKKVMVPSYQVEPKKDAVSSHNENLAESSESR--TMNRGNQSNNRKKKAGKVISLAEAAK 177
                + S ++EPKK A SS N     SS++R  +  +GNQS++RKKKA KV+SLAEAAK
Sbjct: 114 -----ISSKEIEPKK-ATSSSNVESQVSSDTRNSSSGKGNQSSSRKKKATKVVSLAEAAK 167

Query: 178 GSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEEG 237
           GSIVFQQGKPCSCQAR+HRL+SNCLSCGKIVCEQEGEGPC FCG+LVL+EGSTYAG++EG
Sbjct: 168 GSIVFQQGKPCSCQARRHRLVSNCLSCGKIVCEQEGEGPCSFCGSLVLREGSTYAGMDEG 227

Query: 238 FAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKE 287
           F PLSDAEAAAEAY KRLV+YDRN+AART+VIDDQSDYY+IEGNSWLS E
Sbjct: 228 FTPLSDAEAAAEAYAKRLVEYDRNSAARTSVIDDQSDYYQIEGNSWLSNE 277

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477563|ref|XP_003609067.1| Activating signal cointegrator [Medicago truncatula] gi|355510122|gb|AES91264.1| Activating signal cointegrator [Medicago truncatula]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/325 (67%), Positives = 252/325 (77%), Gaps = 33/325 (10%)

Query: 1   METAGEWLEKALVDLCKRIES---LDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEVG 57
           METAG+WLEKALV+LC +IE+   L LD E+I GLVSYC+ AQP DAKEYLDNIIGQEVG
Sbjct: 1   METAGQWLEKALVELCAKIETGLGLGLDEEIIKGLVSYCDLAQPRDAKEYLDNIIGQEVG 60

Query: 58  KSVIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQ 117
           KSVIEEYLRRRG ++  S+ +NVPT+ L AYVKP S E   SG+KK  +TPK  T  G  
Sbjct: 61  KSVIEEYLRRRGHSEF-STKSNVPTTTLHAYVKPPSVETSTSGSKK--RTPKTVTVRGDH 117

Query: 118 AELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQ-SNNRKKKAGKVISLAEAA 176
           AE  K+ V S Q                          G++    +++K GK+ISLAEAA
Sbjct: 118 AEPNKIAVGSSQ--------------------------GSEIPFQKERKLGKLISLAEAA 151

Query: 177 KGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEE 236
           KGSIVFQQG+PC+CQAR+H L+SNCLSCGKIVCEQEGEGPC FCGALVLKEGS+YAGLEE
Sbjct: 152 KGSIVFQQGRPCACQARRHNLVSNCLSCGKIVCEQEGEGPCNFCGALVLKEGSSYAGLEE 211

Query: 237 GFAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQ 296
              PLS+ EAAAEAY KRLVDYDRNAAARTTVIDDQSDYYE++ N+WLSKEEK+L+KKKQ
Sbjct: 212 SLPPLSETEAAAEAYAKRLVDYDRNAAARTTVIDDQSDYYELDSNTWLSKEEKDLLKKKQ 271

Query: 297 EEVAEAEQAKRNKVVVTFDLVGRKV 321
           EE+ EAE+AKRNKVVVTFDLVGRKV
Sbjct: 272 EEMEEAERAKRNKVVVTFDLVGRKV 296

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2079192	408	AT3G47610 [Arabidopsis thalian	0.65	0.541	0.555	1.1e-57
UNIPROTKB|E1C1A8	581	TRIP4 "Uncharacterized protein	0.561	0.328	0.336	7.3e-23
ZFIN|ZDB-GENE-040724-92	564	trip4 "thyroid hormone recepto	0.847	0.510	0.269	5.9e-21
UNIPROTKB|H0YL91	368	TRIP4 "Activating signal coint	0.876	0.809	0.262	6.8e-19
UNIPROTKB|Q15650	581	TRIP4 "Activating signal coint	0.876	0.512	0.262	3.2e-18
RGD|1306838	539	Trip4 "thyroid hormone recepto	0.873	0.551	0.272	1.8e-17
MGI|MGI:1928469	581	Trip4 "thyroid hormone recepto	0.876	0.512	0.256	2.1e-17
UNIPROTKB|F6UYL9	581	TRIP4 "Uncharacterized protein	0.876	0.512	0.259	9e-17
UNIPROTKB|F1N1K2	579	TRIP4 "Uncharacterized protein	0.867	0.509	0.262	1.3e-16
UNIPROTKB|E2QU39	584	TRIP4 "Uncharacterized protein	0.879	0.511	0.258	2.1e-15

TAIR|locus:2079192 AT3G47610 [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 125/225 (55%), Positives = 146/225 (64%)

Query:   100 GTKKPSKTPKEFTGTGHQAELK-KVM--VPSYQVEPKKDAVSSHNENLAESSESRTMNRG 156
             G K PS      +G   Q  +K KV     S   +P K      + N  ++   +     
Sbjct:    70 GYKDPSSHVAASSGPELQMYVKPKVDNGASSGTKKPFKTPKEGTSSN-QQAGTGKLTAPA 128

Query:   157 NQSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGP 216
              Q N +KKK GKVISLAEAAKGSIVFQQGKPC+CQAR+H L+SNCLSCGKIVCEQEGEGP
Sbjct:   129 QQVNPKKKKGGKVISLAEAAKGSIVFQQGKPCACQARRHHLVSNCLSCGKIVCEQEGEGP 188

Query:   217 CQFCGALVLKEGSTYAGLEEGFAPLSDXXXXXXXYTKRLVDYDRNAAARTTVIDDQSDYY 276
             C FCGALVLKEGSTYAGLE G+ P+SD       Y KRLV+YDRN+AARTTVIDDQSDYY
Sbjct:   189 CSFCGALVLKEGSTYAGLEVGYTPVSDADVAAEAYAKRLVEYDRNSAARTTVIDDQSDYY 248

Query:   277 EIEGNSWLSXXXXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
             E E ++WLS                     ++KVV+TFDL+GRKV
Sbjct:   249 ESESSTWLSAEEKELVRKKREEIEEAERVKKSKVVMTFDLIGRKV 293

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|E1C1A8 TRIP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 211 (79.3 bits), Expect = 7.3e-23, Sum P(2) = 7.3e-23
 Identities = 75/223 (33%), Positives = 110/223 (49%)

Query:    12 LVDLC-KRIES---LDLDGEVISGLVSYCEFAQPLDAKEYLDNII-GQEVGKS-VIEEYL 65
             L+D C +R+     LD+  EV+  ++S        + +EY+ +++ G E  K   +EE L
Sbjct:     7 LLDWCVRRLRGDFGLDVGEEVVRYILS---ITSEDEIREYVVDLLQGTEGRKGRFVEELL 63

Query:    66 RRRGLTDICSSTTNVPTSKLQAY-VKPRSDEGLASGTKKPSKTPKEFTGTGHQAELKKVM 124
              R         ++  P   L AY  K  + E   +G +  +K  K   G   Q E    +
Sbjct:    64 SR------WQQSSQSPAEPLPAYRKKDETSESPRAGDQ--AKKGKR-KGRNKQ-ETPAYV 113

Query:   125 VPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISL--AEAAKGSIVF 182
              PS  VE  K  +     +LA++ ES T +    S+N  KK  K +SL   E      V 
Sbjct:   114 EPSTHVEEVKTPL-----DLAKAQESSTAS----SSNAYKKKTKYVSLYTKEGQDRLAVL 164

Query:   183 QQGK-PCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV 224
               G+  C C  ++H+LI+NCL CG+IVCEQEG GPC FCG+LV
Sbjct:   165 IPGRHACECLGQKHKLINNCLVCGRIVCEQEGSGPCLFCGSLV 207

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

ZFIN|ZDB-GENE-040724-92 trip4 "thyroid hormone receptor interactor 4" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 5.9e-21, P = 5.9e-21
 Identities = 90/334 (26%), Positives = 145/334 (43%)

Query:    13 VDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNII-GQEVGKS-VIEEYLRRRGL 70
             VD  K    LD   +++  ++S  + A  +   EY+ +++ G E  K   ++E ++R   
Sbjct:    10 VDKLKHGFGLDASDDIVQYILSI-DNADEI--VEYVGDLLQGTEGNKQEFVDELVQR--- 63

Query:    71 TDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGTGHQAELKKVMVPSYQV 130
                C + T+     L   +  R +  +      P  T K+    G     K+ +V   Q 
Sbjct:    64 WQRCQTQTS---DGLGGVL--RKEAVMEELDTAPKDTQKKSKRKGRN---KQEIVTVSQA 115

Query:   131 EPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAEAAKGSIVFQQGKPCSC 190
             EP+            ESS S ++ + ++  N   K GK        K +++    + C C
Sbjct:   116 EPEPVRTPIDLMKAQESSNSSSVKKKSKFVNLYAKEGK-------DKLAVLLPGRQACEC 168

Query:   191 QARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV--------LKEGSTYA---------- 232
              A++HRLI+NCLSCG+IVCEQEG GPC FCG+LV        L+  S  +          
Sbjct:   169 LAQKHRLINNCLSCGRIVCEQEGSGPCLFCGSLVCTNEEQEILQRDSNKSQKLRKKLMGE 228

Query:   233 GLEEGFAPLSDXXXXXXX-----YTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSXX 287
             G E  + P  +            +  +L+++D+N+  RT V+DD+SDY+  + N WLS  
Sbjct:   229 GTEREYLPHQESKMKAGLEKAVKHKDKLLEFDKNSVKRTQVLDDESDYFATDSNQWLSPG 288

Query:   288 XXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
                                R    +T D  GR+V
Sbjct:   289 EREALRKREEELRELRHASRKDRKITLDFAGRRV 322

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|H0YL91 TRIP4 "Activating signal cointegrator 1" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 6.8e-19, P = 6.8e-19
 Identities = 94/358 (26%), Positives = 149/358 (41%)

Query:     1 METAGEWLEKALVDLC----KRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEV 56
             M  AG    + LV  C    ++   LD+  E+I  ++S  E A+ +  +EY+ +++    
Sbjct:     1 MAVAGAVSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSI-ESAEEI--REYVTDLLQGNE 57

Query:    57 GKS--VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGT 114
             GK    IEE + +    D       + +  LQ   K   DE +  G K      +     
Sbjct:    58 GKKGQFIEELITKWQKND-----QELISDPLQQCFK--KDE-ILDGQKSGDHLKR----- 104

Query:   115 GHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAE 174
             G +    +  VP++  EP   A      +LA++ E+      + S  +K K   + +   
Sbjct:   105 GRKKGRNRQEVPAF-TEPDTTAEVKTPFDLAKAQEN------SNSVKKKTKFVNLYTREG 157

Query:   175 AAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV--------LK 226
               + +++     PC C  ++H+LI+NCL CG+IVCEQEG GPC FCG LV        L+
Sbjct:   158 QDRLAVLLPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQ 217

Query:   227 EGST---------YAGLEEG---------FAP-----LSDXXXXXXXYTKRLVDYDRNAA 263
               S           +G+E             P     +         +  +L+++DR + 
Sbjct:   218 RDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSI 277

Query:   264 ARTTVIDDQSDYYEIEGNSWLSXXXXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
              RT VIDD+SDY+  + N WLS                     R    VT D  GRK+
Sbjct:   278 RRTQVIDDESDYFASDSNQWLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKI 335

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q15650 TRIP4 "Activating signal cointegrator 1" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 94/358 (26%), Positives = 149/358 (41%)

Query:     1 METAGEWLEKALVDLC----KRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEV 56
             M  AG    + LV  C    ++   LD+  E+I  ++S  E A+ +  +EY+ +++    
Sbjct:     1 MAVAGAVSGEPLVHWCTQQLRKTFGLDVSEEIIQYVLSI-ESAEEI--REYVTDLLQGNE 57

