Citrus Sinensis ID: 019490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Secondary Structure (PSIPRED)
ccccEEEcEEcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccEEEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mvavkrsncfhrhghhvkcytsnnplMIIFACIQIVLSqipnfhklSWLSILAAVMSFAYSSIGIGLSIAKvigdgphattltgttvgvdvsASEKVWRAFQAIGDVAFAYAFSTVLVEIQDtlkssppenksmkratAVGVTTTTLFYIMCGVMgylafgndapgnfltgfgfyepfwlvDFANACIAVHLIGAYQVFCQPIFGFVEKWcnkrwpenkfitsehginvpcygvyhvnsFRLVWRTAYVIVSAVLAMIFPFFNDFVGligaasfwpltvyfPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLktykpfqavqee
Flexible Loop (DISEMBL)
mvavkrsncfhrhghhVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLkssppenksmkratavgVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Low Complexity Region (SEG)
MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAttltgttvgvDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Disordered region (IsUnstruct)
*******NCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD***************TAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKP*******
Disordered Region (DISOPRED)
**AVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ*****
Disordered Region (DISEMBL)
MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Disordered Region (DISPRO)
*VAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
P92934	481	Amino acid permease 6 OS=	yes	no	0.988	0.698	0.772	1e-151
Q42400	485	Amino acid permease 1 OS=	no	no	0.997	0.698	0.669	1e-140
O80592	475	Amino acid permease 8 OS=	no	no	0.985	0.705	0.635	1e-130
Q38967	493	Amino acid permease 2 OS=	no	no	0.985	0.679	0.537	1e-112
Q39134	476	Amino acid permease 3 OS=	no	no	0.985	0.703	0.550	1e-110
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.982	0.716	0.535	1e-109
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.988	0.7	0.507	1e-103
Q9FF99	467	Probable amino acid perme	no	no	0.938	0.683	0.490	4e-85
Q9FKS8	446	Lysine histidine transpor	no	no	0.811	0.618	0.304	2e-32
Q9LRB5	441	Lysine histidine transpor	no	no	0.820	0.632	0.323	6e-32

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  534 bits (1376), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/338 (77%), Positives = 297/338 (87%), Gaps = 2/338 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAVKRSNCFH++GH+VKC TSN P MIIFA IQI+LSQIPNFH LSWLSILAAVMSF Y
Sbjct: 143 MVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCY 202

Query: 61  SSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 119
           +SIG+GLSIAK  G G H  TTLTG TVG+DVS +EK+WR FQAIGD+AFAYA+STVL+E
Sbjct: 203 ASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIE 262

Query: 120 IQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPF 178
           IQDTLK+ PP ENK+MKRA+ VGV+TTT FY++CG +GY AFGNDAPGNFLTGFGFYEPF
Sbjct: 263 IQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPF 322

Query: 179 WLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVN 238
           WL+DFAN CIAVHLIGAYQVFCQPIF FVE    KRWP+NKFIT E+ I+VPC G + +N
Sbjct: 323 WLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSIN 382

Query: 239 SFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFT 298
             RLVWRT+YV+V+AV+AMIFPFFNDF+GLIGAASFWPLTVYFP+EM+IA+ KI +FSFT
Sbjct: 383 FLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFT 442

Query: 299 WVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
           W WLKIL W+CFIVSLVA  GSVQGLIQSLK +KPFQA
Sbjct: 443 WTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPFQA 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  498 bits (1281), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 227/339 (66%), Positives = 286/339 (84%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           +VAV +SNCFH  GH   C  SN P M +F  IQ++LSQIPNFHKLS+LSI+AAVMSF Y
Sbjct: 147 LVAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTY 206

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           ++IGIGL+IA V G     T++TGT VGVDV+A++K+WR+FQA+GD+AFAYA++TVL+EI
Sbjct: 207 ATIGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEI 266

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDTL+SSP ENK+MKRA+ VGV+TTT FYI+CG +GY AFGN+APG+FLT FGF+EPFWL
Sbjct: 267 QDTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWL 326

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
           +DFANACIAVHLIGAYQVF QPIF FVEK CN+ +P+NKFITSE+ +NVP  G ++++ F
Sbjct: 327 IDFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLF 386

Query: 241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
           RLVWRTAYV+++ V+AMIFPFFN  +GLIGAASFWPLTVYFPVEM+IA+TKI+++S  W+
Sbjct: 387 RLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWI 446

Query: 301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQE 339
            LK + + C IVSL+A  GS+ GLI S+KTYKPF+ + E
Sbjct: 447 ALKTMCYVCLIVSLLAAAGSIAGLISSVKTYKPFRTMHE 485

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  465 bits (1196), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 213/335 (63%), Positives = 270/335 (80%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           +VA+ +SNC+H  GH  KC  SN P M  F  +QI+LSQ+PNFHKLS+LSI+AAVMSF+Y
Sbjct: 138 LVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSY 197

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           +SIGIGL+IA V       T LTGT +GVDV+ASEKVW+ FQAIGD+AF+YAF+T+L+EI
Sbjct: 198 ASIGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEI 257

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDTL+SSPPENK MKRA+ VGV+TTT+FYI+CG +GY AFGN APG+FLT FGFYEP+WL
Sbjct: 258 QDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWL 317

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
           +DFANACIA+HLIGAYQV+ QP F FVE+ CNK+WP++ FI  E+   VP  G   VN F
Sbjct: 318 IDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLF 377

Query: 241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
           RLVWRT YV+++  +AMIFPFFN  +GL+GA +FWPLTVYFPV M+IA+ K++++S  W+
Sbjct: 378 RLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWL 437

Query: 301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ 335
            L +L+  C IVS +A VGS+ GLI S+K+YKPF+
Sbjct: 438 ALNLLVLVCLIVSALAAVGSIIGLINSVKSYKPFK 472

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 181/337 (53%), Positives = 258/337 (76%), Gaps = 2/337 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           M+A+KRSNCFH+ G    C+ S+NP MI+F   +I+LSQ+P+F ++ W+SI+AAVMSF Y
Sbjct: 156 MMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTY 215

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           S+IG+ L I +V  +G    +LTG ++G  V+ ++K+WR FQA+GD+AFAY++S VL+EI
Sbjct: 216 SAIGLALGIVQVAANGVFKGSLTGISIGT-VTQTQKIWRTFQALGDIAFAYSYSVVLIEI 274

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDT++S P E+K+MK+AT + +  TT+FY++CG MGY AFG+ APGN LTGFGFY PFWL
Sbjct: 275 QDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWL 334

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCY-GVYHVNS 239
           +D ANA I VHL+GAYQVF QPIF F+EK   +R+P+N F++ E  I +P +   Y VN 
Sbjct: 335 LDIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNV 394

Query: 240 FRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTW 299
           FR+V+R+ +V+ + V++M+ PFFND VG++GA  FWPLTVYFPVEMYI + K+ ++S  W
Sbjct: 395 FRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRW 454

Query: 300 VWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
           V L++L  +C ++S+VA VGS+ G++  LK YKPF++
Sbjct: 455 VCLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKS 491

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/336 (55%), Positives = 257/336 (76%), Gaps = 1/336 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           M+A+KRSNCFH+ G    C+ ++NP MI F  +QI+ SQIP+F +L WLSILAAVMSF Y
Sbjct: 140 MMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTY 199

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           SS G+ L IA+V+ +G    +LTG ++G  V+ ++K+WR FQA+GD+AFAY++S +L+EI
Sbjct: 200 SSAGLALGIAQVVVNGKVKGSLTGISIGA-VTETQKIWRTFQALGDIAFAYSYSIILIEI 258

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDT+KS P E K+MK+AT V V+ TT+FY++CG MGY AFG+ +PGN LTGFGFY P+WL
Sbjct: 259 QDTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWL 318

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
           +D ANA I +HLIGAYQV+CQP+F F+EK  + ++P+++FI  +  I +P +    +N F
Sbjct: 319 LDIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVF 378

Query: 241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
           RL+WRT +VI++ V++M+ PFFND VGL+GA  FWPLTVYFPVEMYIA+ KI R+S  WV
Sbjct: 379 RLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWV 438

Query: 301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
            L++    C +VS+ A  GS+ G++  LK+YKPF++
Sbjct: 439 CLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRS 474

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 180/336 (53%), Positives = 251/336 (74%), Gaps = 2/336 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           M+A+KRSNCFH  G    C+ S+NP MI+F   +I+LSQI +F ++ WLSI+AA+MSF Y
Sbjct: 129 MMAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTY 188

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           S+IG+ L I +V  +G    +LTG ++G  V+ ++K+WR FQA+GD+AFAY++S VL+EI
Sbjct: 189 SAIGLALGIIQVAANGVVKGSLTGISIGA-VTQTQKIWRTFQALGDIAFAYSYSVVLIEI 247

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDT++S P E+K+MK AT + +  TT FY++CG MGY AFG+ APGN LTGFGFY PFWL
Sbjct: 248 QDTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWL 307

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCY-GVYHVNS 239
           +D ANA I +HL+GAYQVF QPIF F+EK    R+P++  +T E+ I +P +   Y VN 
Sbjct: 308 LDVANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNV 367

Query: 240 FRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTW 299
           FR V+R+ +V+++ V++M+ PFFND VG++GA  FWPLTVYFPVEMYI + K+ R+S  W
Sbjct: 368 FRAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKW 427

Query: 300 VWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ 335
           V L++L   C +++LVA VGS+ G++  LK YKPF+
Sbjct: 428 VCLQMLSCGCLMITLVAGVGSIAGVMLDLKVYKPFK 463

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/341 (50%), Positives = 250/341 (73%), Gaps = 5/341 (1%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           +VA++R++C   +G +  C+ + N  MI F  +QI+ SQIP+F +L WLSI+AAVMSFAY
Sbjct: 138 LVAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAY 197

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGV-----DVSASEKVWRAFQAIGDVAFAYAFST 115
           S+IG+GL ++KV+ +     +LTG TVG       V++S+K+WR FQ++G++AFAY++S 
Sbjct: 198 SAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSM 257

Query: 116 VLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFY 175
           +L+EIQDT+KS P E  +M++AT V V  TT+FY++CG +GY AFG++APGN L   GF 
Sbjct: 258 ILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFR 317

Query: 176 EPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVY 235
            P+WL+D AN  I +HL+GAYQV+CQP+F FVEK  ++R+PE++F+T E  I +     +
Sbjct: 318 NPYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQLFPGKPF 377

Query: 236 HVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRF 295
           ++N FRLVWRT +V+ + +++M+ PFFND VGL+GA  FWPLTVYFPVEMYIA+  + R+
Sbjct: 378 NLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRW 437

Query: 296 SFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
              WV L++L  +C  VS+ A  GSV G++  LK YKPFQ+
Sbjct: 438 GTKWVCLQVLSVTCLFVSVAAAAGSVIGIVSDLKVYKPFQS 478

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  315 bits (806), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 161/328 (49%), Positives = 228/328 (69%), Gaps = 9/328 (2%)

Query: 3   AVKRSNCFHRHGHHVKCY--TSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           A+ +SNC+HR+GH+  C    +NN  M++F   QI +SQIPNFH + WLS++AA+MSF Y
Sbjct: 139 AIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTY 198

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDV-SASEKVWRAFQAIGDVAFAYAFSTVLVE 119
           S IGIGL++ K+I +      + G+  G+   +  EKVW  FQA+G++AF+Y FS +L+E
Sbjct: 199 SFIGIGLALGKIIEN----RKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLE 254

Query: 120 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW 179
           IQDTL+S P E ++MK+A+ V V   T F+  CG  GY AFG+  PGN LTGFGFYEPFW
Sbjct: 255 IQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFW 314

Query: 180 LVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCY--GVYHV 237
           LVDFANACI +HL+G YQV+ QPIF   E+   K++PENKFI   +G  +P        +
Sbjct: 315 LVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRL 374

Query: 238 NSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSF 297
           N  R+  RT YV+++  +A++FP+FN+ +G++GA +FWPL VYFPVEM I + KIR ++ 
Sbjct: 375 NPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTR 434

Query: 298 TWVWLKILIWSCFIVSLVALVGSVQGLI 325
            W+ L+   + C +V L++LVGS+ GL+
Sbjct: 435 PWLLLRGFSFVCLLVCLLSLVGSIYGLV 462

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 146/312 (46%), Gaps = 36/312 (11%)

Query: 27  MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 86
           ++IFA +  VLS +PNF+ +S +S+ AAVMS +YS+I    S +K + +         TT
Sbjct: 162 IMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTT 221

Query: 87  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTT 144
            G        V+  F  +GDVAFAYA   V++EIQ T+ S+P  P    M R   V    
Sbjct: 222 AGT-------VFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIV 274

Query: 145 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 204
             L Y    ++GY  FGN    N L      +P WL+  AN  + +H+IG+YQ++  P+F
Sbjct: 275 VALCYFPVALVGYYIFGNGVEDNILMSLK--KPAWLIATANIFVVIHVIGSYQIYAMPVF 332

Query: 205 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFND 264
             +E    K+                        + R   R  YV  +  + M FPFF  
Sbjct: 333 DMMETLLVKK-----------------LNFRPTTTLRFFVRNFYVAATMFVGMTFPFFGG 375

Query: 265 FVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALV----GS 320
            +   G  +F P T + P  +++A  K +++S +W W     W C +  L  +V    G 
Sbjct: 376 LLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSW-WAN---WVCIVFGLFLMVLSPIGG 431

Query: 321 VQGLIQSLKTYK 332
           ++ ++   K YK
Sbjct: 432 LRTIVIQAKGYK 443

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 154/315 (48%), Gaps = 36/315 (11%)

