Citrus Sinensis ID: 019510

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccccccccccccccccEccccccEEEEEEEEEcccccccccccccEEccccEEEEEEEEEEcHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlasTRVRLsfqeippilsldssidlnsvFSRTESLLYTLADAAVSldsasggaastsadgatqknggwfGFISEAMEFVLKILKDgidavhvpySYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRqagvnplagclptlatIPVWIGLYQALSNVaneglltegffwipslsgpttiaarqsgsgiswllpfvdghpplgwhdtaaYLVLPVLLVVSQYasmelmkppqtddpaqkntlLVFKFLPLMIGYfslsvpsglSIYWLVSHINFTKSS
Flexible Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlastrvRLSFQeippilsldssidLNSVFSRTESLLYTLADAAVSLDSASGGaastsadgatqkNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMkppqtddpaQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS
Low Complexity Region (SEG)
MTKTLISSPPFVGTplpspssslsrhglhrlpNRRLASTRVRLSFQEippilsldssidlNSVFSRTESLLYtladaavsldsasggaastsadgatQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYlvlpvllvvSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS
Disordered region (IsUnstruct)
***************************************RVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVS*******************NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASM**************NTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINF****
Disordered Region (DISOPRED)
******SSPPFVGTPLPSPSSS**********NRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG*********SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA********************VFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKS*
Disordered Region (DISEMBL)
MTKTLISSPPFVGT************GLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLD*************ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS
Disordered Region (DISPRO)
*****ISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q8LBP4	462	Inner membrane protein AL	yes	no	0.926	0.681	0.755	1e-144
Q9FY06	442	Inner membrane protein PP	N/A	no	0.938	0.721	0.761	1e-141
Q9FYL3	499	ALBINO3-like protein 1, c	no	no	0.779	0.531	0.700	1e-104
Q8LKI3	422	Inner membrane ALBINO3-li	N/A	no	0.685	0.552	0.613	9e-85
Q8S339	495	Inner membrane ALBINO3-li	N/A	no	0.714	0.490	0.570	6e-78
A0LLH3	553	Membrane protein insertas	yes	no	0.611	0.376	0.316	8e-29
C3LP77	541	Membrane protein insertas	yes	no	0.552	0.347	0.333	2e-28
Q9KVY4	541	Membrane protein insertas	yes	no	0.552	0.347	0.333	2e-28
A5F484	541	Membrane protein insertas	yes	no	0.552	0.347	0.333	2e-28
O66103	622	Membrane protein insertas	yes	no	0.538	0.294	0.373	7e-28

>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2

 Score =  509 bits (1312), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/331 (75%), Positives = 277/331 (83%), Gaps = 16/331 (4%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNT 303
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQTDDPAQKNT
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNT 312

Query: 304 LLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           LLVFKFLPLMIGYF+LSVPSGLSIYWL +++
Sbjct: 313 LLVFKFLPLMIGYFALSVPSGLSIYWLTNNV 343

Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2

 Score =  502 bits (1293), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/336 (76%), Positives = 284/336 (84%), Gaps = 17/336 (5%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRL--PNRRLASTRVRLSFQEIPPILSLDSSI 58
           M KTLISSP F+GTPLPS         LHR   PNR    T+V+ SF ++PPI S+  S+
Sbjct: 1   MAKTLISSPSFLGTPLPS---------LHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSV 51

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           DL+ +F+R E LLYTLADA V+        A+ S D A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 52  DLSGIFARAEGLLYTLADATVAA------DAAASTDVAAQKNGGWFGFISDGMEFVLKVL 105

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQ
Sbjct: 106 KDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQ 165

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 166 ERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 225

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PT+IAARQSGSGISWL PFVDGHP LGW+DTAAYLVLPVLL+VSQY SME+MKPPQT+DP
Sbjct: 226 PTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDP 285

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
            QKNTLL+FKFLPLMIGYFSLSVPSGL+IYW  +++
Sbjct: 286 NQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNV 321

May be required for the insertion of some integral membrane proteins into the chloroplast thylakoid membrane. May play a role in inhibiting senescence.

Pisum sativum (taxid: 3888)

>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/267 (70%), Positives = 227/267 (85%), Gaps = 2/267 (0%)

Query: 68  ESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
           E+LLYT+ADAAVS        A T+    T ++  WF  I+  ME +LK+LKDG+  VHV
Sbjct: 63  ENLLYTIADAAVSSSETFESVAGTTT--KTTQSNDWFSGIANYMETILKVLKDGLSTVHV 120

Query: 128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
           PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct: 121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query: 188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
           LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct: 181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query: 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVF 307
           GSGISWL PF++GHPPLGW DT AYLVLP+LLV SQY S+++M+  Q++DPA K++  V 
Sbjct: 241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVT 300

Query: 308 KFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           K LPLMIGYF+LSVPSGLS+YWL ++I
Sbjct: 301 KLLPLMIGYFALSVPSGLSLYWLTNNI 327

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1

 Score =  313 bits (803), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 146/238 (61%), Positives = 188/238 (78%), Gaps = 5/238 (2%)

Query: 97  TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES 156
           T   GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVATFPLT+KQVES
Sbjct: 67  TLAEGGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVES 126

Query: 157 TLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQA 216
           TL++Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY A
Sbjct: 127 TLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNA 186

Query: 217 LSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLP 276
           LSN A EGLLTEGFFWIPSL GPTTI     G G+ WL+PF +G PP+GW + AAYLV+P
Sbjct: 187 LSNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMP 241

Query: 277 VLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           VLLV SQYAS +++      DP+Q+    + KFLPLMIG+FSL+VPSGL++YW V+++
Sbjct: 242 VLLVASQYASQKIISSQNNQDPSQQQAQAILKFLPLMIGWFSLNVPSGLTLYWFVNNL 299

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.1.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1

 Score =  291 bits (744), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 145/254 (57%), Positives = 196/254 (77%), Gaps = 11/254 (4%)

Query: 88  AASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATF 147
           A  ++A  A Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T+
Sbjct: 98  AVDSAAGAAPQRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTY 157

Query: 148 PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATI 207
           PLTK+QVES +A+Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATI
Sbjct: 158 PLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATI 217

Query: 208 PVWIGLYQALSNVANEGLL-TEGFFWIPSLSGPTTIAARQSGSGISWLLPF-VDGHPPLG 265
           P++IGL+ +L+NVAN+GLL T+GF+++PSL+GPTT+A RQSG G SWL P   DG PP+G
Sbjct: 218 PIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIG 277

Query: 266 WHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKN-----TLLVFKFLPLMIGYFSLS 320
           W D AAYL LP+LLV  QYAS  +  PP   DP  +N      LLV  FLPLM+G+FSL+
Sbjct: 278 WEDAAAYLTLPLLLVAVQYASSSVTSPPI--DPKDENANTQRALLV--FLPLMVGWFSLN 333

Query: 321 VPSGLSIYWLVSHI 334
           VP+GLS+Y+L + +
Sbjct: 334 VPAGLSLYYLANTV 347

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.2.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1

 Score =  128 bits (321), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 130/240 (54%), Gaps = 32/240 (13%)

Query: 96  ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVE 155
           A+  + GWF FI++ + +VL             +++G AIILLT+++K+  +PLT+K  +
Sbjct: 332 ASAVDYGWFTFIAKPLVYVLDWF------YRYTHNWGVAIILLTIVIKILFWPLTQKSYQ 385

Query: 156 STLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 215
           S   M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+
Sbjct: 386 SMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYR 445

Query: 216 ALSNVANEGLLTEGF-FWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLV 274
            L+      L  E F  WI  L+ P  +        I + +P++ G P           V
Sbjct: 446 MLNGAVE--LRHEPFMLWIDDLTAPDRLP-------IGFDIPYLGGLP-----------V 485

Query: 275 LPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           L +L+ ++ +   ++   P   DP Q   +++   +P+M   F ++ PSGL +YWLV+++
Sbjct: 486 LTLLMGITMFIQQKMT--PSAGDPRQDQIMMI---MPVMFTVFFVNFPSGLVLYWLVNNV 540

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|C3LP77|YIDC_VIBCM Membrane protein insertase YidC OS=Vibrio cholerae serotype O1 (strain M66-2) GN=yidC PE=3 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 49/237 (20%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct: 329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct: 383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALME-- 440

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAA---YLVLPV 277
                              ++  R S              P  GW HD +A   Y +LP+
Sbjct: 441 -------------------SVELRHS--------------PFFGWIHDLSAQDPYYILPL 467

Query: 278 LLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           L+  S +  ++ M P    DP Q+    +  F+P+M  +F L  PSGL +YWLVS+I
Sbjct: 468 LMGASMFV-IQKMSPTTITDPMQQK---IMTFMPVMFTFFFLWFPSGLVLYWLVSNI 520

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

>sp|Q9KVY4|YIDC_VIBCH Membrane protein insertase YidC OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=yidC PE=3 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 49/237 (20%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct: 329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct: 383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALME-- 440

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAA---YLVLPV 277
                              ++  R S              P  GW HD +A   Y +LP+
Sbjct: 441 -------------------SVELRHS--------------PFFGWIHDLSAQDPYYILPL 467

Query: 278 LLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           L+  S +  ++ M P    DP Q+    +  F+P+M  +F L  PSGL +YWLVS+I
Sbjct: 468 LMGASMFV-IQKMSPTTITDPMQQK---IMTFMPVMFTFFFLWFPSGLVLYWLVSNI 520

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

>sp|A5F484|YIDC_VIBC3 Membrane protein insertase YidC OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=yidC PE=3 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 49/237 (20%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct: 329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct: 383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALME-- 440

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAA---YLVLPV 277
                              ++  R S              P  GW HD +A   Y +LP+
Sbjct: 441 -------------------SVELRHS--------------PFFGWIHDLSAQDPYYILPL 467

