Citrus Sinensis ID: 019512

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEPRDRP
cccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHccccccEEHHcHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHccccccEEHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccc
cccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccc
mkglfkskprtpvdiVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSIlygnsesepvSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFfdyiqlpnfdIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFaanqnkppdIVSILVANRSKLLRLFADfktdkedeQFEADKAQVVKEIagleprdrp
mkglfkskprtpvdivrqtrdliiyanrsadvreskredKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLgdilldrsnsvvmtryvssrenLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFktdkedeqfeadkAQVVkeiagleprdrp
MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEPRDRP
*************DIVRQTRDLIIYAN****************LCKNIRELKSILYGN*****VSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFK****************************
MKGLF**KPRTPVDIVRQTRDLII*******************LCKNIRELKSILY******PVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVKEI**LE*****
MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEPRDRP
********PRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEP****
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MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEPRDRP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query340 2.2.26 [Sep-21-2011]
Q9FGK3343 Putative MO25-like protei yes no 0.994 0.985 0.844 1e-172
Q9M0M4343 Putative MO25-like protei no no 0.994 0.985 0.800 1e-160
Q9ZQ77348 MO25-like protein At2g034 no no 0.982 0.959 0.662 1e-131
Q9H9S4337 Calcium-binding protein 3 yes no 0.958 0.967 0.434 5e-75
Q9DB16337 Calcium-binding protein 3 yes no 0.958 0.967 0.428 2e-74
Q06138341 Calcium-binding protein 3 no no 0.967 0.964 0.442 4e-74
Q9Y376341 Calcium-binding protein 3 no no 0.973 0.970 0.442 4e-74
Q29RI6341 Calcium-binding protein 3 no no 0.973 0.970 0.442 4e-74
O18211338 MO25-like protein 2 OS=Ca no no 0.979 0.985 0.437 3e-70
P91891339 Protein Mo25 OS=Drosophil yes no 0.967 0.970 0.436 5e-68
>sp|Q9FGK3|MO25N_ARATH Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1 Back     alignment and function desciption
 Score =  602 bits (1553), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/341 (84%), Positives = 322/341 (94%), Gaps = 3/341 (0%)

Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSA---DVRESKREDKMAELCKNIRELKSILYG 57
           MKGLFKSKPRTP D+VRQTRDL+++++RS    D+R+SKR++KMAEL +NIR++KSILYG
Sbjct: 1   MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYG 60

Query: 58  NSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIA 117
           NSE+EPV+EACAQLT EFF+E+TLRLLITCLPKLNLE RKDATQVVANLQRQQV+S+LIA
Sbjct: 61  NSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIA 120

Query: 118 SDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLP 177
           SDYLEANIDL+D+LI G+ENTDMALHYGAM RECIRHQ VA+YVLES H+KKFFDYIQLP
Sbjct: 121 SDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLP 180

Query: 178 NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGD 237
           NFDIAADAAATFKELLTRHKSTVAEFL+KN DWFFA+YNSKLLESSNYITRRQA+KLLGD
Sbjct: 181 NFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGD 240

Query: 238 ILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSIL 297
           ILLDRSNS VMT+YVSSR+NLRILMNLLRESSKSIQIEAFHVFKLFAANQNKP DIV+IL
Sbjct: 241 ILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNIL 300

Query: 298 VANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEPRD 338
           VANRSKLLRL AD K DKEDE+FEADK+QV++EIA LEPRD
Sbjct: 301 VANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRD 341