Query: 27  MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 86
           ++IFA +  V+S +PNF+ +S +S+ AAVMS  YS+I    S+ K +      +    T 
Sbjct: 157 IMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGVHPDVDYSPRASTD 216

Query: 87  VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTT 144
           VG       KV+    A+GDVAFAYA   V++EIQ T+ S+P  P    M R   V    
Sbjct: 217 VG-------KVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIV 269

Query: 145 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 204
             + Y     +GY  FGN    N L      +P WL+  AN  + +H+IG+YQ+F  P+F
Sbjct: 270 VAICYFPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVF 327

Query: 205 GFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIFPFFND 264
             +E    K+   N           P +        R + R+ YV  + ++A+  PFF  
Sbjct: 328 DMLETVLVKKMNFN-----------PSF------KLRFITRSLYVAFTMIVAICVPFFGG 370

Query: 265 FVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIV----SLVALVGS 320
            +G  G  +F P T Y P  M++   K +RF  +W       W C IV    +++A +G 
Sbjct: 371 LLGFFGGFAFAPTTYYLPCIMWLVLKKPKRFGLSWT----ANWFCIIVGVLLTILAPIGG 426

Query: 321 VQGLIQSLKTYKPFQ 335
           ++ +I + KTYK F 
Sbjct: 427 LRTIIINAKTYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
284519840	483	amino acid permease 6 [Populus tremula x	0.994	0.699	0.769	1e-158
255537896	484	amino acid transporter, putative [Ricinu	0.994	0.698	0.757	1e-157
31455393	481	amino acid permease 6 [Brassica napus]	0.994	0.702	0.770	1e-156
225458966	483	PREDICTED: amino acid permease 6 [Vitis	0.994	0.699	0.748	1e-155
363814354	479	uncharacterized protein LOC100777963 [Gl	0.994	0.705	0.746	1e-155
356515653	479	PREDICTED: amino acid permease 6-like [G	0.994	0.705	0.737	1e-154
224063403	488	amino acid permease [Populus trichocarpa	0.994	0.692	0.750	1e-153
449436914	477	PREDICTED: amino acid permease 6-like [C	0.988	0.704	0.729	1e-152
357436349	472	Amino acid transporter [Medicago truncat	0.994	0.716	0.716	1e-151
357466761	482	Amino acid permease [Medicago truncatula	0.994	0.701	0.716	1e-150

>gi|284519840|gb|ADB92670.1| amino acid permease 6 [Populus tremula x Populus alba]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 260/338 (76%), Positives = 300/338 (88%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAV+RSNCFH+HGH VKC TSNNP MIIFACIQI+LSQIPNFHKLSWLSILAAVMSFAY
Sbjct: 146 MVAVRRSNCFHKHGHAVKCQTSNNPYMIIFACIQIMLSQIPNFHKLSWLSILAAVMSFAY 205

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           SSIG+GLS+AKVIG     T+LTG TVGVDVSA +KVWR FQA+GD+AFAYA+STVL+EI
Sbjct: 206 SSIGLGLSLAKVIGGAHARTSLTGVTVGVDVSAEQKVWRTFQALGDIAFAYAYSTVLIEI 265

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDTLKSSPPENK+MKRA+ VG+ TTT FYI+CG +GY AFGNDAPGNFLTGFGFYEPFWL
Sbjct: 266 QDTLKSSPPENKAMKRASFVGILTTTTFYILCGCLGYAAFGNDAPGNFLTGFGFYEPFWL 325

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
           +D ANACIA+HLIGAYQVFCQPIF FVE  C++RWP++KF+T EH IN+P YGVY++N F
Sbjct: 326 IDLANACIAIHLIGAYQVFCQPIFSFVESRCHRRWPDSKFMTREHAINIPFYGVYYLNLF 385

Query: 241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
           RLVWRT YVIV+AVLAMI PFFNDF+ L+GA SFWPLTVYFP+EMY+AR+K+ +FSF W 
Sbjct: 386 RLVWRTLYVIVTAVLAMILPFFNDFLALLGAISFWPLTVYFPIEMYMARSKMPKFSFRWT 445

Query: 301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
            LK+L W+C  VSLV+  GSV+GLIQ+LKTYKPF+A Q
Sbjct: 446 SLKMLSWACLAVSLVSAAGSVEGLIQALKTYKPFKAQQ 483

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537896|ref|XP_002510013.1| amino acid transporter, putative [Ricinus communis] gi|223550714|gb|EEF52200.1| amino acid transporter, putative [Ricinus communis]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 256/338 (75%), Positives = 303/338 (89%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAVKRSNCFHRHGH  KC+TSNNP MIIFACIQI+LSQIPNFHKLSWLS+LAAVMSFAY
Sbjct: 147 MVAVKRSNCFHRHGHAAKCHTSNNPYMIIFACIQIILSQIPNFHKLSWLSVLAAVMSFAY 206

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           SSIG+GLSIAKV G     T++TGTTVGVDV+A++K+WRAFQ+IGD+AFAYA+STVL+EI
Sbjct: 207 SSIGLGLSIAKVAGGEHVRTSITGTTVGVDVTAAQKIWRAFQSIGDIAFAYAYSTVLIEI 266

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDT+KS PPENK+MK+A+ VG+ TTT+FYI+CG +GY AFGNDAPGNFLTGFGFYEPFWL
Sbjct: 267 QDTIKSGPPENKAMKKASFVGIVTTTMFYILCGCIGYAAFGNDAPGNFLTGFGFYEPFWL 326

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
           +D AN CIA+HLIGAYQVFCQPIF F+EK   +RWPENKFIT+E+ IN+P  GVY++++F
Sbjct: 327 IDIANVCIAIHLIGAYQVFCQPIFSFMEKNSRQRWPENKFITTEYAINIPFLGVYYLSTF 386

Query: 241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
           RLVWRT YVIV+A++AMI PFFNDF+GLIGAA+FWPLTVYFP+EMYI RT+I +FS TW+
Sbjct: 387 RLVWRTLYVIVTAIVAMILPFFNDFLGLIGAAAFWPLTVYFPIEMYITRTRIPKFSSTWI 446

Query: 301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
           WLKIL  +C +VSL+A  GSV+GLI SLKTYKPFQ+ Q
Sbjct: 447 WLKILTLACLVVSLLAAAGSVEGLINSLKTYKPFQSEQ 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31455393|emb|CAD92450.1| amino acid permease 6 [Brassica napus]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 262/340 (77%), Positives = 303/340 (89%), Gaps = 2/340 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAVKRSNCFH++GH+VKC TSN P MIIFACIQIVLSQIPNFH LSWLSILAAVMSF+Y
Sbjct: 142 MVAVKRSNCFHKNGHNVKCSTSNTPFMIIFACIQIVLSQIPNFHNLSWLSILAAVMSFSY 201

Query: 61  SSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 119
           +SIGIGLSIAKV G G HA T LTG TVGVDV+ SEKVWR FQA+GD+AFAYA+STVL+E
Sbjct: 202 ASIGIGLSIAKVAGGGVHARTALTGVTVGVDVTGSEKVWRTFQAVGDIAFAYAYSTVLIE 261

Query: 120 IQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPF 178
           IQDTLK+SPP ENK+MKRA+ VGV+TTT FY++CG +GY AFGN+APGNFLTGFGFYEPF
Sbjct: 262 IQDTLKASPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNNAPGNFLTGFGFYEPF 321

Query: 179 WLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVN 238
           WL+DFAN CIAVHL+GAYQVFCQPIF FVE    KRWP+NKFIT E+ +NVPC G + ++
Sbjct: 322 WLIDFANVCIAVHLVGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKMNVPCGGDFGIS 381

Query: 239 SFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFT 298
            FRLVWRT+YV+V+AV+AMIFPFFNDF+GLIGAASFWPLTVYFP+EM+IA+  +++FSFT
Sbjct: 382 LFRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKNMKKFSFT 441

Query: 299 WVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
           W WLKIL W+CF+VSLVA  GSVQGLIQSLK +KPFQA +
Sbjct: 442 WTWLKILSWACFLVSLVAAAGSVQGLIQSLKDFKPFQAPE 481

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458966|ref|XP_002285557.1| PREDICTED: amino acid permease 6 [Vitis vinifera] gi|302142129|emb|CBI19332.3| unnamed protein product [Vitis vinifera]

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 253/338 (74%), Positives = 300/338 (88%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAV+RSNC+H+HGH  KC  S+ P MIIFACIQIVLSQIPNFHKLSWLSILAAVMSF+Y
Sbjct: 146 MVAVRRSNCYHKHGHQAKCNPSDYPYMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFSY 205

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           +SIGIGLSIA+V G     TTLTG TVGVD+S+SEKVWR F++IG++AFAYA+STVLVEI
Sbjct: 206 ASIGIGLSIARVAGGAHARTTLTGRTVGVDLSSSEKVWRTFESIGNIAFAYAYSTVLVEI 265

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDTLKSSPPENK MK+AT  G++TT+LFY++CG +GY AFGNDAPGNFLTGFGF+EPFWL
Sbjct: 266 QDTLKSSPPENKVMKKATFAGISTTSLFYVLCGCVGYAAFGNDAPGNFLTGFGFFEPFWL 325

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
           +D AN  IA+HLIGAYQVFCQP+FGFVEKWCNKRWPE+KFIT+EH I+VP YG+Y++N F
Sbjct: 326 IDLANVFIAIHLIGAYQVFCQPVFGFVEKWCNKRWPESKFITTEHCIDVPLYGIYYLNLF 385

Query: 241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
           RLVWRT YVIV+AVLAM+FPFFN+ +G +GAASFWPLTVYFP+EM+IARTKI +FSFTW 
Sbjct: 386 RLVWRTVYVIVTAVLAMLFPFFNEVMGFLGAASFWPLTVYFPIEMHIARTKIPKFSFTWT 445

Query: 301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
           WLKIL W+C +VS+VA  GS+QGLI+ ++ YKPFQ  +
Sbjct: 446 WLKILSWTCLMVSVVAAAGSIQGLIKEIEKYKPFQTQE 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814354|ref|NP_001242816.1| uncharacterized protein LOC100777963 [Glycine max] gi|255642183|gb|ACU21356.1| unknown [Glycine max]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 253/339 (74%), Positives = 296/339 (87%), Gaps = 1/339 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAVKRSNCFH+HGHHVKCYTSNNP MI+FACIQIVLSQIPNFHKL WLSI+AAVMSFAY
Sbjct: 141 MVAVKRSNCFHKHGHHVKCYTSNNPFMILFACIQIVLSQIPNFHKLWWLSIVAAVMSFAY 200

Query: 61  SSIGIGLSIAKVIGDG-PHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 119
           SSIG+GLS+AKV G G P  TTLTG  VGVDV+ SEKVWR FQAIGD+AFAYA+S VL+E
Sbjct: 201 SSIGLGLSVAKVAGGGEPVRTTLTGVQVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIE 260

Query: 120 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW 179
           IQDTLKSSPPENK MKRA+ +G+ TTTLFY++CG +GY AFGNDAPGNFLTGFGFYEPFW
Sbjct: 261 IQDTLKSSPPENKVMKRASLIGILTTTLFYVLCGCLGYAAFGNDAPGNFLTGFGFYEPFW 320

Query: 180 LVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNS 239
           L+DFAN CIAVHL+GAYQVFCQPIFGFVE W  +RWP ++F+  EH +N P  G + VN 
Sbjct: 321 LIDFANICIAVHLVGAYQVFCQPIFGFVENWGRERWPNSQFVNGEHALNFPLCGTFPVNF 380

Query: 240 FRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTW 299
           FR+VWRT YVI++A++AM+FPFFNDF+GLIG+ SFWPLTVYFP+EMYI ++K++RFSFTW
Sbjct: 381 FRVVWRTTYVIITALIAMMFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQRFSFTW 440

Query: 300 VWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
            WLKIL W+C IVS+++  GS+QGL Q LK Y+PF+A Q
Sbjct: 441 TWLKILSWACLIVSIISAAGSIQGLAQDLKKYQPFKAQQ 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515653|ref|XP_003526513.1| PREDICTED: amino acid permease 6-like [Glycine max]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 250/339 (73%), Positives = 294/339 (86%), Gaps = 1/339 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAVKRSNCFH+HGHH KCYTSNNP MI+FACIQIVLSQIPNFHKL WLSI+AAVMSFAY
Sbjct: 141 MVAVKRSNCFHKHGHHDKCYTSNNPFMILFACIQIVLSQIPNFHKLWWLSIVAAVMSFAY 200

Query: 61  SSIGIGLSIAKVIGDG-PHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 119
           SSIG+GLS+AKV G G P  TTLTG  VGVDV+ SEKVWR FQAIGD+AFAYA+S VL+E
Sbjct: 201 SSIGLGLSVAKVAGGGEPVRTTLTGVQVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIE 260

Query: 120 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW 179
           IQDTLKSSPPENK MKRA+ +G+ TTTLFY++CG +GY AFGNDAPGNFLTGFGFYEPFW
Sbjct: 261 IQDTLKSSPPENKVMKRASLIGILTTTLFYVLCGCLGYAAFGNDAPGNFLTGFGFYEPFW 320

Query: 180 LVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNS 239
           L+DFAN CIAVHL+GAYQVFCQPIFGFVE W  +RWP + F+  EH +  P +G + VN 
Sbjct: 321 LIDFANICIAVHLVGAYQVFCQPIFGFVENWGKERWPNSHFVNGEHALKFPLFGTFPVNF 380

Query: 240 FRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTW 299
           FR+VWRT YVI++A++AM+FPFFNDF+GLIG+ SFWPLTVYFP+EMYI ++K+++FSFTW
Sbjct: 381 FRVVWRTTYVIITALIAMMFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQKFSFTW 440