Query: 278 LLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           L+  S +  ++ M P    DP Q+    +  F+P+M  +F L  PSGL +YWLVS+I
Sbjct: 468 LMGASMFV-IQKMSPTTITDPMQQK---IMTFMPVMFTFFFLWFPSGLVLYWLVSNI 520

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

>sp|O66103|YIDC_TREPA Membrane protein insertase YidC OS=Treponema pallidum (strain Nichols) GN=yidC PE=3 SV=2

 Score =  124 bits (312), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 18/201 (8%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIIL+T+ +KV  FPLTK+   +   MQ LQP ++ IQ+RY GN ++I  E ++LY
Sbjct: 416 NWGVAIILVTIAIKVLFFPLTKRSFIAMQKMQELQPHMQRIQERYKGNTQKIHEEMAKLY 475

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           R+A  NPL+GCLPTL  +P+   +Y+  +N           +WIP LS   ++       
Sbjct: 476 REAQYNPLSGCLPTLVQMPIIFAMYRLFNNYFEFRGAMFIPYWIPDLSLADSV------- 528

Query: 250 GISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKF 309
              W LPF    P   W       +LPVL VVSQ    +L + P T+   QK ++ +  +
Sbjct: 529 ---WTLPF--ALPVTQWTQMR---MLPVLYVVSQIMFSKLTQVPHTEQ--QKTSMTIMTY 578

Query: 310 -LPLMIGYFSLSVPSGLSIYW 329
            +PL   +F    PSGL +YW
Sbjct: 579 VMPLFFFFFFYDAPSGLLVYW 599

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Treponema pallidum (strain Nichols) (taxid: 243276)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
156530446	452	chloroplast PPF-1 [Citrus trifoliata]	0.979	0.736	0.973	1e-175
449464930	453	PREDICTED: inner membrane protein PPF-1,	0.970	0.728	0.809	1e-155
225434998	455	PREDICTED: inner membrane protein PPF-1,	0.973	0.727	0.824	1e-153
224054791	451	inner membrane protein [Populus trichoca	0.961	0.725	0.794	1e-147
255581095	449	Inner membrane protein PPF-1, chloroplas	0.952	0.721	0.810	1e-144
15226968	462	inner membrane protein ALBINO3 [Arabidop	0.926	0.681	0.755	1e-142
356542455	450	PREDICTED: inner membrane protein PPF-1,	0.958	0.724	0.776	1e-141
30684018	348	inner membrane protein ALBINO3 [Arabidop	0.920	0.899	0.765	1e-141
297826255	458	hypothetical protein ARALYDRAFT_901831 [	0.923	0.685	0.768	1e-141
21592693	462	chloroplast membrane protein ALBINO3 [Ar	0.926	0.681	0.752	1e-141

>gi|156530446|gb|ABU75304.1| chloroplast PPF-1 [Citrus trifoliata]

 Score =  620 bits (1599), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 325/334 (97%), Positives = 329/334 (98%), Gaps = 1/334 (0%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60
           M KTLISSPPFVGTPLPSPSSSLSRHGLH LPNRRLASTRVRLSFQEIPPILSLDSSIDL
Sbjct: 1   MAKTLISSPPFVGTPLPSPSSSLSRHGLHPLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60

Query: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120
           NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD
Sbjct: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120

Query: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180
           GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER
Sbjct: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180

Query: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240
           IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT
Sbjct: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240

Query: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQ 300
           TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA ME+MKPPQTDDPAQ
Sbjct: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA-MEIMKPPQTDDPAQ 299

Query: 301 KNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           KNTLLVFKFLPLMIGYFSLSVPSGLSIYW  +++
Sbjct: 300 KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV 333

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464930|ref|XP_004150182.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus] gi|449524424|ref|XP_004169223.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/336 (80%), Positives = 297/336 (88%), Gaps = 6/336 (1%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRH-GLHRLPNRRLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISS PFVG+ LPS    LSRH  LH LP+RR  +TRV  SF ++PP+ +  SS+D
Sbjct: 1   MAKTLISSSPFVGSSLPS----LSRHLPLHTLPHRRHLTTRVNFSFHQLPPVHTFHSSLD 56

Query: 60  LNSVFSRTESLLYTLADAAVSLDSA-SGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
             ++ SRTE LLYTLADAAV++DS  S  A STS D A QKNGGWFGFIS+AME VLK+L
Sbjct: 57  FQAIVSRTEGLLYTLADAAVAVDSTLSAAATSTSPDTAVQKNGGWFGFISDAMEVVLKVL 116

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           K  ++AVH+PYSYGFAIILLT+IVKVATFPLTK+QVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 117 KGSLEAVHIPYSYGFAIILLTIIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQ 176

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 177 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 236

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSG+GISWLLPFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 237 PTTIAARQSGAGISWLLPFVDGHPPLGWSDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 296

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           AQKNTLL+FKFLPLMIGYFSLSVPSGLSIYW  +++
Sbjct: 297 AQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNV 332

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434998|ref|XP_002284077.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 1 [Vitis vinifera]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/336 (82%), Positives = 300/336 (89%), Gaps = 5/336 (1%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGL-HRLPNRRLASTRVRLSFQEIPPILSLDSS-I 58
           M +TLISSPPF+G PLPS SS   RHGL H LP+RRL STRV+ S  ++PPI SLDSS I
Sbjct: 1   MARTLISSPPFIGKPLPSLSS---RHGLLHSLPHRRLISTRVKFSLHDLPPIHSLDSSSI 57

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D   + SR ESLLYTLADAAVS D A+ G AS +AD A QKNGGWFGFISE ME VLK+L
Sbjct: 58  DFAGIVSRAESLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVVLKVL 117

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           +DG+ AVHVPY+YGFAIILLTVIVK+AT+PLTKKQVESTLAMQNLQPKIKAIQ+RY GNQ
Sbjct: 118 EDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERYKGNQ 177

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 178 ERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 237

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL+PFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 238 PTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 297

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           +QKNTLLVFKFLPLMIGYFSLSVPSGLSIYW  +++
Sbjct: 298 SQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054791|ref|XP_002298365.1| inner membrane protein [Populus trichocarpa] gi|222845623|gb|EEE83170.1| inner membrane protein [Populus trichocarpa]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/336 (79%), Positives = 294/336 (87%), Gaps = 9/336 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQE-IPPILS-LDSSI 58
           M +TL+SSPPF+GTPLPS    LSRH L    NRR  STR++LS  + IPPI   L SS+
Sbjct: 1   MARTLLSSPPFIGTPLPS----LSRHAL--TTNRRFISTRIKLSLHDNIPPIHHHLHSSV 54

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D N++ SR E  LYTLADAAV++DSA+   +S +AD A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 55  DFNTIISRAEGFLYTLADAAVAVDSAASTTSSDTADAA-QKNGGWFGFISDGMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPY+YGFAIILLT+ VKVAT PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 114 KDGLSSVHVPYAYGFAIILLTIAVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL PFVDGHPPLGWHDTAAYLVLPVLL+ SQY SME+MKPPQTDDP
Sbjct: 234 PTTIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLIASQYVSMEIMKPPQTDDP 293

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
            QKNTLLVFKFLP+MIGYFSLSVPSGLSIYW  +++
Sbjct: 294 TQKNTLLVFKFLPIMIGYFSLSVPSGLSIYWFTNNV 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581095|ref|XP_002531362.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis] gi|223529022|gb|EEF31010.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 273/337 (81%), Positives = 296/337 (87%), Gaps = 13/337 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHR--LPNRR-LASTRVRLSFQEIPPILSLDSS 57
           M KTLISSP F+G PLPS SS   RHGL    LP+RR +++T+V+ S  EIPPI  LDS 
Sbjct: 1   MAKTLISSPSFIGAPLPSSSS---RHGLQHSLLPSRRFISTTKVKFSLHEIPPITHLDS- 56

Query: 58  IDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKI 117
           +D NS+ SR ESLLYTLADAAV++       +S + D A QKN GWFGFISE MEFVLK+
Sbjct: 57  VDFNSIVSRAESLLYTLADAAVAV------DSSAATDTAVQKNNGWFGFISEGMEFVLKV 110

Query: 118 LKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177
           LKDG+ +VHVPYSYGFAIILLTVIVK+AT PLTK+QVESTLAMQNLQPKIKAIQQRYAGN
Sbjct: 111 LKDGLSSVHVPYSYGFAIILLTVIVKIATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGN 170

Query: 178 QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLS 237
           QERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL 
Sbjct: 171 QERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLG 230

Query: 238 GPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDD 297
           GPTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLLVVSQY SME+MKPPQTDD
Sbjct: 231 GPTTIAARQSGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLVVSQYVSMEIMKPPQTDD 290

Query: 298 PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW V+++
Sbjct: 291 PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFVNNV 327

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226968|ref|NP_180446.1| inner membrane protein ALBINO3 [Arabidopsis thaliana] gi|38372238|sp|Q8LBP4.2|ALB3_ARATH RecName: Full=Inner membrane protein ALBINO3, chloroplastic; Flags: Precursor gi|2209332|gb|AAB61458.1| chloroplast membrane protein ALBINO3 [Arabidopsis thaliana] gi|3927828|gb|AAC79585.1| chloroplast membrane protein (ALBINO3) [Arabidopsis thaliana] gi|27311661|gb|AAO00796.1| chloroplast membrane protein (ALBINO3) [Arabidopsis thaliana] gi|30387561|gb|AAP31946.1| At2g28800 [Arabidopsis thaliana] gi|330253078|gb|AEC08172.1| inner membrane protein ALBINO3 [Arabidopsis thaliana]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/331 (75%), Positives = 277/331 (83%), Gaps = 16/331 (4%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNT 303
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQTDDPAQKNT
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNT 312