Arabidopsis thaliana (taxid: 3702)
>sp|Q9M0M4|MO25M_ARATH Putative MO25-like protein At4g17270 OS=Arabidopsis thaliana GN=At4g17270 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQ77|MO25L_ARATH MO25-like protein At2g03410 OS=Arabidopsis thaliana GN=At2g03410 PE=2 SV=1 Back     alignment and function description
>sp|Q9H9S4|CB39L_HUMAN Calcium-binding protein 39-like OS=Homo sapiens GN=CAB39L PE=1 SV=3 Back     alignment and function description
>sp|Q9DB16|CB39L_MOUSE Calcium-binding protein 39-like OS=Mus musculus GN=Cab39l PE=1 SV=3 Back     alignment and function description
>sp|Q06138|CAB39_MOUSE Calcium-binding protein 39 OS=Mus musculus GN=Cab39 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y376|CAB39_HUMAN Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1 Back     alignment and function description
>sp|Q29RI6|CAB39_BOVIN Calcium-binding protein 39 OS=Bos taurus GN=CAB39 PE=2 SV=1 Back     alignment and function description
>sp|O18211|MO25M_CAEEL MO25-like protein 2 OS=Caenorhabditis elegans GN=mop-25.2 PE=3 SV=1 Back     alignment and function description
>sp|P91891|MO25_DROME Protein Mo25 OS=Drosophila melanogaster GN=Mo25 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
225469268340 PREDICTED: putative MO25-like protein At 1.0 1.0 0.914 0.0
255581605 445 Calcium-binding protein, putative [Ricin 0.997 0.761 0.903 1e-180
449443544340 PREDICTED: putative MO25-like protein At 0.991 0.991 0.884 1e-175
224086468339 predicted protein [Populus trichocarpa] 0.994 0.997 0.882 1e-174
297790907343 hypothetical protein ARALYDRAFT_916635 [ 0.994 0.985 0.859 1e-172
240256410343 putative MO25-like protein [Arabidopsis 0.994 0.985 0.844 1e-170
356555740334 PREDICTED: putative MO25-like protein At 0.982 1.0 0.862 1e-168
217074054337 unknown [Medicago truncatula] 0.985 0.994 0.860 1e-168
357447933337 hypothetical protein MTR_2g026050 [Medic 0.985 0.994 0.860 1e-168
363807646334 uncharacterized protein LOC100797189 [Gl 0.982 1.0 0.853 1e-167
>gi|225469268|ref|XP_002267661.1| PREDICTED: putative MO25-like protein At5g47540 [Vitis vinifera] gi|302141642|emb|CBI18773.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/340 (91%), Positives = 331/340 (97%)

Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSE 60
           MKGLFKSKPRTPV++VRQTRDL+IYANRS+D RESKRE+KM+EL K IRELKSILYGNSE
Sbjct: 1   MKGLFKSKPRTPVEVVRQTRDLLIYANRSSDTRESKREEKMSELSKLIRELKSILYGNSE 60

Query: 61  SEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDY 120
           +EP +EAC QLT EFF+ENTLRLLITCLPKLNLE RKDATQVVANLQRQQVHS+LIASDY
Sbjct: 61  AEPQAEACCQLTQEFFKENTLRLLITCLPKLNLETRKDATQVVANLQRQQVHSRLIASDY 120

Query: 121 LEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFD 180
           LEANIDL+D+LI+GY+NTDMALHYGAMLRECIRHQ+VARYVLES HMKKFFDYIQLPNFD
Sbjct: 121 LEANIDLMDVLISGYDNTDMALHYGAMLRECIRHQTVARYVLESAHMKKFFDYIQLPNFD 180

Query: 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL 240
           IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES+NYITRRQAVKLLGDILL
Sbjct: 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESTNYITRRQAVKLLGDILL 240

Query: 241 DRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVAN 300
           DRSNSVVMTRYVSSR+NLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVAN
Sbjct: 241 DRSNSVVMTRYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVAN 300