Query: 300 VWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
            WLKIL W+C IVS+++  GS+QGL Q LK Y+PF+A Q
Sbjct: 441 TWLKILSWACLIVSIISAAGSIQGLAQDLKKYQPFKAQQ 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063403|ref|XP_002301129.1| amino acid permease [Populus trichocarpa] gi|222842855|gb|EEE80402.1| amino acid permease [Populus trichocarpa]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/341 (75%), Positives = 297/341 (87%), Gaps = 3/341 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAV+RSNCFH+HGH VKC TSNNP MIIFACIQI+LSQIPNFHKLSWLSILAAVMSFAY
Sbjct: 148 MVAVRRSNCFHKHGHAVKCQTSNNPYMIIFACIQIMLSQIPNFHKLSWLSILAAVMSFAY 207

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           +SIG+GLS+AKVIG     T+LTG TVGVDVSA +KVWR FQA+GD+AFAYA+ST+ + +
Sbjct: 208 ASIGLGLSLAKVIGGAHARTSLTGVTVGVDVSAQQKVWRTFQALGDIAFAYAYSTLNLTV 267

Query: 121 Q---DTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEP 177
           +   DTLKSSPPENK+MKRA+ VG+ TTT FYI+CG +GY AFGNDAPGNFLTGFGFYEP
Sbjct: 268 ELRDDTLKSSPPENKAMKRASFVGILTTTTFYILCGCLGYAAFGNDAPGNFLTGFGFYEP 327

Query: 178 FWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHV 237
           F L+D AN CIA+HLIGAYQVFCQPIF FVE  C++RWP++KFITSEH IN+P YGVY++
Sbjct: 328 FVLIDIANVCIAIHLIGAYQVFCQPIFSFVESRCHRRWPDSKFITSEHAINIPFYGVYYL 387

Query: 238 NSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSF 297
           N FRLVWRT YVIV+AVLAMI PFFNDF+ L+GA SFWPLTVYFPVEMY+ARTK+ +FSF
Sbjct: 388 NLFRLVWRTLYVIVTAVLAMILPFFNDFLALLGAISFWPLTVYFPVEMYMARTKMPKFSF 447

Query: 298 TWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
            W  LK+L W+C  VSLV+  GSV+GLIQ+LKTYKPF+A Q
Sbjct: 448 RWTSLKMLSWACLAVSLVSAAGSVEGLIQALKTYKPFKAQQ 488

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436914|ref|XP_004136237.1| PREDICTED: amino acid permease 6-like [Cucumis sativus] gi|449522221|ref|XP_004168126.1| PREDICTED: amino acid permease 6-like [Cucumis sativus]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 245/336 (72%), Positives = 297/336 (88%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAVKRSNCFH++GH   C  S  P MII+A IQ++LSQIPNFHKLS+LSI+AAVMSFAY
Sbjct: 142 MVAVKRSNCFHKYGHEADCNPSQYPFMIIYAAIQLILSQIPNFHKLSFLSIIAAVMSFAY 201

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
           ++IG+GLSIA+V+GDG   TTLTG T+GVDV+  EK+++AFQA+GD+AFAY++S VLVEI
Sbjct: 202 AAIGVGLSIARVVGDGHARTTLTGATIGVDVTGQEKIFKAFQALGDIAFAYSYSMVLVEI 261

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           QDTL+SSP ENK+MK+A+ VG+TTT+LFYI+CG +GY AFGNDAPGNFLTGFGFYEPFWL
Sbjct: 262 QDTLRSSPAENKAMKKASFVGITTTSLFYILCGCVGYAAFGNDAPGNFLTGFGFYEPFWL 321

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
           +DFAN CI VHLIGAYQVFCQP +GFVEKWCNK+WPE+ FIT+EH IN+P  G Y +N F
Sbjct: 322 IDFANVCIVVHLIGAYQVFCQPFYGFVEKWCNKKWPESTFITTEHTINLPFNGEYQLNYF 381

Query: 241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
           RL+WRT YVI++AV+AMIFPFFNDF+GLIGAASFWPLTVYFPVEMYIARTK+ RFS TW+
Sbjct: 382 RLIWRTIYVILTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWI 441

Query: 301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
           WLK L W+C ++SL+A VGS+QGL Q +KTY+PF++
Sbjct: 442 WLKTLSWACLVISLIAAVGSLQGLAQDVKTYRPFKS 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436349|ref|XP_003588450.1| Amino acid transporter [Medicago truncatula] gi|355477498|gb|AES58701.1| Amino acid transporter [Medicago truncatula]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 243/339 (71%), Positives = 293/339 (86%), Gaps = 1/339 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAV+RSNCFH+HGH  KCY SNNP MIIFACIQIVL QIPNFH+LSWLSI+AAVMSFAY
Sbjct: 134 MVAVQRSNCFHKHGHQDKCYVSNNPFMIIFACIQIVLCQIPNFHELSWLSIVAAVMSFAY 193

Query: 61  SSIGIGLSIAKVIGDGPHATT-LTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 119
           SSIG+GLS+AKV G G H TT LTG  +GVDV+A+EKVWR FQAIGD+AFAYAFS VL+E
Sbjct: 194 SSIGLGLSVAKVAGGGNHVTTSLTGVQIGVDVTATEKVWRMFQAIGDIAFAYAFSNVLIE 253

Query: 120 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW 179
           IQDTLKSSPPEN+ MKRA+ +G+ TTTLFY++CG +GY AFGNDAPGNFLTGFGFYEPFW
Sbjct: 254 IQDTLKSSPPENRVMKRASLIGILTTTLFYVLCGTLGYAAFGNDAPGNFLTGFGFYEPFW 313

Query: 180 LVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNS 239
           L+DFAN CIAVHLIGAYQVF QPIFGFVE    ++WP++KF+  EH +N+P YG Y+VN 
Sbjct: 314 LIDFANVCIAVHLIGAYQVFVQPIFGFVEGQSKQKWPDSKFVNGEHAMNIPLYGSYNVNY 373

Query: 240 FRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTW 299
           FR++WR+ YVI++A++AM+FPFFNDF+GLIG+ SF+PLTVYFP+EMYI +T + ++SFTW
Sbjct: 374 FRVIWRSCYVIITAIIAMLFPFFNDFLGLIGSLSFYPLTVYFPIEMYIKKTNMPKYSFTW 433

Query: 300 VWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
            WLKIL W C ++S+++  GS+QGL  SLKTYKPF+  Q
Sbjct: 434 TWLKILSWLCLVISIISAAGSIQGLATSLKTYKPFRGEQ 472

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466761|ref|XP_003603665.1| Amino acid permease [Medicago truncatula] gi|355492713|gb|AES73916.1| Amino acid permease [Medicago truncatula]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 243/339 (71%), Positives = 290/339 (85%), Gaps = 1/339 (0%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           MVAVKRSNC+H+ GH  KCY SNNP MIIFACIQIVLSQIPNFHKLSWLSI+AAVMSFAY
Sbjct: 144 MVAVKRSNCYHKQGHDAKCYISNNPFMIIFACIQIVLSQIPNFHKLSWLSIVAAVMSFAY 203

Query: 61  SSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 119
           SSIG+GLSIAKV G GP   T+LTG  VGVDV+ +EKVWR FQAIGD+AFAYA+S VL+E
Sbjct: 204 SSIGLGLSIAKVAGRGPAVRTSLTGVQVGVDVTGTEKVWRMFQAIGDIAFAYAYSNVLIE 263

Query: 120 IQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW 179
           IQDTLKSSPPEN+ MKRA+ +G+ TTT+FY++CG +GY AFGNDAPGNFLTGFGFYEPFW
Sbjct: 264 IQDTLKSSPPENQVMKRASLIGILTTTMFYMLCGCLGYAAFGNDAPGNFLTGFGFYEPFW 323

Query: 180 LVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNS 239
           L+D AN  IAVHLIGAYQVFCQPIFGFVE    ++W  ++F+  EH +N+P  G  HVN 
Sbjct: 324 LIDLANIFIAVHLIGAYQVFCQPIFGFVESKSKEKWSNSQFVNGEHAVNIPLCGTLHVNF 383

Query: 240 FRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTW 299
           FR+VWRTAYV+++A++AMIFPFFNDF+GLIG+ SFWPLTVYFP+EMYI ++K++RFSFTW
Sbjct: 384 FRVVWRTAYVVITALIAMIFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQRFSFTW 443

Query: 300 VWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQ 338
            W+KIL W+C IVS+++  GS+QGL   LK Y+PF+A Q
Sbjct: 444 TWMKILSWACLIVSIISAAGSIQGLAHDLKKYQPFKAQQ 482

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.988	0.698	0.748	8.9e-141
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.997	0.698	0.648	3.9e-124
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.985	0.705	0.614	9.1e-116
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.985	0.703	0.538	2.9e-103
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.985	0.679	0.525	1.1e-101
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.982	0.716	0.523	3.9e-99
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.988	0.7	0.492	5.5e-93
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.941	0.685	0.492	3.7e-87
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.508	0.392	0.385	5.2e-43
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.508	0.392	0.369	5.2e-41

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1377 (489.8 bits), Expect = 8.9e-141, P = 8.9e-141
 Identities = 253/338 (74%), Positives = 288/338 (85%)

Query:     1 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
             MVAVKRSNCFH++GH+VKC TSN P MIIFA IQI+LSQIPNFH LSWLSILAAVMSF Y
Sbjct:   143 MVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCY 202

Query:    61 SSIGIGLSIAKVIGDGPHAXXXXXXXXXX-DVSASEKVWRAFQAIGDVAFAYAFSTVLVE 119
             +SIG+GLSIAK  G G H            DVS +EK+WR FQAIGD+AFAYA+STVL+E
Sbjct:   203 ASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIE 262

Query:   120 IQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPF 178
             IQDTLK+ PP ENK+MKRA+ VGV+TTT FY++CG +GY AFGNDAPGNFLTGFGFYEPF
Sbjct:   263 IQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPF 322

Query:   179 WLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVN 238
             WL+DFAN CIAVHLIGAYQVFCQPIF FVE    KRWP+NKFIT E+ I+VPC G + +N
Sbjct:   323 WLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSIN 382

Query:   239 SFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFT 298
               RLVWRT+YV+V+AV+AMIFPFFNDF+GLIGAASFWPLTVYFP+EM+IA+ KI +FSFT
Sbjct:   383 FLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFT 442

Query:   299 WVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
             W WLKIL W+CFIVSLVA  GSVQGLIQSLK +KPFQA
Sbjct:   443 WTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPFQA 480

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
 Identities = 220/339 (64%), Positives = 277/339 (81%)

Query:     1 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
             +VAV +SNCFH  GH   C  SN P M +F  IQ++LSQIPNFHKLS+LSI+AAVMSF Y
Sbjct:   147 LVAVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTY 206

Query:    61 SSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
             ++IGIGL+IA V G               DV+A++K+WR+FQA+GD+AFAYA++TVL+EI
Sbjct:   207 ATIGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEI 266

Query:   121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
             QDTL+SSP ENK+MKRA+ VGV+TTT FYI+CG +GY AFGN+APG+FLT FGF+EPFWL
Sbjct:   267 QDTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWL 326

Query:   181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
             +DFANACIAVHLIGAYQVF QPIF FVEK CN+ +P+NKFITSE+ +NVP  G ++++ F
Sbjct:   327 IDFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLF 386

Query:   241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
             RLVWRTAYV+++ V+AMIFPFFN  +GLIGAASFWPLTVYFPVEM+IA+TKI+++S  W+
Sbjct:   387 RLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWI 446

Query:   301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQAVQE 339
              LK + + C IVSL+A  GS+ GLI S+KTYKPF+ + E
Sbjct:   447 ALKTMCYVCLIVSLLAAAGSIAGLISSVKTYKPFRTMHE 485

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 206/335 (61%), Positives = 262/335 (78%)

Query:     1 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
             +VA+ +SNC+H  GH  KC  SN P M  F  +QI+LSQ+PNFHKLS+LSI+AAVMSF+Y
Sbjct:   138 LVAIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSY 197

Query:    61 SSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
             +SIGIGL+IA V                 DV+ASEKVW+ FQAIGD+AF+YAF+T+L+EI
Sbjct:   198 ASIGIGLAIATVASGKIGKTELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEI 257

Query:   121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
             QDTL+SSPPENK MKRA+ VGV+TTT+FYI+CG +GY AFGN APG+FLT FGFYEP+WL
Sbjct:   258 QDTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWL 317

Query:   181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
             +DFANACIA+HLIGAYQV+ QP F FVE+ CNK+WP++ FI  E+   VP  G   VN F
Sbjct:   318 IDFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLF 377

Query:   241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
             RLVWRT YV+++  +AMIFPFFN  +GL+GA +FWPLTVYFPV M+IA+ K++++S  W+
Sbjct:   378 RLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWL 437

Query:   301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ 335
              L +L+  C IVS +A VGS+ GLI S+K+YKPF+
Sbjct:   438 ALNLLVLVCLIVSALAAVGSIIGLINSVKSYKPFK 472

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 181/336 (53%), Positives = 250/336 (74%)

Query:     1 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
             M+A+KRSNCFH+ G    C+ ++NP MI F  +QI+ SQIP+F +L WLSILAAVMSF Y
Sbjct:   140 MMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTY 199

Query:    61 SSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
             SS G+ L IA+V+ +G              V+ ++K+WR FQA+GD+AFAY++S +L+EI
Sbjct:   200 SSAGLALGIAQVVVNGK-VKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEI 258

Query:   121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
             QDT+KS P E K+MK+AT V V+ TT+FY++CG MGY AFG+ +PGN LTGFGFY P+WL
Sbjct:   259 QDTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWL 318