Query: 304 LLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           LLVFKFLPLMIGYF+LSVPSGLSIYWL +++
Sbjct: 313 LLVFKFLPLMIGYFALSVPSGLSIYWLTNNV 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542455|ref|XP_003539682.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 261/336 (77%), Positives = 285/336 (84%), Gaps = 10/336 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNR-RLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISSP F+GTPLPS    L RH    LP+R R  +T+V +S  EIPPI SL  SID
Sbjct: 1   MAKTLISSPSFIGTPLPS----LPRH---HLPHRTRFVTTKVHVSLHEIPPIQSLSHSID 53

Query: 60  LNSVFSRTESLLYTLADAAVSLDSASGGAASTSA-DGATQKNGGWFGFISEAMEFVLKIL 118
              + +R E LLYTLADAAV+ D A     + S  D A QK+GGWFGFISEAMEFVLK+L
Sbjct: 54  FAGIVTRAEGLLYTLADAAVAADPAVAADTAASTTDAAVQKSGGWFGFISEAMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ RYAGNQ
Sbjct: 114 KDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSG+GISWL PFVDGHPPLGW DTAAYLVLP+LLVVSQY SME+MKPPQT DP
Sbjct: 234 PTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQT-DP 292

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           +QKN LL+ KFLPLMIGYFSLSVPSGL+IYW ++++
Sbjct: 293 SQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNV 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684018|ref|NP_850125.1| inner membrane protein ALBINO3 [Arabidopsis thaliana] gi|330253079|gb|AEC08173.1| inner membrane protein ALBINO3 [Arabidopsis thaliana]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/329 (76%), Positives = 276/329 (83%), Gaps = 16/329 (4%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNT 303
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQTDDPAQKNT
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNT 312

Query: 304 LLVFKFLPLMIGYFSLSVPSGLSIYWLVS 332
           LLVFKFLPLMIGYF+LSVPSGLSIYWLVS
Sbjct: 313 LLVFKFLPLMIGYFALSVPSGLSIYWLVS 341

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826255|ref|XP_002881010.1| hypothetical protein ARALYDRAFT_901831 [Arabidopsis lyrata subsp. lyrata] gi|297326849|gb|EFH57269.1| hypothetical protein ARALYDRAFT_901831 [Arabidopsis lyrata subsp. lyrata]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/328 (76%), Positives = 276/328 (84%), Gaps = 14/328 (4%)

Query: 16  LPSPSSSLSRHGL------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSVFSRT 67
           L  PSSSL   G       +R  N +L   ST VR S  EIPP   LDSS+D+ ++ +R 
Sbjct: 17  LIKPSSSLRHSGGGAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAILTRA 76

Query: 68  ESLLYTLADAAVSLDSASGGAASTSADG-ATQKNGGWFGFISEAMEFVLKILKDGIDAVH 126
           ESLLYT+ADAAV      G  +  S D  A QK+GGWFGFIS+ ME VLKILKDG+ AVH
Sbjct: 77  ESLLYTIADAAVV-----GADSVVSTDSSAVQKSGGWFGFISDGMELVLKILKDGLSAVH 131

Query: 127 VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS 186
           VPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS
Sbjct: 132 VPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETS 191

Query: 187 RLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQ 246
           RLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL GPTTIAARQ
Sbjct: 192 RLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQ 251

Query: 247 SGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLV 306
           SGSGISWL PFVDGHPPLGW+DTAAYLVLPVLL+ SQY SME+MKPPQTDDPAQKNTLLV
Sbjct: 252 SGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLV 311

Query: 307 FKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           FKFLPLMIGYF+LSVPSGLSIYW  +++
Sbjct: 312 FKFLPLMIGYFALSVPSGLSIYWFTNNV 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592693|gb|AAM64642.1| chloroplast membrane protein ALBINO3 [Arabidopsis thaliana]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/331 (75%), Positives = 276/331 (83%), Gaps = 16/331 (4%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ S+
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGSI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QA VNPLAGCLPTLATIPVWIGLYQALSN+ANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQASVNPLAGCLPTLATIPVWIGLYQALSNLANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNT 303
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQTDDPAQKNT
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNT 312

Query: 304 LLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           LLVFKFLPLMIGYF+LSVPSGLSIYWL +++
Sbjct: 313 LLVFKFLPLMIGYFALSVPSGLSIYWLTNNV 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2053230	462	ALB3 "ALBINO 3" [Arabidopsis t	0.876	0.645	0.720	1.5e-113
TAIR|locus:2809836	499	ALB4 "AT1G24490" [Arabidopsis	0.779	0.531	0.644	5.7e-91
UNIPROTKB|Q3AG58	223	CHY_0004 "Sporulation associat	0.376	0.573	0.379	8.6e-30
TIGR_CMR|CHY_0004	223	CHY_0004 "sporulation associat	0.376	0.573	0.379	8.6e-30
UNIPROTKB|Q9KVY4	541	yidC "Membrane protein inserta	0.376	0.236	0.386	3.8e-28
TIGR_CMR|VC_0004	541	VC_0004 "inner membrane protei	0.376	0.236	0.386	3.8e-28
UNIPROTKB|Q71VQ8	287	yidC1 "Membrane protein insert	0.314	0.372	0.412	5.8e-27
UNIPROTKB|Q5HUK1	530	yidC "Membrane protein inserta	0.379	0.243	0.375	7.2e-27
TIGR_CMR|CJE_1038	530	CJE_1038 "inner membrane prote	0.379	0.243	0.375	7.2e-27
UNIPROTKB|Q746Q2	531	yidC "Membrane protein inserta	0.329	0.210	0.381	4.4e-23

TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 219/304 (72%), Positives = 238/304 (78%)

Query:    33 NRRL--ASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXX 90
             N +L   ST VR S  E              ++F+R ESLLY                  
Sbjct:    44 NNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDS 103

Query:    91 XXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLT 150
                    QK+GGWFGFIS+AME VLKILKDG+ AVHVPY+YGFAIILLT+IVK AT+PLT
Sbjct:   104 SAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLT 159

Query:   151 KKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVW 210
             K+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVW
Sbjct:   160 KQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVW 219

Query:   211 IGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTA 270
             IGLYQALSNVANEGL TEGFFWIPSL GPT+IAARQSGSGISWL PFVDGHPPLGW+DT 
Sbjct:   220 IGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTV 279

Query:   271 AYXXXXXXXXXSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWL 330
             AY         SQY SME+MKPPQTDDPAQKNTLLVFKFLPLMIGYF+LSVPSGLSIYWL
Sbjct:   280 AYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWL 339

Query:   331 VSHI 334
              +++
Sbjct:   340 TNNV 343

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)]

 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 172/267 (64%), Positives = 207/267 (77%)

Query:    68 ESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
             E+LLY                         Q N  WF  I+  ME +LK+LKDG+  VHV
Sbjct:    63 ENLLYTIADAAVSSSETFESVAGTTTKTT-QSND-WFSGIANYMETILKVLKDGLSTVHV 120

Query:   128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
             PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct:   121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query:   188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
             LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct:   181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query:   248 GSGISWLLPFVDGHPPLGWHDTAAYXXXXXXXXXSQYASMELMKPPQTDDPAQKNTLLVF 307
             GSGISWL PF++GHPPLGW DT AY         SQY S+++M+  Q++DPA K++  V 
Sbjct:   241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVT 300

Query:   308 KFLPLMIGYFSLSVPSGLSIYWLVSHI 334
             K LPLMIGYF+LSVPSGLS+YWL ++I
Sbjct:   301 KLLPLMIGYFALSVPSGLSLYWLTNNI 327

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|Q9KVY4 yidC "Membrane protein insertase YidC" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 233 (87.1 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0004 VC_0004 "inner membrane protein, 60 kDa" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 233 (87.1 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 241 (89.9 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 47/114 (41%), Positives = 74/114 (64%)

Query:   130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN----QERIQLET 185
             SY   II++T+++++   PL  KQ++S  AM NLQPKIK +Q++Y+      ++++Q ET
Sbjct:    64 SYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIKELQEKYSSKDNETKQKLQQET 123

Query:   186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP 239
              RLY++  VNP+ GCLP L  +P+ +G YQA+S  A   + T+ F W+  L  P
Sbjct:   124 MRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE--IKTDSFLWM-QLGNP 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 7.2e-27, Sum P(2) = 7.2e-27
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 7.2e-27, Sum P(2) = 7.2e-27
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q746Q2 yidC "Membrane protein insertase YidC" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 215 (80.7 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
 Identities = 45/118 (38%), Positives = 69/118 (58%)

Query:   100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLA 159
             N GWF  +++ +   LK   +         +YG AII++TVI+KV  +PLT    +S   
Sbjct:   320 NLGWFAMLAKPLLHSLKFFHNYTG------NYGIAIIIITVIIKVIFYPLTHSSYKSMKE 373

Query:   160 MQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             MQ LQPK++ ++++Y  ++E +      LY+   VNP+ GCLP L  IPV+  LY+AL
Sbjct:   374 MQKLQPKMQQLREKYKNDREAMNRAMMELYQTHKVNPVGGCLPMLVQIPVFFALYKAL 431

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBP4	ALB3_ARATH	No assigned EC number	0.7552	0.9264	0.6818	yes	no
Q9FY06	PPF1_PEA	No assigned EC number	0.7619	0.9382	0.7217	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024358001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (455 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034124001	RecName- Full=50S ribosomal protein L34; (147 aa)	•			•					0.724
	GSVIVG00015270001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (752 aa)	•						•		0.651
	GSVIVG00016972001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)				•	•		•		0.591
	GSVIVG00026227001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (367 aa)					•		•		0.546
	GSVIVG00036245001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (370 aa)				•	•		•		0.514

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	3e-62
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	5e-61
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	8e-50
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	3e-41
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	3e-37
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	1e-29
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	9e-29
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	3e-28
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	1e-27
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	4e-23
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	4e-18
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	4e-14
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	1e-13
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	3e-12