Query: 301 RSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEPRDRP 340
           +SKLLRLFADFKT+KEDEQFEADKAQVV+EIA LEPRDRP
Sbjct: 301 KSKLLRLFADFKTEKEDEQFEADKAQVVREIAALEPRDRP 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255581605|ref|XP_002531607.1| Calcium-binding protein, putative [Ricinus communis] gi|223528774|gb|EEF30782.1| Calcium-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449443544|ref|XP_004139537.1| PREDICTED: putative MO25-like protein At5g47540-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224086468|ref|XP_002307894.1| predicted protein [Populus trichocarpa] gi|222853870|gb|EEE91417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297790907|ref|XP_002863338.1| hypothetical protein ARALYDRAFT_916635 [Arabidopsis lyrata subsp. lyrata] gi|297309173|gb|EFH39597.1| hypothetical protein ARALYDRAFT_916635 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240256410|ref|NP_199565.4| putative MO25-like protein [Arabidopsis thaliana] gi|15214076|sp|Q9FGK3.1|MO25N_ARATH RecName: Full=Putative MO25-like protein At5g47540 gi|16226301|gb|AAL16128.1|AF428296_1 AT5g47540/MNJ7_13 [Arabidopsis thaliana] gi|9758782|dbj|BAB09080.1| unnamed protein product [Arabidopsis thaliana] gi|193211497|gb|ACF16168.1| At5g47540 [Arabidopsis thaliana] gi|332008147|gb|AED95530.1| putative MO25-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356555740|ref|XP_003546188.1| PREDICTED: putative MO25-like protein At5g47540-like [Glycine max] Back     alignment and taxonomy information
>gi|217074054|gb|ACJ85387.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357447933|ref|XP_003594242.1| hypothetical protein MTR_2g026050 [Medicago truncatula] gi|355483290|gb|AES64493.1| hypothetical protein MTR_2g026050 [Medicago truncatula] Back     alignment and taxonomy information
>gi|363807646|ref|NP_001241904.1| uncharacterized protein LOC100797189 [Glycine max] gi|255635566|gb|ACU18133.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query340
TAIR|locus:2168958343 AT5G47540 [Arabidopsis thalian 0.994 0.985 0.844 8.5e-152
TAIR|locus:2130774343 AT4G17270 [Arabidopsis thalian 0.994 0.985 0.800 2.9e-142
TAIR|locus:2063830348 AT2G03410 [Arabidopsis thalian 0.994 0.971 0.657 1.1e-117
ZFIN|ZDB-GENE-040625-158341 cab39 "calcium binding protein 0.976 0.973 0.443 1.3e-75
UNIPROTKB|Q29RI6341 CAB39 "Calcium-binding protein 0.967 0.964 0.442 2.7e-75
UNIPROTKB|E2R8W7341 CAB39 "Uncharacterized protein 0.967 0.964 0.442 2.7e-75
UNIPROTKB|Q9Y376341 CAB39 "Calcium-binding protein 0.967 0.964 0.442 2.7e-75
RGD|1306390341 Cab39 "calcium binding protein 0.967 0.964 0.442 2.7e-75
MGI|MGI:107438341 Cab39 "calcium binding protein 0.967 0.964 0.442 3.5e-75
ZFIN|ZDB-GENE-041114-204334 cab39l "calcium binding protei 0.958 0.976 0.458 9.3e-75
TAIR|locus:2168958 AT5G47540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1481 (526.4 bits), Expect = 8.5e-152, P = 8.5e-152
 Identities = 288/341 (84%), Positives = 322/341 (94%)

Query:     1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSA---DVRESKREDKMAELCKNIRELKSILYG 57
             MKGLFKSKPRTP D+VRQTRDL+++++RS    D+R+SKR++KMAEL +NIR++KSILYG
Sbjct:     1 MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYG 60

Query:    58 NSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIA 117
             NSE+EPV+EACAQLT EFF+E+TLRLLITCLPKLNLE RKDATQVVANLQRQQV+S+LIA
Sbjct:    61 NSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIA 120

Query:   118 SDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLP 177
             SDYLEANIDL+D+LI G+ENTDMALHYGAM RECIRHQ VA+YVLES H+KKFFDYIQLP
Sbjct:   121 SDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLP 180

Query:   178 NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGD 237
             NFDIAADAAATFKELLTRHKSTVAEFL+KN DWFFA+YNSKLLESSNYITRRQA+KLLGD
Sbjct:   181 NFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGD 240

Query:   238 ILLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSIL 297
             ILLDRSNS VMT+YVSSR+NLRILMNLLRESSKSIQIEAFHVFKLFAANQNKP DIV+IL
Sbjct:   241 ILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNIL 300