Query:   181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
             +D ANA I +HLIGAYQV+CQP+F F+EK  + ++P+++FI  +  I +P +    +N F
Sbjct:   319 LDIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVF 378

Query:   241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
             RL+WRT +VI++ V++M+ PFFND VGL+GA  FWPLTVYFPVEMYIA+ KI R+S  WV
Sbjct:   379 RLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWV 438

Query:   301 WLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
              L++    C +VS+ A  GS+ G++  LK+YKPF++
Sbjct:   439 CLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRS 474

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 177/337 (52%), Positives = 251/337 (74%)

Query:     1 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
             M+A+KRSNCFH+ G    C+ S+NP MI+F   +I+LSQ+P+F ++ W+SI+AAVMSF Y
Sbjct:   156 MMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTY 215

Query:    61 SSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
             S+IG+ L I +V  +G              V+ ++K+WR FQA+GD+AFAY++S VL+EI
Sbjct:   216 SAIGLALGIVQVAANGVFKGSLTGISIGT-VTQTQKIWRTFQALGDIAFAYSYSVVLIEI 274

Query:   121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
             QDT++S P E+K+MK+AT + +  TT+FY++CG MGY AFG+ APGN LTGFGFY PFWL
Sbjct:   275 QDTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWL 334

Query:   181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCY-GVYHVNS 239
             +D ANA I VHL+GAYQVF QPIF F+EK   +R+P+N F++ E  I +P +   Y VN 
Sbjct:   335 LDIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNV 394

Query:   240 FRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTW 299
             FR+V+R+ +V+ + V++M+ PFFND VG++GA  FWPLTVYFPVEMYI + K+ ++S  W
Sbjct:   395 FRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRW 454

Query:   300 VWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
             V L++L  +C ++S+VA VGS+ G++  LK YKPF++
Sbjct:   455 VCLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKS 491

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 176/336 (52%), Positives = 244/336 (72%)

Query:     1 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
             M+A+KRSNCFH  G    C+ S+NP MI+F   +I+LSQI +F ++ WLSI+AA+MSF Y
Sbjct:   129 MMAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTY 188

Query:    61 SSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
             S+IG+ L I +V  +G              V+ ++K+WR FQA+GD+AFAY++S VL+EI
Sbjct:   189 SAIGLALGIIQVAANGV-VKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEI 247

Query:   121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
             QDT++S P E+K+MK AT + +  TT FY++CG MGY AFG+ APGN LTGFGFY PFWL
Sbjct:   248 QDTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWL 307

Query:   181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCY-GVYHVNS 239
             +D ANA I +HL+GAYQVF QPIF F+EK    R+P++  +T E+ I +P +   Y VN 
Sbjct:   308 LDVANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNV 367

Query:   240 FRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTW 299
             FR V+R+ +V+++ V++M+ PFFND VG++GA  FWPLTVYFPVEMYI + K+ R+S  W
Sbjct:   368 FRAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKW 427

Query:   300 VWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQ 335
             V L++L   C +++LVA VGS+ G++  LK YKPF+
Sbjct:   428 VCLQMLSCGCLMITLVAGVGSIAGVMLDLKVYKPFK 463

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 168/341 (49%), Positives = 244/341 (71%)

Query:     1 MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
             +VA++R++C   +G +  C+ + N  MI F  +QI+ SQIP+F +L WLSI+AAVMSFAY
Sbjct:   138 LVAIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAY 197

Query:    61 SSIGIGLSIAKVIGD----GP-HAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFST 115
             S+IG+GL ++KV+ +    G               V++S+K+WR FQ++G++AFAY++S 
Sbjct:   198 SAIGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSM 257

Query:   116 VLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFY 175
             +L+EIQDT+KS P E  +M++AT V V  TT+FY++CG +GY AFG++APGN L   GF 
Sbjct:   258 ILIEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFR 317

Query:   176 EPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVY 235
              P+WL+D AN  I +HL+GAYQV+CQP+F FVEK  ++R+PE++F+T E  I +     +
Sbjct:   318 NPYWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQLFPGKPF 377

Query:   236 HVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRF 295
             ++N FRLVWRT +V+ + +++M+ PFFND VGL+GA  FWPLTVYFPVEMYIA+  + R+
Sbjct:   378 NLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRW 437

Query:   296 SFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKPFQA 336
                WV L++L  +C  VS+ A  GSV G++  LK YKPFQ+
Sbjct:   438 GTKWVCLQVLSVTCLFVSVAAAAGSVIGIVSDLKVYKPFQS 478

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 161/327 (49%), Positives = 225/327 (68%)

Query:     3 AVKRSNCFHRHGHHVKC-Y-TSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
             A+ +SNC+HR+GH+  C Y  +NN  M++F   QI +SQIPNFH + WLS++AA+MSF Y
Sbjct:   139 AIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTY 198

Query:    61 SSIGIGLSIAKVIGDGPHAXXXXXXXXXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
             S IGIGL++ K+I    +             +  EKVW  FQA+G++AF+Y FS +L+EI
Sbjct:   199 SFIGIGLALGKII---ENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEI 255

Query:   121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
             QDTL+S P E ++MK+A+ V V   T F+  CG  GY AFG+  PGN LTGFGFYEPFWL
Sbjct:   256 QDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWL 315

Query:   181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCY-G-VYHVN 238
             VDFANACI +HL+G YQV+ QPIF   E+   K++PENKFI   +G  +P   G    +N
Sbjct:   316 VDFANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLN 375

Query:   239 SFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFT 298
               R+  RT YV+++  +A++FP+FN+ +G++GA +FWPL VYFPVEM I + KIR ++  
Sbjct:   376 PMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRP 435

Query:   299 WVWLKILIWSCFIVSLVALVGSVQGLI 325
             W+ L+   + C +V L++LVGS+ GL+
Sbjct:   436 WLLLRGFSFVCLLVCLLSLVGSIYGLV 462

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 314 (115.6 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 71/184 (38%), Positives = 103/184 (55%)

Query:    27 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 86
             ++IFA +  VLSQ+PNF+ +S +S+ AAVMS +YS+I  G S+ K    G  A       
Sbjct:   157 IMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGASVDK----GKVADVDYHLR 212

Query:    87 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTT 144
                  +++ KV+  F A+GDVAFAYA   V++EIQ T+ S+P  P  K M +   V    
Sbjct:   213 AT---TSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYII 269

Query:   145 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 204
               L Y    ++GY AFGN    N L       P WL+  AN  + +H+IG+YQ++  P+F
Sbjct:   270 VALCYFPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVF 327

Query:   205 GFVE 208
               +E
Sbjct:   328 DMIE 331

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 68/184 (36%), Positives = 96/184 (52%)

Query:    27 MIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXX 86
             ++IFA +  V+S +PNF+ +S +S+ AAVMS  YS+I    S+ K    G H        
Sbjct:   157 IMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHK----GVHPDVDYSPR 212

Query:    87 XXXDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSP--PENKSMKRATAVGVTT 144
                DV    KV+    A+GDVAFAYA   V++EIQ T+ S+P  P    M R   V    
Sbjct:   213 ASTDVG---KVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIV 269

Query:   145 TTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIF 204
               + Y     +GY  FGN    N L      +P WL+  AN  + +H+IG+YQ+F  P+F
Sbjct:   270 VAICYFPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVF 327

Query:   205 GFVE 208
               +E
Sbjct:   328 DMLE 331

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P92934	AAP6_ARATH	No assigned EC number	0.7721	0.9882	0.6985	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	9e-73

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  230 bits (589), Expect = 9e-73
 Identities = 97/327 (29%), Positives = 148/327 (45%), Gaps = 32/327 (9%)

Query: 1   MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY 60
           + A+  S     H        S    +IIF  I I LS IPN   LS LS++AAV S  Y
Sbjct: 111 LPAIFDSFFDTCH-------ISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-Y 162

Query: 61  SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 120
             I +       +               +    + K+ R F AIG + FA+    VL+ I
Sbjct: 163 IVILVLSVAELGVLTAQ-------GVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPI 215

Query: 121 QDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL 180
           Q+T+KS P + K+M +     +   T+ YI+ G++GYLAFGN+  GN L         WL
Sbjct: 216 QNTMKS-PSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWL 272

Query: 181 VDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSF 240
           +D AN  + +HL+ +Y +   PI   VE    ++    K                     
Sbjct: 273 IDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPK-------------SKLL 319

Query: 241 RLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWV 300
           R+V R+  V+++ ++A+  PF  DF+ L+GA S  PLT   P   ++   K ++ S   +
Sbjct: 320 RVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKSLEKL 379

Query: 301 WLK-ILIWSCFIVSLVALVGSVQGLIQ 326
           W   IL   C ++ L+ +   V GLI 
Sbjct: 380 WKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.97
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.97
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.67
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.97
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.5
PRK10483	414	tryptophan permease; Provisional	98.31
PRK15132	403	tyrosine transporter TyrP; Provisional	98.2
PRK09664	415	tryptophan permease TnaB; Provisional	98.17
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.03
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.85
PRK11021	410	putative transporter; Provisional	97.82
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.81
PRK10655	438	potE putrescine transporter; Provisional	97.79
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.78
PRK10249	458	phenylalanine transporter; Provisional	97.75
PRK15049	499	L-asparagine permease; Provisional	97.71
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.7
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.7
PRK10644	445	arginine:agmatin antiporter; Provisional	97.62
PRK10746	461	putative transport protein YifK; Provisional	97.62
PRK10238	456	aromatic amino acid transporter; Provisional	97.59
TIGR00913	478	2A0310 amino acid permease (yeast).	97.59
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.55
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.55
TIGR00911	501	2A0308 L-type amino acid transporter.	97.53
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.5
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.48
TIGR00909	429	2A0306 amino acid transporter.	97.46
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.45
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.41
PRK11387	471	S-methylmethionine transporter; Provisional	97.41
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.39
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.36
PRK10580	457	proY putative proline-specific permease; Provision	97.27
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.22
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.22
PRK15238	496	inner membrane transporter YjeM; Provisional	97.18
PRK10836	489	lysine transporter; Provisional	97.03
TIGR00930	953	2a30 K-Cl cotransporter.	97.0
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.65
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.45
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	95.92
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	95.8
KOG1289	550	consensus Amino acid transporters [Amino acid tran	95.0
KOG1286	554	consensus Amino acid transporters [Amino acid tran	94.15
COG0833	541	LysP Amino acid transporters [Amino acid transport	93.24
TIGR00912	359	2A0309 spore germination protein (amino acid perme	92.09
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	83.47
PRK11375	484	allantoin permease; Provisional	81.59
KOG4812	262	consensus Golgi-associated protein/Nedd4 WW domain	80.51

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-43  Score=332.58  Aligned_cols=268  Identities=20%  Similarity=0.277  Sum_probs=233.4

Q ss_pred             cCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHH
Q 019490           20 YTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWR   99 (340)
Q Consensus        20 ~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (340)
                      ++|.+.|+++..++.+|++++||||+|+++|++|++.+++    +++++.+|.+++.+...+.+         ...+..+
T Consensus       176 ~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~----g~~ii~~y~~~~~~~~~~~~---------~~~~~~~  242 (449)
T KOG1304|consen  176 VLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILV----GLAIIMYYLVQDLPPTSDLP---------AVTGWSG  242 (449)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHH----HHHHHHHHHHhccCCccccc---------cccchhh
Confidence            5789999999999999999999999999999999998884    56666777777665222111         1224557


Q ss_pred             HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhH---HHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCC
Q 019490          100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMK---RATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYE  176 (340)
Q Consensus       100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~---~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~  176 (340)
                      .+.++|+.+|||+|++++.|++++||+|    ++|+   +++..+|.+++++|+.+|++||++|||++++.|++|+|+  
T Consensus       243 ~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~--  316 (449)
T KOG1304|consen  243 LPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ--  316 (449)
T ss_pred             hHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc--
Confidence            7899999999999999999999999999    8999   999999999999999999999999999999999999995  


Q ss_pred             chHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHH
Q 019490          177 PFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLA  256 (340)
Q Consensus       177 ~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA  256 (340)
                       +|+.+.+|+++++++..+||++.+|..+.+|+++.++.+++                 ++++....+|.+++++++.+|
T Consensus       317 -~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA  378 (449)
T KOG1304|consen  317 -EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIA  378 (449)
T ss_pred             -cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHH
Confidence             68999999999999999999999999999999865543321                 124778899999999999999


Q ss_pred             HhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019490          257 MIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRF---SFTWVWLKILIWSCFIVSLVALVGSVQGL  324 (340)
Q Consensus       257 ~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~---~~~~~~~~~i~~~g~~~~v~Gt~~si~~i  324 (340)
                      .++|+++.++||+||++++.+++++|+++|++.++++.+   .++++.+..++++|++.++.|||.|+.++
T Consensus       379 ~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  379 VAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            999999999999999999999999999999999876542   34455566788899999999999999864

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=7.2e-39  Score=306.76  Aligned_cols=277  Identities=39%  Similarity=0.658  Sum_probs=238.1

Q ss_pred             cCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHH
Q 019490           20 YTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWR   99 (340)
Q Consensus        20 ~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (340)
                      .++.+.|+++++.+.+|++|+||++.+++.|..|.++...|..+.+++.+..+.+....+.+.+..      .+. .. .
T Consensus       159 ~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~~-~~-~  230 (437)
T KOG1303|consen  159 SLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GTI-PT-V  230 (437)
T ss_pred             cccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CCC-cc-h
Confidence            566899999999999999999999999999999999999888877777776655442211111110      000 11 1