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  196 bits (501), Expect = 3e-62
 Identities = 74/205 (36%), Positives = 112/205 (54%), Gaps = 31/205 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT++V++   PLT KQ +S   MQ LQP+IK IQ++Y  + +++Q E  +LY
Sbjct: 2   NWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDPQKLQQEMMKLY 61

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSG 248
           ++ GVNPLAGCLP L  +P++I LY+AL N+A    L T GF WI  LS P         
Sbjct: 62  KEHGVNPLAGCLPMLIQLPIFIALYRALRNMAELRSLETAGFLWIKDLSAPDP------- 114

Query: 249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTL-LVF 307
                                  Y +LP+L  ++ +   +L       D  Q   + ++ 
Sbjct: 115 ----------------------PYFILPILAGLTMFLQQKLSPSQDPPDLQQSAQMKIMM 152

Query: 308 KFLPLMIGYFSLSVPSGLSIYWLVS 332
             +PL+  +F L+ P+GL +YW+VS
Sbjct: 153 YIMPLIFLFFFLNFPAGLVLYWIVS 177

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  192 bits (491), Expect = 5e-61
 Identities = 73/205 (35%), Positives = 107/205 (52%), Gaps = 35/205 (17%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT+IV++   PLT KQ +S   MQ LQPK+K IQ++Y  + +++Q E  +LY
Sbjct: 1   NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLY 60

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           ++ GVNPL GCLP L  +P++I LYQ L       L    F WI  LS P          
Sbjct: 61  KEEGVNPLGGCLPLLIQMPIFIALYQVLRRS--IELRHAPFLWIQDLSAP---------- 108

Query: 250 GISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKF 309
                                 Y +LP+L+ V+ +   +L      D   QK  +     
Sbjct: 109 --------------------DPYYILPILMGVTMFLQQKLSPSGPPDPAQQKIMM---YI 145

Query: 310 LPLMIGYFSLSVPSGLSIYWLVSHI 334
           +P+M  +F LS P+GL +YW+VS++
Sbjct: 146 MPVMFLFFFLSFPAGLVLYWVVSNL 170

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score =  173 bits (441), Expect = 8e-50
 Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 55/242 (22%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L  L   +       ++G+AIILLT+IVK+  FPLT K   S   M+
Sbjct: 300 GWLWFITKPLFWLLDFLHSFVG------NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMK 353

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++ ++++Y  + +++Q E   LY++  VNPL GCLP L  IP++  LY+ L    
Sbjct: 354 VLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVL---- 409

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAAY-------- 272
                              +I  R +        PF      +GW HD +A         
Sbjct: 410 -----------------LVSIELRHA--------PF------IGWIHDLSAPDPYFILHI 438

Query: 273 LVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVS 332
            +LP+L+ ++ +   +L   P   DP Q     + KF+PL+  +F LS P+GL +YW+V+
Sbjct: 439 GLLPILMGITMFLQQKLN--PTPTDPMQAK---IMKFMPLIFTFFFLSFPAGLVLYWIVN 493

Query: 333 HI 334
           ++
Sbjct: 494 NL 495

Length = 521

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  145 bits (368), Expect = 3e-41
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 36/234 (15%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GWF  I   +  +L  +           ++G +IILLT+IV++  FPL++K   S   MQ
Sbjct: 86  GWFWNILAPLFPLLLFID-----SFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQ 140

Query: 162 NLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 220
            LQPKIK IQ++Y G  +++ Q E  +LY++  VNPLAGCLP L  +P++I LY  L + 
Sbjct: 141 ELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRST 200

Query: 221 ANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLV 280
                      WI  LS P                       P         L+LP+L  
Sbjct: 201 VELR-GAPFLGWITDLSLPD----------------------PDYI------LLLPILAG 231

Query: 281 VSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           V+ +   +L     +     +   +    +P++  +F  + P+GL +YW+VS++
Sbjct: 232 VTMFLQQKLSPRNLSTPQDPQQKKM-MYIMPIIFTFFFFNFPAGLVLYWIVSNL 284

Length = 314

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score =  132 bits (335), Expect = 3e-37
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 36/233 (15%)

Query: 104 FGFISEAMEFVLKILKDGIDAV--HVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             +++ A     K +   + +V  +  +SYG AIIL+T+I+++   PL  KQ +S+L M 
Sbjct: 2   MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMN 61

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP+IK +Q +Y  + +++Q E  +LY++ GVNPL GCLP L   P+ I LY   +N+ 
Sbjct: 62  EIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNL- 120

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVV 281
             G+    F WI  L+ P                                  +LP+L   
Sbjct: 121 -TGINGVSFLWIKDLAKP------------------------------DITWILPILSGA 149

Query: 282 SQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           + Y S  LM    +    Q  T+ +   + + +G  S    S L +YW++ ++
Sbjct: 150 TTYLSGYLMTKADSSQAGQMKTMNI--GMSIFMGVMSWKFKSALVLYWVIGNL 200

Length = 223

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score =  119 bits (299), Expect = 1e-29
 Identities = 82/247 (33%), Positives = 117/247 (47%), Gaps = 48/247 (19%)

Query: 102 GWFGFISE---AMEFVL-KILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVEST 157
           G+F FI+E   A+ F++ K  K       +  S+G +IILLTV +K+  +PL    + S 
Sbjct: 549 GFFSFITEPFAALLFIIMKFFK------FLTGSWGISIILLTVFLKLLLYPLNAWSIRSM 602

Query: 158 LAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             MQ L P I+ IQQ+Y    +R Q+E   LY+   VNP+ GCLP L  +P  I ++  L
Sbjct: 603 RRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLL 662

Query: 218 SNVANEGLLTEGFF---WIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLV 274
               +  LL    F   WI +L+ P  +         SW  P         W     + +
Sbjct: 663 K---SSFLLRGASFIPGWIDNLTAPDVL--------FSWETPI--------WFIGNEFHL 703

Query: 275 LPVLLVVSQYASMELM----KPPQTDDPAQKNTL-----LVFKFLPLMIGYFSLSVPSGL 325
           LP+LL V  +A  ++     K P TD   Q+  +     L+F F   M   F    PSGL
Sbjct: 704 LPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTF---MFYNF----PSGL 756

Query: 326 SIYWLVS 332
           +IYWL S
Sbjct: 757 NIYWLSS 763

Length = 795

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score =  112 bits (283), Expect = 9e-29
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 36/223 (16%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +I+ L ++++    PL  KQ++S   MQ +QPK+K IQ++Y G++ER+  E  +LY
Sbjct: 41  TWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRERMSQEMMKLY 100

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE----GLLTEG---------FFWIPSL 236
           ++ G NPL+ CLP L  +P++  LY+ L + A+     G +             F  P L
Sbjct: 101 KETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGAP-L 159

Query: 237 SGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQ-YASMELMK---P 292
           +  T + A  +G+    ++                  VL +L+  SQ    ++LM    P
Sbjct: 160 AA-TFLQALNAGNTAVQVVA----------------AVLIILMSASQFITQLQLMTKNMP 202

Query: 293 PQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           P+    P  +   ++    PLM     ++ P G+  YWL S++
Sbjct: 203 PEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNV 245

Length = 329

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score =  109 bits (275), Expect = 3e-28
 Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 41/210 (19%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRY----AGNQERIQLET 185
           +YG AII++T+++++   PL  KQ +ST AMQ LQP+++ ++++Y       Q+++Q E 
Sbjct: 58  NYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEM 117

Query: 186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAAR 245
            +L+++ GVNPLAGCLP    +P+ I  Y A+   +        F W             
Sbjct: 118 MQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEIS--KHSFLW------------- 162

Query: 246 QSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL-MKPPQTDDPAQKNTL 304
                      F  G           Y +LP++  ++ +   +L M      +P     L
Sbjct: 163 -----------FDLGQAD-------PYYILPIVAGITTFIQQKLMMAGTAGQNPQMAMML 204

Query: 305 LVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
            +   +P+MI  F+++ P+ LS+YW+V +I
Sbjct: 205 WL---MPIMILIFAINFPAALSLYWVVGNI 231

Length = 255

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score =  108 bits (271), Expect = 1e-27
 Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 52/258 (20%)

Query: 85  SGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKV 144
           SG + +   D  +  +G +  +      F+++ +     A H+  SYG AII++T+I++ 
Sbjct: 21  SGCSNAAPIDAHS--DGFFDHYFVYPFSFLIQFV-----AHHIGGSYGIAIIIVTLIIRS 73

Query: 145 ATFPLTKKQVESTLAMQN----LQPKIKAIQQRY-----AGNQERIQLETSRLYRQAGVN 195
              PL   Q +S   MQ     ++P++  IQ +         Q+  Q E   LY+   +N
Sbjct: 74  LMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNIN 133

Query: 196 PLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWL 254
           PLA GCLP L  +P+    Y A+     E + +  F W                      
Sbjct: 134 PLAMGCLPLLIQMPILSAFYYAIR--RTEEIASHSFLW---------------------- 169

Query: 255 LPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMI 314
             F  GH            +LP++  ++ +  M++ +   T     +   +    +P MI
Sbjct: 170 --FNLGHAD---------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMI 218

Query: 315 GYFSLSVPSGLSIYWLVS 332
            + S + PS L +YW+  
Sbjct: 219 LFMSFAAPSALVLYWITG 236

Length = 256

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score = 97.1 bits (242), Expect = 4e-23
 Identities = 31/88 (35%), Positives = 58/88 (65%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +++ L   ++   +    +Q+ +T  MQ LQP+IKA+Q++Y  +++++ LE  +L 
Sbjct: 31  AWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKMALEMQKLQ 90

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQAL 217
           ++ G NP+ GCLP LA IPV++GL+  L
Sbjct: 91  KEHGFNPILGCLPMLAQIPVFLGLFHVL 118