Query:   298 VANRSKLLRLFADFKTDKEDEQFEADKAQVVKEIAGLEPRD 338
             VANRSKLLRL AD K DKEDE+FEADK+QV++EIA LEPRD
Sbjct:   301 VANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALEPRD 341
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2130774 AT4G17270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063830 AT2G03410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-158 cab39 "calcium binding protein 39" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RI6 CAB39 "Calcium-binding protein 39" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8W7 CAB39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y376 CAB39 "Calcium-binding protein 39" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306390 Cab39 "calcium binding protein 39" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107438 Cab39 "calcium binding protein 39" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-204 cab39l "calcium binding protein 39-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGK3MO25N_ARATHNo assigned EC number0.84450.99410.9854yesno
Q9P7Q8PMO25_SCHPONo assigned EC number0.41490.96470.9969yesno
Q9DB16CB39L_MOUSENo assigned EC number0.42810.95880.9673yesno
Q9M0M4MO25M_ARATHNo assigned EC number0.80050.99410.9854nono
Q9H9S4CB39L_HUMANNo assigned EC number0.43410.95880.9673yesno
P91891MO25_DROMENo assigned EC number0.43620.96760.9705yesno
O60032HYMA_EMENINo assigned EC number0.34920.94410.8359yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00012467001
SubName- Full=Chromosome undetermined scaffold_383, whole genome shotgun sequence; (340 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
pfam08569334 pfam08569, Mo25, Mo25-like 1e-142
>gnl|CDD|219909 pfam08569, Mo25, Mo25-like Back     alignment and domain information 
 Score =  406 bits (1045), Expect = e-142
 Identities = 164/338 (48%), Positives = 229/338 (67%), Gaps = 6/338 (1%)

Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSE 60
           M  LFK  P+TP D+VR  +D +    +   +     E    E+ KN+ +LK IL G+++
Sbjct: 1   MPFLFKKSPKTPSDLVRSLKDQL---LKLDSLSSDNAEKAQEEVSKNLSQLKEILVGDTD 57

Query: 61  SEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLI-ASD 119
           +EP  E  AQL  E + E+ L LLI  L KL+ E RKD   + +N+ R+ + +      D
Sbjct: 58  AEPTQEQIAQLAQEMYSEDLLYLLIDNLHKLDFETRKDVALIFSNILRRSIDNNSRPTVD 117

Query: 120 YLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNF 179
           YL A+ ++L +L+ GYE +++AL  G MLRECI+H+++A+ +L S    KFF Y+QL  F
Sbjct: 118 YLVAHPEILSLLLKGYETSEIALTCGDMLRECIKHEALAKIILYSPQFWKFFKYVQLSTF 177

Query: 180 DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239
           +IA DA +TFK+LLT HK  VAEFL  NYD FF+ +N KLL+S+NY+T+RQ++KLLG++L
Sbjct: 178 EIATDAFSTFKDLLTTHKKLVAEFLLNNYDRFFSMFN-KLLQSTNYVTKRQSLKLLGELL 236

Query: 240 LDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVA 299
           LDR+NS VMT+Y+SS ENL+++MNLLR+ SK+IQ EAFHVFK+F AN NK   I  ILV 
Sbjct: 237 LDRANSKVMTKYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKSKPIQDILVK 296

Query: 300 NRSKLLRLFADFKTDK-EDEQFEADKAQVVKEIAGLEP 336
           NR KLL    DF TD+ +DEQF  +K  ++K+I  L P
Sbjct: 297 NRDKLLEFLEDFSTDRTDDEQFLDEKEFIIKQIESLPP 334

Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner. Length = 334

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 340
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 100.0
KOG1566342 consensus Conserved protein Mo25 [Function unknown 100.0
KOG1566342 consensus Conserved protein Mo25 [Function unknown 91.99
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 88.67
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 86.66
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 84.05
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 83.78
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 83.73
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 82.98
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 82.88
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 81.73
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 81.45
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information 
Probab=100.00  E-value=2.3e-127  Score=934.94  Aligned_cols=332  Identities=58%  Similarity=0.924  Sum_probs=293.6

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhch
Q 019512            1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT   80 (340)
Q Consensus         1 M~~lF~~~~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl   80 (340)
                      |+||||++||||+|+||+++|+|.+|+ +  ..++++++..|||+|+|++||+||+|++|++|+||+|+|||+|+|++|+
T Consensus         1 M~FlF~k~~KtP~ElVr~l~e~L~~L~-~--~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl   77 (335)
T PF08569_consen    1 MSFLFKKKPKTPAELVRSLREALEKLD-S--KSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL   77 (335)
T ss_dssp             -----------HHHHHHHHHHHHHHHH-S--S-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHhc-c--ccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence            999999999999999999999999998 2  2456666667999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCcc-chhHHhhhc-HhHHHHHHHhccCchhhhhHHHHHHHHHhHHHHH
Q 019512           81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKL-IASDYLEAN-IDLLDILIAGYENTDMALHYGAMLRECIRHQSVA  158 (340)
Q Consensus        81 l~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~-p~v~Yl~~~-peil~~L~~gY~~~dial~~G~mLRecik~e~la  158 (340)
                      +..||.+|+.||||+|||+++||++++|+++|+++ |+|+||++| |||+++|++||++||+|++||+|||||+|||++|
T Consensus        78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~  157 (335)
T PF08569_consen   78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA  157 (335)
T ss_dssp             HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999 999999999 9999999999999999999999999999999999