Q ss_pred             HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCCchH
Q 019490          100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFW  179 (340)
Q Consensus       100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~~~~  179 (340)
                       ++++|+++|+|+||.++||||++||+|    ++|+|++..++.+++.+|+.+++.||++|||+++++++.|++  .|.|
T Consensus       231 -f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~  303 (437)
T KOG1303|consen  231 -FTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTW  303 (437)
T ss_pred             -hhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--Cchh
Confidence             899999999999999999999999999    679999999999999999999999999999999999999996  3679


Q ss_pred             HHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHHHhc
Q 019490          180 LVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMIF  259 (340)
Q Consensus       180 ~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~i  259 (340)
                      +...+++++.+|++.+++++.+|+.+.+|+......++  +.             ++..+.|.+.|+.+++.+.++|+.+
T Consensus       304 ~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~  368 (437)
T KOG1303|consen  304 LIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSF  368 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhc
Confidence            99999999999999999999999999999987543221  00             1123789999999999999999999


Q ss_pred             ccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 019490          260 PFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKIL-IWSCFIVSLVALVGSVQGLIQ  326 (340)
Q Consensus       260 P~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i-~~~g~~~~v~Gt~~si~~ii~  326 (340)
                      |+|+++++++||+...++++++|+++|++.+|+++...+|++++.+ .++|+++++....+++++++.
T Consensus       369 PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~  436 (437)
T KOG1303|consen  369 PFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLII  436 (437)
T ss_pred             cccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999988888899999988 688888989998888888875

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=6.7e-38  Score=305.89  Aligned_cols=280  Identities=18%  Similarity=0.167  Sum_probs=219.0

Q ss_pred             cCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHH
Q 019490           20 YTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWR   99 (340)
Q Consensus        20 ~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (340)
                      .+|.+.|+++++++.+|++++|++|+++++|.+|..+++.+...+++..+.   ++.+     ++.+    .....+...
T Consensus       167 ~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~---~~~~-----~~~~----~~~~~~~~~  234 (473)
T PLN03074        167 NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALS---HGQV-----EGVK----HSGPTKLVL  234 (473)
T ss_pred             CcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCC-----CCCC----CCCchhHHH
Confidence            468899999999999999999999999999999998765432222211111   1111     1111    001235667


Q ss_pred             HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCc--ccccccCCCCc
Q 019490          100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPG--NFLTGFGFYEP  177 (340)
Q Consensus       100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~--~il~nl~~~~~  177 (340)
                      .+.++++++|+|+||+++||+++|||||    ++|+++...++..++..|+.+|+.||++|||++++  +.+.|+|++  
T Consensus       235 ~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~--  308 (473)
T PLN03074        235 YFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS--  308 (473)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc--
Confidence            7788899999999999999999999999    78999999999999999999999999999999764  567778742  


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHHH
Q 019490          178 FWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAM  257 (340)
Q Consensus       178 ~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~  257 (340)
                      . ...++++++.++++.+|+++..|+.+..|+....  ++    +             +....|+.+|+.+++.++++|+
T Consensus       309 ~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~--~~----~-------------k~~~~r~~~R~~lv~~~~~iA~  368 (473)
T PLN03074        309 G-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGV--HD----T-------------KSICLRALARLPVVVPIWFLAI  368 (473)
T ss_pred             h-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc--cc----c-------------ccHHHHHHHHHHHHHHHHHHHH
Confidence            2 3678999999999999999999998888875421  00    0             1126788999999999999999


Q ss_pred             hcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCC-------------cchhhH--HHHHHHHHH-HHHHHHHHHHHHH
Q 019490          258 IFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR-------------RFSFTW--VWLKILIWS-CFIVSLVALVGSV  321 (340)
Q Consensus       258 ~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~-------------~~~~~~--~~~~~i~~~-g~~~~v~Gt~~si  321 (340)
                      .+|+|++++||+||++++.+++++|+++|+++++++             .+++.|  +.+..++++ |++.++.|+|+|+
T Consensus       369 ~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi  448 (473)
T PLN03074        369 IFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASM  448 (473)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHH
Confidence            999999999999999999999999999999977543             111122  445556664 4444689999999


Q ss_pred             HHHHHhcccccccccc
Q 019490          322 QGLIQSLKTYKPFQAV  337 (340)
Q Consensus       322 ~~ii~~~~~~~~f~~~  337 (340)
                      +++++++++++.|++|
T Consensus       449 ~~ii~~~~~~~~f~~~  464 (473)
T PLN03074        449 TNFVRQIDTFGLFAKC  464 (473)
T ss_pred             HHHHHhhhhhhhhhhh
Confidence            9999999996665554

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.5e-37  Score=304.17  Aligned_cols=275  Identities=15%  Similarity=0.247  Sum_probs=208.8

Q ss_pred             chhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCccccccccccc----ccCcchhHHH
Q 019490           24 NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGV----DVSASEKVWR   99 (340)
Q Consensus        24 ~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~   99 (340)
                      ..+.++++++++||+++|++++|+++|.+|+++++..+++   +++++..++.+.+.  ++.+.+.    +........+
T Consensus       183 ~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~---ivi~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~~~~  257 (467)
T PTZ00206        183 LLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIV---IVVHSCMNGLPENI--KNVSVGKDDNAEIILFNSGNR  257 (467)
T ss_pred             EeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhh---hhhhhhcccCcccc--cccccCCCCCCceEEecCchH
Confidence            3445667888999999999999999999999887743222   22222223222111  0101000    0000111236


Q ss_pred             HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccC-CCCch
Q 019490          100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFG-FYEPF  178 (340)
Q Consensus       100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~-~~~~~  178 (340)
                      .+.++|+++|||.||.+.+|+++||+||  +.+||.++...++.+++.+|..+|++||++|||++++++++|++ .++  
T Consensus       258 ~~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~--  333 (467)
T PTZ00206        258 AIEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE--  333 (467)
T ss_pred             HHhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC--
Confidence            7899999999999999999999999997  34889999999999999999999999999999999999999994 333  


Q ss_pred             HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHHHh
Q 019490          179 WLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLAMI  258 (340)
Q Consensus       179 ~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA~~  258 (340)
                      ....++++++.+.++.+||++.+|+++.+++...  ++.+    +     .+       .+++...+..+++++.++|++
T Consensus       334 ~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~--~~~~----~-----~~-------~~~~~~~~~~l~~~~l~iAi~  395 (467)
T PTZ00206        334 PAIMVGFVGVLVKLFVSYALLGMACRNALYDVIG--WDAR----K-----VA-------FWKHCIAVVTLSVVMLLCGLF  395 (467)
T ss_pred             chhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhC--CCcc----c-----Cc-------hhhHHHHHHHHHHHHHHHHhc
Confidence            3456778888899999999999999998887642  1211    0     01       145555667777788999999


Q ss_pred             cccHHHHHHHHhhhhhhhHHHHHHHHHHHHHh---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019490          259 FPFFNDFVGLIGAASFWPLTVYFPVEMYIART---KIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLI  325 (340)
Q Consensus       259 iP~~~~visLvGs~~~~~l~filP~l~~~~~~---~~~~~~~~~~~~~~i~~~g~~~~v~Gt~~si~~ii  325 (340)
                      +|+++.+++|+||++++.++|++|+++|++..   +++.+..+|+.++.++++|++.+++|||+++++.+
T Consensus       396 vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        396 IPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             cCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            99999999999999999999999999999852   22223334556778899999999999999999876

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=1e-35  Score=287.21  Aligned_cols=279  Identities=26%  Similarity=0.381  Sum_probs=219.0

Q ss_pred             cCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccC---CCCcccccccccccccCcchh
Q 019490           20 YTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD---GPHATTLTGTTVGVDVSASEK   96 (340)
Q Consensus        20 ~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~   96 (340)
                      ..++..|.++.+++++||+++|++++|++.|.+|+++++.+    +...+....++   .+.+...++      .....+
T Consensus       121 ~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  190 (409)
T PF01490_consen  121 FISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYF----IVIVVIYIISYGPGEPSGVPSPP------VWPFIS  190 (409)
T ss_pred             cccccccccccccccccccccchhhHHHHHhhhhhhcccee----eeeecceeeeeeccccccccccc------ccccch
Confidence            46788999999999999999999999999999999988742    11222222221   111111111      112345


Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcch-hhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCC
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPEN-KSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFY  175 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~-~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~  175 (340)
                      .++.+.++|+++|||.||.+++|+++|||+|+  + ++++++...++.+++.+|..+|..||++||+++++++++|+|++
T Consensus       191 ~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~--~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~  268 (409)
T PF01490_consen  191 FSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS--KFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND  268 (409)
T ss_pred             hhHHHHhhhhhhhhhhcccccceeeeeccCCc--cccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc
Confidence            67899999999999999999999999999982  2 24559999999999999999999999999999999999999964


Q ss_pred             CchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHH
Q 019490          176 EPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVL  255 (340)
Q Consensus       176 ~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~i  255 (340)
                        ++...++++++.++++.+||++.+|.++.+|+...+..+..+...+         .++..+++|..+|+.+++.++++
T Consensus       269 --~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i  337 (409)
T PF01490_consen  269 --DVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK---------NTPSSRWLRYLIRIILVLLSFLI  337 (409)
T ss_pred             --ccccccccccchhhhhhccccccchhHhhhhhheeccccccccccc---------cccccceeeeeeecchhhhhhhh
Confidence              3678999999999999999999999999999876432000000000         01223477899999999999999


Q ss_pred             HHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHH-----HHHHHHHHHHHHHHHHHHHH
Q 019490          256 AMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVW-----LKILIWSCFIVSLVALVGSV  321 (340)
Q Consensus       256 A~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~-----~~~i~~~g~~~~v~Gt~~si  321 (340)
                      |..+|+++++++++||++++.++|++|+++|++.+++++.+.+|+.     .+.++.+|++.++.|+|+++
T Consensus       338 A~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  338 AIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            9999999999999999999999999999999999887654333322     34567778889999999875

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-33  Score=251.21  Aligned_cols=293  Identities=15%  Similarity=0.216  Sum_probs=237.8

Q ss_pred             CCCcccCCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcc
Q 019490           15 HHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSAS   94 (340)
Q Consensus        15 ~~~~~~~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   94 (340)
                      |.+....|.+-|+++....++|.+++|+||-.+.+|++++++.++..++.+   .|...+..  +.+++.+.+      .
T Consensus       230 ~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v---~YCLs~~~--dW~wskv~F------s  298 (524)
T KOG4303|consen  230 CFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMV---LYCLSFVS--DWSWSKVTF------S  298 (524)
T ss_pred             cCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh--hccceeEEE------E
Confidence            445567899999999999999999999999999999999999987555433   33322221  123333322      2


Q ss_pred             hhHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCC
Q 019490           95 EKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGF  174 (340)
Q Consensus        95 ~~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~  174 (340)
                      .+....+.++|+++|+|..|..+|.++.+|+||    .+|...+.++.+...++-.++|.+||++|||+++..|++|+|.
T Consensus       299 idi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~  374 (524)
T KOG4303|consen  299 IDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN  374 (524)
T ss_pred             EEcccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc
Confidence            344466689999999999999999999999999    7899999999999999999999999999999999999999985


Q ss_pred             CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCccc-ccchhhhhHHHHHHHHHH
Q 019490          175 YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVY-HVNSFRLVWRTAYVIVSA  253 (340)
Q Consensus       175 ~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~  253 (340)
                      +   .....+++++++.-+.|||+-.+...+.+|+.+.+-.|+.+|-.        .|.++ +.+.+.+..|..+++.+.
T Consensus       375 q---sfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fps--------cys~Dg~Lk~WgltlR~~lvvfTl  443 (524)
T KOG4303|consen  375 Q---SFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPS--------CYSPDGSLKEWGLTLRIILVVFTL  443 (524)
T ss_pred             c---chhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCce--------eeCCCcchhhheeeeeeHHHHHHH
Confidence            3   35788999999999999999776788888887654334332210        11111 222334568999999999


Q ss_pred             HHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 019490          254 VLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQSLKTYKP  333 (340)
Q Consensus       254 ~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~Gt~~si~~ii~~~~~~~~  333 (340)
                      ++|+.+|+|..+++|+|++.++.++|+.|++||+++.++.....+.+....++++|...++.|.|-|..++++++++..+
T Consensus       444 lmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~  523 (524)
T KOG4303|consen  444 LMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADS  523 (524)
T ss_pred             HHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCC
Confidence            99999999999999999999999999999999999998766666666777899999999999999999999999987544

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.97  E-value=3.8e-30  Score=245.48  Aligned_cols=278  Identities=19%  Similarity=0.274  Sum_probs=219.3

Q ss_pred             CCch-hHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHHH
Q 019490           22 SNNP-LMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRA  100 (340)
Q Consensus        22 ~~~~-~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (340)
                      +++. |+++...+..||++.|++.+|++.|.++.+++..++.    +++++.+..+...   ++..+  ...+....++.
T Consensus       126 ~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~----~vv~~~~~~~~~~---~~~~~--~~~~~~~~~~~  196 (411)
T KOG1305|consen  126 DRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVV----LVVYKYFQGPCAL---GRLSY--LVPNLSSFSSL  196 (411)
T ss_pred             cceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHHHHhccccc---CCccc--ccCCcchhhhh
Confidence            3444 6888999999999999999999999999999885433    2333333322100   11111  01112223688


Q ss_pred             HHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCCch--
Q 019490          101 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPF--  178 (340)
Q Consensus       101 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~~~--  178 (340)
                      +.++++++|||.||.++.|+++||+||  +++++.++...+...++.+|..+|.+||+.|||++++|++.++|.++..  
T Consensus       197 ~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l  274 (411)
T KOG1305|consen  197 FYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLL  274 (411)
T ss_pred             hhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhH
Confidence            899999999999999999999999999  6789999999999999999999999999999999999999999865432  