Length = 304

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 83.9 bits (208), Expect = 4e-18
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 16/120 (13%)

Query: 105 GFISEAMEFVLKILKD---GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GFIS  +  +L IL D   GI    VP SYG AI+ LT++++ A +PL+   + +   M+
Sbjct: 6   GFISNNV--MLPIL-DFFYGI----VP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMK 57

Query: 162 NLQP----KIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             QP    +   IQ+RY  + ++ Q E  +L ++ G NPLAGCLP L  +P+   L+  L
Sbjct: 58  IAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATL 116

Length = 375

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 72.6 bits (178), Expect = 4e-14
 Identities = 60/232 (25%), Positives = 99/232 (42%), Gaps = 37/232 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN------QERIQL 183
           ++  ++  L + V+    P T +Q +S     +++PK KA+++ Y G       +E  Q 
Sbjct: 31  AWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASIRELQQK 90

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTT 241
           +   L ++ G NPLAGC+P L  IPV++GLYQ L  +A    GL       I  L+    
Sbjct: 91  Q-KDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEV 149

Query: 242 ---IAARQSGSGISWLLPFVDGHPP-----LGW-HDTAAYLVLPVLLVVSQYA----SME 288
              +  R         LP     P      LG    T    VLP+ +  + +     +M 
Sbjct: 150 ESFLQGRVFNVP----LPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMS 205

Query: 289 LMKPPQTDDPAQKNTLLVFKFL----------PLMIGYFSLSVPSGLSIYWL 330
             +  QT+D      + + KFL          PL +G      P+ +++YW+
Sbjct: 206 TYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGLTG-PFPTAIALYWV 256

Length = 429

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 60/245 (24%), Positives = 98/245 (40%), Gaps = 53/245 (21%)

Query: 102 GW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQV-ESTL- 158
           G+ + F+   M + +        A ++   +G AII++T+IV++   PL   Q  ++T  
Sbjct: 35  GFIWNFLGAPMSYFIDYF-----ANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQ 89

Query: 159 --AMQNLQPKIKAIQQRY--AGNQER---IQLETSRLYRQAGVNPLA--GCLPTLATIPV 209
              M  L+P  + I +R   A  QE     Q E     R+ G++ L   GCLP L  +P 
Sbjct: 90  SEKMAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPF 149

Query: 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDT 269
           +  LY A      +G+ T  F  I                              LG    
Sbjct: 150 FSALYFAAQY--TKGVSTSTFLGI-----------------------------DLGSPSL 178

Query: 270 AAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW 329
               ++ VL     + SM  +   Q +    K  + +   +P+M+  FS S P+G+ +YW
Sbjct: 179 VLTAIIGVLYFFQSWLSMMGVPEEQRE--QMKAMMYM---MPIMMVVFSFSSPAGVGLYW 233

Query: 330 LVSHI 334
           LV   
Sbjct: 234 LVGGF 238

Length = 307

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 61/229 (26%)

Query: 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG------NQERIQLETS 186
            AII++ +I+++ +F +T K   +    + LQ K   I  +Y         ++R Q E  
Sbjct: 135 LAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQ 194

Query: 187 RLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQ 246
            LY++  ++P +  +    T+P++I +Y+ + +             +PS+    T     
Sbjct: 195 ELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQS-------------LPSIK--VTTWLGI 239

Query: 247 SGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ----------TD 296
             S  SW   F        W     YL + +++V  Q  S  L   PQ          T 
Sbjct: 240 DLSATSWQEIFAG-----NW----IYLPILIIVVPVQALSQLL---PQILNKKKNKERTL 287

Query: 297 DPAQKNTL-----------LVFKFLPLMIGYFSLSVPSGLSIYWLVSHI 334
           +  +K  L           +VF F       F +   +G+ IYW++  I
Sbjct: 288 NVKEKEALKKQNKTQNIISIVFIF-------FGVIFAAGVQIYWIIGGI 329

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
PRK02654	375	putative inner membrane protein translocase compon	100.0
KOG1239	372	consensus Inner membrane protein translocase invol	99.9
KOG1239	372	consensus Inner membrane protein translocase invol	98.88
COG1422	201	Predicted membrane protein [Function unknown]	96.87
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	88.24

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=3.8e-53  Score=399.61  Aligned_cols=205  Identities=28%  Similarity=0.645  Sum_probs=183.6

Q ss_pred             ccccCCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhh
Q 019510           96 ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA  175 (340)
Q Consensus        96 ~~~~~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk  175 (340)
                      +.+.+|.|+++|++|++++++++|+.+   |  .|||+||+++|+++|++++|++++|+|+++||+++|||+++|||||+
T Consensus        29 ~~~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk  103 (255)
T PRK02944         29 TPKSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYS  103 (255)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHc
Confidence            346678888999999999999999875   2  47999999999999999999999999999999999999999999999


Q ss_pred             hC----HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCc
Q 019510          176 GN----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGI  251 (340)
Q Consensus       176 ~d----~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~  251 (340)
                      +|    ++|+|+|+++||||||+||++||+|+|+|+|||+++|+++|++.  ++.++||+|+ ||+.+|           
T Consensus       104 ~~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~--~l~~~~flW~-dLs~~D-----------  169 (255)
T PRK02944        104 SKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTS--EISKHSFLWF-DLGQAD-----------  169 (255)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhH--HHhhcCCCcc-ccCcch-----------
Confidence            74    56789999999999999999999999999999999999999885  4778999999 999886           


Q ss_pred             cccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh
Q 019510          252 SWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLV  331 (340)
Q Consensus       252 ~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~t  331 (340)
                                         ||++||++++++++++++.......  ..+.+++.|++++|+++++|+.++|+|+.+||++
T Consensus       170 -------------------p~~iLPil~~~~~~~~~~~~~~~~~--~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~  228 (255)
T PRK02944        170 -------------------PYYILPIVAGITTFIQQKLMMAGTA--GQNPQMAMMLWLMPIMILIFAINFPAALSLYWVV  228 (255)
T ss_pred             -------------------HHHHHHHHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               8999999999999999887543211  1233567789999999999999999999999999


Q ss_pred             hhhhhhccC
Q 019510          332 SHINFTKSS  340 (340)
Q Consensus       332 sni~sl~qs  340 (340)
                      ||+++++|+
T Consensus       229 s~~~~i~Q~  237 (255)
T PRK02944        229 GNIFMIAQT  237 (255)
T ss_pred             HHHHHHHHH
Confidence            999999984

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=5.6e-52  Score=384.76  Aligned_cols=202  Identities=31%  Similarity=0.604  Sum_probs=180.9

Q ss_pred             HHHHHHHHHHHHHHHHhccccC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHH
Q 019510          105 GFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQ  182 (340)
Q Consensus       105 ~~i~~p~~~vL~~l~~~l~~~g--lp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q  182 (340)
                      .+|.++++.+++++|+.+..++  .+++||+||+++|+++|++++|++++|+|+++||+++|||+++||||||+|++|+|
T Consensus         3 ~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~~   82 (223)
T PRK00145          3 RYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKLQ   82 (223)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHH
Confidence            4667777888888887764321  24679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCccccccccCCCC
Q 019510          183 LETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHP  262 (340)
Q Consensus       183 ~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~~wl~p~~~~~~  262 (340)
                      +|+++||||||+||++||+|+++|+|||+++|+++|+++  ++.++||+|++||+.+|                      
T Consensus        83 ~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~--~~~~~~flW~~dLt~~D----------------------  138 (223)
T PRK00145         83 QEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLT--GINGVSFLWIKDLAKPD----------------------  138 (223)
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhh--hccCCCccChhhccCcc----------------------
Confidence            999999999999999999999999999999999999985  47889999999999887                      


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhccC
Q 019510          263 PLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS  340 (340)
Q Consensus       263 ~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~sl~qs  340 (340)
                              ||++||+++++++|++++.+.+..  .+..+.+|.|++++|+++++++.++|+|+++||++||+|+++|+
T Consensus       139 --------p~~iLPil~~~~~~l~~~~~~~~~--~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~  206 (223)
T PRK00145        139 --------ITWILPILSGATTYLSGYLMTKAD--SSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQT  206 (223)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHcCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    789999999999999998865432  23334678889999999999999999999999999999999985

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=2.3e-50  Score=380.95  Aligned_cols=203  Identities=26%  Similarity=0.520  Sum_probs=180.9

Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHH
Q 019510           98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR  173 (340)
Q Consensus        98 ~~~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~ks----s~km~~lqPel~~Iq~k  173 (340)
                      +.+|+|.+++++|+.++++++|+++   |  .+||+||+++|+++|++++|++++|+|+    ++||+++|||+++||||
T Consensus        32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~--~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k  106 (256)
T PRK01622         32 HSDGFFDHYFVYPFSFLIQFVAHHI---G--GSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK  106 (256)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence            4678888999999999999999976   3  4699999999999999999999999999    89999999999999999


Q ss_pred             hhh--CHH---HHHHHHHHHHHHcCCCCCC-CchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhc
Q 019510          174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS  247 (340)
Q Consensus       174 yk~--d~e---k~q~E~~~LyKk~gvnPl~-gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~  247 (340)
                      ||+  |++   ++|+|++++|||||+||++ ||+|+++|+|||+++|+++|++.  ++.++||+|+ ||+.+|       
T Consensus       107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D-------  176 (256)
T PRK01622        107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD-------  176 (256)
T ss_pred             HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence            987  543   5789999999999999999 99999999999999999999974  5889999999 898764       


Q ss_pred             CCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019510          248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI  327 (340)
Q Consensus       248 g~~~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~L  327 (340)
                                               ++||++++++++++++++.+...+.+.++.+|.|++++|+++++++.++|+|+++
T Consensus       177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~l  231 (256)
T PRK01622        177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVL  231 (256)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     5899999999999999866433222334567888899999999999999999999


Q ss_pred             HHhhhhhhhhccC
Q 019510          328 YWLVSHINFTKSS  340 (340)
Q Consensus       328 YW~tsni~sl~qs  340 (340)
                      ||++||+++++|+
T Consensus       232 YW~~snl~si~Q~  244 (256)
T PRK01622        232 YWITGGLFLMGQT  244 (256)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999985

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=2.8e-50  Score=418.44  Aligned_cols=221  Identities=32%  Similarity=0.584  Sum_probs=184.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHH
Q 019510          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (340)
Q Consensus       100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~e  179 (340)
                      .+||+++|+.|+.+++.++.+.++.  +..|||+|||++|++||++++|++++|+|+++||+++||||++||||||+|++
T Consensus       547 ~~GWf~fI~~Pia~~L~~ll~~fh~--l~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q  624 (795)
T PRK01001        547 FRGFFSFITEPFAALLFIIMKFFKF--LTGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK  624 (795)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence            4699999999987777555444432  22379999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccc--cccCCCCchhHhhhhcCCCccccccc
Q 019510          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLPF  257 (340)
Q Consensus       180 k~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gfl--W~~dLt~pd~i~~~~~g~~~~wl~p~  257 (340)
                      |+|+|+|+|||||||||++||+|+|+|+||||++|++++++.  .+...+|+  |++||+.+|++        ++|..|.
T Consensus       625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~si--eLRgasFLpgWI~DLSapDpl--------f~~~~~i  694 (795)
T PRK01001        625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSF--LLRGASFIPGWIDNLTAPDVL--------FSWETPI  694 (795)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhH--HhcCCchhhhhHhhccCCCcc--------ccccccc
Confidence            999999999999999999999999999999999999999875  35677887  99999999853        2232221


Q ss_pred             cCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhh
Q 019510          258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHIN  335 (340)
Q Consensus       258 ~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~--~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~  335 (340)
                              |-..+++.+||++++++++++++++....  ..++.+++++.|+++||+|+++++.++|+||++||++||++
T Consensus       695 --------~FiGd~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSNl~  766 (795)
T PRK01001        695 --------WFIGNEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLL  766 (795)
T ss_pred             --------cccccchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                    00113678999999999999999864321  11223445667778999999999999999999999999999


Q ss_pred             hhccC
Q 019510          336 FTKSS  340 (340)
Q Consensus       336 sl~qs  340 (340)
                      +++|.
T Consensus       767 SI~QQ  771 (795)
T PRK01001        767 GVIQQ  771 (795)
T ss_pred             HHHHH
Confidence            99983

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=3.4e-50  Score=411.59  Aligned_cols=199  Identities=38%  Similarity=0.760  Sum_probs=181.9

Q ss_pred             cCCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCH
Q 019510           99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ  178 (340)
Q Consensus        99 ~~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~  178 (340)
                      -++||+.+++.|+.++|+++|..+   |   |||+|||++|+++|++++|++++|+|+++||+++||||++||||||+|+
T Consensus       297 ~~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~  370 (521)
T PRK01318        297 VDYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDP  370 (521)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhH
Confidence            469999999999999999999864   2   7999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCchhHhhhhcCCCccccccc
Q 019510          179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF  257 (340)
Q Consensus       179 ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gfl-W~~dLt~pd~i~~~~~g~~~~wl~p~  257 (340)
                      +|+|+|+++|||||||||++||+|+|+|+||||++|++++++.+  +..++|+ |++||+.+|                 
T Consensus       371 ~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D-----------------  431 (521)
T PRK01318        371 QKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD-----------------  431 (521)
T ss_pred             HHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc-----------------
Confidence            99999999999999999999999999999999999999998753  7788998 999999987                 


Q ss_pred             cCCCCCCCcchhhHHHHH-----HHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhh
Q 019510          258 VDGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVS  332 (340)
Q Consensus       258 ~~~~~~~g~~~~~py~IL-----PIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~ts  332 (340)
                                   ||++|     |+++++++|++++++.++  .+++|   +.+|++||+++++++.++|+||++||++|
T Consensus       432 -------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~s  493 (521)
T PRK01318        432 -------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVN  493 (521)
T ss_pred             -------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         56677     999999999999987543  25543   34566799999999999999999999999


Q ss_pred             hhhhhccC
Q 019510          333 HINFTKSS  340 (340)
Q Consensus       333 ni~sl~qs  340 (340)
                      |+++++|.
T Consensus       494 n~~si~Q~  501 (521)
T PRK01318        494 NLLTIIQQ  501 (521)
T ss_pred             HHHHHHHH
Confidence            99999983

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=1.1e-49  Score=358.21  Aligned_cols=176  Identities=41%  Similarity=0.779  Sum_probs=164.0

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 019510          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (340)
Q Consensus       130 ~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPI  209 (340)
                      |||+||+++|+++|++++|++++|+|+++||+++|||++++|||||+|++|+++|++++|||||+||++||+|+++|+||
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi   80 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI   80 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHh
Q 019510          210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL  289 (340)
Q Consensus       210 fi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i  289 (340)
                      |+++|+++|++.  ++.++||+|++||+.+|                              ||++||+++++++++++++
T Consensus        81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~  128 (181)
T TIGR03592        81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL  128 (181)
T ss_pred             HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence            999999999974  58899999999999887                              8999999999999999998


Q ss_pred             cCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhccC
Q 019510          290 MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS  340 (340)
Q Consensus       290 ~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~sl~qs  340 (340)
                      +.+..+ ++  +++|.|++++|+++++++.++|+|+++||++||+|+++|+
T Consensus       129 ~~~~~~-~~--~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~  176 (181)
T TIGR03592       129 SPSGPP-DP--AQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQ  176 (181)
T ss_pred             cCCCCC-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655332 22  3567888999999999999999999999999999999984

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=8.3e-49  Score=378.37  Aligned_cols=200  Identities=28%  Similarity=0.494  Sum_probs=174.6

Q ss_pred             CCcc-hHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhccHHHHHHHHHh
Q 019510          100 NGGW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRY  174 (340)
Q Consensus       100 ~ggw-~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~ks----s~km~~lqPel~~Iq~ky  174 (340)
                      .+|| ++++++|+.++++++|+.+   |  .+||+|||++|++||++++|++++|+++    ++||+++|||+++|||||
T Consensus        33 ~~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Ky  107 (307)
T PRK02463         33 PTGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERL  107 (307)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            3566 4799999999999999865   3  4699999999999999999999988865    689999999999999999


Q ss_pred             hhC--H---HHHHHHHHHHHHHcCCCCCC--CchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhc
Q 019510          175 AGN--Q---ERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS  247 (340)
Q Consensus       175 k~d--~---ek~q~E~~~LyKk~gvnPl~--gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~  247 (340)
                      |++  +   +++|+|++++|||||+||++  ||+|+|+|+|||+++|+++++.  +++.+++|+|+ ||+.|        
T Consensus       108 k~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p--------  176 (307)
T PRK02463        108 KNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSP--------  176 (307)
T ss_pred             hcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCch--------
Confidence            862  2   35689999999999999998  8999999999999999999975  57889999999 88754        


Q ss_pred             CCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 019510          248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI  327 (340)
Q Consensus       248 g~~~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~L  327 (340)
                                              +++||++++++++++++++.... +++..++||.|+++||+|+++|+.++|+||++
T Consensus       177 ------------------------~~iLpii~~v~~~~q~~~~~~~~-~~~q~~~mk~m~~~~Pim~~~~~~~~PagL~l  231 (307)
T PRK02463        177 ------------------------SLVLTAIIGVLYFFQSWLSMMGV-PEEQREQMKAMMYMMPIMMVVFSFSSPAGVGL  231 (307)
T ss_pred             ------------------------hHHHHHHHHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                    46899999999999988754332 23334567889999999999999999999999


Q ss_pred             HHhhhhhhhhccC
Q 019510          328 YWLVSHINFTKSS  340 (340)
Q Consensus       328 YW~tsni~sl~qs  340 (340)
                      ||++||+|+++|+
T Consensus       232 YW~~snlfsi~Q~  244 (307)
T PRK02463        232 YWLVGGFFSIIQQ  244 (307)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999984

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.6e-47  Score=371.92  Aligned_cols=235  Identities=25%  Similarity=0.429  Sum_probs=174.6

Q ss_pred             CcchHHHHHHHHHHHHH----HHHhcccc-C--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHH
Q 019510          101 GGWFGFISEAMEFVLKI----LKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR  173 (340)
Q Consensus       101 ggw~~~i~~p~~~vL~~----l~~~l~~~-g--lp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~k  173 (340)
                      ++||++|++|++|+++.    +|+.++.+ |  .+++||+||+++|+++|++++|++++|+|+++||+++|||+++||||
T Consensus         5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k   84 (329)
T PRK01315          5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK   84 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            67999999998888844    46655422 2  23579999999999999999999999999999999999999999999


Q ss_pred             hhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCccc
Q 019510          174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW  253 (340)
Q Consensus       174 yk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~~w  253 (340)
                      ||+|++++++|+++||||||+||++||+|+|+|+|||+++|+++|++++.+  ..-.+|.+++...- ..+...|.+++.
T Consensus        85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~--~~~~~~~~~~~~s~-~~~~~fg~~L~~  161 (329)
T PRK01315         85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG--DGIGPINPPLLESF-RHAHIFGAPLAA  161 (329)
T ss_pred             HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchhhhHHHhh-hccccccccccc
Confidence            999999999999999999999999999999999999999999999875321  11112222222100 000000111110


Q ss_pred             cccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 019510          254 LLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIY  328 (340)
Q Consensus       254 l~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i-~~----~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LY  328 (340)
                      .+  .....+..+.....+++||+++++++|++++. +.    +.+.++++.+++|.|+++||+|+++++.++|+||++|
T Consensus       162 ~f--~~~~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~LY  239 (329)
T PRK01315        162 TF--LQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFY  239 (329)
T ss_pred             cc--cccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00  00000111112235789999999999998753 22    2223356667788899999999999999999999999


Q ss_pred             HhhhhhhhhccC
Q 019510          329 WLVSHINFTKSS  340 (340)
Q Consensus       329 W~tsni~sl~qs  340 (340)
                      |++||+|+++|+
T Consensus       240 W~~snl~si~Qq  251 (329)
T PRK01315        240 WLTSNVWTMGQQ  251 (329)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999984

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=7.1e-48  Score=349.03  Aligned_cols=186  Identities=38%  Similarity=0.727  Sum_probs=170.4

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 019510          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (340)
Q Consensus       130 ~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPI  209 (340)
                      |||++|+++|+++|++++|++++|+|+++||+++|||+++|||||++|++++++|++++|||||+||+++|+|+++|+||
T Consensus         2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi   81 (198)
T PF02096_consen    2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI   81 (198)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh-hccccCccccccCCCCchhHhhhhcCCCccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhH
Q 019510          210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME  288 (340)
Q Consensus       210 fi~ly~~Lr~m~~-~~l~t~gflW~~dLt~pd~i~~~~~g~~~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~  288 (340)
                      |+++|+++|++++ +++.++||+|++||+.+|+.                         ...||++||++++++++++++
T Consensus        82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~  136 (198)
T PF02096_consen   82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQE  136 (198)
T ss_pred             HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHHH
Confidence            9999999999986 67889999999999999831                         113899999999999999999


Q ss_pred             hcCC--CCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhccC
Q 019510          289 LMKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS  340 (340)
Q Consensus       289 i~~~--~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~sl~qs  340 (340)
                      ++.+  ...+++.++.+|.|++++|+++++++.++|+|+.+||++||+|+++|+
T Consensus       137 ~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~  190 (198)
T PF02096_consen  137 LSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQT  190 (198)
T ss_pred             HHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8643  222345566788899999999999999999999999999999999984

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.8e-47  Score=374.73  Aligned_cols=216  Identities=19%  Similarity=0.372  Sum_probs=177.4

Q ss_pred             CCc-chHHHHHHHHHHHHHHH--HhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh
Q 019510          100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG  176 (340)
Q Consensus       100 ~gg-w~~~i~~p~~~vL~~l~--~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~  176 (340)
                      ++| |++++++|+.++++++|  ..+. ...+++||+||+++|+++|++++|++++|+++++||+++|||++|||||||+
T Consensus       100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~  178 (357)
T PRK02201        100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD  178 (357)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            455 67899999999999996  2221 1234679999999999999999999999999999999999999999999997


Q ss_pred             C------HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCC
Q 019510          177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG  250 (340)
Q Consensus       177 d------~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~  250 (340)
                      |      ++++|+|+++||||||+||++||+|+|+|+|||+++|+++|.+.  ++....|+|+ ||+.+|...       
T Consensus       179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~--~l~~~~flgi-dLs~~~~~~-------  248 (357)
T PRK02201        179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLP--SIKVTTWLGI-DLSATSWQE-------  248 (357)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhH--hhccCCCccc-ccCCCChhh-------
Confidence            6      67899999999999999999999999999999999999999874  4778899999 999876210       


Q ss_pred             ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcC----C----CC-C--CCHHhHHHHHHHHHHHHHHHHHHh
Q 019510          251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P----PQ-T--DDPAQKNTLLVFKFLPLMIGYFSL  319 (340)
Q Consensus       251 ~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~----~----~~-~--~~~~q~~~k~m~~~mPlm~~~f~~  319 (340)
                         .+           .+..+|+++++++++++++++.+++    +    .. .  +.++.+.++.|+++||+++++++.
T Consensus       249 ---~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~  314 (357)
T PRK02201        249 ---IF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGV  314 (357)
T ss_pred             ---hc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence               00           1112577777888887777765532    1    01 1  122334577899999999999999


Q ss_pred             hhhhHHHHHHhhhhhhhhccC
Q 019510          320 SVPSGLSIYWLVSHINFTKSS  340 (340)
Q Consensus       320 ~~PagL~LYW~tsni~sl~qs  340 (340)
                      ++|+||.+||++||+|+++|+
T Consensus       315 ~~PaGL~LYW~~snl~tI~Qq  335 (357)
T PRK02201        315 IFAAGVQIYWIIGGIWTILQT  335 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999984

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.2e-46  Score=364.87  Aligned_cols=203  Identities=34%  Similarity=0.646  Sum_probs=181.0

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhh-hCH
Q 019510          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ  178 (340)
Q Consensus       100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk-~d~  178 (340)
                      +.||+.++..++...++++|.+.   |+  |||++|+++|++||++++|++.+|.++++||+++|||++||||||| +|+
T Consensus        84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~  158 (314)
T COG0706          84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK  158 (314)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence            68999989988999999986653   33  7999999999999999999999999999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccc-cccCCCCchhHhhhhcCCCccccccc
Q 019510          179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF  257 (340)
Q Consensus       179 ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gfl-W~~dLt~pd~i~~~~~g~~~~wl~p~  257 (340)
                      +++|+|+++|||||||||++||+|+++|+|||+++|+++++..  .+..++|+ |+.|++.+|                 
T Consensus       159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~--~l~~~~f~~w~~dl~~~d-----------------  219 (314)
T COG0706         159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTV--ELRGAPFLGWITDLSLPD-----------------  219 (314)
T ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhcc--cccccchhhhhhcccCCC-----------------
Confidence            9999999999999999999999999999999999999999875  46677777 999999876                 


Q ss_pred             cCCCCCCCcchhhHHH--HHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhh
Q 019510          258 VDGHPPLGWHDTAAYL--VLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHIN  335 (340)
Q Consensus       258 ~~~~~~~g~~~~~py~--ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~  335 (340)
                                   |++  ++|+++++++|.+++++..... ++..++++.|+++||+++.++++++|+||.+||++||+|
T Consensus       220 -------------p~~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~f  285 (314)
T COG0706         220 -------------PDYILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLF  285 (314)
T ss_pred             -------------CchhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH
Confidence                         344  5699999999999998765322 233346678899999999999999999999999999999


Q ss_pred             hhccC
Q 019510          336 FTKSS  340 (340)
Q Consensus       336 sl~qs  340 (340)
                      +++|.
T Consensus       286 si~Qq  290 (314)
T COG0706         286 SILQQ  290 (314)
T ss_pred             HHHHH
Confidence            99984

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=7.9e-46  Score=356.96  Aligned_cols=226  Identities=22%  Similarity=0.401  Sum_probs=170.5

Q ss_pred             hHHHHHHHHHHHHHHHHhccc-cC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHHH
Q 019510          104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER  180 (340)
Q Consensus       104 ~~~i~~p~~~vL~~l~~~l~~-~g--lp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~ek  180 (340)
                      ++++.+|+.++++++|+.++. +|  .+.+||+||+++|+++|++++|++++|+|+++||+++|||+++||||||+|+++
T Consensus         2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~   81 (304)
T PRK03449          2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK   81 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence            567889999999999987642 22  234799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------CccccccCCC
Q 019510          181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSLS  237 (340)
Q Consensus       181 ~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~--~l~t---------------------~gflW~~dLt  237 (340)
                      +++|+++|||||||||++||+|+|+|+|||+++|+++|++...  +..+                     ++|+|..   
T Consensus        82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~---  158 (304)
T PRK03449         82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR---  158 (304)
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh---
Confidence            9999999999999999999999999999999999999998541  2111                     1233221   


Q ss_pred             CchhHhhhhcCCCcc-ccc-cc--cCCCCCCC-cchhhHHHHHHHHHHHHHHHHhHhcCC-C---CCCCHHhH-HHHHHH
Q 019510          238 GPTTIAARQSGSGIS-WLL-PF--VDGHPPLG-WHDTAAYLVLPVLLVVSQYASMELMKP-P---QTDDPAQK-NTLLVF  307 (340)
Q Consensus       238 ~pd~i~~~~~g~~~~-wl~-p~--~~~~~~~g-~~~~~py~ILPIL~~~s~~ls~~i~~~-~---~~~~~~q~-~~k~m~  307 (340)
                              ..|.+++ |.- +.  .+..-..+ ++....++++|+++++++|++++++.. .   +.+++.+. ++|.|+
T Consensus       159 --------~~g~pL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k~M~  230 (304)
T PRK03449        159 --------LFGAPLSAYITMPRSGLDAFVDFTRTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNKLAL  230 (304)
T ss_pred             --------hcCCChHhhhcccchhhchhcccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHHHHH
Confidence                    0111111 110 00  00000000 111123567899999999999887431 1   11233333 457889


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHhhhhhhhhccC
Q 019510          308 KFLPLMIGYFSLSVPSGLSIYWLVSHINFTKSS  340 (340)
Q Consensus       308 ~~mPlm~~~f~~~~PagL~LYW~tsni~sl~qs  340 (340)
                      ++||+|+++++.++|+|+.+||++||+|+++|.
T Consensus       231 ~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq  263 (304)
T PRK03449        231 WVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQ  263 (304)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999983

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=2e-42  Score=345.32  Aligned_cols=236  Identities=23%  Similarity=0.360  Sum_probs=171.9

Q ss_pred             hHHHHHHHHHHHHHHHHhcc-ccCC--CcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhC---
Q 019510          104 FGFISEAMEFVLKILKDGID-AVHV--PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN---  177 (340)
Q Consensus       104 ~~~i~~p~~~vL~~l~~~l~-~~gl--p~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d---  177 (340)
                      +++|++|+.++++++|..++ .+|.  +++||++|+++|++||++++|++++|+|+++||+++||++++||+|||++   
T Consensus         2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~   81 (429)
T PRK00247          2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE   81 (429)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence            46789999999999999876 4564  34599999999999999999999999999999999999999999999974   


Q ss_pred             --HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCchhHh---hhhcCCC
Q 019510          178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIA---ARQSGSG  250 (340)
Q Consensus       178 --~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~--~~l~t~gflW~~dLt~pd~i~---~~~~g~~  250 (340)
                        ++++++|+++|||||||||++||+|+|+|+|||+++|++|++|+.  +|+.+..+.|+--|+..|.-.   +.-+|.+
T Consensus        82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp  161 (429)
T PRK00247         82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP  161 (429)
T ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence              356889999999999999999999999999999999999999975  455544444555555444211   1122322


Q ss_pred             ccccccccCCCC--CCCcc-hhhHHHHHHHHH--HHHHHHHhHhcCC-----CCCCCH----HhHHHHHHHHHHHHHHHH
Q 019510          251 ISWLLPFVDGHP--PLGWH-DTAAYLVLPVLL--VVSQYASMELMKP-----PQTDDP----AQKNTLLVFKFLPLMIGY  316 (340)
Q Consensus       251 ~~wl~p~~~~~~--~~g~~-~~~py~ILPIL~--~~s~~ls~~i~~~-----~~~~~~----~q~~~k~m~~~mPlm~~~  316 (340)
                      ++-.+ .+..+.  ..|.. ....+++||+++  ++.+++++.++..     ...+++    +++.|+.|++++|+|+++
T Consensus       162 L~~~~-sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~  240 (429)
T PRK00247        162 LPAYV-SMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS  240 (429)
T ss_pred             ccccc-ccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence            22110 000000  01111 112467888544  4445566655321     111223    344566777899999998


Q ss_pred             HHhh--hhhHHHHHHhhhhhhhhccC
Q 019510          317 FSLS--VPSGLSIYWLVSHINFTKSS  340 (340)
Q Consensus       317 f~~~--~PagL~LYW~tsni~sl~qs  340 (340)
                      ++++  +|+||.|||++||+|+++|+
T Consensus       241 ~g~~~~~PaallLYWv~snlwtl~Qq  266 (429)
T PRK00247        241 LGLTGPFPTAIALYWVANNLWTLIQN  266 (429)
T ss_pred             HHHhccchHHHHHHHHHhhHHHHHHH
Confidence            8876  79999999999999999984

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=2.9e-37  Score=297.26  Aligned_cols=113  Identities=33%  Similarity=0.604  Sum_probs=106.2

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHH----HHHHHhh
Q 019510          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA  175 (340)
Q Consensus       100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~----~Iq~kyk  175 (340)
                      |.||..+..+++..+++++|..+     + |||+||+++|++||++++|++++|+|+++||+.+||||+    +||||||
T Consensus         2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK   75 (375)
T PRK02654          2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK   75 (375)
T ss_pred             CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence            57887777789999999999754     2 799999999999999999999999999999999999985    7999999


Q ss_pred             hCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 019510          176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN  219 (340)
Q Consensus       176 ~d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~  219 (340)
                      +|++++|+|+++|||||| ||++||+|+|+|+|||+++|+++|.
T Consensus        76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~  118 (375)
T PRK02654         76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRG  118 (375)
T ss_pred             CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999 9999999999999999999999997

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.2e-23  Score=206.56  Aligned_cols=194  Identities=20%  Similarity=0.352  Sum_probs=165.7

Q ss_pred             cCCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh--
Q 019510           99 KNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG--  176 (340)
Q Consensus        99 ~~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~--  176 (340)
                      ...+|..  +..+.+.++.+|+..   |+  +||++|+..|+.+|..++|+.++++|+..|++++.||+.++.++.+.  
T Consensus        77 ~~~~~~p--~~~lq~~l~~~h~~~---g~--pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~  149 (372)
T KOG1239|consen   77 ALSSWRP--VATLQNELERLHVYS---GL--PWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAA  149 (372)
T ss_pred             HhcccCc--hhHHHHHHHHHHHHh---CC--cchHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhh
Confidence            3344443  556888999999875   44  58999999999999999999999999999999999999999998875  


Q ss_pred             -C---HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hccccCccccccCCCCchhHhhhhcCCC
Q 019510          177 -N---QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSG  250 (340)
Q Consensus       177 -d---~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~--~~l~t~gflW~~dLt~pd~i~~~~~g~~  250 (340)
                       |   ....|+|+++++|+||++| +....+++|.|+|++.|.+||.|+.  +++.++|++||+||+.+|          
T Consensus       150 ~~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d----------  218 (372)
T KOG1239|consen  150 QDNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD----------  218 (372)
T ss_pred             ccccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC----------
Confidence             1   2356778999999999999 9888888999999999999999985  577788999999999886          


Q ss_pred             ccccccccCCCCCCCcchhhHHHHHHHHHHHHHHHHhHhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 019510          251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW  329 (340)
Q Consensus       251 ~~wl~p~~~~~~~~g~~~~~py~ILPIL~~~s~~ls~~i~~~~~~-~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW  329 (340)
                                          |++++|+++.+++...+++..+.+. .+.....++.+++++|+.+..++.++|+++++||
T Consensus       219 --------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~yw  278 (372)
T KOG1239|consen  219 --------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYW  278 (372)
T ss_pred             --------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhh
Confidence                                7899999999999999988654322 1233446778899999999999999999999999


Q ss_pred             h
Q 019510          330 L  330 (340)
Q Consensus       330 ~  330 (340)
                      +
T Consensus       279 l  279 (372)
T KOG1239|consen  279 L  279 (372)
T ss_pred             h
Confidence            8

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.2e-09  Score=108.98  Aligned_cols=232  Identities=24%  Similarity=0.265  Sum_probs=197.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhhCHH
Q 019510          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (340)
Q Consensus       100 ~ggw~~~i~~p~~~vL~~l~~~l~~~glp~~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~d~e  179 (340)
                      .+.|+..+....+..+..++.....++.+..++.++...|+++++...|+...+..+..-++..+|-...+...+.....
T Consensus         4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p   83 (372)
T KOG1239|consen    4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP   83 (372)
T ss_pred             cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence            67899888888888888888887778888889999999999999999999998999999999999999999999888665


Q ss_pred             --HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCccccccCCCCchhHhhhhcCCCccccccc
Q 019510          180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF  257 (340)
Q Consensus       180 --k~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~m~~~~l~t~gflW~~dLt~pd~i~~~~~g~~~~wl~p~  257 (340)
                        .+|.|+.++|+-.|++.+++|....+-++..+..|++.++ .++...+.++.|++.+..+...++.+.+..+.|..+.
T Consensus        84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~  162 (372)
T KOG1239|consen   84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ  162 (372)
T ss_pred             hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence              8999999999999999999999999999999999999997 5566678899999998887777777777788898888


Q ss_pred             cCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhh
Q 019510          258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWLVSHINF  336 (340)
Q Consensus       258 ~~~~~~~g~~-~~~py~ILPIL~~~s~~ls~~i~~~~~~~~~~q~~~k~m~~~mPlm~~~f~~~~PagL~LYW~tsni~s  336 (340)
                      .+.+.+.||. +...+.+++..+.++.|+.++.|..+..+.+.+     ....+|-+..+.....+.++..||+++++..
T Consensus       163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~  237 (372)
T KOG1239|consen  163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL  237 (372)
T ss_pred             HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence            8888888988 888889999999999999999987433222221     4455677777788888999999999887754


Q ss_pred             h
Q 019510          337 T  337 (340)
Q Consensus       337 l  337 (340)
                      -
T Consensus       238 ~  238 (372)
T KOG1239|consen  238 G  238 (372)
T ss_pred             H
Confidence            3

>COG1422 Predicted membrane protein [Function unknown]

Probab=96.87  E-value=0.0056  Score=56.35  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=52.8

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhccHHHHHHHHHhhh-----CH---HHHHHHHHHHHHHcCCCCCCCch
Q 019510          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLAGCL  201 (340)
Q Consensus       130 ~wg~aIil~TliVRlil~PL~ikq~kss~km~~lqPel~~Iq~kyk~-----d~---ek~q~E~~~LyKk~gvnPl~gcL  201 (340)
                      +.-++|.+..+++=+.+ -+.-+-.....||+++|.+++|.||++++     |.   ||+|+|+++...+..-=.--.+-
T Consensus        45 ~p~lvilV~avi~gl~~-~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfk  123 (201)
T COG1422          45 PPHLVILVAAVITGLYI-TILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFK  123 (201)
T ss_pred             ccHHHHHHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44566666666655432 12223334578999999999999998864     43   35555544443322110101234


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 019510          202 PTLATIPVWIGLYQALSNVA  221 (340)
Q Consensus       202 p~LiQiPIfi~ly~~Lr~m~  221 (340)
                      |++.++++.|-.|.=++...
T Consensus       124 PM~~~~v~tI~~F~Wl~~~~  143 (201)
T COG1422         124 PMLYISVLTIPFFAWLRWFV  143 (201)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            78777777777776666543

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=88.24  E-value=1.8  Score=38.25  Aligned_cols=66  Identities=9%  Similarity=0.107  Sum_probs=28.7

Q ss_pred             HHHHHHHHhccHHHHHHHHHhhh-CHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 019510          154 VESTLAMQNLQPKIKAIQQRYAG-NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN  219 (340)
Q Consensus       154 ~kss~km~~lqPel~~Iq~kyk~-d~ek~q~E~~~LyKk~gvnPl~gcLp~LiQiPIfi~ly~~Lr~  219 (340)
                      -+...++++++-+.++++++... ..++.+++.+++.++..--....+-|+++.+-+++.++..++.
T Consensus        43 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~mK~~~~~~v~~i~i~~wi~~  109 (168)
T PF01956_consen   43 DKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEMMMMMMKPMFVTMVPQIPIFYWINY  109 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            34455556666666666664332 2344444444443332111111223444444444444444443

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00