Q ss_pred             HHHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 019512          159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI  238 (340)
Q Consensus       159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~el  238 (340)
                      ++||++++||+||+|++.++||||||||+||+|+||+||++||+||.+|||+||+.|| +||+|+|||||||||||||||
T Consensus       158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el  236 (335)
T PF08569_consen  158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL  236 (335)
T ss_dssp             HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             hccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCC-cc
Q 019512          239 LLDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-ED  317 (340)
Q Consensus       239 Lldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~-~D  317 (340)
                      |+||+|++||+|||+||+|||+||+||+|+|||||+|||||||||||||+||+||++||.+||+|||+||.+|++|+ +|
T Consensus       237 lldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D  316 (335)
T PF08569_consen  237 LLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDD  316 (335)
T ss_dssp             HHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-
T ss_pred             HHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             cchHHHHHHHHHHHhcCCC
Q 019512          318 EQFEADKAQVVKEIAGLEP  336 (340)
Q Consensus       318 ~qF~dEK~~li~~I~~L~~  336 (340)
                      +||.|||++||++|++|||
T Consensus       317 ~qf~~EK~~li~~i~~L~~  335 (335)
T PF08569_consen  317 EQFEDEKAYLIKQIESLPP  335 (335)
T ss_dssp             CHHHHHHHHHHHHHHT---
T ss_pred             ccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999986

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
3zhp_A340 Human Mst3 (stk24) In Complex With Mo25beta Length 3e-76
3gni_A341 Structure Of Strad And Mo25 Length = 341 3e-75
1upk_A341 Crystal Structure Of Mo25 In Complex With A C-Termi 1e-66
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta Length = 340 Back     alignment and structure 
Iteration: 1

 Score =  281 bits (720), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 146/337 (43%), Positives = 223/337 (66%), Gaps = 8/337 (2%)
Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNS 59
           M  LF    + P +IV+  +D     N +   ++ K+ DK +E + K+++ +K IL G +
Sbjct: 6   MLPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTN 60
Query: 60  ESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASD 119
           E EP +EA AQL  E +    L  LI  L  ++ E +KD TQ+  N+ R+Q+ ++    +
Sbjct: 61  EKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVE 120
Query: 120 YLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNF 179
           Y+ A+  +L +L+ GYE   +AL  G MLRECIRH+ +A+ +L S   + FF Y++L  F
Sbjct: 121 YISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTF 180
Query: 180 DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239
           DIA+DA ATFK+LLTRHK  VA+FL +NYD  F +Y  KLL+S NY+T+RQ++KLLG+++
Sbjct: 181 DIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTKRQSLKLLGELI 239
Query: 240 LDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVA 299
           LDR N  +MT+Y+S  ENL+++MNLLR+ S +IQ EAFHVFK+F A+ +K   IV IL+ 
Sbjct: 240 LDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLK 299
Query: 300 NRSKLLRLFADFKTDK-EDEQFEADKAQVVKEIAGLE 335
           N+ KL+   + F+ ++ +DEQF  +K  ++K+I  L+
Sbjct: 300 NQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLK 336
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25 Length = 341 Back     alignment and structure
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal Peptide Of Strad Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query340
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 1e-149
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Length = 341 Back     alignment and structure
 Score =  422 bits (1086), Expect = e-149
 Identities = 148/341 (43%), Positives = 225/341 (65%), Gaps = 3/341 (0%)

Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSE 60
           M   F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E
Sbjct: 1   MPFPFGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNE 59

Query: 61  SEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDY 120
            EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y
Sbjct: 60  KEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEY 119

Query: 121 LEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFD 180
           +    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FD
Sbjct: 120 ICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFD 179