Query:    57 GKS--VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGT 114
             GK    IEE + +    D       + +  LQ   K   DE +  G K      +     
Sbjct:    58 GKKGQFIEELITKWQKND-----QELISDPLQQCFK--KDE-ILDGQKSGDHLKR----- 104

Query:   115 GHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAE 174
             G +    +  VP++  EP   A      +LA++ E+      + S  +K K   + +   
Sbjct:   105 GRKKGRNRQEVPAF-TEPDTTAEVKTPFDLAKAQEN------SNSVKKKTKFVNLYTREG 157

Query:   175 AAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV--------LK 226
               + +++     PC C  ++H+LI+NCL CG+IVCEQEG GPC FCG LV        L+
Sbjct:   158 QDRLAVLLPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCLFCGTLVCTHEEQDILQ 217

Query:   227 EGST---------YAGLEEG---------FAP-----LSDXXXXXXXYTKRLVDYDRNAA 263
               S           +G+E             P     +         +  +L+++DR + 
Sbjct:   218 RDSNKSQKLLKKLMSGVENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSI 277

Query:   264 ARTTVIDDQSDYYEIEGNSWLSXXXXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
              RT VIDD+SDY+  + N WLS                     R    VT D  GRK+
Sbjct:   278 RRTQVIDDESDYFASDSNQWLSKLERETLQKREEELRELRHASRLSKKVTIDFAGRKI 335

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

RGD|1306838 Trip4 "thyroid hormone receptor interactor 4" [Rattus norvegicus (taxid:10116)]

 Score = 227 (85.0 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 98/359 (27%), Positives = 151/359 (42%)

Query:     1 METAGEWLEKALVDLC----KRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEV 56
             M  AG    + LV  C    ++  +LD+  E+I  ++S  E A+ +  ++Y+ +++    
Sbjct:     1 MAVAGAASGEPLVHWCTQQLRKTFALDVSEEIIQYVLSI-ESAEEI--RDYVTDLLQGNE 57

Query:    57 GKS--VIEEYLRRRGLTDI-CSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTG 113
             GK    IE+ + +    D  C S      S  Q + K  S +G  S  +      K   G
Sbjct:    58 GKKGQFIEDLITKWQKKDQECISD-----SFQQCWKKDESLDGQRSVDQLKRSRRK---G 109

Query:   114 TGHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLA 173
                Q E+     P   VE K         +LA++ E      GN S  +K +   + +  
Sbjct:   110 RNKQ-EVPAFPEPDVTVEVKTPL------DLAKAQE------GNSSVKKKTRFVSLYTRE 156

Query:   174 EAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV--------L 225
                K +++     PC C  ++H+LI+NCL CG+IVCEQEG GPC FCG+LV        L
Sbjct:   157 GQDKLAVLLPGRHPCDCLGQKHKLINNCLVCGRIVCEQEGSGPCLFCGSLVCTNEEQDIL 216

Query:   226 KEGST---------YAGLEE-GFAPLS-------------DXXXXXXXYTKRLVDYDRNA 262
             +  S           +G E  G   +S                     + ++L+++DR +
Sbjct:   217 QRDSNKSQKLLKKLMSGAENSGKVDISTKDHPPHQESRMKSGLEKAVKHKEKLLEFDRTS 276

Query:   263 AARTTVIDDQSDYYEIEGNSWLSXXXXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
               RT VIDD+SDY+  + N WLS                     R    VT D  GRK+
Sbjct:   277 IRRTQVIDDESDYFASDSNQWLSKVERDMLQKREEELRELRHASRLSKKVTIDFAGRKI 335

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1928469 Trip4 "thyroid hormone receptor interactor 4" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 92/358 (25%), Positives = 153/358 (42%)

Query:     1 METAGEWLEKALVDLC-KRIE---SLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEV 56
             M  AG    + LV  C ++++   +LD+  E+I  ++S  E A+ +  +EY+ +++    
Sbjct:     1 MAVAGAAYREPLVHWCTQQLQKTFALDVSEEIIQYVLSI-ENAEEI--REYVTDLLQGNE 57

Query:    57 GKS--VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGT 114
             GK    IE+ + +    D         +   Q  +  R DE +  G +   +  +     
Sbjct:    58 GKKGQFIEDLITKWQKND-----QEFISDSFQQCL--RKDE-ILDGQRSVDQLKRSRRKG 109

Query:   115 GHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAE 174
              ++ E+     P   VE K         +LA++ ES      N S  +K +   + +   
Sbjct:   110 RNKQEVPAFPEPDVAVEVKTPL------DLAKAQES------NNSVKKKTRFVNLYTREG 157

Query:   175 AAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV---------- 224
               K +++     PC C  ++H+LI+NCL CG+IVCEQEG GPC FCG+LV          
Sbjct:   158 QDKLAVLLPGRHPCDCLGQKHKLINNCLVCGRIVCEQEGSGPCLFCGSLVCTNEEQDILQ 217

Query:   225 ---------LKE---GSTYAG---------LEEGFAPLSDXXXXXXXYTKRLVDYDRNAA 263
                      LK+   G+  +G         L    + +         + ++L+++DR + 
Sbjct:   218 RDSNKSQKLLKKLMSGAETSGKVDVSTKDLLPHQESRMKSGLEKAIKHKEKLLEFDRTSI 277

Query:   264 ARTTVIDDQSDYYEIEGNSWLSXXXXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
              RT VIDD+SDY+  + N WLS                     R    VT D  GRK+
Sbjct:   278 RRTQVIDDESDYFASDSNQWLSKVEREMLQKREEELRELRHASRLSKKVTIDFAGRKI 335

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F6UYL9 TRIP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 224 (83.9 bits), Expect = 9.0e-17, P = 9.0e-17
 Identities = 93/358 (25%), Positives = 150/358 (41%)

Query:     1 METAGEWLEKALVDLC----KRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNII-GQE 55
             M  AG    + LV  C    ++   LD+  E++  ++S  E A+ +  +EY+ +++ G E
Sbjct:     1 MAVAGAASREQLVGWCTQELRKTFGLDVSEEIMQYVLSI-ESAEEI--REYVTDLLQGNE 57