Q ss_pred             --HHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHHHHHHH
Q 019490          179 --WLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIVSAVLA  256 (340)
Q Consensus       179 --~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~iA  256 (340)
                        +....++..+.++.+.++|+..+|++..++....+..+++    +           +..+.++..++..++..+.+.|
T Consensus       275 ~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~a  339 (411)
T KOG1305|consen  275 RSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLA  339 (411)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHH
Confidence              2357899999999999999999999999877654332221    0           1112455678999999999999


Q ss_pred             HhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019490          257 MIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALVGSVQGLIQS  327 (340)
Q Consensus       257 ~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~Gt~~si~~ii~~  327 (340)
                      +.+|+++++++++||++++.++|++|+++|++..|+  +.++....+...++++..++.|+..-+.++..+
T Consensus       340 i~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  340 IFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             HHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999886  333333456677888888899988888887754

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.67  E-value=7.2e-15  Score=141.98  Aligned_cols=269  Identities=15%  Similarity=0.140  Sum_probs=175.6

Q ss_pred             CCCchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHHH
Q 019490           21 TSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRA  100 (340)
Q Consensus        21 ~~~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (340)
                      ++++.+.+++..++.++++.++...++..|.+....+...++.    +.+.....++.  .....+    ..........
T Consensus       126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l----~~~~~~~~~~~--~l~~~~----~~~~~~~~~~  195 (415)
T COG0814         126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLL----VVYLIPHWNPA--NLFALP----SASQSFWKYL  195 (415)
T ss_pred             cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH----HHHHhcccCHH--HHhccc----ccchhhHHHH
Confidence            6788889999999999999999999999999998877753332    22221111110  111100    0001234477


Q ss_pred             HHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCcccccccCCCCchHH
Q 019490          101 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWL  180 (340)
Q Consensus       101 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~nl~~~~~~~~  180 (340)
                      ..++|++.|||+||++++++++||++++  +++.+|+...+..+..++|..+++.+|..+|+.+.++++++.++++ .. 
T Consensus       196 ~~~ipv~vfsF~~h~~i~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~-~~-  271 (415)
T COG0814         196 LLAIPVFVFSFGFHGNIPSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI-SL-  271 (415)
T ss_pred             HHHhhHHHhhhhCCccchHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH-HH-
Confidence            7999999999999999999999999884  3349999999999999999999999999999999999999997532 11 


Q ss_pred             HHHHHHHHHHHHHHhhhhcccchH--------------HHHHHHhhhhCCCCccccCCCccccCCCccccc-chhhhhHH
Q 019490          181 VDFANACIAVHLIGAYQVFCQPIF--------------GFVEKWCNKRWPENKFITSEHGINVPCYGVYHV-NSFRLVWR  245 (340)
Q Consensus       181 ~~~~~~~~~i~l~~s~pl~~~p~~--------------~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r  245 (340)
                       .........+...+++...+|.+              +..+....+  .++     + .      +++.. ........
T Consensus       272 -l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~-----~-~------~r~~~~~~~~~~~~  336 (415)
T COG0814         272 -LSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNS-----K-P------GRKKTGLLTFLPPL  336 (415)
T ss_pred             -HHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccC-----c-c------cchhhhhhhHHHHH
Confidence             11112222222233333333333              333332211  010     0 0      01111 12223345


Q ss_pred             HHHHHHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 019490          246 TAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIVSLVALV  318 (340)
Q Consensus       246 ~~~~~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~~v~Gt~  318 (340)
                      .+.++....++...|..+.+++.+|+.....+.++.|...+.+....+..+.++.....++++|+..+..-.+
T Consensus       337 i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~  409 (415)
T COG0814         337 IFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL  409 (415)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence            5666777788889999999999999999999999999998877654333222112345556666665544443

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.97  E-value=2.4e-08  Score=95.89  Aligned_cols=234  Identities=9%  Similarity=0.070  Sum_probs=141.5

Q ss_pred             CchhHHHHHHHHHHhhcCCCcchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcccccccccccccCcchhHHHHHH
Q 019490           23 NNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQ  102 (340)
Q Consensus        23 ~~~~~~i~~~i~~pL~~~r~l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (340)
                      .+.+.++...++.++. .+..|..++++.+.+...+...++.++..+.+ .  ++  .+..+.  +  .. .....+...
T Consensus       114 ~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~-~--~~--~~~~~~--~--~~-~~~~~~~~~  182 (381)
T TIGR00837       114 ARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLLPH-V--KG--DLLLDV--A--LD-TSYWPYILS  182 (381)
T ss_pred             HHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c--cH--HHHhcC--c--cc-cccHHHHHH
Confidence            3333333444444443 45567888887776666554322222111111 1  11  011000  0  00 012336668


Q ss_pred             HHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCCC----------ccccccc
Q 019490          103 AIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAP----------GNFLTGF  172 (340)
Q Consensus       103 ~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v~----------~~il~nl  172 (340)
                      +++...++|++|.+++++.++++++   +||.+|++..+..+++++|+++........+.+.-          ++....+
T Consensus       183 a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~  259 (381)
T TIGR00837       183 ALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNAL  259 (381)
T ss_pred             HHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHH
Confidence            8899999999999999999999865   27899999999999999999875544433332211          1111111


Q ss_pred             CC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHHHHH
Q 019490          173 GF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAYVIV  251 (340)
Q Consensus       173 ~~-~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  251 (340)
                      .. ....+...++..+..++++.++.-......+...+.+    +.++  ++               ..|.....+..+.
T Consensus       260 ~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~----~~~~--~~---------------~~~~~~~~~~~~~  318 (381)
T TIGR00837       260 QGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLF----KFDD--SK---------------KGRFKTGLLTFLP  318 (381)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCc--cc---------------CCCchhhhhhHHh
Confidence            10 0123456677777778888888765545555544433    2210  00               1133445566677


Q ss_pred             HHHHHHhcccHH-HHHHHHhhhhhhhHHHHHHHHHHHHHhCC
Q 019490          252 SAVLAMIFPFFN-DFVGLIGAASFWPLTVYFPVEMYIARTKI  292 (340)
Q Consensus       252 ~~~iA~~iP~~~-~visLvGs~~~~~l~filP~l~~~~~~~~  292 (340)
                      ..++|.+.|+.. ..++..| +.+..+.+++|+++.++.+|+
T Consensus       319 pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       319 PLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             HHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            788899999877 8999999 889999999999999998764

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.50  E-value=1.8e-05  Score=76.28  Aligned_cols=171  Identities=17%  Similarity=0.282  Sum_probs=113.7

Q ss_pred             hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhh--hhhhh---------hcccCCC
Q 019490           96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC--GVMGY---------LAFGNDA  164 (340)
Q Consensus        96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~--g~~GY---------~~fG~~v  164 (340)
                      +....+.++++..+||..|.++|++.+.+++.   +||.+|++..+..+..++|++.  ..+|-         ..-|+++
T Consensus       182 ~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~  258 (394)
T PF03222_consen  182 DWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNV  258 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCCh
Confidence            44566799999999999999999999999853   3789999998888888888773  33441         1122222


Q ss_pred             Cc--ccccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhh
Q 019490          165 PG--NFLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRL  242 (340)
Q Consensus       165 ~~--~il~nl~~~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (340)
                      .+  ..+.+..  +..+...++.++-.+++.+||-=...-.+|.++..+..  +++                   ...|.
T Consensus       259 ~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~  315 (394)
T PF03222_consen  259 SALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRL  315 (394)
T ss_pred             HHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchH
Confidence            11  1122221  12356667778888888888843333445555444311  110                   02233


Q ss_pred             hHHHHHHHHHHHHHHhcc-cHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCC
Q 019490          243 VWRTAYVIVSAVLAMIFP-FFNDFVGLIGAASFWPLTVYFPVEMYIARTKIR  293 (340)
Q Consensus       243 ~~r~~~~~~~~~iA~~iP-~~~~visLvGs~~~~~l~filP~l~~~~~~~~~  293 (340)
                      .......+...++|...| .|...+++.| ...+.+..++|+++.+|.++++
T Consensus       316 ~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~  366 (394)
T PF03222_consen  316 KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK  366 (394)
T ss_pred             HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence            333445566777888887 4678899999 9999999999999999987654

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK10483 tryptophan permease; Provisional

Probab=98.31  E-value=6.1e-05  Score=72.60  Aligned_cols=168  Identities=11%  Similarity=0.121  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh--hhhhhhhc---------ccCCCCcc
Q 019490           99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM--CGVMGYLA---------FGNDAPGN  167 (340)
Q Consensus        99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~--~g~~GY~~---------fG~~v~~~  167 (340)
                      ..+.+++++.+||+.|+++|++.+.+++.   .||.+|++..+..+...+|+.  ..+.|-..         -|+++ +.
T Consensus       193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~  268 (414)
T PRK10483        193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DV  268 (414)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HH
Confidence            46699999999999999999999998853   368999999999999999988  23333221         23332 11


Q ss_pred             cccccCC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHH
Q 019490          168 FLTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRT  246 (340)
Q Consensus       168 il~nl~~-~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  246 (340)
                      .+..+.. .+..+...+..++..+++..||-=.....+|.+...+..  +++    .               ..|...-.
T Consensus       269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~----~---------------~~r~~~~~  327 (414)
T PRK10483        269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF--DDS----A---------------MGRFKTAL  327 (414)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc----c---------------ccceeeeh
Confidence            1122221 012355566777777788888743333455555544321  110    0               12222334


Q ss_pred             HHHHHHHHHHHhccc-HHHHHHHHhhhhhhhHHHHHHHHHHHHHhCC
Q 019490          247 AYVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKI  292 (340)
Q Consensus       247 ~~~~~~~~iA~~iP~-~~~visLvGs~~~~~l~filP~l~~~~~~~~  292 (340)
                      ...+...++|...|+ |-.-++..|.. +..+..++|+++-++.+|+
T Consensus       328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            567788899999996 78899999976 7788899999999999875

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.20  E-value=4e-05  Score=73.93  Aligned_cols=169  Identities=12%  Similarity=0.171  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC-----CCc-----ccc
Q 019490          100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-----APG-----NFL  169 (340)
Q Consensus       100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-----v~~-----~il  169 (340)
                      .+.+++++.+||+.|+++|++.+.+++.   .+|.+|++..+..+...+|+..=......-+.+     .++     +++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            6789999999999999999999999753   378999999999998888877322222111111     111     222


Q ss_pred             cccCC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHHH
Q 019490          170 TGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTAY  248 (340)
Q Consensus       170 ~nl~~-~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~  248 (340)
                      ..+.. -+..+...++.++..+++..||-=.....+|.+...+.+  ++     +              ...|...-.+.
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~--~~-----~--------------~~~r~~~~~l~  318 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR--RN-----T--------------VGGRLQTGLIT  318 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--Cc-----c--------------ccCCchhehhh
Confidence            33321 012356667777777788888743332445554443311  11     0              01234445667


Q ss_pred             HHHHHHHHHhccc-HHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCC
Q 019490          249 VIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKIR  293 (340)
Q Consensus       249 ~~~~~~iA~~iP~-~~~visLvGs~~~~~l~filP~l~~~~~~~~~  293 (340)
                      .+...++|...|+ |...+++.|. ..+.+.+++|+++-+|.++++
T Consensus       319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~  363 (403)
T PRK15132        319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN  363 (403)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence            7888889999985 5677888775 588999999999999987643

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.17  E-value=0.00026  Score=68.31  Aligned_cols=169  Identities=14%  Similarity=0.137  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh--hhhhhh---------hcccCCCCcc
Q 019490           99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM--CGVMGY---------LAFGNDAPGN  167 (340)
Q Consensus        99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~--~g~~GY---------~~fG~~v~~~  167 (340)
                      ..+.+++++.+||+.|+++|++.+.+++.   .|+.+|.+.....+..++|+.  ...+|-         ...|+++...
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l  270 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL  270 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence            46689999999999999999999998753   367788888877887778865  233331         1233333221


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhHHHH
Q 019490          168 FLTGFGFYEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA  247 (340)
Q Consensus       168 il~nl~~~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  247 (340)
                      +..-....+..+......++..+++..||-=.....+|.+...+..  +++    .               ..|...-..
T Consensus       271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~----~---------------~~r~~~~~l  329 (415)
T PRK09664        271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DNS----H---------------GGRFKTVLL  329 (415)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc----c---------------ccceeeehh
Confidence            1111111112466677777878888888843322445554443311  110    0               122223345


Q ss_pred             HHHHHHHHHHhccc-HHHHHHHHhhhhhhhHHHHHHHHHHHHHhCC
Q 019490          248 YVIVSAVLAMIFPF-FNDFVGLIGAASFWPLTVYFPVEMYIARTKI  292 (340)
Q Consensus       248 ~~~~~~~iA~~iP~-~~~visLvGs~~~~~l~filP~l~~~~~~~~  292 (340)
                      ..+...++|...|+ |-..++..|.. ++.+.-++|+++-++.+|+
T Consensus       330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            67778889999997 88899999996 7788999999999999875

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.03  E-value=0.00056  Score=67.68  Aligned_cols=47  Identities=13%  Similarity=0.146  Sum_probs=40.8

Q ss_pred             HHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490          106 DVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus       106 ~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      .+.++|.|--.....-+|+|||+   |+.+|++..+...+..+|.+....
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~  248 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLA  248 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999994   789999999999999999875444

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.85  E-value=0.00073  Score=65.73  Aligned_cols=181  Identities=12%  Similarity=0.093  Sum_probs=106.5

Q ss_pred             hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhh--cccCCCCcccc-ccc
Q 019490           96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYL--AFGNDAPGNFL-TGF  172 (340)
Q Consensus        96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~--~fG~~v~~~il-~nl  172 (340)
                      +..++..++=.-.|||.|=..+-.+-+|+|||   +|++++++..++.+++.+|+++=+..+.  ...|-..++.. ..+
T Consensus       202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~F  278 (479)
T KOG1287|consen  202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTF  278 (479)
T ss_pred             chHHHHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHH
Confidence            33455677777889999999999999999999   4789999999999999999997544332  22222222211 001


Q ss_pred             CCC-CchHHHHHHHHHHHHHHHHhhhhcccc-hHHHHHHHhhhhCCCCc-cccCCCccccCCCcccccchhhhhHHHHHH
Q 019490          173 GFY-EPFWLVDFANACIAVHLIGAYQVFCQP-IFGFVEKWCNKRWPENK-FITSEHGINVPCYGVYHVNSFRLVWRTAYV  249 (340)
Q Consensus       173 ~~~-~~~~~~~~~~~~~~i~l~~s~pl~~~p-~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  249 (340)
                      .+. .+.+ ..++.++..++.+.+.--.++. .|.....--+.+.|+.- ..++           ++.+.   ...+.+.
T Consensus       279 a~~~~G~~-~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~-----------~~~TP---~~allf~  343 (479)
T KOG1287|consen  279 ADRILGVF-AWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISV-----------RRFTP---RPALLFS  343 (479)
T ss_pred             HHHhccch-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcC-----------CCCCC---hHHHHHH
Confidence            100 0112 2445555556555554322211 11111110001122210 0000           00001   1234445


Q ss_pred             HHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCc
Q 019490          250 IVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRR  294 (340)
Q Consensus       250 ~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~  294 (340)
                      ....++...+.|++.+++.++=.......+.+=+++++|.++++.
T Consensus       344 ~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~  388 (479)
T KOG1287|consen  344 GLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL  388 (479)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            555566666789999999999999989999999999999988653

>PRK11021 putative transporter; Provisional

Probab=97.82  E-value=0.0033  Score=60.96  Aligned_cols=57  Identities=19%  Similarity=0.378  Sum_probs=50.1

Q ss_pred             hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      +..+...++....|+|.|--.....-+|+|||+   |+.+|++..+...+..+|++....
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            344667889999999999999999999999994   789999999999999999997543

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.81  E-value=0.0011  Score=64.31  Aligned_cols=201  Identities=9%  Similarity=0.073  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHhhcCccchHhhHhhhcCC-------CcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC-----CCc
Q 019490           99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSS-------PPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND-----APG  166 (340)
Q Consensus        99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p-------~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~-----v~~  166 (340)
                      ....+++++.+||+.|+.+|++...+|+.       +.+.+|-+|++..+..+...+|+..-...-..-+.+     .+.
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            56689999999999999999999985332       112578889999999988888887544333333222     112


Q ss_pred             cc--c----cccCCCC-c-----hHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcc
Q 019490          167 NF--L----TGFGFYE-P-----FWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGV  234 (340)
Q Consensus       167 ~i--l----~nl~~~~-~-----~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (340)
                      |+  +    +.++... .     .+......+...+++..||-=.....+|.++....+.....+  ++    +      
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~--~~----~------  357 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGD--KT----K------  357 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc----c------
Confidence            22  1    1222100 0     134555556666677777733333567776665522101100  00    0      


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Q 019490          235 YHVNSFRLVWRTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIARTKIRRFSFTWVWLKILIWSCFIV  312 (340)
Q Consensus       235 ~~~~~~~~~~r~~~~~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~i~~~g~~~  312 (340)
                      .+.+..+.....+..+.+.+.|..=|++-++++-+|+-....+.|++|.+.-.|.-.-++.+ .+..++.+.+.|++.
T Consensus       358 ~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~  434 (443)
T PRK13629        358 VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLT  434 (443)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHH
Confidence            11124556677788888999999999999999988888888999999998876652211111 111345556666544

>PRK10655 potE putrescine transporter; Provisional

Probab=97.79  E-value=0.0032  Score=61.58  Aligned_cols=56  Identities=13%  Similarity=0.091  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 019490           98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG  156 (340)
Q Consensus        98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~G  156 (340)
                      .+...++....|+|.|--....+-+|+|||+   |+.+|++..+..++..+|++.....
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~  244 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVI  244 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence            3555778889999999999999999999994   6899999999999999998865443

>TIGR00814 stp serine transporter

Probab=97.78  E-value=0.0011  Score=63.98  Aligned_cols=180  Identities=9%  Similarity=0.074  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhh----hcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCC-----Ccc
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDT----LKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA-----PGN  167 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~----m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v-----~~~  167 (340)
                      ..+...+++...+||.+|..+++...+    .+||+.+.+|-+|....+..+...+|+..-...-...+.+.     +++
T Consensus       185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n  264 (397)
T TIGR00814       185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN  264 (397)
T ss_pred             HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence            346779999999999999999999733    44343235778899999988888888775444333333221     122


Q ss_pred             c--ccccCC-CCchHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHhhhhCCCCccccCCCccccCCCcccccchhhhhH
Q 019490          168 F--LTGFGF-YEPFWLVDFANACIAVHLIGAYQVFCQPIFGFVEKWCNKRWPENKFITSEHGINVPCYGVYHVNSFRLVW  244 (340)
Q Consensus       168 i--l~nl~~-~~~~~~~~~~~~~~~i~l~~s~pl~~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (340)
                      +  +..+.+ .+..+...+..+.-.+++..|+-=.....++.++....+....+   ++    +      .+++......
T Consensus       265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~---~~----~------~~~~~~~~~~  331 (397)
T TIGR00814       265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK---GK----K------INIRKLNRAI  331 (397)
T ss_pred             cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc---cc----c------cCHHHHHHHH
Confidence            1  111111 01124455555666667777775444466777776552210110   00    0      1112445566


Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 019490          245 RTAYVIVSAVLAMIFPFFNDFVGLIGAASFWPLTVYFPVEMYIAR  289 (340)
Q Consensus       245 r~~~~~~~~~iA~~iP~~~~visLvGs~~~~~l~filP~l~~~~~  289 (340)
                      ..+..+.+...|..=|++-++++-+|+-....+.|++|...-.|.
T Consensus       332 ~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v  376 (397)
T TIGR00814       332 AIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV  376 (397)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence            677888888999999999999997777778889999999887665

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10249 phenylalanine transporter; Provisional

Probab=97.75  E-value=0.0038  Score=61.55  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  154 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  154 (340)
                      ..+...++....|+|.|--.....-+|+|||+   |+.+|++..+......+|.....
T Consensus       208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~  262 (458)
T PRK10249        208 WNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLV  262 (458)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            33567888999999999999999999999993   78999999999999999977433

>PRK15049 L-asparagine permease; Provisional

Probab=97.71  E-value=0.0038  Score=62.27  Aligned_cols=56  Identities=21%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      ....+.++....|+|.|--.....-+|+|||+   |+.+|++..++..+.++|+.....
T Consensus       219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~  274 (499)
T PRK15049        219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVL  274 (499)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667789999999999999999999994   689999999888888888875443

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.70  E-value=0.0055  Score=60.54  Aligned_cols=59  Identities=10%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 019490           98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF  160 (340)
Q Consensus        98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~f  160 (340)
                      .+...++....|+|.|--....+-+|.||+    |+.+|.+..+...+..+|.+.....+...
T Consensus       195 ~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~  253 (468)
T TIGR03810       195 TQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIM  253 (468)
T ss_pred             HHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            345578888999999988888888888875    79999999999999999999776554333

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.70  E-value=0.0044  Score=60.88  Aligned_cols=56  Identities=14%  Similarity=0.172  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      ..+...++....|+|.|--.....-+|+|||+   |+.+|++..+...+..+|++....
T Consensus       180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677999999999999999999999999993   689999999999999999885444

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.62  E-value=0.0098  Score=58.32  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      +.....++....|+|.|--.....-+|+|||+   |+.+|++..+..++..+|.+....
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~  245 (445)
T PRK10644        190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA  245 (445)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence            34555778889999999999999999999994   689999999999999999987654

>PRK10746 putative transport protein YifK; Provisional

Probab=97.62  E-value=0.0096  Score=58.76  Aligned_cols=55  Identities=13%  Similarity=0.062  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  154 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  154 (340)
                      +.+...++....|+|.|--.....-+|+|||   +|+.+|++..+...+..+|+....
T Consensus       199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~  253 (461)
T PRK10746        199 WKGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIF  253 (461)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466688999999999999999999999999   378999999888888888887533

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.59  E-value=0.0056  Score=60.28  Aligned_cols=53  Identities=13%  Similarity=0.144  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMC  152 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~  152 (340)
                      ......+++...|+|.|--.....-+|+|||+   |+.+|++..+.......|+..
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        199 FTGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence            33555778889999999999999999999994   689999988888777777653

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.59  E-value=0.012  Score=58.28  Aligned_cols=55  Identities=16%  Similarity=0.177  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  154 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  154 (340)
                      ..+...++....|+|.|--....+-+|+|||+   |+.+|++..+...+..+|++...
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667888889999999999999999999994   78999999999999999998643

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.55  E-value=0.0071  Score=60.43  Aligned_cols=50  Identities=10%  Similarity=0.007  Sum_probs=41.4

Q ss_pred             HHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 019490          101 FQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG  153 (340)
Q Consensus       101 ~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g  153 (340)
                      ...+....|+|.|--.....-+|+|||+   |+++|++..+..++..+|.+..
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence            3444446889999999999999999994   6899999999998888887643

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.55  E-value=0.011  Score=57.82  Aligned_cols=59  Identities=14%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 019490           96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY  157 (340)
Q Consensus        96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY  157 (340)
                      ...+...++....|+|.|--.....-+|+|||+   |+.+|++..+...+..+|++......
T Consensus       185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~  243 (435)
T PRK10435        185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVIS  243 (435)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777889999999999999999999999994   68999999999999999998765543

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.53  E-value=0.0057  Score=60.96  Aligned_cols=57  Identities=14%  Similarity=0.188  Sum_probs=49.8

Q ss_pred             hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      +..+...++....|+|.|--....+-+|+|||+   |+.+|++..+..++..+|++....
T Consensus       233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a  289 (501)
T TIGR00911       233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIA  289 (501)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            345666788999999999999999999999993   689999999999999999997543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.50  E-value=0.0095  Score=58.41  Aligned_cols=56  Identities=14%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      ..+...++....|+|.|--.....-+|+|||+   |+.+|++..+..+++++|++....
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence            34566888899999999999999999999994   689999999999999999886543

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.48  E-value=0.0084  Score=60.60  Aligned_cols=56  Identities=7%  Similarity=0.139  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      ..+.+.+.....|+|.|--.....-+|+|||+   |+.+|.+..++.+++.+|.++...
T Consensus       230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~  285 (557)
T TIGR00906       230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA  285 (557)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999994   689999999999999999986544

>TIGR00909 2A0306 amino acid transporter

Probab=97.46  E-value=0.019  Score=55.82  Aligned_cols=58  Identities=16%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGY  157 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY  157 (340)
                      ..+...++....++|.|.-......+|+|||+   |+.+|++..+..++.++|++......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       194 FGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566888899999999999999999999993   68999999999999999998765433

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.45  E-value=0.0065  Score=58.99  Aligned_cols=58  Identities=16%  Similarity=0.279  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 019490          100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN  162 (340)
Q Consensus       100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~  162 (340)
                      .+.+++...|+|.|--.....-+|+||     |+.+|++..+..++.++|.+....-....++
T Consensus       190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPD  247 (426)
T ss_dssp             HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred             hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccc
Confidence            568888899999999999999999775     5899999999999999999986655545444

...

