Citrus Sinensis ID: 019511

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDHTHSFFE
Secondary Structure (PSIPRED)
cccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEcccccccccEEEEEEccccccEEEEEccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccEEEEcccccccccccccccccEEEEcccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHccccccccEHHHHHHHHHcccEEEEEEcccccEEEEccccccccccEEEEEEccccccccccccccccHHHEEcccccccc
Coil and Loop (DISEMBL)
mitfeqdsDVLQWGlqlfesdpylncgytntvtpddesyyygqhfkedhyetescdveSDELIAHALQEELSQLAVseasespheteenlqgpvfqhgwvnhsvggyysgqetgqeeaddtqpsslcssheevsycgeewsypqeltdeyaldgevgkrlnqmvpvphvpringeipsideaTLDHQRLLERLQVYDLVEhkvqgdgncqfrALSDQIYRTAEHHEFVRQQIVAQLksnpdiyegyvpmaYGDYLEKmsesgewgdhVTLQAAADLYGVKIFVITSfkdtcyieilPNVERSIRVIYLSFWAEVHynsiypaggkypifvfmdhthsffe
Flexible Loop (DISEMBL)
mitfeqdsdvLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDHTHSFFE
Low Complexity Region (SEG)
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDHTHSFFE
Disordered region (IsUnstruct)
********DVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDV****LIA*****************************VFQHGWVNHSVGGYY************************VSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDHTH****
Disordered Region (DISOPRED)
***FEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQE********************************************************************************************************************HQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEIL*N*ERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDH******
Disordered Region (DISEMBL)
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQL***************LQGPVFQHGWVNHSVGGYYSGQ**************************EEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDHTHSFFE
Disordered Region (DISPRO)
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASE*P****ENLQGPVFQHGWVNHSV******************************************TDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDHT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDHTHSFFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q54P70	766	OTU domain-containing pro	yes	no	0.520	0.231	0.373	6e-23
Q96G74	571	OTU domain-containing pro	yes	no	0.420	0.250	0.282	4e-10
Q3U2S4	566	OTU domain-containing pro	yes	no	0.420	0.252	0.278	4e-10
Q2YDU3	566	OTU domain-containing pro	no	no	0.420	0.252	0.278	4e-10
Q08BW0	560	OTU domain-containing pro	yes	no	0.402	0.244	0.302	4e-10
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.405	0.269	0.280	6e-10
Q6GL44	518	OTU domain-containing pro	yes	no	0.338	0.222	0.3	2e-09
Q640H3	518	OTU domain-containing pro	N/A	no	0.338	0.222	0.3	2e-09
Q9D8C3	1166	UDP-N-acetylglucosamine t	no	no	0.397	0.115	0.279	1e-08
P22856	867	Putative ubiquitin thioes	N/A	no	0.423	0.166	0.265	7e-08

>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2

 Score =  108 bits (270), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 103/190 (54%), Gaps = 13/190 (6%)

Query: 145 ELTDEYALDGEVGKRLNQMVPV--PHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHK 202
           E+     L+G V K +N    +   +V      +P   E  +  QRL ERL++Y L   K
Sbjct: 575 EIKTNLLLEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQRLNERLELYMLKNSK 634

Query: 203 -VQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPD--------IYEGYVPMAYGD 253
            + GDGNCQ  ALSDQ+Y    H + VR+ IV  L+ N D        I +      + D
Sbjct: 635 EIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATICQFVNTNNWDD 694

Query: 254 YLEKMSESGEWGDHVTLQAAADLYGVKIFVITSF--KDTCYIEILPNVERSIRVIYLSFW 311
           Y   MS++G WGDH+TL AAA+ +G KI +I+S   +   +IEI+P+   + +V+ LS +
Sbjct: 695 YCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEIIPSKILNDKVLLLSHY 754

Query: 312 AEVHYNSIYP 321
           AE HY S+ P
Sbjct: 755 AEFHYGSLCP 764

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 13/156 (8%)

Query: 174 GEIPSIDEATLDHQRLLERLQVYD---LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQ 230
             I ++D AT++ Q       + D    +  +++ DG C FRA++DQ+Y   + HE VR+
Sbjct: 186 ARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRK 245

Query: 231 QIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT 290
             +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   + V      T
Sbjct: 246 HCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGT 305

Query: 291 CYIE-------ILPNVERSIRVIYLSFWAEVHYNSI 319
             +E       I  N +  IRV   S+   +HYNS+
Sbjct: 306 SAVEPINTFHGIHQNEDEPIRV---SYHRNIHYNSV 338

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 174 GEIPSIDEATLDHQRLLERLQVYD---LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQ 230
             I ++D AT++ Q       + D    +  +++ DG C FRA++DQ+Y   + HE VR+
Sbjct: 186 ARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRK 245

Query: 231 QIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG--VKIFVITSFK 288
             +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   V+++  ++  
Sbjct: 246 HCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP 305

Query: 289 DTCYIEILPNVERSIRVIYLSFWAEVHYNSI 319
              +  I  N +  IRV   S+   +HYNS+
Sbjct: 306 INTFHGIHQNEDEPIRV---SYHRNIHYNSV 333

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 174 GEIPSIDEATLDHQRLLERLQVYD---LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQ 230
             I ++D AT++ Q       + D    +  +++ DG C FRA++DQ+Y   + HE VR+
Sbjct: 186 ARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRK 245

Query: 231 QIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG--VKIFVITSFK 288
             +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   V+++  ++  
Sbjct: 246 HCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP 305

Query: 289 DTCYIEILPNVERSIRVIYLSFWAEVHYNSI 319
              +  I  N +  IRV   S+   +HYNS+
Sbjct: 306 INTFHGIHQNEDEPIRV---SYHRNIHYNSV 333

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 12/149 (8%)

Query: 178 SIDEATLDHQ-----RLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQI 232
           S D AT++ Q     + L+  + +  V  K++ DG C FRA++DQ+Y   + HE VR+  
Sbjct: 188 SEDPATVEQQEHWFEKALQEKKGF--VIKKMKEDGACLFRAVADQVYGDQDMHEVVRKHC 245

Query: 233 VAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKD--T 290
           +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   + V  S  +   
Sbjct: 246 MDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQSGTEPIN 305

Query: 291 CYIEILPNVERSIRVIYLSFWAEVHYNSI 319
            +  I  N +  IRV   S+   +HYNS+
Sbjct: 306 TFHGIHQNNDEPIRV---SYHRNIHYNSV 331

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 8/146 (5%)

Query: 179 IDEATLDHQRLLERLQVYD---LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQ 235
           +D  T + Q L     + D    +  +++ DG C FRA++DQ+Y   + HE VR+  +  
Sbjct: 144 LDPDTAEQQELCFEKTLSDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDY 203

Query: 236 LKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG--VKIFVITSFKDTCYI 293
           L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   V+++   +     + 
Sbjct: 204 LMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTFH 263

Query: 294 EILPNVERSIRVIYLSFWAEVHYNSI 319
            I  N +  IRV   S+   +HYNS+
Sbjct: 264 GIQKNEDEPIRV---SYHRNIHYNSV 286

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 202 KVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSES 261
           +++ DG C FRA++DQ+Y   + HE VR+  +  L  N D +  YV   +  Y+ +  ++
Sbjct: 175 QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 234

Query: 262 GEWGDHVTLQAAADLYG--VKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSI 319
              G+H+ +QA A++Y   V+++   +     +  I  N +  IRV   S+   +HYNS+
Sbjct: 235 NCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIRV---SYHRNIHYNSV 291

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 5/120 (4%)

Query: 202 KVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSES 261
           +++ DG C FRA++DQ+Y   + HE VR+  +  L  N D +  YV   +  Y+ +  ++
Sbjct: 175 QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 234

Query: 262 GEWGDHVTLQAAADLYG--VKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSI 319
              G+H+ +QA A++Y   V+++   +     +  I  N +  IRV   S+   +HYNS+
Sbjct: 235 NCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIRV---SYHRNIHYNSV 291

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9D8C3|ALG13_MOUSE UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 8/143 (5%)

Query: 178 SIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLK 237
           S++EA++D     E L    L    V  D +C FRA+S+Q++ +  HH  +R+  V+ +K
Sbjct: 210 SLNEASMD-----EYLGSLGLFRKVVAKDASCLFRAISEQLFHSQIHHLQIRRACVSYMK 264

Query: 238 SNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILP 297
            N   +E YV  ++  YLE++ +  E    + L+A + +Y  + F+I  +      ++  
Sbjct: 265 ENQQAFESYVEGSFEKYLERLGDPKESAGQLELKALSLIYN-RDFIIYRYPGKPPTQVTD 323

Query: 298 NVERSIRVIYLSFWAEVHYNSIY 320
           N       I L +    HY+S+Y
Sbjct: 324 NGFED--KIILCYSNNGHYDSVY 344

Isoform 2 may be involved in protein N-glycosylation, second step of the dolichol-linked oligosaccharide pathway (By. similarity).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 22/166 (13%)

Query: 189 LLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAE---HHEFVRQQIVAQLKSNPDIYEG 245
           +L R + Y ++   V+GDGNC FRA+   +         HE +R Q+V  L S+ +  E 
Sbjct: 599 ILARRRGYKVIP--VKGDGNCLFRAVGKSLRLNQNIKYSHEDLRAQVVTYLTSHKEFLEP 656

Query: 246 YV----------PMAYGD----YLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTC 291
           Y+          P  Y      Y++ +S+ G WGD + L+  +++  VK  ++    +T 
Sbjct: 657 YLEYVTESGDTTPQEYAKNVERYIKNISKPGTWGDFICLRVLSEILKVKFNLL--ILNTR 714

Query: 292 YIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMDHTHS 337
             +++ N +    +I L F  + HY ++ P   + PI V  + T +
Sbjct: 715 NFQVISNNDTFKPLIPLGFIDDYHYTALTPLYAE-PIAVLENETPT 759

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (By similarity). May be involved in TIV genomic DNA packaging in a manner related to the Gag polyproteins of the mammalian viruses.