Query:    56 VGKS-VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGT 114
               K   IEE + +    D   S+  +P    Q++ K    +G  SG +      K   G 
Sbjct:    58 DKKGQFIEELITKWQKNDQELSSDALP----QSFKKDEMLDGQRSGDQLKRSRRK---GR 110

Query:   115 GHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAE 174
               Q       VP++  EP          +LA++ E+      + S  +K K   + +   
Sbjct:   111 NRQE------VPAF-AEPDTTKEVKTPFDLAKAQEN------SNSLKKKTKFVSLYTKEG 157

Query:   175 AAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV--------LK 226
               + +++     PC C  ++H+LI+NCL CG+IVCEQEG GPC FCG LV        L+
Sbjct:   158 QDRLAVLIPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCFFCGTLVCTREEQDILQ 217

Query:   227 EGST---------YAGLEEG---------FAP-----LSDXXXXXXXYTKRLVDYDRNAA 263
               S           +G E             P     +         +  +L+++DR + 
Sbjct:   218 RDSNKSQKLLKKLMSGTENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRTSI 277

Query:   264 ARTTVIDDQSDYYEIEGNSWLSXXXXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
              RT VIDD++DY+  + N WLS                     R    +T D  GRK+
Sbjct:   278 RRTQVIDDEADYFASDSNQWLSKIERETLQKREEELREFRHMSRLSKKITIDFAGRKI 335

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1N1K2 TRIP4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 223 (83.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 94/358 (26%), Positives = 148/358 (41%)

Query:     1 METAGEWLEKALVDLC----KRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNIIGQEV 56
             M  AG    + LV  C    ++   LD+  E+I  ++S  E A+ +  +EY+ +++    
Sbjct:     1 MAVAGAASREQLVGWCTEQLRKSFGLDVSEEIIQYVLSI-ESAEEI--REYVTDLLQGNE 57

Query:    57 GKS--VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFTGT 114
             GK    IEE + +    D       + +  LQ   K   D+G  SG +      K   G 
Sbjct:    58 GKKGQFIEELVTKWQKND-----QELTSDALQQSFK--KDDGQRSGDQLKRSRRK---GR 107

Query:   115 GHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISLAE 174
               Q        P++  EP          +LA++ ++      + S  +K K   + +   
Sbjct:   108 NKQE------APAF-TEPDTTTEVKTPFDLAKAQDN------SSSLKKKTKFVSLYTKEG 154

Query:   175 AAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV--------LK 226
               K +++     PC C  ++H+LI+NCL CG+IVCEQEG GPC FCG+LV        L+
Sbjct:   155 QDKLAVLIPGRHPCDCLGQKHKLINNCLVCGRIVCEQEGSGPCLFCGSLVCTHEERDILQ 214

Query:   227 EGST---------YAGLEE-GFAPLS-------------DXXXXXXXYTKRLVDYDRNAA 263
               S           +G E  G   +S                     +  +L+++DR + 
Sbjct:   215 RDSNKSQKLLKKLMSGTENSGKVDISTKDLLPHQELRFKSGLEKAIKHKDKLLEFDRTSI 274

Query:   264 ARTTVIDDQSDYYEIEGNSWLSXXXXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
              RT VIDD+SDY+  + N WLS                     R    +T D  GRK+
Sbjct:   275 RRTQVIDDESDYFASDSNQWLSKIEREAIQKREEELREFRHASRLSKKITIDFAGRKI 332

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2QU39 TRIP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 93/360 (25%), Positives = 148/360 (41%)

Query:     1 METAGEWLEKALVDLC----KRIESLDLDGEVIS--GLVSYCEFAQPLDAKEYLDNII-G 53
             M  AG    + LV  C    ++   LD+  E++     V   E A+ +  +EY+ +++ G
Sbjct:     1 MAVAGAASREQLVGWCTQELRKTFGLDVSEEIMHFPRYVLSIESAEEI--REYVTDLLQG 58

Query:    54 QEVGKS-VIEEYLRRRGLTDICSSTTNVPTSKLQAYVKPRSDEGLASGTKKPSKTPKEFT 112
              E  K   IEE + +    D   S+  +P    Q++ K    +G  SG +      K   
Sbjct:    59 NEDKKGQFIEELITKWQKNDQELSSDALP----QSFKKDEMLDGQRSGDQLKRSRRK--- 111

Query:   113 GTGHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQSNNRKKKAGKVISL 172
             G   Q       VP++  EP          +LA++ E+      + S  +K K   + + 
Sbjct:   112 GRNRQE------VPAF-AEPDTTKEVKTPFDLAKAQEN------SNSLKKKTKFVSLYTK 158

Query:   173 AEAAKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALV-------- 224
                 + +++     PC C  ++H+LI+NCL CG+IVCEQEG GPC FCG LV        
Sbjct:   159 EGQDRLAVLIPGRHPCDCLGQKHKLINNCLICGRIVCEQEGSGPCFFCGTLVCTREEQDI 218

Query:   225 LKEGST---------YAGLEEG---------FAP-----LSDXXXXXXXYTKRLVDYDRN 261
             L+  S           +G E             P     +         +  +L+++DR 
Sbjct:   219 LQRDSNKSQKLLKKLMSGTENSGKVDISTKDLLPHQELRIKSGLEKAIKHKDKLLEFDRT 278

Query:   262 AAARTTVIDDQSDYYEIEGNSWLSXXXXXXXXXXXXXXXXXXXXXRNKVVVTFDLVGRKV 321
             +  RT VIDD++DY+  + N WLS                     R    +T D  GRK+
Sbjct:   279 SIRRTQVIDDEADYFASDSNQWLSKIERETLQKREEELREFRHMSRLSKKITIDFAGRKI 338

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
pfam06221	53	pfam06221, zf-C2HC5, Putative zinc finger motif, C	3e-20