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.41  E-value=0.025  Score=55.93  Aligned_cols=55  Identities=13%  Similarity=0.140  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      ......++....|+|.|--....+-+|+|| +   |+.+|.+..+..++.++|++....
T Consensus       198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~  252 (473)
T TIGR00905       198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLL  252 (473)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHH
Confidence            345667888899999999999999999999 4   799999999999999999887554

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.41  E-value=0.02  Score=56.61  Aligned_cols=56  Identities=11%  Similarity=0.164  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      ..+...++....|+|.|--.....-+|+|||+   |+.+|++..+...+..+|+.....
T Consensus       205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~  260 (471)
T PRK11387        205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLV  260 (471)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777888999999999999999999994   689999999999999999887553

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.39  E-value=0.026  Score=55.85  Aligned_cols=56  Identities=18%  Similarity=0.175  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhh
Q 019490           98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMG  156 (340)
Q Consensus        98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~G  156 (340)
                      .+.+.++....|+|.|--.....-+|+|||+   |+.+|++..+.......|.+....-
T Consensus       211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~  266 (469)
T PRK11049        211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVI  266 (469)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577889999999999999999999999993   6899999877777777787655443

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.36  E-value=0.023  Score=56.34  Aligned_cols=50  Identities=8%  Similarity=-0.022  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh
Q 019490           99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM  151 (340)
Q Consensus        99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~  151 (340)
                      ....++....|+|.|--.....-+|+|||+   |+.+|++..+..+...++.+
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~  267 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFC  267 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHH
Confidence            445566667899999999999999999994   78999999988776654443

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.27  E-value=0.059  Score=53.05  Aligned_cols=53  Identities=21%  Similarity=0.174  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhh
Q 019490           98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCG  153 (340)
Q Consensus        98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g  153 (340)
                      .+...++....|+|.|--.....-+|+|||+   |+.+|++..+......+|....
T Consensus       199 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~  251 (457)
T PRK10580        199 LGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTL  251 (457)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHH
Confidence            3666888899999999999999999999993   6799999888777777787754

>TIGR00908 2A0305 ethanolamine permease

Probab=97.22  E-value=0.03  Score=54.82  Aligned_cols=55  Identities=13%  Similarity=0.025  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  154 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  154 (340)
                      +.+.+.++....|+|.|.-.....-+|+|||+   |+.+|++..+..++..+|...-.
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence            34667888888999999999999999999994   68999999999988888877633

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.22  E-value=0.038  Score=54.30  Aligned_cols=56  Identities=18%  Similarity=0.174  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      ..+...++....|+|.|--....+-+|+|||+   |+.+|++..+......+|++....
T Consensus       200 ~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~  255 (452)
T TIGR01773       200 IGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFI  255 (452)
T ss_pred             HHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677889999999999999999999999993   689999988888888888875443

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.18  E-value=0.057  Score=53.79  Aligned_cols=54  Identities=11%  Similarity=0.130  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490           98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  154 (340)
Q Consensus        98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  154 (340)
                      .+...++....|+|.|--.....-+|+|||+   |+.+|++..+...+..+|.+..+
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence            3455677778999999999999999999994   68999999999999999988543

>PRK10836 lysine transporter; Provisional

Probab=97.03  E-value=0.12  Score=51.43  Aligned_cols=55  Identities=15%  Similarity=0.148  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      ...+.+.....|+|.|--.....-+|+|||+   |+.+|++..++..+..+|++....
T Consensus       205 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~  259 (489)
T PRK10836        205 AAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILI  259 (489)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666799999999999999999993   789999999999999999987543

>TIGR00930 2a30 K-Cl cotransporter

Probab=97.00  E-value=0.38  Score=51.73  Aligned_cols=52  Identities=23%  Similarity=0.221  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490          100 AFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  154 (340)
Q Consensus       100 ~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  154 (340)
                      ++..++++..||.|-.....+-.|+|||+   |+.++.+..+..+++++|+++.+
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~  333 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVV  333 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHH
Confidence            55777888889999999999999999994   78999999999999999999865

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.65  E-value=0.16  Score=49.73  Aligned_cols=62  Identities=15%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 019490           98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN  162 (340)
Q Consensus        98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~  162 (340)
                      .....+++...++|.|-......-+|+|||+   |+.+|.+..++..+..+|+.....-....++
T Consensus       201 ~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         201 GGILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            3677888999999999999999999999983   6799999999999999999987766666554

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.45  E-value=0.86  Score=45.08  Aligned_cols=53  Identities=9%  Similarity=-0.056  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhh
Q 019490           99 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGV  154 (340)
Q Consensus        99 ~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~  154 (340)
                      ....+.....|+|.|--....+-+|+|||+   |+.+|.+..+..+...+|.++-+
T Consensus       214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~  266 (475)
T TIGR03428       214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMIL  266 (475)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHH
Confidence            444566667899999999999999999994   78999999999888766655433

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=95.92  E-value=0.22  Score=48.24  Aligned_cols=178  Identities=14%  Similarity=0.180  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHH-----HHHHHHHHHHHhhhhhhhhcccCCCCccccc
Q 019490           96 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATA-----VGVTTTTLFYIMCGVMGYLAFGNDAPGNFLT  170 (340)
Q Consensus        96 ~~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~-----~s~~~~~~~y~~~g~~GY~~fG~~v~~~il~  170 (340)
                      ...+.+.++-+.+|||.|.-.+=-.-+|-|||+   |..+|+.+     ....-+..+..++.+.=|-.++++.++-+ .
T Consensus       201 G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV-~  276 (462)
T COG1113         201 GFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV-T  276 (462)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH-H
Confidence            456778999999999999999999999999995   56777653     44555566666677777777777644432 2


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhh--hhcccchHHHHHHHhhh-hCCCCccccCCCccccCCCcccccchhhhhHHHH
Q 019490          171 GFGFYEPFWLVDFANACIAVHLIGAY--QVFCQPIFGFVEKWCNK-RWPENKFITSEHGINVPCYGVYHVNSFRLVWRTA  247 (340)
Q Consensus       171 nl~~~~~~~~~~~~~~~~~i~l~~s~--pl~~~p~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  247 (340)
                      -+..-+-.+...+.|..+..+.+.+.  .+|.  .-+.+-.+-.+ .-|+ .+ .+-....+|        ..-+....+
T Consensus       277 ~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys--tsRmL~~la~~g~APk-~~-~klsk~gVP--------~~ai~~s~~  344 (462)
T COG1113         277 VFSLIGIPFAAGIMNFVVLTAALSALNSGLYS--TSRMLYSLAKQGDAPK-AF-AKLSKRGVP--------VNAILLSAV  344 (462)
T ss_pred             HHHHcCCcccccceeEEEeechhhcccccccc--cchHHHHHhhcCcccH-hH-hhccccCCC--------HHHHHHHHH
Confidence            22110001122222222222222222  2221  11112111100 0011 00 000000122        444567777


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHhhhhhhhH--HHHHHHHHHHHHhC
Q 019490          248 YVIVSAVLAMIFPFFNDFVGLIGAASFWPL--TVYFPVEMYIARTK  291 (340)
Q Consensus       248 ~~~~~~~iA~~iP~~~~visLvGs~~~~~l--~filP~l~~~~~~~  291 (340)
                      ...++.++-...|  +.++.++-+..+..+  ...+=.+.|+|.+|
T Consensus       345 ~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         345 VLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             HHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888889  666666655554433  33444566888876

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=95.80  E-value=0.055  Score=53.55  Aligned_cols=62  Identities=23%  Similarity=0.246  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFG  161 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG  161 (340)
                      +.+.+.++....++|.|--.....-+|.|||+   |+.+|....+.....++|.+.....=...+
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~  260 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVP  260 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccC
Confidence            55788999999999999999999999999993   789999999999999999886654434444

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.00  E-value=1.8  Score=43.00  Aligned_cols=114  Identities=9%  Similarity=0.084  Sum_probs=65.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhheeeeeecccCCCCcc-c-----ccccccccccCcchhHHHHHHHHHHHHHhhcCccc
Q 019490           43 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAT-T-----LTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTV  116 (340)
Q Consensus        43 l~~L~~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~  116 (340)
                      -|.+++++.+++..++...++.++......-++.+.+. +     .++.+ |  .  .+..|+...++-.-...+.|--.
T Consensus       196 ~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~s-g--w--~~~G~afil~f~~~~wt~sGyDa  270 (550)
T KOG1289|consen  196 TRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYS-G--W--KNNGWAFILGFFNPAWTMSGYDA  270 (550)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccC-C--C--CcchHHHHHhhccceeEEeccCc
Confidence            35777777777776665444444333332222211111 0     11110 0  1  12566666677777777777778


Q ss_pred             hHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 019490          117 LVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDA  164 (340)
Q Consensus       117 ~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~v  164 (340)
                      -..+-+|-+|++   ++-+|.+..+..+..++-.++-+.-..+-++|.
T Consensus       271 ~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~  315 (550)
T KOG1289|consen  271 AAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL  315 (550)
T ss_pred             hHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            889999999985   678888887777766665544443334445443

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=94.15  E-value=2.6  Score=42.62  Aligned_cols=56  Identities=14%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhh
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVM  155 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~  155 (340)
                      +.+...++-+..|+|.|-=.+-..-+|-|||   +|+.+++...++..++.+|++..+.
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~  286 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIV  286 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHH
Confidence            5677789999999999999999999999999   4789999999999999999987543

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=93.24  E-value=6.2  Score=39.35  Aligned_cols=122  Identities=17%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             CCchhHHHHHHHHHHhhc--CCCcchhh-HHHHHHHHHHHHHHHhhheeeeeecccCCCCccccccccccccc-CcchhH
Q 019490           22 SNNPLMIIFACIQIVLSQ--IPNFHKLS-WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDV-SASEKV   97 (340)
Q Consensus        22 ~~~~~~~i~~~i~~pL~~--~r~l~~L~-~~S~~~~~~~~~~~~i~v~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   97 (340)
                      +...|..++.++++.+-.  .|....-. |+|.+=+++++.++++  +.++..+..  +.++.. +..|..++ .....+
T Consensus       159 ~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~--gii~~~Gg~--~~~~~i-g~~yw~~pg~F~~gf  233 (541)
T COG0833         159 PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIIL--GIIIICGGG--PTHGYI-GFNYWHDPGAFAGGF  233 (541)
T ss_pred             ChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHH--HHHHhcCCC--CCCCCc-ceeeecCCCCCCcch
Confidence            556788777777766655  46666665 5666666666654332  222222221  111111 11111011 112345


Q ss_pred             HHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHh
Q 019490           98 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIM  151 (340)
Q Consensus        98 ~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~  151 (340)
                      .+....+-+..|||.|.=.+----.|-+||.   |..+|+++...-=+..+|++
T Consensus       234 ~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~  284 (541)
T COG0833         234 KGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYIL  284 (541)
T ss_pred             HHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHH
Confidence            6777888889999999999888899999993   78999998888888888876

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=92.09  E-value=9.5  Score=36.01  Aligned_cols=61  Identities=18%  Similarity=0.333  Sum_probs=46.8

Q ss_pred             HHHHHH-HHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 019490           99 RAFQAI-GDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND  163 (340)
Q Consensus        99 ~~~~~~-g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~  163 (340)
                      +...+. ....++|.+.....-...+++||    |+.+|....+..++..+|...-...-..+|.+
T Consensus       179 ~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~  240 (359)
T TIGR00912       179 PILKGAYPVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGN  240 (359)
T ss_pred             HHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHH
Confidence            444333 36778888888888888888887    78999999999999999998766666666644

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=83.47  E-value=46  Score=32.59  Aligned_cols=65  Identities=15%  Similarity=0.178  Sum_probs=38.8

Q ss_pred             HHHHHHHHH-HHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhc----ccCCCCc
Q 019490           98 WRAFQAIGD-VAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLA----FGNDAPG  166 (340)
Q Consensus        98 ~~~~~~~g~-~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~----fG~~v~~  166 (340)
                      +....+++. +.+.-..-.+.+..-+-+|+|    ++-.+....++.........+|.++-..    +|+...+
T Consensus       207 ~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~  276 (442)
T TIGR00800       207 WAFLYALSLVIGSFATWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWS  276 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence            344444443 222233556778999999987    4444556666666666666777766655    7765433

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PRK11375 allantoin permease; Provisional

Probab=81.59  E-value=59  Score=32.34  Aligned_cols=20  Identities=20%  Similarity=0.170  Sum_probs=15.8

Q ss_pred             HHHHHHHHhhhhhhhHHHHH
Q 019490          262 FNDFVGLIGAASFWPLTVYF  281 (340)
Q Consensus       262 ~~~visLvGs~~~~~l~fil  281 (340)
                      |.+++++.|++.++....++
T Consensus       373 f~~FL~~lg~~l~Pi~gImi  392 (484)
T PRK11375        373 IYLFLDIIGGMLGPVIGVMM  392 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88889988888877776654

>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]

Probab=80.51  E-value=3.6  Score=36.38  Aligned_cols=71  Identities=14%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHhcccHHHHHHHH---------hhhhhhhHHHHHHHHHHHHHhCCCc---chh--hHHHHHHHHHHHH
Q 019490          245 RTAYVIVSAVLAMIFPFFNDFVGLI---------GAASFWPLTVYFPVEMYIARTKIRR---FSF--TWVWLKILIWSCF  310 (340)
Q Consensus       245 r~~~~~~~~~iA~~iP~~~~visLv---------Gs~~~~~l~filP~l~~~~~~~~~~---~~~--~~~~~~~i~~~g~  310 (340)
                      .-+..+.++++|..++.+|-++..+         ||.+|..++++=    |+.+-+...   +..  -.|+.|+++++|+
T Consensus       159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~  234 (262)
T KOG4812|consen  159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL  234 (262)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence            3556677788888888888888775         888887777765    555533211   111  2456788889999


Q ss_pred             HHHHHHHHH
Q 019490          311 IVSLVALVG  319 (340)
Q Consensus       311 ~~~v~Gt~~  319 (340)
                      ++.+-|++.
T Consensus       235 ll~lr~~i~  243 (262)
T KOG4812|consen  235 LLFLRGFIN  243 (262)
T ss_pred             HHHHHHHHh
Confidence            998888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.32
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.99
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.71

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.32  E-value=2.5e-05  Score=74.68  Aligned_cols=63  Identities=11%  Similarity=0.079  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccC
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGN  162 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~  162 (340)
                      ..+...++....|+|.|........+|+|||   +|+.+|.+..+...++.+|++.........+.
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            4467788899999999999999999999998   36899999999999999999987765555543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.99  E-value=0.00031  Score=68.30  Aligned_cols=59  Identities=5%  Similarity=0.004  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 019490          102 QAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND  163 (340)
Q Consensus       102 ~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~fG~~  163 (340)
                      .++....|+|.|.-.....-+|+|||+   |+.+|++..+..+++++|++..+.-....+++
T Consensus       205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          205 VVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            456678999999999999999999994   68999999999999999999877666555543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.71  E-value=0.00085  Score=63.94  Aligned_cols=61  Identities=13%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhhcCccchHhhHhhhcCCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 019490           97 VWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAF  160 (340)
Q Consensus        97 ~~~~~~~~g~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~v~~~s~~~~~~~y~~~g~~GY~~f  160 (340)
                      ..+.+.++....++|.|.-......+|+|||   +|+.+|.+..+...++.+|...........
T Consensus       187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~  247 (444)
T 3gia_A          187 VSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNL  247 (444)
T ss_dssp             HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3467788888899999999999999999999   367999999999999999998766544443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00