Tipula (taxid: 41043)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
225435383	353	PREDICTED: uncharacterized protein LOC10	0.95	0.915	0.727	1e-134
297746292	354	unnamed protein product [Vitis vinifera]	0.95	0.912	0.727	1e-134
359481389	341	PREDICTED: OTU domain-containing protein	0.941	0.938	0.658	1e-115
297741626	338	unnamed protein product [Vitis vinifera]	0.929	0.934	0.663	1e-114
449517642	336	PREDICTED: uncharacterized LOC101218393	0.941	0.952	0.635	1e-111
449456030	336	PREDICTED: uncharacterized protein LOC10	0.941	0.952	0.635	1e-110
296085991	325	unnamed protein product [Vitis vinifera]	0.882	0.923	0.609	1e-106
224119436	338	predicted protein [Populus trichocarpa]	0.935	0.940	0.614	1e-104
255577110	284	cysteine-type peptidase, putative [Ricin	0.802	0.961	0.712	1e-103
255556956	341	cysteine-type peptidase, putative [Ricin	0.879	0.876	0.6	4e-99

>gi|225435383|ref|XP_002282609.1| PREDICTED: uncharacterized protein LOC100243216 [Vitis vinifera]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/323 (72%), Positives = 272/323 (84%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESD 60
           MIT+EQD DV++WGLQLF+ DP+ NCGY  T+  +D SYY G +FKEDHY+ E  +VE+D
Sbjct: 1   MITYEQDPDVVRWGLQLFDGDPFSNCGYGGTIVQNDVSYYDGPYFKEDHYDNECSNVEND 60

Query: 61  ELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADD 120
           E+IAHALQEELSQLAV EA+   HE  E+LQ  +F   W + S+G Y  G E+GQE+ DD
Sbjct: 61  EIIAHALQEELSQLAVDEAAGLSHEVVEDLQVSIFPEEWPDQSMGNYGFGHESGQEDTDD 120

Query: 121 TQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSID 180
              SS CSS +E SY GE+WSY  +LTDEYALD EVGK LNQMVPVPHVP+INGEIPS+D
Sbjct: 121 MGLSSSCSSPDEKSYNGEDWSYSLDLTDEYALDDEVGKILNQMVPVPHVPKINGEIPSLD 180

Query: 181 EATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNP 240
           EATLDHQRLL+RLQ++DLVE KVQGDGNCQFR+LSDQ+Y T EHH+F+RQQ+V QLKS P
Sbjct: 181 EATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCTPEHHQFIRQQVVNQLKSYP 240

Query: 241 DIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVE 300
           +IYEGYVPMAYGDYLEKMS++GEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNV+
Sbjct: 241 EIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVQ 300

Query: 301 RSIRVIYLSFWAEVHYNSIYPAG 323
           RS RV+ LSFWAEVHYNSIY  G
Sbjct: 301 RSERVMLLSFWAEVHYNSIYFKG 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746292|emb|CBI16348.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/323 (72%), Positives = 272/323 (84%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESD 60
           MIT+EQD DV++WGLQLF+ DP+ NCGY  T+  +D SYY G +FKEDHY+ E  +VE+D
Sbjct: 1   MITYEQDPDVVRWGLQLFDGDPFSNCGYGGTIVQNDVSYYDGPYFKEDHYDNECSNVEND 60

Query: 61  ELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADD 120
           E+IAHALQEELSQLAV EA+   HE  E+LQ  +F   W + S+G Y  G E+GQE+ DD
Sbjct: 61  EIIAHALQEELSQLAVDEAAGLSHEVVEDLQVSIFPEEWPDQSMGNYGFGHESGQEDTDD 120

Query: 121 TQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSID 180
              SS CSS +E SY GE+WSY  +LTDEYALD EVGK LNQMVPVPHVP+INGEIPS+D
Sbjct: 121 MGLSSSCSSPDEKSYNGEDWSYSLDLTDEYALDDEVGKILNQMVPVPHVPKINGEIPSLD 180

Query: 181 EATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNP 240
           EATLDHQRLL+RLQ++DLVE KVQGDGNCQFR+LSDQ+Y T EHH+F+RQQ+V QLKS P
Sbjct: 181 EATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCTPEHHQFIRQQVVNQLKSYP 240

Query: 241 DIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVE 300
           +IYEGYVPMAYGDYLEKMS++GEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNV+
Sbjct: 241 EIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVQ 300

Query: 301 RSIRVIYLSFWAEVHYNSIYPAG 323
           RS RV+ LSFWAEVHYNSIY  G
Sbjct: 301 RSERVMLLSFWAEVHYNSIYFKG 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481389|ref|XP_002276656.2| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Vitis vinifera]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/325 (65%), Positives = 248/325 (76%), Gaps = 5/325 (1%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESD 60
           M+  +QD DV+QWGL LF  DP  + GY   +   D + Y GQ+F+ DHYETE C VE+D
Sbjct: 1   MVIHDQDLDVVQWGLSLFGGDP--DSGYCCNLAEHDTNIY-GQYFR-DHYETE-CSVEND 55

Query: 61  ELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADD 120
           E IAH LQEE SQLA++EASES    EE++Q P+F   W+    G Y S  E  +EE D 
Sbjct: 56  ERIAHVLQEEFSQLAITEASESSRAGEEHMQAPIFPQDWLPLPAGNYRSAHEDDREEVDH 115

Query: 121 TQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSID 180
             PS  CSS EE S  GEE+SY  E+TDE ALDGEVGKRLNQ++P  HVPRINGEIPS+D
Sbjct: 116 IVPSGSCSSPEERSCDGEEYSYSLEITDESALDGEVGKRLNQIIPAAHVPRINGEIPSVD 175

Query: 181 EATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNP 240
           EAT DHQRLL+RLQ + LVE KV+GDGNCQFRALSDQ YRT EHH+FVR+Q+V QLKS+P
Sbjct: 176 EATSDHQRLLDRLQHFGLVEFKVEGDGNCQFRALSDQFYRTPEHHKFVRRQVVNQLKSHP 235

Query: 241 DIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVE 300
           DIYEGYVPMAY DYL+KMS SGEWGDHVTLQAAAD YGVKI + TS+KD+  IEILP   
Sbjct: 236 DIYEGYVPMAYDDYLKKMSRSGEWGDHVTLQAAADSYGVKIIIFTSYKDSSNIEILPKAP 295

Query: 301 RSIRVIYLSFWAEVHYNSIYPAGGK 325
           +S RVIYLSFWAEVHYNSIYP  G+
Sbjct: 296 KSNRVIYLSFWAEVHYNSIYPQEGR 320

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741626|emb|CBI32758.3| unnamed protein product [Vitis vinifera]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/321 (66%), Positives = 246/321 (76%), Gaps = 5/321 (1%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESD 60
           M+  +QD DV+QWGL LF  DP  + GY   +   D + Y GQ+F+ DHYETE C VE+D
Sbjct: 1   MVIHDQDLDVVQWGLSLFGGDP--DSGYCCNLAEHDTNIY-GQYFR-DHYETE-CSVEND 55

Query: 61  ELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADD 120
           E IAH LQEE SQLA++EASES    EE++Q P+F   W+    G Y S  E  +EE D 
Sbjct: 56  ERIAHVLQEEFSQLAITEASESSRAGEEHMQAPIFPQDWLPLPAGNYRSAHEDDREEVDH 115

Query: 121 TQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSID 180
             PS  CSS EE S  GEE+SY  E+TDE ALDGEVGKRLNQ++P  HVPRINGEIPS+D
Sbjct: 116 IVPSGSCSSPEERSCDGEEYSYSLEITDESALDGEVGKRLNQIIPAAHVPRINGEIPSVD 175

Query: 181 EATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNP 240
           EAT DHQRLL+RLQ + LVE KV+GDGNCQFRALSDQ YRT EHH+FVR+Q+V QLKS+P
Sbjct: 176 EATSDHQRLLDRLQHFGLVEFKVEGDGNCQFRALSDQFYRTPEHHKFVRRQVVNQLKSHP 235

Query: 241 DIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVE 300
           DIYEGYVPMAY DYL+KMS SGEWGDHVTLQAAAD YGVKI + TS+KD+  IEILP   
Sbjct: 236 DIYEGYVPMAYDDYLKKMSRSGEWGDHVTLQAAADSYGVKIIIFTSYKDSSNIEILPKAP 295

Query: 301 RSIRVIYLSFWAEVHYNSIYP 321
           +S RVIYLSFWAEVHYNSIYP
Sbjct: 296 KSNRVIYLSFWAEVHYNSIYP 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517642|ref|XP_004165854.1| PREDICTED: uncharacterized LOC101218393 [Cucumis sativus]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/329 (63%), Positives = 251/329 (76%), Gaps = 9/329 (2%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESD 60
           MIT EQD DV++WGL+LF+ +P+ N GY   +  D+  YY GQ    D+Y+ ++C +E++
Sbjct: 1   MITHEQDPDVVRWGLELFDGNPFSNYGYCGNIH-DEIQYYQGQCLDVDNYD-KACTIENN 58

Query: 61  ELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADD 120
           ELIA  LQE LSQLAV+E       TE N+Q   +   W + S+    S      EE D 
Sbjct: 59  ELIAQTLQE-LSQLAVAEPVSFDQGTE-NVQLSTYPQEWFSLSINACGSEHNNDLEEED- 115

Query: 121 TQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSID 180
               S C+  +  SY G++WSY  ELTDEY LDGE+GKRLNQM+ +PH+PRINGEIPS+D
Sbjct: 116 ---YSSCTMPDGTSYSGDDWSYSLELTDEYTLDGEMGKRLNQMISIPHIPRINGEIPSVD 172

Query: 181 EATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNP 240
           E  LDHQRLL+RLQ+Y L+E KVQGDGNCQFRALSDQIYRT+EHH+FVR+Q+V QLKS P
Sbjct: 173 EEALDHQRLLDRLQLYYLIELKVQGDGNCQFRALSDQIYRTSEHHKFVREQVVNQLKSYP 232

Query: 241 DIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVE 300
           +IYEGYVPMAY DYLEK+S+SGEWGDHVTLQAAAD YGVKIF+ITSFKDTCYIEILPN+E
Sbjct: 233 EIYEGYVPMAYTDYLEKISKSGEWGDHVTLQAAADTYGVKIFMITSFKDTCYIEILPNIE 292

Query: 301 RSIRVIYLSFWAEVHYNSIYPAGGKYPIF 329
           RS RVI LSFWAEVHYNSIYP  G  P+F
Sbjct: 293 RSKRVICLSFWAEVHYNSIYPE-GDVPMF 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456030|ref|XP_004145753.1| PREDICTED: uncharacterized protein LOC101218393 [Cucumis sativus]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/329 (63%), Positives = 251/329 (76%), Gaps = 9/329 (2%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESD 60
           MIT EQD DV++WGL+LF+ +P+ + GY   +  D+  YY GQ    D+Y+ ++C +E++
Sbjct: 1   MITHEQDPDVVRWGLELFDGNPFSDYGYCGNIH-DEIQYYQGQCLDVDNYD-KACTIENN 58

Query: 61  ELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADD 120
           ELIA  LQE LSQLAV+E       TE NLQ   +   W + S+    S      EE D 
Sbjct: 59  ELIAQTLQE-LSQLAVAEPVSFDQGTE-NLQLSTYPQEWFSLSINACGSEHNNDLEEED- 115

Query: 121 TQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSID 180
               S C+  +  SY G++WSY  ELTDEY LDGE+GKRLNQM+ +PH+PRINGEIPS+D
Sbjct: 116 ---YSSCTMPDGTSYSGDDWSYSLELTDEYTLDGEMGKRLNQMISIPHIPRINGEIPSVD 172

Query: 181 EATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNP 240
           E  LDHQRLL+RLQ+Y L+E KVQGDGNCQFRALSDQIYRT+EHH+FVR+Q+V QLKS P
Sbjct: 173 EEALDHQRLLDRLQLYYLIELKVQGDGNCQFRALSDQIYRTSEHHKFVREQVVNQLKSYP 232

Query: 241 DIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVE 300
           +IYEGYVPMAY DYLEK+S+SGEWGDHVTLQAAAD YGVKIF+ITSFKDTCYIEILPN+E
Sbjct: 233 EIYEGYVPMAYTDYLEKISKSGEWGDHVTLQAAADTYGVKIFMITSFKDTCYIEILPNIE 292

Query: 301 RSIRVIYLSFWAEVHYNSIYPAGGKYPIF 329
           RS RVI LSFWAEVHYNSIYP  G  P+F
Sbjct: 293 RSKRVICLSFWAEVHYNSIYPE-GDVPMF 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085991|emb|CBI31432.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/328 (60%), Positives = 238/328 (72%), Gaps = 28/328 (8%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESD 60
           MI +EQD DV++WGL L +     N GY                     YE +   VE+D
Sbjct: 1   MIGYEQDPDVVRWGLHLLDICSLSNVGY---------------------YEEQHNSVEND 39

Query: 61  ELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQ----- 115
           E+IAHALQEELS +A +EAS   +  +++LQ  +    W+  S     SG +  Q     
Sbjct: 40  EIIAHALQEELSHIAAAEASGLSNVGKDHLQASILAQDWLGPSKRHPGSGHDERQDDSSR 99

Query: 116 --EEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRIN 173
             EEAD    SS CSS E     GE++SY  E+TDE  LDGEVGKRLNQMVPVPHVP++N
Sbjct: 100 KKEEADGIGVSSSCSSPEGKPLSGEDFSYSLEMTDESVLDGEVGKRLNQMVPVPHVPKVN 159

Query: 174 GEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIV 233
           GEIPS+DEAT DH+RLL RLQ+YDL E KVQGDGNCQFRALSDQ YRT +HH+FVR+QIV
Sbjct: 160 GEIPSVDEATSDHERLLNRLQLYDLFELKVQGDGNCQFRALSDQFYRTPDHHKFVREQIV 219

Query: 234 AQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYI 293
            QLK+NP IYEGYVPMAYG+YL+KMS++GEWGDHVTLQAAAD YG+KIFV+TSFKDTCYI
Sbjct: 220 NQLKANPRIYEGYVPMAYGEYLKKMSKNGEWGDHVTLQAAADTYGLKIFVLTSFKDTCYI 279

Query: 294 EILPNVERSIRVIYLSFWAEVHYNSIYP 321
           EILPN+++S RVI+LSFWAEVHYNSIYP
Sbjct: 280 EILPNIQKSNRVIFLSFWAEVHYNSIYP 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119436|ref|XP_002331229.1| predicted protein [Populus trichocarpa] gi|222873415|gb|EEF10546.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/324 (61%), Positives = 233/324 (71%), Gaps = 6/324 (1%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCD-VES 59
           M+ +EQDSDV+QWGL+L + DP    GY        +  Y+G H+  DHY+   C  VES
Sbjct: 1   MVIYEQDSDVIQWGLRLLDGDPPYYSGYYGDAIIQSDDGYHG-HYVRDHYDISDCSHVES 59

Query: 60  DELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEAD 119
           DE+IA  LQEE SQLAV+EA+E  H  EE+L   V +H W       Y S  E   EE+D
Sbjct: 60  DEMIARTLQEEFSQLAVTEATEYSHGGEEHLHTSVDEHPWQCTPTRNYCSDNECSHEESD 119

Query: 120 DTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSI 179
           D  PSS CSS       GEE+SY  E  D+Y LD EVGKRLNQ++P+ HVPRINGEIPSI
Sbjct: 120 DAVPSSSCSSPAN----GEEYSYSPESNDDYELDDEVGKRLNQLIPIRHVPRINGEIPSI 175

Query: 180 DEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSN 239
           DEAT DH+RLL RLQ++   E KVQGDGNCQFRALSDQIY T + H+ VR+Q+V QL S+
Sbjct: 176 DEATSDHERLLNRLQLFGFDELKVQGDGNCQFRALSDQIYNTPDRHKTVRRQVVYQLNSH 235

Query: 240 PDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNV 299
           P+IYEGYVPM YG+YL KMS SGEWGDHVTLQAAAD YGVKI V+TSFKDTCYIEILP  
Sbjct: 236 PEIYEGYVPMEYGEYLRKMSRSGEWGDHVTLQAAADSYGVKILVMTSFKDTCYIEILPVS 295

Query: 300 ERSIRVIYLSFWAEVHYNSIYPAG 323
           ++   VI+LSFWAEVHYNSIY  G
Sbjct: 296 QKPKGVIFLSFWAEVHYNSIYFQG 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577110|ref|XP_002529439.1| cysteine-type peptidase, putative [Ricinus communis] gi|223531116|gb|EEF32965.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/278 (71%), Positives = 226/278 (81%), Gaps = 5/278 (1%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNT-VTPDDESYYYGQHFKE-DHYETESCDVE 58
           MIT EQD DV+QWGLQLFES+PY N  Y +T +T DD  YY GQHFKE D+Y+TE C+VE
Sbjct: 2   MITHEQDPDVVQWGLQLFESNPYSNYMYCDTTITQDDVDYYVGQHFKEEDYYDTECCNVE 61

Query: 59  SDELIAHALQEELSQLAVSEASESPHET-EENLQGPVFQHGWVNHSVGGYYSGQETGQEE 117
            DELIAH+LQEELSQL+V+E+ +SP E   +NLQ   FQ  W   S+  Y SGQE GQEE
Sbjct: 62  HDELIAHSLQEELSQLSVAESPKSPDEGGNDNLQISSFQSDWHGQSMENYASGQEGGQEE 121

Query: 118 ADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIP 177
           ADD    S CSS +E SY  E+WSY  EL +EYA+DGEVGK LN+MVP+PHVP+INGEIP
Sbjct: 122 ADDM--GSSCSSPQENSYPEEDWSYLLELAEEYAVDGEVGKWLNEMVPIPHVPKINGEIP 179

Query: 178 SIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLK 237
           S+DEATLDHQRLL+RLQVYDL+EHKVQGDGNCQFRALSDQ Y T EHHEFVR+Q+V QLK
Sbjct: 180 SVDEATLDHQRLLDRLQVYDLIEHKVQGDGNCQFRALSDQFYLTPEHHEFVREQVVNQLK 239

Query: 238 SNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAAD 275
           S P+ YE YVPMAY DYLEKMS+SGEWGDHVTLQAAAD
Sbjct: 240 SYPETYESYVPMAYADYLEKMSKSGEWGDHVTLQAAAD 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556956|ref|XP_002519511.1| cysteine-type peptidase, putative [Ricinus communis] gi|223541374|gb|EEF42925.1| cysteine-type peptidase, putative [Ricinus communis]

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 189/315 (60%), Positives = 232/315 (73%), Gaps = 16/315 (5%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCD-VES 59
           M  +EQDSDV+QWGL+L + DP    GY   V  +++SY+ GQ+ + DHY+   C  V+S
Sbjct: 1   MAMYEQDSDVVQWGLRLLDGDPPFYSGYYCGVVQNEDSYH-GQYIR-DHYDISDCTHVDS 58

Query: 60  DELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEAD 119
           DE+IA  LQEE SQLAV+EAS      E+N+Q  +  H W  H         E   E++D
Sbjct: 59  DEIIARTLQEEFSQLAVAEASRYSPAREDNMQESIQSHDWHYH---------EHSHEDSD 109

Query: 120 DTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSI 179
           D  PSS CSS        +E+SY  E  DEYALD EVG+RLNQMVP+PHVPRINGEIPSI
Sbjct: 110 DMVPSSSCSSPGN----EDEYSYSPEFADEYALDDEVGRRLNQMVPIPHVPRINGEIPSI 165

Query: 180 DEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSN 239
           DEA+ DH+RLL RLQ++D  E KVQGDGNCQFRALSDQ+Y T + H+ VR+Q+V QL+S+
Sbjct: 166 DEASSDHERLLNRLQLFDFFEVKVQGDGNCQFRALSDQLYSTPDRHKVVRRQVVNQLRSH 225

Query: 240 PDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNV 299
           P+IYEGYVPM YGDYL+KMS+SGEWGDHVTLQAAAD YGVKI V+TSFKDTCYIEILP  
Sbjct: 226 PEIYEGYVPMEYGDYLKKMSKSGEWGDHVTLQAAADTYGVKILVMTSFKDTCYIEILPIN 285

Query: 300 ERSIRVIYLSFWAEV 314
           +++   I+LSFWAE+
Sbjct: 286 QKTKGAIFLSFWAEI 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2146673	345	AT5G04250 [Arabidopsis thalian	0.917	0.904	0.485	2.7e-75
TAIR|locus:2142659	356	AT5G03330 [Arabidopsis thalian	0.920	0.879	0.459	5.1e-74
TAIR|locus:2078648	219	AT3G02070 [Arabidopsis thalian	0.514	0.799	0.613	6.6e-58
TAIR|locus:2091633	245	AT3G22260 [Arabidopsis thalian	0.635	0.881	0.472	1e-52
DICTYBASE|DDB_G0284757	766	DDB_G0284757 "OTU domain conta	0.6	0.266	0.35	1.4e-23
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.335	0.121	0.327	3.8e-13
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.335	0.121	0.327	3.8e-13
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.394	0.305	0.305	3.1e-12
TAIR|locus:2056133	189	AT2G39320 [Arabidopsis thalian	0.25	0.449	0.413	3.9e-11
MGI|MGI:1859615	566	Otud5 "OTU domain containing 5	0.414	0.249	0.281	1.6e-10

TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)]

 Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
 Identities = 167/344 (48%), Positives = 222/344 (64%)

Query:     4 FEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHF-KEDHYETESCDVESDEL 62
             +E D D L+WGL   E     N G  ++VT  +      Q + +E + +  +  V++D +
Sbjct:     3 YEPDPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPVTGYVDNDAV 62

Query:    63 IAHALQEELSQLAVSEAS---------------ESPHETEENLQGP---VFQHGWVNHSV 104
             IA   Q+ELS++A +EAS                 PH+ +EN QG    + Q   + H+ 
Sbjct:    63 IAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHPHQGQEN-QGEAIDITQESDILHNH 121

Query:   105 GGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMV 164
              G    +   +   +  Q S    S ++ S C  E        +E +   EVGKRLNQM+
Sbjct:   122 NGNMEDKNVARIRFEGGQSSP---SRDDDSVCSVE-------IEEESWS-EVGKRLNQMI 170

Query:   165 PVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEH 224
             P+ HVP+INGE+PS DE   DH+RL +RLQ+Y LVE+K++GDGNCQFR+LSDQ+YR+ EH
Sbjct:   171 PIAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEH 230

Query:   225 HEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVI 284
             H FVR+Q+V QL  N +IYEGYVPMAY DYL+ M  +GEWGDHVTLQAAADL+GV++FVI
Sbjct:   231 HNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLFGVRMFVI 290

Query:   285 TSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPI 328
             TSFKDTCYIEILP+ ++S R+I LSFWAEVHYNSIYP G + PI
Sbjct:   291 TSFKDTCYIEILPHFQKSNRLICLSFWAEVHYNSIYPEG-ELPI 333

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 157/342 (45%), Positives = 225/342 (65%)

Query:     1 MITFEQDSDVLQW--GLQLFESDPY-LNCGYTN---TVTPDDESYYYGQHFKEDHYETES 54
             M++ E+++ +++W  G   +   PY +   + +    V      +  G++++E + +  S
Sbjct:     1 MVSHEENTSIVEWFLGPHPYTYPPYGIEMIHEDDEVAVAHHHHHHQSGEYYRE-YEDHRS 59

Query:    55 CDVESDELIAHALQEELSQLAVSEASESPHETEENL-QGPVFQHGWVNHSVGGY------ 107
              DV++DE+IA  LQ++  QL ++E+++  H+ ++   Q   + + + N++  GY      
Sbjct:    60 SDVDNDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNN-NGYAWNDQS 118

Query:   108 ----YS----GQETGQE-EADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGK 158
                 YS    G +  Q+  +DD+     CSS  +     +E+ Y  E +D+   DGE G+
Sbjct:   119 PAVDYSSEWIGNDNDQDGRSDDSVNVFSCSSPSDT----DEYVYSWE-SDQCDADGEFGR 173

Query:   159 RLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQI 218
             RLNQMVP+P++P+INGEIP  +EA  DH+RL  RL+++D  E KV GDGNCQFRAL+DQ+
Sbjct:   174 RLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRALADQL 233

Query:   219 YRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG 278
             Y+TA+ H+ VR+QIV QLKS PD Y+GYVPM + DYL KMS SGEWGDHVTLQAAAD Y 
Sbjct:   234 YKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAADAYR 293

Query:   279 VKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIY 320
             VKI V+TSFKDTCYIEILP  + S  VI+LSFWAEVHYN+IY
Sbjct:   294 VKIVVLTSFKDTCYIEILPTSQESKGVIFLSFWAEVHYNAIY 335

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 108/176 (61%), Positives = 141/176 (80%)

Query:   146 LTDEYA-LDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQ 204
             L++EY+ LDG VG+RL+ + PVPHVPRIN  IP++++ATLDHQRLL+RL VY L E KV 
Sbjct:    26 LSEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQRLNVYGLCELKVS 85

Query:   205 GDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEW 264
             GDGNCQFRALSDQ+YR+ E+H+ VR+++V QLK    +YE YVPM Y  Y +KM + GEW
Sbjct:    86 GDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEW 145

Query:   265 GDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIY 320
             GDH+TLQAAAD +  KI ++TSF+DTC+IEI+P  +    V++LSFW+EVHYNS+Y
Sbjct:   146 GDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFWSEVHYNSLY 201

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 103/218 (47%), Positives = 147/218 (67%)

Query:   108 YSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYAL--DGEVGKRLNQMVP 165
             ++   T    +  T  SS  S    V+   ++ +  + L ++ +L  +G++GKRL+ +  
Sbjct:     9 FANASTSARASGSTSASSNSSFSSSVADTDDDQTIARILAEDESLRREGKLGKRLSHLDS 68

Query:   166 VPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHH 225
             +PH PR+N EIP I++ATLDH+ L  RL  Y L E +++GDGNCQFRAL+DQ++R A++H
Sbjct:    69 IPHTPRVNREIPDINDATLDHELLSGRLATYGLAELQMEGDGNCQFRALADQLFRNADYH 128

Query:   226 EFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVIT 285
             + VR+ +V QLK    +YE YVPM Y  Y  KM + GEWGDHVTLQAAAD +  KI ++T
Sbjct:   129 KHVRKHVVKQLKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTLQAAADRFEAKICLVT 188

Query:   286 SFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAG 323
             SF+D  YIEILP+ +  +R  +LSFW+EVHYNS+Y  G
Sbjct:   189 SFRDQSYIEILPHNKNPLREAWLSFWSEVHYNSLYANG 226

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 281 (104.0 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 77/220 (35%), Positives = 117/220 (53%)

Query:   115 QEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVP-VPHVPRIN 173
             +++    Q S+  S H    +  +++S   E+     L+G V K +N     +     +N
Sbjct:   548 RKQQQQQQQSNSSSPHIVGGHVQDQYS---EIKTNLLLEGLVLKNMNHDASLISSNVLLN 604

Query:   174 -GEIPSIDEATLDHQRLLERLQVYDLVEHK-VQGDGNCQFRALSDQIYRTAEHHEFVRQQ 231
                +P   E  +  QRL ERL++Y L   K + GDGNCQ  ALSDQ+Y    H + VR+ 
Sbjct:   605 LHPLPQSKEVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKT 664

Query:   232 IVAQLKSNPDIY--EG-----YVPMA-YGDYLEKMSESGEWGDHVTLQAAADLYGVKIFV 283
             IV  L+ N D     G     +V    + DY   MS++G WGDH+TL AAA+ +G KI +
Sbjct:   665 IVDWLRKNKDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISI 724

Query:   284 ITSFKDTC--YIEILPNVERSIRVIYLSFWAEVHYNSIYP 321
             I+S +     +IEI+P+   + +V+ LS +AE HY S+ P
Sbjct:   725 ISSVESQSNFFIEIIPSKILNDKVLLLSHYAEFHYGSLCP 764

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 202 (76.2 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 39/119 (32%), Positives = 71/119 (59%)

Query:   203 VQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLEKMSE 260
             ++ DGNC FRA+SDQ+Y   E+++ +R+++V  L  N ++Y+ ++    +Y  Y+E++S 
Sbjct:    55 IRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISL 114

Query:   261 SGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSI 319
              G WG  + LQA  ++Y V I +    ++ C +EI  N     + + L + +  HYNS+
Sbjct:   115 DGTWGGQLELQAVGEIYKVNILIYQ--ENGCILEI-KNHSDDNKCLQLHYASSEHYNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 202 (76.2 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 39/119 (32%), Positives = 71/119 (59%)

Query:   203 VQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLEKMSE 260
             ++ DGNC FRA+SDQ+Y   E+++ +R+++V  L  N ++Y+ ++    +Y  Y+E++S 
Sbjct:    55 IRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISL 114

Query:   261 SGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSI 319
              G WG  + LQA  ++Y V I +    ++ C +EI  N     + + L + +  HYNS+
Sbjct:   115 DGTWGGQLELQAVGEIYKVNILIYQ--ENGCILEI-KNHSDDNKCLQLHYASSEHYNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 189 (71.6 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 44/144 (30%), Positives = 78/144 (54%)

Query:   191 ERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVP-- 248
             ++L+ +  +   V GDGNC FR+++DQ+      H   R+ I   ++ N D++  ++   
Sbjct:    57 QQLEPFGFIIKDVAGDGNCLFRSIADQLQDAPNEHRKYREAICKYIEKNKDMFAPFIDDE 116

Query:   249 --MAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNV--ERSIR 304
                ++ +Y+++M E   WG HV +QAA+  Y V I +     D    EI+ +   E++ +
Sbjct:   117 EFESFEEYIQEMREDATWGGHVEIQAASLAYNVNITIHQM--DQPRWEIVNHFPPEKN-K 173

Query:   305 VIYLSFWAEVHYNSIYPAGGK-YP 327
              I+LS+  + HYNS+ PA    YP
Sbjct:   174 TIHLSYHNDEHYNSVRPANQSLYP 197

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2056133 AT2G39320 [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 36/87 (41%), Positives = 53/87 (60%)

Query:   235 QLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIE 294
             QL  N D +E  V          +S + +WGD VTL+ AAD+Y VKI +ITS K   ++E
Sbjct:    16 QLYQNSDCHE-LVRQEIVKQNMSLSTNSQWGDEVTLRVAADVYQVKIILITSIKLIPFME 74

Query:   295 ILPNVERSI-RVIYLSFWAEVHYNSIY 320
              LP  ++   +VI++S+ A +H+NSIY
Sbjct:    75 FLPKSQKEPDKVIHMSYLAGIHFNSIY 101

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

MGI|MGI:1859615 Otud5 "OTU domain containing 5" [Mus musculus (taxid:10090)]

 Score = 176 (67.0 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 42/149 (28%), Positives = 78/149 (52%)

Query:   176 IPSIDEATLDHQRLLERLQVYD---LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQI 232
             I ++D AT++ Q       + D    +  +++ DG C FRA++DQ+Y   + HE VR+  
Sbjct:   188 IEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHC 247

Query:   233 VAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG--VKIFVITSFKDT 290
             +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   V+++  ++    
Sbjct:   248 MDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPIN 307

Query:   291 CYIEILPNVERSIRVIYLSFWAEVHYNSI 319
              +  I  N +  IRV   S+   +HYNS+
Sbjct:   308 TFHGIHQNEDEPIRV---SYHRNIHYNSV 333

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023222001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (336 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	9e-25

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 96.8 bits (241), Expect = 9e-25
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)

Query: 205 GDGNCQFRALSDQIY--RTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESG 262
           GDGNC F A+SDQ+      E H+ +R+ +V  L+ N + +E ++     +Y + +S+ G
Sbjct: 2   GDGNCLFHAVSDQLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKDG 61

Query: 263 EWGDHVTLQAAADLYGVKIFV--ITSFKDTCYIEILP-----NVERSIRVIYLSFWA-EV 314
            WG ++ + A A +  V I V  +   + T YI+I       N +  IR+ YL       
Sbjct: 62  AWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGN 121

Query: 315 HY 316
           HY
Sbjct: 122 HY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	100.0
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.92
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.89
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.71
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.46
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.29
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.51
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.48

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-34  Score=284.91  Aligned_cols=314  Identities=31%  Similarity=0.374  Sum_probs=241.4

Q ss_pred             cccccCCCeeeeeccccCCCCCCC----CCCCCcccc-CCCCCCccccccccccccc-cccccchHHHHHHHHHHHhHHh
Q 019511            2 ITFEQDSDVLQWGLQLFESDPYLN----CGYTNTVTP-DDESYYYGQHFKEDHYETE-SCDVESDELIAHALQEELSQLA   75 (340)
Q Consensus         2 ~~~~~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~-~d~~~~~~~~~~~~~~~~~-~~~~~~d~~ia~~~q~e~~~~~   75 (340)
                      +.++++|.+++|.|+-+..+....    .|-+..+.+ .+.++....+.+ ++|+.. .-.|.+|++||+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~~-~~~~~~r~~~v~~~~~~~~~~~d~~~~~e   79 (371)
T KOG2605|consen    1 TFREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMGT-DGYNNKRYGEVDRDFMIARGHQDEVLTVE   79 (371)
T ss_pred             CCccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCcccee-ccccCccccchhhhhhhhccccccccccc
Confidence            357889999999999655343333    355566655 455666667777 555554 4589999999999999999999


Q ss_pred             hhhhcCCCCCccccccccccccC-CCCCCCCCcC------------CCCCCCccccC--------CCCCCCCCCCCCCCc
Q 019511           76 VSEASESPHETEENLQGPVFQHG-WVNHSVGGYY------------SGQETGQEEAD--------DTQPSSLCSSHEEVS  134 (340)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~--------~~~~~~~~~~~~~~~  134 (340)
                      .+|.+...+.-..    +++.++ |..++...-+            .|+...+-.+.        ...-++.|+-.+.. 
T Consensus        80 ~~e~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~~~~~s-  154 (371)
T KOG2605|consen   80 DAEMAAICQSVLF----KVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWLGQSPS-  154 (371)
T ss_pred             HHHHhhHHhhhhh----hhhhhhcccCCCCCcccccCCCCCcccccccccccccccccccccchhhhccCchhcccccc-
Confidence            9999999876555    455555 3332222111            11222111111        11101111111111 


Q ss_pred             CCCCCccccccccc-ccccchhhhhhccCCCCCCCCCCCCCCCCCCcHHhHHHHHHHHHhhhCCcEEEEecCCCChHHHH
Q 019511          135 YCGEEWSYPQELTD-EYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRA  213 (340)
Q Consensus       135 ~~~~~~~~~~~~~~-~~~~d~~~gkrl~~~~p~p~~p~~ng~iPs~dea~~d~~rL~~rL~~~GL~i~~V~GDGNCLFRA  213 (340)
                       +......+.+... ....+.++|.+++++.|++.+|.+++.+|+..+...+++++.+++..+|+.+++|.+||||+|||
T Consensus       155 -d~~~~~~~~~~~~~~~~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra  233 (371)
T KOG2605|consen  155 -DPLRSVPSMEAIHARHPEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRA  233 (371)
T ss_pred             -ccccccccccchhhccccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhhc
Confidence             1112223333222 12567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCCchHHHHHHHH--HhCCcEEEEEcCCCce
Q 019511          214 LSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAAD--LYGVKIFVITSFKDTC  291 (340)
Q Consensus       214 lS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELqA~A~--lf~v~I~V~ts~~~t~  291 (340)
                      +|+|||++.+.|.++|++++++++++++.|+.|+++++.+|+++|++++.||+|+|+||+|.  -+..++.++++.+.++
T Consensus       234 ~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~  313 (371)
T KOG2605|consen  234 LADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTC  313 (371)
T ss_pred             cHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccc
Confidence            99999999999999999999999999999999999999999999999999999999999998  6778888888899999


Q ss_pred             EEEecCCCCCCCCeEEEEeCCCCeeeeeecC
Q 019511          292 YIEILPNVERSIRVIYLSFWAEVHYNSIYPA  322 (340)
Q Consensus       292 ~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~  322 (340)
                      ++.+.|....+...+++.||...||+.++..
T Consensus       314 ~~~~~~~~~~~~~~~~~n~~~~~h~~~~~~~  344 (371)
T KOG2605|consen  314 YIQTPPAIEESVKMEKYNFWVEVHYNTARHS  344 (371)
T ss_pred             eeccCcccccchhhhhhcccchhhhhhcccc
Confidence            9988887777777899999999999999985

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.92  E-value=2.1e-25  Score=184.83  Aligned_cols=107  Identities=36%  Similarity=0.621  Sum_probs=91.8

Q ss_pred             cCCCChHHHHHHHHHh----cCchhHHHHHHHHHHHHh-cCcccccccCCCcHHHHHHhhccCCCCCchHHHHHHHHHhC
Q 019511          204 QGDGNCQFRALSDQIY----RTAEHHEFVRQQIVAQLK-SNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYG  278 (340)
Q Consensus       204 ~GDGNCLFRAlS~qL~----g~q~~H~~LR~~vV~yL~-~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELqA~A~lf~  278 (340)
                      ||||||||||||+||+    +++..|..||++|+++|+ +|++.|..|+..+      +|+++|+||+++||+|+|++|+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~   74 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN   74 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence            7999999999999999    999999999999999999 9999988887544      8999999999999999999999


Q ss_pred             CcEEEEEcCCCc--eEEEecCC--CCCCCCeEEEEeCC-----CCee
Q 019511          279 VKIFVITSFKDT--CYIEILPN--VERSIRVIYLSFWA-----EVHY  316 (340)
Q Consensus       279 v~I~V~ts~~~t--~~I~i~P~--~~~~~~~I~Lsy~~-----~~HY  316 (340)
                      ++|+|++.....  .++.+.+.  .....++|+|+|..     ++||
T Consensus        75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            999999875543  33444331  24567889999998     9998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=2e-23  Score=199.14  Aligned_cols=142  Identities=18%  Similarity=0.353  Sum_probs=122.0

Q ss_pred             cHHhHHHHHHHHHhhhCCcEEEEecCCCChHHHHHHHHHhcC---chhHHHHHHHHHHHHhcCcccccccCC--------
Q 019511          180 DEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRT---AEHHEFVRQQIVAQLKSNPDIYEGYVP--------  248 (340)
Q Consensus       180 dea~~d~~rL~~rL~~~GL~i~~V~GDGNCLFRAlS~qL~g~---q~~H~~LR~~vV~yL~~n~d~y~~fv~--------  248 (340)
                      +...++.+.|.+.|...||...+||.||+|||+||++||.-.   .-..+.||..+++||++|.+.|.+|+.        
T Consensus       141 ~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~  220 (302)
T KOG2606|consen  141 DAKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL  220 (302)
T ss_pred             chhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC
Confidence            344677788999999999999999999999999999999653   256899999999999999999999862        


Q ss_pred             --CcHHHHHHhhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCceEEEecCCCCCCCCeEEEEeCC-----CCeeeeeec
Q 019511          249 --MAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWA-----EVHYNSIYP  321 (340)
Q Consensus       249 --~~~~eYl~kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~-----~~HYdSV~~  321 (340)
                        .+|+.||+.|+.++.|||++||.|+|.+|++||.||...++.  +.+.+...+ .+||.|+|+.     |.||||+.+
T Consensus       221 ~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~--~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~  297 (302)
T KOG2606|consen  221 GPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPI--LEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTP  297 (302)
T ss_pred             CHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCc--eeechhhCC-CCCeeeehHHhHHHHHhhhccccc
Confidence              259999999999999999999999999999999999987653  445543333 6899999987     799999988


Q ss_pred             CCC
Q 019511          322 AGG  324 (340)
Q Consensus       322 ~~d  324 (340)
                      ...
T Consensus       298 ~~n  300 (302)
T KOG2606|consen  298 LKN  300 (302)
T ss_pred             ccc
Confidence            654

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=9.1e-18  Score=158.02  Aligned_cols=134  Identities=22%  Similarity=0.359  Sum_probs=110.7

Q ss_pred             CcEEEEecCCCChHHHHHHHHHhcCch-hHHHHHHHHHHHHhcCccccccc-CCCcHHHHHHhhccCCCCCchHHHHHHH
Q 019511          197 DLVEHKVQGDGNCQFRALSDQIYRTAE-HHEFVRQQIVAQLKSNPDIYEGY-VPMAYGDYLEKMSESGEWGDHVTLQAAA  274 (340)
Q Consensus       197 GL~i~~V~GDGNCLFRAlS~qL~g~q~-~H~~LR~~vV~yL~~n~d~y~~f-v~~~~~eYl~kMsk~gtWGg~iELqA~A  274 (340)
                      -|.++.||.|+.|||+||++.+.+.-. ...+||+.|.+.+.+||+.|+.. ++..-.+||.++.|+..|||.|||.++|
T Consensus       109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS  188 (307)
T KOG3288|consen  109 VLSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILS  188 (307)
T ss_pred             eeEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeeh
Confidence            355677999999999999999988643 23699999999999999999865 5778899999999999999999999999


Q ss_pred             HHhCCcEEEEEcCCCceEEEecCCCCCCCCeEEEEeCCCCeeeeeecCC---CCCCeeeecc
Q 019511          275 DLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAG---GKYPIFVFMD  333 (340)
Q Consensus       275 ~lf~v~I~V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~---d~~P~~~~~~  333 (340)
                      +.|++.|+|++...  ..|+-+.........++|.| +|.|||++....   +..|.++||.
T Consensus       189 ~~ygveI~vvDiqt--~rid~fged~~~~~rv~lly-dGIHYD~l~m~~~~~~~~~~tifp~  247 (307)
T KOG3288|consen  189 DYYGVEICVVDIQT--VRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNEFKPTDVDNTIFPV  247 (307)
T ss_pred             hhhceeEEEEecce--eeehhcCCCCCCCceEEEEe-cccccChhhhccCCccCCccccccc
Confidence            99999999998653  33443333444566788989 699999998755   3578888874

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.46  E-value=4.8e-13  Score=125.03  Aligned_cols=94  Identities=31%  Similarity=0.420  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhcCcccccccCC----CcHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCC-----ceEEEec
Q 019511          227 FVRQQIVAQLKSNPDIYEGYVP----MAYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKD-----TCYIEIL  296 (340)
Q Consensus       227 ~LR~~vV~yL~~n~d~y~~fv~----~~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~-----t~~I~i~  296 (340)
                      .+|-.+..||+.|++.|.+|+.    .++++||+ .+...+.-.||+.|.|||++++++|.|+..+++     .....+.
T Consensus       141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~  220 (244)
T PF10275_consen  141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP  220 (244)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence            7899999999999999999996    68999997 578888889999999999999999999987754     1222333


Q ss_pred             CCCCCCCCeEEEEeCCCCeeeeeec
Q 019511          297 PNVERSIRVIYLSFWAEVHYNSIYP  321 (340)
Q Consensus       297 P~~~~~~~~I~Lsy~~~~HYdSV~~  321 (340)
                      |......+.|.|.|. +.|||.++|
T Consensus       221 ~~~~~~~~~i~LLyr-pgHYdIly~  244 (244)
T PF10275_consen  221 PDNESQEPQITLLYR-PGHYDILYP  244 (244)
T ss_dssp             -SSTTSS-SEEEEEE-TBEEEEEEE
T ss_pred             CccCCCCCEEEEEEc-CCccccccC
Confidence            333456788999995 679999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=6.6e-12  Score=117.15  Aligned_cols=94  Identities=23%  Similarity=0.395  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhcCcccccccCC--CcHHHHHHh-hccCCCCCchHHHHHHHHHhCCcEEEEEcCCCce-EE--EecCCC
Q 019511          226 EFVRQQIVAQLKSNPDIYEGYVP--MAYGDYLEK-MSESGEWGDHVTLQAAADLYGVKIFVITSFKDTC-YI--EILPNV  299 (340)
Q Consensus       226 ~~LR~~vV~yL~~n~d~y~~fv~--~~~~eYl~k-Msk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t~-~I--~i~P~~  299 (340)
                      +.+|..+..+|++|++.|.+|++  ++.++||.. +....+-.|||+|-||++.+++.|.|...+++.+ ..  ..+|  
T Consensus       157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp--  234 (256)
T KOG3991|consen  157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP--  234 (256)
T ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc--
Confidence            57899999999999999999996  589999985 5566777999999999999999999998776533 11  1222  


Q ss_pred             CCCCCeEEEEeCCCCeeeeeecC
Q 019511          300 ERSIRVIYLSFWAEVHYNSIYPA  322 (340)
Q Consensus       300 ~~~~~~I~Lsy~~~~HYdSV~~~  322 (340)
                      ....+.|+|.| ...|||.||+.
T Consensus       235 e~s~P~I~LLY-rpGHYdilY~~  256 (256)
T KOG3991|consen  235 EASAPEIYLLY-RPGHYDILYKK  256 (256)
T ss_pred             cccCceEEEEe-cCCccccccCC
Confidence            45677899999 68999999874

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.8e-08  Score=97.12  Aligned_cols=100  Identities=16%  Similarity=0.154  Sum_probs=78.2

Q ss_pred             CCcEEEEecCCCChHHHHHHHHHhcC-----chhHHHHHHHHHHHHhcCcccccccCC-------CcHHHHHHhhccCCC
Q 019511          196 YDLVEHKVQGDGNCQFRALSDQIYRT-----AEHHEFVRQQIVAQLKSNPDIYEGYVP-------MAYGDYLEKMSESGE  263 (340)
Q Consensus       196 ~GL~i~~V~GDGNCLFRAlS~qL~g~-----q~~H~~LR~~vV~yL~~n~d~y~~fv~-------~~~~eYl~kMsk~gt  263 (340)
                      .+++-..+.|||+|+|-+||+||.-.     -+..+..|-.=..|..++...|.++.-       ..|++|++.|..+..
T Consensus       169 ~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~~~~a~  248 (306)
T COG5539         169 TWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEVLFDAS  248 (306)
T ss_pred             HhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhhccccc
Confidence            35555679999999999999998432     123466676667777777777877641       379999999999999


Q ss_pred             CCchHHHHHHHHHhCCcEEEEEcCCCceEEEecC
Q 019511          264 WGDHVTLQAAADLYGVKIFVITSFKDTCYIEILP  297 (340)
Q Consensus       264 WGg~iELqA~A~lf~v~I~V~ts~~~t~~I~i~P  297 (340)
                      ||..+|+++||..|++|+.++...+.  .|.+.+
T Consensus       249 ~g~~~ei~qLas~lk~~~~~~nT~~~--~ik~n~  280 (306)
T COG5539         249 DGITIEIQQLASLLKNPHYYTNTASP--SIKCNI  280 (306)
T ss_pred             ccchHHHHHHHHHhcCceEEeecCCc--eEEeec
Confidence            99999999999999999999987654  344443

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=4.7e-08  Score=94.22  Aligned_cols=110  Identities=18%  Similarity=0.242  Sum_probs=91.5

Q ss_pred             CCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCC-cHHHHHHhhccCCCCC-chHHHHHHHHHhCCcEE
Q 019511          205 GDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPM-AYGDYLEKMSESGEWG-DHVTLQAAADLYGVKIF  282 (340)
Q Consensus       205 GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~-~~~eYl~kMsk~gtWG-g~iELqA~A~lf~v~I~  282 (340)
                      .|..|+|+|++..++..  .-.+||..+...+.+||+.|...+.+ +--.|+.++.+...|| |+||+.++++.+++.|+
T Consensus       119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~  196 (306)
T COG5539         119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH  196 (306)
T ss_pred             CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence            57999999999998753  67899999999999999999998754 7889999999999999 99999999999999999


Q ss_pred             EEEcCCCceEEEecCCCCCCCCeEEEEeCCCCeeeeee
Q 019511          283 VITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIY  320 (340)
Q Consensus       283 V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~  320 (340)
                      ++....+.. -++.+  .+....|.+.| .+.|||...
T Consensus       197 ~Vdv~~~~~-dr~~~--~~~~q~~~i~f-~g~hfD~~t  230 (306)
T COG5539         197 VVDVDKDSE-DRYNS--HPYVQRISILF-TGIHFDEET  230 (306)
T ss_pred             eeecchhHH-hhccC--Chhhhhhhhhh-cccccchhh
Confidence            998876532 12332  22334577778 589999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		1e-11
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		2e-10
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		5e-10

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 13/155 (8%)
Query: 175 EIPSIDEATLDHQRLLERLQVYD---LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQ 231
            I ++D AT++ Q       + D    +  +++ DG C FRA++DQ+Y   + HE VR+ 
Sbjct: 20  RIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKH 79
Query: 232 IVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTC 291
            +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   + V      T 
Sbjct: 80  CMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTS 139
Query: 292 YIE-------ILPNVERSIRVIYLSFWAEVHYNSI 319
            +E       I  N +  IRV   S+   +HYNS+
Sbjct: 140 AVEPINTFHGIHQNEDEPIRV---SYHRNIHYNSV 171

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 206 DGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWG 265
           DG C FRA++DQ+Y   + HE VR+     L  N D +  YV   +  Y+ +  ++   G
Sbjct: 67  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 126
Query: 266 DHVTLQAAADLYG--VKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSI 319
           +H+  QA A+ Y   V+++  ++     +  I  N +  IRV   S+   +HYNS+
Sbjct: 127 NHIEXQAXAEXYNRPVEVYQYSTEPINTFHGIHQNEDEPIRV---SYHRNIHYNSV 179

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 206 DGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWG 265
           DG C FRA++DQ+Y   + HE VR+     L  N D +  YV   +  Y+ +  ++   G
Sbjct: 54  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 266 DHVTLQAAADLYGVKIFVITSFKDTCYIE-------ILPNVERSIRVIYLSFWAEVHYNS 318
           +H+  QA A+ Y   + V      T  +E       I  N +  IRV   S+   +HYNS
Sbjct: 114 NHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRV---SYHRNIHYNS 170
Query: 319 I 319
           +
Sbjct: 171 V 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
3pfy_A	185	OTU domain-containing protein 5; structural genomi	2e-35
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-30
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	7e-29
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-26
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	4e-07
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	1e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  126 bits (317), Expect = 2e-35
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 4/152 (2%)

Query: 173 NGEIPSIDEATLDHQR---LLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVR 229
              I ++D AT++ Q              +  +++ DG C FRA++DQ+Y   + HE VR
Sbjct: 31  AARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVR 90

Query: 230 QQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKD 289
           +  +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   + V   +  
Sbjct: 91  KHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVY-QYST 149

Query: 290 TCYIEILPNVERSIRVIYLSFWAEVHYNSIYP 321
                     +     I +S+   +HYNS+  
Sbjct: 150 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 181

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  113 bits (283), Expect = 2e-30
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 10/139 (7%)

Query: 191 ERLQVYDLVE-HKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVP- 248
            R  + D  E  +  GDGNC + ++++        H      I    +S    Y    P 
Sbjct: 23  PRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDH--SYHYIKRLTESAARKYYQEEPE 80

Query: 249 -----MAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEIL-PNVERS 302
                ++  DYL++M    EWG  +     A   G+ I + T          +       
Sbjct: 81  ARLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDV 140

Query: 303 IRVIYLSFWAEVHYNSIYP 321
              + L    + H++++  
Sbjct: 141 FTAVNLLHSGQTHFDALRI 159

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  110 bits (275), Expect = 7e-29
 Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 9/133 (6%)

Query: 198 LVEHKVQGDGNCQFRALSDQIYRTAEHH------EFVRQQIVAQLKSNPDIYEGYVPMAY 251
               +  GDGNC + ++++        H                 +  P+     V ++ 
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPE--ARLVGLSL 88

Query: 252 GDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSI-RVIYLSF 310
            DYL++M    EWG  +     A   G+ I + T          +   +  +   + L  
Sbjct: 89  EDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLH 148

Query: 311 WAEVHYNSIYPAG 323
             + H++++    
Sbjct: 149 SGQTHFDALRILP 161

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score =  103 bits (259), Expect = 1e-26
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 198 LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIY-EGYVPMAYGDYLE 256
           L  H V  D +C F A++  I++     + +R+ +  ++ +NP  + +  +     DY +
Sbjct: 20  LSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREMVSKEVLNNPVKFNDAILDKPNKDYAQ 78

Query: 257 KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHY 316
            + +   WG  + +   +D   V I+V+             N ++    I + F    HY
Sbjct: 79  WILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEK---FNEDKFDNYILILFNGI-HY 134

Query: 317 NSIYPA 322
           +S+   
Sbjct: 135 DSLTMN 140

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 4/99 (4%)

Query: 227 FVRQQIVAQLKSNPDIYEGYV--PMAYGDYLEKMSES-GEWGDHVTLQAAADLYGVKIFV 283
           F+R    A +++  D +  ++   M   D+     E      DH+ + A +    + + V
Sbjct: 134 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQV 193

Query: 284 ITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPA 322
               +    +      E +   +YL +    HYN +Y A
Sbjct: 194 EYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAA 231

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 227 FVRQQIVAQLKSNPDIYEGYVP--MAYGDYLEKMSES-GEWGDHVTLQAAADLYGVKI-- 281
           ++R      L+     +E ++       ++ ++  E   +  DH+ + A A    V I  
Sbjct: 137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQV 196

Query: 282 -FVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIY 320
            ++      T    I P  E S   +YL +    HY+ +Y
Sbjct: 197 EYMDRGEGGTTNPHIFP--EGSEPKVYLLYRPG-HYDILY 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	100.0
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.96
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.85
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.8
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.74
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.71
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.72
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.5

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=6.4e-36  Score=269.62  Aligned_cols=135  Identities=25%  Similarity=0.490  Sum_probs=102.7

Q ss_pred             HHHHHHh-hhCCcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCC
Q 019511          187 QRLLERL-QVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWG  265 (340)
Q Consensus       187 ~rL~~rL-~~~GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWG  265 (340)
                      ..+.+.| +.+||++++|+|||||||||||+||++++..|..||+.|++||++|++.|.+|++++|++||++|+++++||
T Consensus        47 ~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WG  126 (185)
T 3pfy_A           47 HWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG  126 (185)
T ss_dssp             HHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------C
T ss_pred             HHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccc
Confidence            3455555 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhCCcEEEEEcCCCceEEEecCC-CCCCCCeEEEEeCCCCeeeeeecCC
Q 019511          266 DHVTLQAAADLYGVKIFVITSFKDTCYIEILPN-VERSIRVIYLSFWAEVHYNSIYPAG  323 (340)
Q Consensus       266 g~iELqA~A~lf~v~I~V~ts~~~t~~I~i~P~-~~~~~~~I~Lsy~~~~HYdSV~~~~  323 (340)
                      |++||+|||++|+++|+|++.....  +.+++. .....++|+|+|++++|||||+...
T Consensus       127 g~iEL~AlS~~~~v~I~V~~~~~~~--i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          127 NHIEMQAMAEMYNRPVEVYQYSTEP--INTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN  183 (185)
T ss_dssp             CHHHHHHHHHHHTSCEEEESSCSSC--SEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred             hHHHHHHHHHhhCCcEEEEECCCCC--eEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence            9999999999999999999875432  333332 3456789999999999999998754

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=100.00  E-value=7e-33  Score=254.03  Aligned_cols=132  Identities=20%  Similarity=0.269  Sum_probs=115.6

Q ss_pred             hhCCcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCccccc-ccCCCcHHHHHHhhccCCCCCchHHHHH
Q 019511          194 QVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYE-GYVPMAYGDYLEKMSESGEWGDHVTLQA  272 (340)
Q Consensus       194 ~~~GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~-~fv~~~~~eYl~kMsk~gtWGg~iELqA  272 (340)
                      ...||.+++|+|||||||||||+|| +++..|..||+.+++||++|++.|. .|++++|++||++|+++++|||++||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            3458999999999999999999999 9999999999999999999999997 5678999999999999999999999999


Q ss_pred             HHHHhCCcEEEEEcCCCceEEEecCCCCCCCCeEEEEeCCCCeeeeeecCCCCCCeeeecc
Q 019511          273 AADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGKYPIFVFMD  333 (340)
Q Consensus       273 ~A~lf~v~I~V~ts~~~t~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~~P~~~~~~  333 (340)
                      ||++|+++|.|++.... ..+.|.+. . ..++|+|+|+ ++|||||++   ..+.++|+.
T Consensus        95 ls~~~~~~I~V~~~~~~-~~~~~~~~-~-~~~~I~L~Y~-g~HYdsl~~---~~d~~~f~~  148 (212)
T 3by4_A           95 ISDALAVAIYVVDIDAV-KIEKFNED-K-FDNYILILFN-GIHYDSLTM---NEFKTVFNK  148 (212)
T ss_dssp             HHHHHTCEEEEEETTTT-EEEEESTT-T-CSEEEEEEEC-SSCEEEEEE---TTTBCCEET
T ss_pred             HHHHHCCCEEEEECCCC-CeEEeCCC-C-CCCeEEEEEc-CCcceEEec---CCCcccCCc
Confidence            99999999999997532 34555543 2 5789999997 899999999   446677764

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=3.9e-30  Score=231.65  Aligned_cols=124  Identities=18%  Similarity=0.346  Sum_probs=107.3

Q ss_pred             cEEEEecCCCChHHHHHHHHHhcC-chh-----HHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCCchHHHH
Q 019511          198 LVEHKVQGDGNCQFRALSDQIYRT-AEH-----HEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQ  271 (340)
Q Consensus       198 L~i~~V~GDGNCLFRAlS~qL~g~-q~~-----H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELq  271 (340)
                      +.+.+|+|||||||||||+||+++ +..     |..||+.+++||++|++.  .+++++|++||++|+++|+|||++||+
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~  108 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence            778889999999999999999998 666     999999999999999999  356899999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEcCCCc---eEEEecCCCCCCCCeEEEEeCCCCeeeeeecCCCC
Q 019511          272 AAADLYGVKIFVITSFKDT---CYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGK  325 (340)
Q Consensus       272 A~A~lf~v~I~V~ts~~~t---~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~  325 (340)
                      |+|++|+++|.|++.....   ..+.+.+  ....++|+|+|++++|||+|++..+.
T Consensus       109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~--~~~~~~I~L~Y~g~~HYdsl~~~~~~  163 (185)
T 3phx_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGD--GDVFTAVNLLHSGQTHFDALRILPQF  163 (185)
T ss_dssp             HHHHHHCCCEEEEEC--CCBCCEEEEESS--CCTTTSEEEEEETTTEEEEEEECGGG
T ss_pred             HHHHHHCCcEEEEEecCCCCceEEEEcCC--CCCCCEEEEEECCCcCchhceECCCC
Confidence            9999999999999866543   2345543  23478999999888999999998763

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.96  E-value=1.5e-29  Score=233.39  Aligned_cols=124  Identities=18%  Similarity=0.349  Sum_probs=108.8

Q ss_pred             cEEEEecCCCChHHHHHHHHHhcC-chh-----HHHHHHHHHHHHhcCcccccccCCCcHHHHHHhhccCCCCCchHHHH
Q 019511          198 LVEHKVQGDGNCQFRALSDQIYRT-AEH-----HEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQ  271 (340)
Q Consensus       198 L~i~~V~GDGNCLFRAlS~qL~g~-q~~-----H~~LR~~vV~yL~~n~d~y~~fv~~~~~eYl~kMsk~gtWGg~iELq  271 (340)
                      +.+.+|+|||||||||||+||+++ +..     |..||+.|++||++|++.  .+++++|++||++|+++|+|||++||+
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~  108 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence            778899999999999999999998 566     999999999999999999  356889999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEcCCC--c-eEEEecCCCCCCCCeEEEEeCCCCeeeeeecCCCC
Q 019511          272 AAADLYGVKIFVITSFKD--T-CYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGGK  325 (340)
Q Consensus       272 A~A~lf~v~I~V~ts~~~--t-~~I~i~P~~~~~~~~I~Lsy~~~~HYdSV~~~~d~  325 (340)
                      |+|++|+++|.|++....  . ..+.|.+.  ...++|+|+|++++|||+|++..+.
T Consensus       109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~  163 (219)
T 3phu_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQF  163 (219)
T ss_dssp             HHHHHTTCCEEEEEESSSSBEEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTT
T ss_pred             HHHHHhCCCEEEEEecCCCCceeEEEecCC--CCCCeEEEEECCCcCchhheECCCC
Confidence            999999999999986654  2 24455443  3478999999988999999998874

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.85  E-value=4.3e-21  Score=178.19  Aligned_cols=96  Identities=19%  Similarity=0.362  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhcCcccccccCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCceEEE--ecCCCC
Q 019511          226 EFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIE--ILPNVE  300 (340)
Q Consensus       226 ~~LR~~vV~yL~~n~d~y~~fv~~--~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t~~I~--i~P~~~  300 (340)
                      ..+|..+..||++|++.|.+|+++  ++++||+ .+...++|||+++|+|||+.++++|.|+..+++...+.  ..|  +
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~--~  210 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFP--E  210 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCC--C
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCC--C
Confidence            468999999999999999999965  8999999 79999999999999999999999999998766542121  122  2


Q ss_pred             CCCCeEEEEeCCCCeeeeeecCCC
Q 019511          301 RSIRVIYLSFWAEVHYNSIYPAGG  324 (340)
Q Consensus       301 ~~~~~I~Lsy~~~~HYdSV~~~~d  324 (340)
                      ...+.|+|+|. +.|||+|++.+.
T Consensus       211 ~~~~~I~LlY~-pgHYdily~~~~  233 (234)
T 1tff_A          211 AATPSVYLLYK-TSHYNILYAADK  233 (234)
T ss_dssp             CSSCSEEEEEE-TTEEEEEEECCC
T ss_pred             CCCCeEEEEEC-CCCceecccCCC
Confidence            34677999997 569999999753

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.80  E-value=3.3e-19  Score=165.38  Aligned_cols=93  Identities=19%  Similarity=0.316  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhcCcccccccCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCc---eEEEecCCC
Q 019511          226 EFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT---CYIEILPNV  299 (340)
Q Consensus       226 ~~LR~~vV~yL~~n~d~y~~fv~~--~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t---~~I~i~P~~  299 (340)
                      ..+|..++.||++|++.|.+|+++  ++++||+ .+..+++|||+++|+|||++|+++|.|+..++..   ......|. 
T Consensus       136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~-  214 (234)
T 2zfy_A          136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE-  214 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST-
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC-
Confidence            478999999999999999999975  8999998 5999999999999999999999999999876543   12222333 


Q ss_pred             CCCCCeEEEEeCCCCeeeeeec
Q 019511          300 ERSIRVIYLSFWAEVHYNSIYP  321 (340)
Q Consensus       300 ~~~~~~I~Lsy~~~~HYdSV~~  321 (340)
                       ...++|+|+|. +.|||+|+|
T Consensus       215 -~~~p~I~LlY~-pgHYdiLy~  234 (234)
T 2zfy_A          215 -GSEPKVYLLYR-PGHYDILYK  234 (234)
T ss_dssp             -TCCCSEEEEEE-TTEEEEEEC
T ss_pred             -CCCCeEEEEEC-CCCcccCCC
Confidence             34678999997 469999986

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.74  E-value=1.3e-17  Score=159.06  Aligned_cols=97  Identities=22%  Similarity=0.324  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHhcCcccccccCC--CcHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCc----eEEE-ecC
Q 019511          226 EFVRQQIVAQLKSNPDIYEGYVP--MAYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT----CYIE-ILP  297 (340)
Q Consensus       226 ~~LR~~vV~yL~~n~d~y~~fv~--~~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t----~~I~-i~P  297 (340)
                      ..||..+..||++|++.|.+|+.  +++++||+ .+...++||||++|+|||++|+++|.|+..+++.    .... | |
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p  249 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P  249 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence            57899999999999999999996  48999999 8999999999999999999999999999876531    1223 4 6


Q ss_pred             CCCC-CCCeEEEEeCCCCeeeeeecCCC
Q 019511          298 NVER-SIRVIYLSFWAEVHYNSIYPAGG  324 (340)
Q Consensus       298 ~~~~-~~~~I~Lsy~~~~HYdSV~~~~d  324 (340)
                      .... ..+.|+|.| .+.|||.||+..-
T Consensus       250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p  276 (284)
T 4dhi_B          250 SDDQQIAPEITLLY-RPGHYDVIYKKDS  276 (284)
T ss_dssp             CCCSCCCCSEEEEE-ETTEEEEEEECC-
T ss_pred             CCCCCCCCEEEEee-cCCCccccccCCC
Confidence            5432 346799999 5789999999863

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.71  E-value=1.6e-17  Score=164.37  Aligned_cols=94  Identities=19%  Similarity=0.309  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhcCcccccccCCC--cHHHHHH-hhccCCCCCchHHHHHHHHHhCCcEEEEEcCCCc-eEE--EecCC
Q 019511          225 HEFVRQQIVAQLKSNPDIYEGYVPM--AYGDYLE-KMSESGEWGDHVTLQAAADLYGVKIFVITSFKDT-CYI--EILPN  298 (340)
Q Consensus       225 H~~LR~~vV~yL~~n~d~y~~fv~~--~~~eYl~-kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t-~~I--~i~P~  298 (340)
                      ...||..+..||++|++.|.+|+++  ++++||+ .+...++||||++|+|||+.|+++|.|+..++.. ..+  ...|.
T Consensus       300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~  379 (399)
T 4ddg_A          300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE  379 (399)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred             HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence            3468999999999999999999965  7999999 8999999999999999999999999999765521 111  12333


Q ss_pred             CCCCCCeEEEEeCCCCeeeeeec
Q 019511          299 VERSIRVIYLSFWAEVHYNSIYP  321 (340)
Q Consensus       299 ~~~~~~~I~Lsy~~~~HYdSV~~  321 (340)
                        ...+.|+|.| ...|||.||+
T Consensus       380 --~~~~~I~LLY-rPgHYDiLY~  399 (399)
T 4ddg_A          380 --GSEPKVYLLY-RPGHYDILYK  399 (399)
T ss_dssp             --TCCCCCEEEE-ETBEEEEEEC
T ss_pred             --CCCCEEEEEE-cCCccccCCC
Confidence              3467899999 5789999986

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.72  E-value=7e-08  Score=94.52  Aligned_cols=127  Identities=20%  Similarity=0.372  Sum_probs=88.6

Q ss_pred             CcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCcc-cc-----------cccC-------C----CcHHH
Q 019511          197 DLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPD-IY-----------EGYV-------P----MAYGD  253 (340)
Q Consensus       197 GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d-~y-----------~~fv-------~----~~~~e  253 (340)
                      .|....+.||||||.+|+|.+++|-.+....+|+.+.+-|++... .|           ..|.       .    .+|+.
T Consensus       111 rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~  190 (390)
T 3dkb_A          111 KLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDN  190 (390)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHH
T ss_pred             ceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHH
Confidence            366778999999999999999999999999999999999998642 11           1222       1    24444


Q ss_pred             HHHhhccCCC--------C--CchHHHHHHHHHhCCcEEEEEcC--C----CceE--E----EecC----CCCCCCCeEE
Q 019511          254 YLEKMSESGE--------W--GDHVTLQAAADLYGVKIFVITSF--K----DTCY--I----EILP----NVERSIRVIY  307 (340)
Q Consensus       254 Yl~kMsk~gt--------W--Gg~iELqA~A~lf~v~I~V~ts~--~----~t~~--I----~i~P----~~~~~~~~I~  307 (340)
                      -+ +|+.+..        +  =-++-+.++|++++|||+|+...  +    +..+  +    .+.|    ...+.+.||.
T Consensus       191 Iv-~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~  269 (390)
T 3dkb_A          191 LI-KMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIV  269 (390)
T ss_dssp             HH-HHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEE
T ss_pred             HH-HHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceE
Confidence            34 3443321        1  13677899999999999999532  1    1111  1    1233    3456678999


Q ss_pred             EEeCCCCeeeeeecCCCC
Q 019511          308 LSFWAEVHYNSIYPAGGK  325 (340)
Q Consensus       308 Lsy~~~~HYdSV~~~~d~  325 (340)
                      |+|. ..||.+|++.++.
T Consensus       270 LgY~-s~HFsaLV~me~~  286 (390)
T 3dkb_A          270 LGYD-SHHFVPLVTLKDS  286 (390)
T ss_dssp             EEEC-SSCEEEEEEBCSS
T ss_pred             EEec-cCceeeeeecccC
Confidence            9996 5899999998753

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.50  E-value=4.1e-07  Score=90.49  Aligned_cols=128  Identities=13%  Similarity=0.139  Sum_probs=92.4

Q ss_pred             CcEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhcCccccc----------------ccC--C----CcHHHH
Q 019511          197 DLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYE----------------GYV--P----MAYGDY  254 (340)
Q Consensus       197 GL~i~~V~GDGNCLFRAlS~qL~g~q~~H~~LR~~vV~yL~~n~d~y~----------------~fv--~----~~~~eY  254 (340)
                      .|......||||||.+|+|..++|.++....||+.+.+-|++....|.                .|.  +    .+|+.-
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i  267 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI  267 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence            466678999999999999999999999999999999999987533221                122  2    234444


Q ss_pred             HHhhccCCCCCchHHHHHHHHHhCCcEEEEEcCC-----CceE--E----EecCC----CCCCCCeEEEEeCCCCeeeee
Q 019511          255 LEKMSESGEWGDHVTLQAAADLYGVKIFVITSFK-----DTCY--I----EILPN----VERSIRVIYLSFWAEVHYNSI  319 (340)
Q Consensus       255 l~kMsk~gtWGg~iELqA~A~lf~v~I~V~ts~~-----~t~~--I----~i~P~----~~~~~~~I~Lsy~~~~HYdSV  319 (340)
                      ++.-+.+|+==-++-+.++|+++++||+|+...-     +..+  +    .+.|-    ....+.||.|+|. ..||.+|
T Consensus       268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~-~gHFsaL  346 (454)
T 3zrh_A          268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYT-RGHFSAL  346 (454)
T ss_dssp             HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEE-TTEEEEE
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEec-ccceeee
Confidence            5545566654556888999999999999997532     1100  1    13342    3456789999997 5799999


Q ss_pred             ecCCCC
Q 019511          320 YPAGGK  325 (340)
Q Consensus       320 ~~~~d~  325 (340)
                      ++.+..
T Consensus       347 V~~~~~  352 (454)
T 3zrh_A          347 VAMEND  352 (454)
T ss_dssp             EEBCCC
T ss_pred             eecccc
Confidence            998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	1e-11

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 227 FVRQQIVAQLKSNPDIYEGYVP---MAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFV 283
           F+R    A +++  D +  ++            ++       DH+ + A +    + + V
Sbjct: 128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQV 187

Query: 284 ITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPA 322
               +    +      E +   +YL +    HYN +Y A
Sbjct: 188 EYVDEMDTALNHHVFPEAATPSVYLLY-KTSHYNILYAA 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.83

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.3e-21  Score=173.18  Aligned_cols=96  Identities=19%  Similarity=0.298  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhcCcccccccCC--CcHHHHHHh-hccCCCCCchHHHHHHHHHhCCcEEEEEcCCCceEEEecCCCCCCC
Q 019511          227 FVRQQIVAQLKSNPDIYEGYVP--MAYGDYLEK-MSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSI  303 (340)
Q Consensus       227 ~LR~~vV~yL~~n~d~y~~fv~--~~~~eYl~k-Msk~gtWGg~iELqA~A~lf~v~I~V~ts~~~t~~I~i~P~~~~~~  303 (340)
                      .+|..++.||++|++.|.+|+.  +++++||.+ |.+.++|||++||+|+|++|+++|.|+..++....+..........
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~  207 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT  207 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence            4799999999999999999995  579999986 8999999999999999999999999998876554332222234456


Q ss_pred             CeEEEEeCCCCeeeeeecCC
Q 019511          304 RVIYLSFWAEVHYNSIYPAG  323 (340)
Q Consensus       304 ~~I~Lsy~~~~HYdSV~~~~  323 (340)
                      ++|+|.|. +.|||.|+|.+
T Consensus       208 ~~I~Lly~-pgHYdiLY~~~  226 (228)
T d1tffa_         208 PSVYLLYK-TSHYNILYAAD  226 (228)
T ss_dssp             CSEEEEEE-TTEEEEEEECC
T ss_pred             CEEEEEeC-CCCcccCccCC
Confidence            78999994 68999999875