>gnl|CDD|218944 pfam06221, zf-C2HC5, Putative zinc finger motif, C2HC5-type

 Score = 82.4 bits (204), Expect = 3e-20
 Identities = 25/53 (47%), Positives = 34/53 (64%)

Query: 184 QGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAGLEE 236
             + C+CQA +H L  NCL+CGKI+CE+EG GPC FCG  +L      + + E
Sbjct: 1   GRRKCNCQATRHPLAPNCLNCGKIICEKEGLGPCSFCGTPLLSSAEIQSLIRE 53

This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG2845	505	consensus Activating signal cointegrator 1 [Transc	100.0
PF06221	57	zf-C2HC5: Putative zinc finger motif, C2HC5-type;	99.83
PF01480	77	PWI: PWI domain; InterPro: IPR002483 The PWI domai	93.52
PF13248	26	zf-ribbon_3: zinc-ribbon domain	90.6
PF05361	144	PP1_inhibitor: PKC-activated protein phosphatase-1	87.33
smart00311	74	PWI PWI, domain in splicing factors.	86.9
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	85.19
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	82.54

>KOG2845 consensus Activating signal cointegrator 1 [Transcription]

Probab=100.00  E-value=3.3e-59  Score=467.55  Aligned_cols=286  Identities=37%  Similarity=0.566  Sum_probs=215.1

Q ss_pred             hHhhHHHHHHHHHhhcccCCCcHHHHHHhhcccccCCchHHHHHHHHhh-CCcchH-HHHHHHHHHhccccCCCCCCCCC
Q 019483            4 AGEWLEKALVDLCKRIESLDLDGEVISGLVSYCEFAQPLDAKEYLDNII-GQEVGK-SVIEEYLRRRGLTDICSSTTNVP   81 (340)
Q Consensus         4 ~~~w~~~~L~~~~~~~~~L~~~~d~~~~ils~~el~~~~d~~eY~~nLL-G~e~~~-~Fi~e~~~r~~~~~~~~~~~~~~   81 (340)
                      .|+||...++..|..-.++++.++||+||+++   +...|+.+||.+|| |++.-+ +| ++-      .+     .--+
T Consensus         5 ~~e~l~~~~~~~l~k~~~~~~~d~~i~~~l~~---~~~~ef~~~f~~ll~~n~~k~~k~-~~~------h~-----~~li   69 (505)
T KOG2845|consen    5 SGEPLEHWCTQQLRKTSDEDISDEIIQYLLSI---ESDEEFREYFTELLSGNEGKEGKF-EEK------HD-----EFLI   69 (505)
T ss_pred             cchhHHHHHHHHhccccchhhHHHHHHHhhhh---hhhHHHHHHHHHHhcccCCCCccc-hhh------cH-----HHhh
Confidence            57777655555533333366679999999994   79999999999999 777322 77 440      01     0112


Q ss_pred             CCcccccccCCCcccc-cCCC--CCCCCCCCcccCCCcccchhhhcccccccCccccccccCCCCCccchhhhhcccCCC
Q 019483           82 TSKLQAYVKPRSDEGL-ASGT--KKPSKTPKEFTGTGHQAELKKVMVPSYQVEPKKDAVSSHNENLAESSESRTMNRGNQ  158 (340)
Q Consensus        82 s~~~~~~~k~~~~~~~-~~~~--kk~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~s~~~~~~~~~~  158 (340)
                      ++++|.+.|++....+ .+|.  |+++++++           |.+++|+|. .|..   ..+..+|+.  ++++.+    
T Consensus        70 ~~~~q~~~k~~~~~~g~k~~d~~k~~~~~g~-----------~ss~~~~~~-~P~~---~ts~~~p~~--k~~~~s----  128 (505)
T KOG2845|consen   70 SDPLQQCSKKDMILSGPKSGDHLKRKRKNGK-----------KSSTTPAFV-SPDT---TTSVKTPFK--KKQENS----  128 (505)
T ss_pred             cccccccchhhhhhccchhcccccccccccc-----------ccCCCCCCC-CCCc---cccccChhh--hhhccc----
Confidence            4456667776665332 3333  23333333           457788874 3321   233456664  344433    


Q ss_pred             cccccccccceehHHHh---hcCCcccCCCCccccccccCccccccccccceeeecccCcccCCCCcccccCCCcccc--
Q 019483          159 SNNRKKKAGKVISLAEA---AKGSIVFQQGKPCSCQARQHRLISNCLSCGKIVCEQEGEGPCQFCGALVLKEGSTYAG--  233 (340)
Q Consensus       159 ~~~~~kkk~K~vsL~e~---~~~~~~~~~r~~C~C~A~~H~Li~NCL~CGKIiCeqEG~gPC~FCG~~v~~~~~~~~~--  233 (340)
                       ++.+++.-|+++||..   ..++|+++|||+|+|||++|||++|||+||||||+|||+|||+|||++|++.+..+..  
T Consensus       129 -~~~k~k~~k~inl~i~~~e~s~~i~~~grk~C~CQg~kHpLi~NCL~CGkIVCeQEGsGPC~fCg~~V~t~eeq~~l~~  207 (505)
T KOG2845|consen  129 -SSVKGKSLKNINLAIRQPEASLAILLKGRKPCNCQGRKHPLINNCLGCGKIVCEQEGSGPCGFCGTPVCTREEQGILNR  207 (505)
T ss_pred             -ccccccccccHHHHhccHHHhhhhhhcCCccccccCCcCchhhcccccceeEEEecCcccccccCCeeechhHHHHHHH
Confidence             4444555599999874   2467888999999999999999999999999999999999999999999998754311  


Q ss_pred             ------cccCCCCCcHHHHHHHHHHHhHhhhhhcccccccccccccccccccCCccCCHHHHHHHHHHHHHHHHHHHhhc
Q 019483          234 ------LEEGFAPLSDAEAAAEAYTKRLVDYDRNAAARTTVIDDQSDYYEIEGNSWLSKEEKELIKKKQEEVAEAEQAKR  307 (340)
Q Consensus       234 ------~~~~~~p~~~a~~~A~~~rdkLLefdrtsA~RTkVIDDqsDyf~~~~n~WlS~~ER~~l~K~q~El~e~~~~~R  307 (340)
                            +. +-..++++..+|.+|++|||+||+||++||+||||++|||..+++.|||..||+.++++++|++|.+|++|
T Consensus       208 ~~n~~~l~-G~~~iss~~~~A~~~k~klLe~d~nS~rrt~viddqsDyf~~~s~~wlS~~erE~l~k~~eE~eelea~eR  286 (505)
T KOG2845|consen  208 ELNQKLLK-GKVSISSALEKAYVHKDKLLEYDRNSERRTKVIDDQSDYFSLESSSWLSALEREKLEKRQEELEELEAAER  286 (505)
T ss_pred             Hhhhhhcc-CccccchhhhhHHHHHhhhccccccccccccccCCcchhhhccccccccHHHHHHHHhhHHHHHHHHHHHh
Confidence                  11 11146778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEEecCCEEeccccc
Q 019483          308 NKVVVTFDLVGRKVSTFCRI  327 (340)
Q Consensus       308 ~k~~vtiD~~grkVv~~e~~  327 (340)
                      .+++||+||+||+|++++..
T Consensus       287 ~~~~~t~DfaGrk~~~e~~~  306 (505)
T KOG2845|consen  287 QKVKLTFDFAGRKALEEETS  306 (505)
T ss_pred             hheeeeeeccccccccchhh
Confidence            99999999999999887654

>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.83  E-value=1.2e-21  Score=147.95  Aligned_cols=44  Identities=59%  Similarity=1.309  Sum_probs=41.5

Q ss_pred             CCccccccccCcc---ccccccccceeeeccc-CcccCCCCcccccCC
Q 019483          185 GKPCSCQARQHRL---ISNCLSCGKIVCEQEG-EGPCQFCGALVLKEG  228 (340)
Q Consensus       185 r~~C~C~A~~H~L---i~NCL~CGKIiCeqEG-~gPC~FCG~~v~~~~  228 (340)
                      |+.|+|||++|||   +||||+||||||++|| +|||+|||++|++..
T Consensus         2 r~~C~C~a~~H~L~~~~~NCl~CGkIiC~~Eg~~~pC~fCg~~l~~~~   49 (57)
T PF06221_consen    2 RRKCNCQARRHPLFPYAPNCLNCGKIICEQEGPLGPCPFCGTPLLSSE   49 (57)
T ss_pred             CcccccccccCCCccccccccccChhhcccccCcCcCCCCCCcccCHH
Confidence            6899999999999   8999999999999999 899999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []

Probab=93.52  E-value=0.095  Score=41.34  Aligned_cols=60  Identities=18%  Similarity=0.411  Sum_probs=46.3

Q ss_pred             hHhhHHHHHHHHHhhcccCCCc-HHHHHHhhcccccC--------CchHHHHHHHHhhCCcchHHHHHHHHHHhcccc
Q 019483            4 AGEWLEKALVDLCKRIESLDLD-GEVISGLVSYCEFA--------QPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTD   72 (340)
Q Consensus         4 ~~~w~~~~L~~~~~~~~~L~~~-~d~~~~ils~~el~--------~~~d~~eY~~nLLG~e~~~~Fi~e~~~r~~~~~   72 (340)
                      --.|+.+.|.++      ||++ +.++.||+..  |.        ++.++.+=+..+|| +....|+.+|-++.-+..
T Consensus         4 lk~WI~~kl~e~------lG~edd~lvdyI~~~--l~~~~~~~~~~~~~l~~~L~~fL~-~~a~~Fv~~Lw~~l~~~q   72 (77)
T PF01480_consen    4 LKPWISKKLEEI------LGFEDDVLVDYIVAL--LKSHKSSNEPDPKELQEQLEDFLD-EEAEEFVDELWRLLISAQ   72 (77)
T ss_dssp             HHHHHHHHHHHH------HSS--CHHHHHHHHH--CCTT--SSS--HHHHHHHHTTTTG-HHCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH------hCCCcHHHHHHHHHH--HHhccccccccHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHh
Confidence            356999999999      9986 5566899987  44        67777888888888 547799999988876644

It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=90.60  E-value=0.11  Score=33.43  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=19.8

Q ss_pred             ccccccceeeecccCcccCCCCccc
Q 019483          200 NCLSCGKIVCEQEGEGPCQFCGALV  224 (340)
Q Consensus       200 NCL~CGKIiCeqEG~gPC~FCG~~v  224 (340)
                      .|.+||..  ...+..-|..||+.|
T Consensus         4 ~Cp~Cg~~--~~~~~~fC~~CG~~L   26 (26)
T PF13248_consen    4 FCPNCGAE--IDPDAKFCPNCGAKL   26 (26)
T ss_pred             CCcccCCc--CCcccccChhhCCCC
Confidence            69999997  478889999999875

>PF05361 PP1_inhibitor: PKC-activated protein phosphatase-1 inhibitor; InterPro: IPR008025 Contractility of vascular smooth muscle depends on phosphorylation of myosin light chains, and is modulated by hormonal control of myosin phosphatase activity

Probab=87.33  E-value=1.1  Score=40.14  Aligned_cols=62  Identities=19%  Similarity=0.363  Sum_probs=43.9