Query: 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL 240
           IA+DA ATFK+LLTRHK   AEFL ++YD FF+EY  KLL S NY+T+RQ++KLLG++LL
Sbjct: 180 IASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLL 238

Query: 241 DRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVAN 300
           DR N  +MT+Y+S  ENL+++MNLLR+ S++IQ EAFHVFK+F AN NK   I+ IL+ N
Sbjct: 239 DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN 298

Query: 301 RSKLLRLFADFKTDK-EDEQFEADKAQVVKEIAGLEPRDRP 340
           ++KL+   + F+ D+ EDEQF  +K  +VK+I  L+   + 
Sbjct: 299 QAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQ 339
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 100.0
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.27
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.84
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.72
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.08
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.08
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 95.92
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 94.34
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 94.23
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 94.03
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 93.98
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 93.84
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 93.65
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 92.65
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 92.6
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 91.08
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 91.04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 90.5
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 90.13
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 89.73
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 88.86
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 88.84
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 88.2
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 87.53
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 87.48
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 87.17
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 86.34
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 85.74
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 85.34
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 85.04
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 85.03
1qgr_A 876 Protein (importin beta subunit); transport recepto 83.2
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 81.62
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
Probab=100.00  E-value=9.4e-132  Score=961.39  Aligned_cols=333  Identities=44%  Similarity=0.773  Sum_probs=309.0

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhhccCCchhhhhHHHH-HHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhc
Q 019512            1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN   79 (340)
Q Consensus         1 M~~lF~~~~KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~-eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d   79 (340)
                      |+  ||++||||+|+||+++|+|.+|+.++  ++++.++|+ +||+|+|++||.||||++|++|+||+|+|||+|+|++|
T Consensus         3 m~--F~~~~ktP~elVr~l~d~l~~l~~~~--~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d   78 (341)
T 1upk_A            3 FP--FGKSHKSPADIVKNLKESMAVLEKQD--ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG   78 (341)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred             CC--CCCCCCCHHHHHHHHHHHHHHHhccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence            56  99999999999999999999999643  234544555 89999999999999999999999999999999999999


Q ss_pred             hHHHHHhhCCCCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhhhHHHHHHHHHhHHHHHH
Q 019512           80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVAR  159 (340)
Q Consensus        80 ll~~Li~~l~~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~  159 (340)
                      +|++||.+|++||||+|||+++||++++|+++|+++|+|+||++||||+++|++||++||+|++||+|||||+|||.+|+
T Consensus        79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~  158 (341)
T 1upk_A           79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK  158 (341)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcchhhHhhhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 019512          160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL  239 (340)
Q Consensus       160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elL  239 (340)
                      +||+|++||+||+|++.|+||||||||+||||+||+||++||+||++||||||++|| +||+|+||||||||||||||||
T Consensus       159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelL  237 (341)
T 1upk_A          159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELL  237 (341)
T ss_dssp             HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 8999999999999999999999


Q ss_pred             ccccchHHHHHhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCC-ccc
Q 019512          240 LDRSNSVVMTRYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDE  318 (340)
Q Consensus       240 ldr~N~~vm~~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~-~D~  318 (340)
                      +||+|++||++||+|++|||+||+||+|+|||||+|||||||||||||+||+||.+||.+||+|||+||.+|++|+ +|+
T Consensus       238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDe  317 (341)
T 1upk_A          238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDE  317 (341)
T ss_dssp             HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCS
T ss_pred             hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             chHHHHHHHHHHHhcCCCCC
Q 019512          319 QFEADKAQVVKEIAGLEPRD  338 (340)
Q Consensus       319 qF~dEK~~li~~I~~L~~~~  338 (340)
                      ||.|||+|||++|++||++.
T Consensus       318 qF~dEK~~lI~~I~~L~~~~  337 (341)
T 1upk_A          318 QFNDEKTYLVKQIRDLKRPA  337 (341)
T ss_dssp             HHHHHHHHHHHHHHTCCCCC
T ss_pred             hHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999998654
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 340
d1upka_330 a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) 1e-168
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 330 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  468 bits (1206), Expect = e-168
 Identities = 146/329 (44%), Positives = 222/329 (67%), Gaps = 3/329 (0%)

Query: 10  RTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACA 69
           ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA A
Sbjct: 1   KSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVA 59