Q ss_pred             hHhhHHHHHHHHHhhcccCCCc-HHH-----HHHhhcccccCCchHHHHHHHHhhC--CcchHHHHHHHHHHhccccCC
Q 019483            4 AGEWLEKALVDLCKRIESLDLD-GEV-----ISGLVSYCEFAQPLDAKEYLDNIIG--QEVGKSVIEEYLRRRGLTDIC   74 (340)
Q Consensus         4 ~~~w~~~~L~~~~~~~~~L~~~-~d~-----~~~ils~~el~~~~d~~eY~~nLLG--~e~~~~Fi~e~~~r~~~~~~~   74 (340)
                      .++|+.+.|.+|      .+.- ++|     |..||+   |.+.++=..|+..||-  ......||.|||.+...-...
T Consensus        51 vE~WId~qL~eL------y~~~e~~~p~EIDIDeLLD---l~sdeeR~~~LqelL~~C~~ptE~FI~ELL~kLkgL~k~  120 (144)
T PF05361_consen   51 VEEWIDEQLQEL------YDCQEDEMPEEIDIDELLD---LESDEERRRKLQELLQDCPKPTEDFIQELLSKLKGLRKL  120 (144)
T ss_dssp             HHHHHHHHHHHC------SSSSSTTS-SSSHHHHHHC---TSSTTHHHHHHHHHHTTCSSTTHHHHHHHHHHCTTT---
T ss_pred             HHHHHHHHHHHH------hcCCCCCCCCcccHHHHhc---CCchHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhcC
Confidence            478999999999      3332 121     566777   6788888999999993  343569999999997764433

Signaling pathways activate kinases such as PKC or Rho-dependent kinases that phosphorylate the myosin phosphatase inhibitor protein called CPI-17. Phosphorylation of CPI-17 at Thr-38 enhances its inhibitory potency 1000-fold, creating a molecular switch for regulating contraction [].; GO: 0042325 regulation of phosphorylation, 0005737 cytoplasm; PDB: 2RLT_A 1J2M_A 1K5O_A 1J2N_A.

>smart00311 PWI PWI, domain in splicing factors

Probab=86.90  E-value=2.1  Score=33.58  Aligned_cols=58  Identities=14%  Similarity=0.279  Sum_probs=40.4

Q ss_pred             HhhHHHHHHHHHhhcccCCCc-HHHHHHhhcccc-cCCchHHHHHHHHhhCCcchHHHHHHHHHHhc
Q 019483            5 GEWLEKALVDLCKRIESLDLD-GEVISGLVSYCE-FAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRG   69 (340)
Q Consensus         5 ~~w~~~~L~~~~~~~~~L~~~-~d~~~~ils~~e-l~~~~d~~eY~~nLLG~e~~~~Fi~e~~~r~~   69 (340)
                      -.|+.+.+.++      ||++ +.++.||++.+. =.+|.++...+... |-+....|+.+|-++.-
T Consensus        10 k~WI~~kv~e~------LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~-~f~da~~Fv~~Lw~~l~   69 (74)
T smart00311       10 KPWITKKVIEF------LGFEEDTLVEFILSQIRQHKGPQAKLLQINLT-GFEDAEEFVDKLWRLLI   69 (74)
T ss_pred             HHHHHHHHHHH------HCCChHHHHHHHHHHHHhCCChHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence            46899999998      9997 556789998753 12566665555333 44447899999977643

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=85.19  E-value=0.37  Score=30.43  Aligned_cols=22  Identities=27%  Similarity=0.821  Sum_probs=18.3

Q ss_pred             cccccceeeecccCcccCCCCccc
Q 019483          201 CLSCGKIVCEQEGEGPCQFCGALV  224 (340)
Q Consensus       201 CL~CGKIiCeqEG~gPC~FCG~~v  224 (340)
                      |.+||+-+  .++..-|..||++|
T Consensus         2 Cp~CG~~~--~~~~~fC~~CG~~l   23 (23)
T PF13240_consen    2 CPNCGAEI--EDDAKFCPNCGTPL   23 (23)
T ss_pred             CcccCCCC--CCcCcchhhhCCcC
Confidence            78899885  77888999999875

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=82.54  E-value=0.66  Score=34.69  Aligned_cols=27  Identities=41%  Similarity=0.887  Sum_probs=20.8

Q ss_pred             cccccccceeee--ccc-CcccCCCCccccc
Q 019483          199 SNCLSCGKIVCE--QEG-EGPCQFCGALVLK  226 (340)
Q Consensus       199 ~NCL~CGKIiCe--qEG-~gPC~FCG~~v~~  226 (340)
                      --|+.||+++ +  +++ .--|.+||.-++-
T Consensus         7 Y~C~~Cg~~~-~~~~~~~~irCp~Cg~rIl~   36 (49)
T COG1996           7 YKCARCGREV-ELDQETRGIRCPYCGSRILV   36 (49)
T ss_pred             EEhhhcCCee-ehhhccCceeCCCCCcEEEE
Confidence            3699999999 4  233 3679999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
1x4q_A	92	U4/U6 small nuclear ribonucleoprotein PRP3; PWI do	91.21
1j2m_A	99	CPI-17, 17-kDa PKC-potentiated inhibitory protein	85.85

>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.21  E-value=0.25  Score=39.63  Aligned_cols=61  Identities=11%  Similarity=0.223  Sum_probs=48.2

Q ss_pred             HhhHHHHHHHHHhhcccCCCc-HHHHHHhhcccc-cCCchHHHHHHHHhhCCcchHHHHHHHHHHhcccc
Q 019483            5 GEWLEKALVDLCKRIESLDLD-GEVISGLVSYCE-FAQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTD   72 (340)
Q Consensus         5 ~~w~~~~L~~~~~~~~~L~~~-~d~~~~ils~~e-l~~~~d~~eY~~nLLG~e~~~~Fi~e~~~r~~~~~   72 (340)
                      -.|+.+.+.++      |++. +-++.||+..++ -.+|.++.+-+..+|+.+ ...|+.+|-++.-+..
T Consensus        19 kpWI~kkv~e~------LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~-a~~Fv~eLW~lL~~aq   81 (92)
T 1x4q_A           19 KPWIEKTVKRV------LGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDS-TLRFVDKLFEAVEEGR   81 (92)
T ss_dssp             HHHHHHHHHHH------HSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGG-THHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHH------cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHH
Confidence            46999999999      9996 666788888654 356777888888888766 7799999998886644

>1j2m_A CPI-17, 17-kDa PKC-potentiated inhibitory protein of PP1; helix bundle, protein binding; NMR {Sus scrofa} SCOP: a.165.1.1 PDB: 2rlt_A* 1j2n_A 1k5o_A

Probab=85.85  E-value=0.69  Score=37.99  Aligned_cols=61  Identities=13%  Similarity=0.345  Sum_probs=42.1

Q ss_pred             hHhhHHHHHHHHHhhccc-C--CCcHHHHHHhhcccccCCchHHHHHHHHhh--CCcchHHHHHHHHHHhcc
Q 019483            4 AGEWLEKALVDLCKRIES-L--DLDGEVISGLVSYCEFAQPLDAKEYLDNII--GQEVGKSVIEEYLRRRGL   70 (340)
Q Consensus         4 ~~~w~~~~L~~~~~~~~~-L--~~~~d~~~~ils~~el~~~~d~~eY~~nLL--G~e~~~~Fi~e~~~r~~~   70 (340)
                      .++|+.++|.++-.--+. +  ++|   |..||+   |++.++=..|+..||  ..-....||.+||.|...
T Consensus        31 ~E~WI~~qL~eLy~~~e~e~p~eID---iDeLLD---l~sdeeR~~~LqelL~~C~~ptE~FI~eLL~rlkg   96 (99)
T 1j2m_A           31 VEKWIDGRLEELYRGREADMPDEVN---IDELLE---LESEEERSRKIQGLLKSCTNPTENFVQELLVKLRG   96 (99)
T ss_dssp             HHHHHHHHHHHSCTTSSCSCCSSCC---SHHHHC---CTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhcCccccCCcccC---HHHHhc---CCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            478999999999221111 1  222   345666   678888899999999  334355999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	87.12
d1j2na_	99	Myosin phosphatase inhibitor 17kDa protein, CPI-17	85.7
d1mp1a_	111	Ser/Arg-related nuclear matrix protein srm160 {Hum	83.77

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=87.12  E-value=0.14  Score=34.75  Aligned_cols=26  Identities=19%  Similarity=0.416  Sum_probs=22.9

Q ss_pred             ccccccccceeeecccCcccCCCCcc
Q 019483          198 ISNCLSCGKIVCEQEGEGPCQFCGAL  223 (340)
Q Consensus       198 i~NCL~CGKIiCeqEG~gPC~FCG~~  223 (340)
                      .--|++||-|+--.+-...|+-||.+
T Consensus         8 ~W~C~~CGyi~~g~~aP~~CPvC~~p   33 (44)
T d1lkoa2           8 KWRCRNCGYVHEGTGAPELCPACAHP   33 (44)
T ss_dssp             EEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred             EEEcCCCCcEEECCCCCCcCCCCCCc
Confidence            34699999999888889999999985

>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein, CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: Myosin phosphatase inhibitor 17kDa protein, CPI-17
superfamily: Myosin phosphatase inhibitor 17kDa protein, CPI-17
family: Myosin phosphatase inhibitor 17kDa protein, CPI-17
domain: Myosin phosphatase inhibitor 17kDa protein, CPI-17
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.70  E-value=0.73  Score=35.91  Aligned_cols=63  Identities=13%  Similarity=0.248  Sum_probs=42.2

Q ss_pred             hHhhHHHHHHHHHhhccc-CCCcHHHHHHhhcccccCCchHHHHHHHHhh--CCcchHHHHHHHHHHhcc
Q 019483            4 AGEWLEKALVDLCKRIES-LDLDGEVISGLVSYCEFAQPLDAKEYLDNII--GQEVGKSVIEEYLRRRGL   70 (340)
Q Consensus         4 ~~~w~~~~L~~~~~~~~~-L~~~~d~~~~ils~~el~~~~d~~eY~~nLL--G~e~~~~Fi~e~~~r~~~   70 (340)
                      .++|+.+.|.+|-..-+. .+. +==|..||.   |++.++=..++..||  +......||.+||.+.+.
T Consensus        31 ~E~WI~~qL~~Ly~~~e~~~p~-EIDiDeLLd---l~s~e~R~~~lq~lL~~c~kPtE~FI~eLL~klrg   96 (99)
T d1j2na_          31 VEKWIDGRLEELYRGREADMPD-EVNIDELLE---LESEEERSRKIQGLLKSCTNPTENFVQELLVKLRG   96 (99)
T ss_dssp             HHHHHHHHHHHHCSSCCTTCCS-CCCHHHHTC---SSCSHHHHHHHHHHHTSSSSCSHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhcCcccCCCC-ccCHHHHHc---cCChHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence            479999999999211111 211 111356677   577777678999999  445466999999998654

>d1mp1a_ a.188.1.1 (A:) Ser/Arg-related nuclear matrix protein srm160 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: PWI domain
superfamily: PWI domain
family: PWI domain
domain: Ser/Arg-related nuclear matrix protein srm160
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.77  E-value=0.65  Score=36.78  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=46.1

Q ss_pred             hhHhhHHHHHHHHHhhcccCCCc-HHHHHHhhccccc--CCchHHHHHHHHhhCCcchHHHHHHHHHHhcccc
Q 019483            3 TAGEWLEKALVDLCKRIESLDLD-GEVISGLVSYCEF--AQPLDAKEYLDNIIGQEVGKSVIEEYLRRRGLTD   72 (340)
Q Consensus         3 ~~~~w~~~~L~~~~~~~~~L~~~-~d~~~~ils~~el--~~~~d~~eY~~nLLG~e~~~~Fi~e~~~r~~~~~   72 (340)
                      .---|+.+.+.++      ||++ +-++.||+++.+-  -+|.++..=+...|+.+++..|+.+|-++.-+..
T Consensus        24 ~ikpWI~kkI~e~------LG~EDdvvvd~i~~~L~~~~~dpk~l~i~L~gfLd~k~a~~Fv~eLW~LLi~aq   90 (111)
T d1mp1a_          24 VIKPWITKRVTEI------LGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELWPLLLSAQ   90 (111)
T ss_dssp             GGHHHHHHHHHHH------HSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH------hCcchHHHHHHHHHHHHccCCCHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence            3457999999999      9987 5566889888531  2455555555556665557899999988887644