Query: 70  QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLD 129
           QL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L 
Sbjct: 60  QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 119

Query: 130 ILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATF 189
           +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATF
Sbjct: 120 MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATF 179

Query: 190 KELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMT 249
           K+LLTRHK   AEFL ++YD FF+EY  KLL S NY+T+RQ++KLLG++LLDR N  +MT
Sbjct: 180 KDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 238

Query: 250 RYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFA 309
           +Y+S  ENL+++MNLLR+ S++IQ EAFHVFK+F AN NK   I+ IL+ N++KL+   +
Sbjct: 239 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS 298

Query: 310 DFKTDK-EDEQFEADKAQVVKEIAGLEPR 337
            F+ D+ EDEQF  +K  +VK+I  L+  
Sbjct: 299 KFQNDRTEDEQFNDEKTYLVKQIRDLKRP 327

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query340
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.67
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.6
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.29
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 95.77
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.87
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 94.24
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 90.76
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 86.57
d1b3ua_588 Constant regulatory domain of protein phosphatase 86.51
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 81.58
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-130  Score=939.54  Aligned_cols=327  Identities=44%  Similarity=0.776  Sum_probs=312.2

Q ss_pred             CChHHHHHHHHHHHHHhhccCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCchHHHHHHHHHHHhhchHHHHHhhCC
Q 019512           10 RTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLP   89 (340)
Q Consensus        10 KtP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eEisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~   89 (340)
                      |||+|+||+++|+|.+|+.++. +++|+++++|||+|+|++||.||||++|+||+||+|+||++|+|++|+|++||.+||
T Consensus         1 ktP~elVr~~~d~l~~l~~~~~-~~~k~ek~~ee~~K~l~~mK~iL~G~~e~ep~~e~~~qL~~e~~~~d~l~~Li~~L~   79 (330)
T d1upka_           1 KSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQ   79 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHHTGG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhChHHHHHHhCC
Confidence            7999999999999999997643 567777778999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhhhcHHHHHHHHhhhhccCccchhHHhhhcHhHHHHHHHhccCchhhhhHHHHHHHHHhHHHHHHHHhcchhhHh
Q 019512           90 KLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKK  169 (340)
Q Consensus        90 ~L~fE~rKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f~~  169 (340)
                      +||||+|||+++||++++|+++|+++|+|+||++||||+++|++||++||+|++||.|||||+|||++|++||++++||+
T Consensus        80 ~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~  159 (330)
T d1upka_          80 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYD  159 (330)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGH
T ss_pred             CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCChhhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccchHHHH
Q 019512          170 FFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMT  249 (340)
Q Consensus       170 fF~yv~~~~FdiasDAf~tfkellt~hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL~elLldr~N~~vm~  249 (340)
                      ||+|+++|+||||||||+||+|+||+||++||+||++||||||.+|| +||+|+||||||||||||||||+||+|++||+
T Consensus       160 fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~-~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~  238 (330)
T d1upka_         160 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLLDRHNFTIMT  238 (330)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             HhhcChhhHHHHHHHhccCccccchhhhhhhhhhhcCCCCChhHHHHHHHhHHHHHHHHhcCCCCC-cccchHHHHHHHH
Q 019512          250 RYVSSRENLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPPDIVSILVANRSKLLRLFADFKTDK-EDEQFEADKAQVV  328 (340)
Q Consensus       250 ~Yi~~~~NLkliM~lL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLi~fl~~f~~d~-~D~qF~dEK~~li  328 (340)
                      +||+|++|||+||+||+|+|||||+|||||||||||||+||+||++||.+||+||++||.+|++|+ +|+||.+||+|||
T Consensus       239 ~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~~~DeqF~~EK~~lI  318 (330)
T d1upka_         239 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLV  318 (330)
T ss_dssp             HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998 9999999999999


Q ss_pred             HHHhcCCCCC
Q 019512          329 KEIAGLEPRD  338 (340)
Q Consensus       329 ~~I~~L~~~~  338 (340)
                      ++|++|||+.
T Consensus       319 ~~I~~L~~~~  328 (330)
T d1upka_         319 KQIRDLKRPA  328 (330)
T ss_dssp             HHHHTCCCCC
T ss_pred             HHHHhCCCCC
Confidence            9999998875
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure