Citrus Sinensis ID: 019521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MLKHAVSQVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHccccccccccccccccccccEEEEEEEEEEEEccccccccccccHHHHccccccccEEEEEEEccccccccccccEEEEcccccHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHHHcccccccccccEEEEEccccccccHHHHHHHHcHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHcccEcccHHHHHHHccEcccEEEEccccccccccEEEEEEEccEEEcccccEEEcHHHHHHHccccccccEEEEEEEccccccccccccEEEEccHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccHHHHHHHHHHcccEEcccccEEEEEEcccccccccHHHHHHHcHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccEEEEEcc
Coil and Loop (DISEMBL)
MLKHAVSQVQHKEMknylpdihknttevpIKLRTFVELTMdvtsasprRYFFEVMSYFATAEHEKERLqyfaspegrddlyKYNQKERRTVLEVledfpsvqmpidwlvqlvpplktrafsisssplahpnqvHLTVSVVSwttpykrkrtglcsvwlagldpqqgiyipawfqkgslprpppsvpliligpgtgcapfrgFVEERaiqsssgpaapiifffgcrneddFLYRELWLSHslndgvfseakgggfyvafsrkqpqKVYVQHKMLEQSQRIWNLLLSKASIYVAgsatkmpsdvWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Flexible Loop (DISEMBL)
MLKHAVSQVQHKemknylpdihknTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLqyfaspegrddlYKYNQKERRTVLEVledfpsvqmPIDWLVQLVPPLKTRAFSISssplahpnqvhLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSkegeasrdSAANWLKALQRAGRYHVEAWS
Low Complexity Region (SEG)
MLKHAVSQVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Disordered region (IsUnstruct)
****************YLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR*PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV************NWLKALQRAGRY******
Disordered Region (DISOPRED)
***HAVS****************NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG**PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Disordered Region (DISEMBL)
**********HKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Disordered Region (DISPRO)
MLKHAVSQVQH*EMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKHAVSQVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q6NPS8	623	NADPH-dependent diflavin	yes	no	0.926	0.505	0.731	1e-141
Q6PFP6	595	NADPH-dependent diflavin	yes	no	0.897	0.512	0.419	1e-63
Q9UHB4	597	NADPH-dependent diflavin	yes	no	0.911	0.519	0.407	7e-61
Q54JL0	633	NADPH-dependent diflavin	yes	no	0.814	0.437	0.420	1e-59
Q6NRG5	600	NADPH-dependent diflavin	N/A	no	0.873	0.495	0.372	8e-57
A2AI05	598	NADPH-dependent diflavin	no	no	0.879	0.5	0.393	4e-55
Q1JPJ0	577	NADPH-dependent diflavin	yes	no	0.817	0.481	0.404	2e-51
Q3SYT8	678	NADPH--cytochrome P450 re	no	no	0.902	0.452	0.354	3e-51
Q05001	714	NADPH--cytochrome P450 re	N/A	no	0.894	0.425	0.366	6e-51
P37039	678	NADPH--cytochrome P450 re	no	no	0.9	0.451	0.359	8e-50

>sp|Q6NPS8|ATR3_ARATH NADPH-dependent diflavin oxidoreductase ATR3 OS=Arabidopsis thaliana GN=ATR3 PE=1 SV=1

 Score =  501 bits (1291), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 232/317 (73%), Positives = 271/317 (85%), Gaps = 2/317 (0%)

Query: 26  TEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQ 85
           T++PIKL+TFVELTMDVTSASPRRYFFE+MS++ATAEHEKERLQYFASPEGRDDLY YNQ
Sbjct: 307 TQIPIKLKTFVELTMDVTSASPRRYFFEIMSFYATAEHEKERLQYFASPEGRDDLYNYNQ 366

Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           KERR++LEVLEDFPSVQ+P DWLVQLVPPLK RAFSISSSPLAHP  VHLTVS+VSW TP
Sbjct: 367 KERRSILEVLEDFPSVQIPFDWLVQLVPPLKPRAFSISSSPLAHPAAVHLTVSIVSWITP 426

Query: 146 YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEE 205
           YKR R GLCS WLA L P+Q + IP WF KGSLP P  S+PLIL+GPGTGCAPFRGF+ E
Sbjct: 427 YKRTRKGLCSSWLASLAPEQEVNIPVWFHKGSLPAPSQSLPLILVGPGTGCAPFRGFIAE 486

Query: 206 RAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 264
           RA+Q+ S P AP++FFFGCRN+D DFLYR+ W SH+   G+ SE KGGGFY AFSR QP+
Sbjct: 487 RAVQAQSSPVAPVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPK 546

Query: 265 KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKE-GEASRDSAAN 323
           KVYVQHK+ E S+R+W+LL   A++YVAGS+TKMP DV S FE+IVS+E G  S++ A+ 
Sbjct: 547 KVYVQHKIREMSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETGGGSKEVASR 606

Query: 324 WLKALQRAGRYHVEAWS 340
           WLKAL++ GRY+VEAWS
Sbjct: 607 WLKALEKTGRYNVEAWS 623

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c, but not cytochrome P450 in vitro. Required for embryo development. May participate to the control of cell death through its interaction with the DRE2 homolog At5g18400.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: -

>sp|Q6PFP6|NDOR1_DANRE NADPH-dependent diflavin oxidoreductase 1 OS=Danio rerio GN=ndor1 PE=2 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/329 (41%), Positives = 198/329 (60%), Gaps = 24/329 (7%)

Query: 24  NTTEVPIKL------RTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 77
           ++TEVP +L      R  +E  +D+ SA PRR FFE+++ FAT E E+E+L  F+S  G+
Sbjct: 279 SSTEVPARLPQPCSIRFLLEHFLDI-SAVPRRSFFELLATFATDELEQEKLLEFSSAAGQ 337

Query: 78  DDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHL 135
           D L+ Y  + RRT LEVL DFP  + ++ I  L+ L P ++ R+FSI+SS L HPN++ +
Sbjct: 338 DTLHSYCNRPRRTALEVLTDFPHTTAELSIGRLLDLFPEIQPRSFSIASSLLEHPNRIQI 397

Query: 136 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRP-PPSVPLILIGPG 193
            ++VV + T   + R GLCS WLA LDP +G +Y+P W +KGSL  P  P  P+I++GPG
Sbjct: 398 LLAVVKYKTMLVKPRKGLCSSWLASLDPSKGDVYVPLWVKKGSLKFPQDPESPVIMVGPG 457

Query: 194 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 252
           TG APFR  ++ER  Q   G  A ++ FFGCR+E  DF     W           +A   
Sbjct: 458 TGVAPFRSAIQERVAQ---GKMANVL-FFGCRSESKDFYCGSEWQEK-------VQAGQM 506

Query: 253 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVS 311
               AFSR Q  KVYVQH++ EQ + +W+L+  K A  Y+AG+A +MP+ V    + +  
Sbjct: 507 ILVTAFSRDQEDKVYVQHRVKEQGKLLWDLIAKKNAFFYIAGNAKQMPTSVCDALKAVFQ 566

Query: 312 KEGEASRDSAANWLKALQRAGRYHVEAWS 340
           KEG  S + A   L  +++ GR+  E WS
Sbjct: 567 KEGGMSENQAQEMLDGMEKNGRFQSETWS 595

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q9UHB4|NDOR1_HUMAN NADPH-dependent diflavin oxidoreductase 1 OS=Homo sapiens GN=NDOR1 PE=1 SV=1

 Score =  234 bits (597), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 134/329 (40%), Positives = 191/329 (58%), Gaps = 19/329 (5%)

Query: 19  PDIHKNT-TEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 77
           PD+   T    P  +R  V   +D+ S  PRR FFE+++  +  E E+E+L  F+S +G+
Sbjct: 281 PDVSSPTRLPQPCSMRHLVSHYLDIASV-PRRSFFELLACLSLHELEREKLLEFSSAQGQ 339

Query: 78  DDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHL 135
           ++L++Y  + RRT+LEVL DFP  +  +P D+L+ L+P ++ RAFSI+SS L HP+++ +
Sbjct: 340 EELFEYCNRPRRTILEVLCDFPHTAAAIPPDYLLDLIPVIRPRAFSIASSLLTHPSRLQI 399

Query: 136 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRP-PPSVPLILIGPG 193
            V+VV + T  K  R GLCS WLA LDP QG + +P W + GSL  P  P  P+I++GPG
Sbjct: 400 LVAVVQFQTRLKEPRRGLCSSWLASLDPGQGPVRVPLWVRPGSLAFPETPDTPVIMVGPG 459

Query: 194 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 252
           TG APFR  ++ER  Q  +G       FFGCR  D DF +   W      D +       
Sbjct: 460 TGVAPFRAAIQERVAQGQTG----NFLFFGCRWRDQDFYWEAEWQELEKRDCL------- 508

Query: 253 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVS 311
               AFSR+Q QKVYVQH++ E    +W LL  + A  Y+AG+A  MP+DV      I  
Sbjct: 509 TLIPAFSREQEQKVYVQHRLRELGSLVWELLDRQGAYFYLAGNAKSMPADVSEALMSIFQ 568

Query: 312 KEGEASRDSAANWLKALQRAGRYHVEAWS 340
           +EG      AA +L  LQ+  R+  E W+
Sbjct: 569 EEGGLCSPDAAAYLARLQQTRRFQTETWA 597

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q54JL0|NDOR1_DICDI NADPH-dependent diflavin oxidoreductase 1 OS=Dictyostelium discoideum GN=redC PE=2 SV=1

 Score =  230 bits (586), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 124/295 (42%), Positives = 186/295 (63%), Gaps = 18/295 (6%)

Query: 27  EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQK 86
           ++PI +   V    D+   SPRRYFFE++S+F T   EKERL++F+S EG+DDL  YNQK
Sbjct: 287 KLPITIYDLVRCYFDIM-GSPRRYFFELLSHFVTNPIEKERLEFFSSTEGQDDLRTYNQK 345

Query: 87  ERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
           E+R  ++VL++FPS+++P ++L  L+PP+K R FSISSS L +PN +HLTV + ++TTP+
Sbjct: 346 EKRNYIDVLKEFPSIEIPFEYLFDLIPPIKPRPFSISSSSLLNPNTIHLTVGINTYTTPF 405

Query: 147 KRK-RTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPS--VPLILIGPGTGCAPFRGFV 203
           +R  RTGLCS + +         I   F K S  R P S  +P+I++GPGTGCA FR F+
Sbjct: 406 RRLFRTGLCSQYFSSFLNDNDNNIVPIFIKESGARLPKSNEIPIIMVGPGTGCAIFRSFM 465

Query: 204 EERAI----QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           +ER        ++      +F+FGCR+E  D+ YR+ + S+ L  G+ S+       VAF
Sbjct: 466 QERLYFKNNSDNNNKLGDALFYFGCRSESKDYYYRDEFESN-LEKGIISKLS-----VAF 519

Query: 259 SR--KQPQKVYVQHKMLEQSQRIWNLLLSKAS-IYVAGSATKMPSDVWSTFEEIV 310
           SR  K  +KVYVQ  +   S  IW+++ ++    Y++GS+ +MP DV  +   I+
Sbjct: 520 SRDGKDGKKVYVQQYIENDSDLIWDIINNRNGYFYISGSSGRMPKDVKQSLLTII 574

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q6NRG5|NDOR1_XENLA NADPH-dependent diflavin oxidoreductase 1 OS=Xenopus laevis GN=ndor1 PE=2 SV=1

 Score =  221 bits (562), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 117/314 (37%), Positives = 184/314 (58%), Gaps = 17/314 (5%)

Query: 32  LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTV 91
           ++  VE  +D+ S  PRR FF++  +F+  E E+E+L+ F+   G+++LY Y  + RRT+
Sbjct: 299 VQQLVERYLDICSI-PRRSFFQLFCHFSPDEMEREKLKEFSCAAGQEELYSYCNRPRRTI 357

Query: 92  LEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK 149
           LEVL DFP     +P  +L++L+P ++ RAFSI+SS  A PN + + ++VV + T     
Sbjct: 358 LEVLVDFPHTTRCIPATFLLELIPQIRPRAFSIASSMEALPNTIQILMAVVQYKTKLIEP 417

Query: 150 RTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAI 208
           R GLCS WLA L P     +P W +KGS+  P  P  P++++GPGTG APFR  ++ER  
Sbjct: 418 RRGLCSTWLASLPPHGTERVPIWVKKGSMKFPCDPDTPVVMVGPGTGVAPFRAAIQERVA 477

Query: 209 QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVY 267
               G       FFGCR +  DF + + W     N G  +       + AFSR Q  K+Y
Sbjct: 478 NGRPGNC----LFFGCRGKSKDFYFEKEWEDLG-NRGYLT------LFTAFSRDQEDKIY 526

Query: 268 VQHKMLEQSQRIWNLLLSKAS-IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLK 326
           VQH++ E S+ +W+L+ +K   +Y+AG+A  MP++V    + ++  EG  S   A  +L 
Sbjct: 527 VQHRIKENSKLLWDLIGTKQGYVYIAGNAKLMPNEVTDALKWVLQLEGGMSAPDAEQYLA 586

Query: 327 ALQRAGRYHVEAWS 340
           +++++ R+  E WS
Sbjct: 587 SMEKSCRFQSETWS 600

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|A2AI05|NDOR1_MOUSE NADPH-dependent diflavin oxidoreductase 1 OS=Mus musculus GN=Ndor1 PE=2 SV=1

 Score =  215 bits (548), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 126/320 (39%), Positives = 182/320 (56%), Gaps = 21/320 (6%)

Query: 29  PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
           P  +   V   +D+ S  PRR FFE+++  +    E+E+L   +S  G+++L++Y  + R
Sbjct: 292 PCTVWNLVSQYLDIASV-PRRSFFELLACLSQHALEREKLLELSSARGQEELWEYCSRPR 350

Query: 89  RTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
           RT+LEVL DFP     +P D+L+ L+P ++ RAFSI+SS LAHP ++ + V+VV + T  
Sbjct: 351 RTILEVLCDFPHTAGAIPPDYLLDLIPRIRPRAFSIASSLLAHPRRLQILVAVVKYQTRL 410

Query: 147 KRKRTGLCSVWLAGLDPQQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFV 203
           K  R GLCS WLA L+P Q   + +P W + GSL  P  P  P+I++G GTG APFR  +
Sbjct: 411 KEPRHGLCSSWLASLNPGQAGPVRVPLWVRPGSLVFPKTPDTPIIMVGAGTGVAPFRAAI 470

Query: 204 EERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG-GGFYVAFSRK 261
           +ER     +G       FFGCR  D DF ++  W           E KG      AFSR+
Sbjct: 471 QERVAHGQTGN----FLFFGCRQRDQDFYWQTEWQKL--------EQKGWLTLVTAFSRE 518

Query: 262 QPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 320
           Q QKVYVQH++ E    +W LL  + A  Y+AG+A  +P+DV      I  +EG  S   
Sbjct: 519 QEQKVYVQHRLRELGPLVWELLDGQGAYFYLAGNAKYLPTDVSEALMSIFQEEGRLSTAD 578

Query: 321 AANWLKALQRAGRYHVEAWS 340
           A+ +L  LQ+  R+  E W+
Sbjct: 579 ASAYLARLQQTLRFQTETWA 598

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q1JPJ0|NDOR1_BOVIN NADPH-dependent diflavin oxidoreductase 1 (Fragment) OS=Bos taurus GN=NDOR1 PE=2 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 119/294 (40%), Positives = 164/294 (55%), Gaps = 16/294 (5%)

Query: 29  PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
           P  +R  V   +D+ S  PRR FFE+++  +  E E+E+L+ F S  G+++L +Y  + R
Sbjct: 292 PCSVRRLVSQYLDIASV-PRRSFFELLACLSPHELEREKLREFGSARGQEELCEYCTRPR 350

Query: 89  RTVLEVLEDFPSVQMPIDWLVQLVPP--LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
           RT LEVL DFP     +     L     ++ RAFSI+SS  AHP+++H+ V+VV + T  
Sbjct: 351 RTALEVLCDFPHTAAAVPPDYLLDLLPLIRPRAFSIASSLRAHPSRLHILVAVVQYQTRL 410

Query: 147 KRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVE 204
           +  R GLCS WLA LDP QG + +P W + G L  P  P VP+I++GPGTG APFR  ++
Sbjct: 411 REPRRGLCSSWLASLDPAQGPVRVPLWVRSGGLTFPKTPDVPVIMVGPGTGVAPFRAAIQ 470

Query: 205 ERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 264
           ER  Q  +G     + FFGCR  D   Y E         G  +         AFSR+Q Q
Sbjct: 471 ERVAQGETG----NVLFFGCRRRDQDFYWEAEWEQLQARGCLT------LVTAFSREQEQ 520

Query: 265 KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 317
           KVYVQH++      +W LL    A  Y+AG+A  MP+DV  T   I  +EG  S
Sbjct: 521 KVYVQHRLRALGPLVWELLDGGGAHFYLAGNAKYMPADVCDTLLSIFREEGGLS 574

Oxidoreductase that catalyzes the NADP-dependent reduction of cytochrome c and one-electron acceptors, such as doxorubicin, potassium ferricyanide and menadione (in vitro).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: -

EC: .

EC: -

>sp|Q3SYT8|NCPR_BOVIN NADPH--cytochrome P450 reductase OS=Bos taurus GN=POR PE=2 SV=3

 Score =  202 bits (514), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 179/322 (55%), Gaps = 15/322 (4%)

Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFAT-AEHEKERLQYFASPEGRDDLYKYNQK 86
            P   RT +   +D+T+       +E+  Y +   EHE+ R    +S EG++   ++  +
Sbjct: 363 CPTSYRTALTYYLDITNPPRTNVLYELAQYASEPTEHEQLRKMASSSGEGKELYLRWVLE 422

Query: 87  ERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
            RR +L +L+D+PS++ PID L +L+P L+ R +SI+SS   HPN VH+    V + T  
Sbjct: 423 ARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYETKT 482

Query: 147 KRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRG 201
            R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF G
Sbjct: 483 GRINKGVATSWLRAKEPAGENGGRALVPMYVRKSQFRLPFKATTPVIMVGPGTGVAPFIG 542

Query: 202 FVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259
           F++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAFS
Sbjct: 543 FIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYRE-ELAGFHKDGALTQ-----LNVAFS 596

Query: 260 RKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           R+QPQKVYVQH + +  + +W L+    A IYV G A  M  DV +TF +IV+++G    
Sbjct: 597 REQPQKVYVQHLLKKDKEHLWKLIHEGGAHIYVCGDARNMARDVQNTFYDIVAEQGAMEH 656

Query: 319 DSAANWLKALQRAGRYHVEAWS 340
             A +++K L   GRY ++ WS
Sbjct: 657 AQAVDYVKKLMTKGRYSLDVWS 678

This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 4

>sp|Q05001|NCPR_CATRO NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1

 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 117/319 (36%), Positives = 179/319 (56%), Gaps = 15/319 (4%)

Query: 29  PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
           P  LRT +    D+ + +P++     ++ +A+  +E +RL+Y ASP G+D+  +     +
Sbjct: 403 PCTLRTALTRYADLLN-TPKKSALLALAAYASDPNEADRLKYLASPAGKDEYAQSLVANQ 461

Query: 89  RTVLEVLEDFPSVQMPID-WLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK 147
           R++LEV+ +FPS + P+  +   + P L+ R +SISSSP   P+++H+T ++V   TP  
Sbjct: 462 RSLLEVMAEFPSAKPPLGVFFAAIAPRLQPRFYSISSSPRMAPSRIHVTCALVYEKTPGG 521

Query: 148 RKRTGLCSVWLAGLDP----QQGIYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGF 202
           R   G+CS W+    P    +   + P + ++ +   P  P VP+I+IGPGTG APFRGF
Sbjct: 522 RIHKGVCSTWMKNAIPLEESRDCSWAPIFVRQSNFKLPADPKVPVIMIGPGTGLAPFRGF 581

Query: 203 VEER-AIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 260
           ++ER A++         +FFFGCRN   D++Y E  L+H L  G  SE       VAFSR
Sbjct: 582 LQERLALKEEGAELGTAVFFFGCRNRKMDYIY-EDELNHFLEIGALSE-----LLVAFSR 635

Query: 261 KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 320
           + P K YVQHKM E++  IW ++   A +YV G A  M  DV  T   I  ++G      
Sbjct: 636 EGPTKQYVQHKMAEKASDIWRMISDGAYVYVCGDAKGMARDVHRTLHTIAQEQGSMDSTQ 695

Query: 321 AANWLKALQRAGRYHVEAW 339
           A  ++K LQ  GRY  + W
Sbjct: 696 AEGFVKNLQMTGRYLRDVW 714

This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5.

Catharanthus roseus (taxid: 4058)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 4

>sp|P37039|NCPR_CAVPO NADPH--cytochrome P450 reductase OS=Cavia porcellus GN=POR PE=2 SV=2

 Score =  197 bits (502), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 116/323 (35%), Positives = 176/323 (54%), Gaps = 17/323 (5%)

Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E+L   AS   EG++    +  
Sbjct: 363 CPTTYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQEQLHKMASSSGEGKELYLTWVV 421

Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D+PS++ PID L +L+P L+ R +SI+SS   HPN VH+   VV + T 
Sbjct: 422 EARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETK 481

Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   DP  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 482 SGRINKGVATSWLQAKDPAGENGRRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGVAPFI 541

Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA +Q         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 542 GFIQERAWLQQQGKEVGETLLYYGCRRSDEDYLYRE-ELAQFHKDGTLTQ-----LNVAF 595

Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 317
           SR+Q QKVYVQH +    + +W L+    A IYV G A  M  DV +TF  I ++ G   
Sbjct: 596 SREQAQKVYVQHLLKRDQEHLWKLIHEDGAHIYVCGDARNMARDVQNTFCNIAAELGGME 655

Query: 318 RDSAANWLKALQRAGRYHVEAWS 340
              A +++K L   GRY ++ WS
Sbjct: 656 HTQAVDYVKKLMTKGRYSLDVWS 678

This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5.

Cavia porcellus (taxid: 10141)

EC: 1

EC: .

EC: 6

EC: .

EC: 2

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
449458325	629	PREDICTED: NADPH-dependent diflavin oxid	0.917	0.496	0.789	1e-151
449519236	622	PREDICTED: LOW QUALITY PROTEIN: NADPH-de	0.917	0.501	0.785	1e-150
225452009	631	PREDICTED: NADPH-dependent diflavin oxid	0.976	0.526	0.798	1e-148
359488269	636	PREDICTED: NADPH-dependent diflavin oxid	0.976	0.522	0.786	1e-146
356569080	617	PREDICTED: NADPH-dependent diflavin oxid	0.95	0.523	0.746	1e-145
296087289	632	unnamed protein product [Vitis vinifera]	0.976	0.525	0.787	1e-145
356569082	631	PREDICTED: NADPH-dependent diflavin oxid	0.95	0.511	0.722	1e-143
224077154	632	nadph-cytochrome P450 oxydoreductase [Po	0.920	0.495	0.796	1e-143
255580311	621	NADPH fad oxidoreductase, putative [Rici	0.932	0.510	0.786	1e-142
6041790	616	putative NADPH-ferrihemoprotein reductas	0.926	0.511	0.731	1e-139

>gi|449458325|ref|XP_004146898.1| PREDICTED: NADPH-dependent diflavin oxidoreductase ATR3-like [Cucumis sativus]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 247/313 (78%), Positives = 284/313 (90%), Gaps = 1/313 (0%)

Query: 29  PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
           P+KL+TF+ELTMD+ SASPRRYFFEVMSY+ATA HEKERLQYFASPEGRDDLY+YNQKER
Sbjct: 317 PVKLKTFIELTMDIASASPRRYFFEVMSYYATAPHEKERLQYFASPEGRDDLYQYNQKER 376

Query: 89  RTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR 148
           R+VLEVLEDFPSV+MP DWLVQLVPPLKTR+FSISSS LAHPNQVHLTV+VVSWTTPYKR
Sbjct: 377 RSVLEVLEDFPSVKMPFDWLVQLVPPLKTRSFSISSSALAHPNQVHLTVNVVSWTTPYKR 436

Query: 149 KRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAI 208
           KR+GLCS WLAGLDP+Q +++P WF KGSLP P PS+PLIL+GPGTGCAPFRGFVEER+I
Sbjct: 437 KRSGLCSSWLAGLDPEQSVHVPVWFHKGSLPAPSPSLPLILVGPGTGCAPFRGFVEERSI 496

Query: 209 QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVY 267
           +++S   AP++FFFGCRNED DFLYR+ WLSHS N GV SE KGGGFYVAFSR Q +KVY
Sbjct: 497 ENTSMATAPVLFFFGCRNEDNDFLYRDFWLSHSKNHGVLSEEKGGGFYVAFSRDQQRKVY 556

Query: 268 VQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA 327
           VQHKMLEQS++IWNLL   A++YVAGS+TKMP+DVWSTFEEIVSKE +  R+SA  WL+A
Sbjct: 557 VQHKMLEQSEKIWNLLREGAAVYVAGSSTKMPADVWSTFEEIVSKETQLPRESAVRWLRA 616

Query: 328 LQRAGRYHVEAWS 340
           L++AG+YHVEAWS
Sbjct: 617 LEKAGKYHVEAWS 629

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519236|ref|XP_004166641.1| PREDICTED: LOW QUALITY PROTEIN: NADPH-dependent diflavin oxidoreductase ATR3-like [Cucumis sativus]

 Score =  535 bits (1379), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 246/313 (78%), Positives = 283/313 (90%), Gaps = 1/313 (0%)

Query: 29  PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
           P+KL+TF+ELTMD+ SASPRRYFFEVMSY+ATA HEKERLQYFASPEGRDDLY+YNQKER
Sbjct: 310 PVKLKTFIELTMDIASASPRRYFFEVMSYYATAPHEKERLQYFASPEGRDDLYQYNQKER 369

Query: 89  RTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR 148
           R+VLEVLEDFPSV+MP DWLVQLVPPLKTR+FSISSS LAHPNQVHLTV+VVSWTTPYKR
Sbjct: 370 RSVLEVLEDFPSVKMPFDWLVQLVPPLKTRSFSISSSALAHPNQVHLTVNVVSWTTPYKR 429

Query: 149 KRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAI 208
           KR+GLCS WLAGLDP+Q +++P WF KGSLP P PS+PLIL+GPGTGCAPFRGFVEER+I
Sbjct: 430 KRSGLCSSWLAGLDPEQSVHVPVWFHKGSLPAPSPSLPLILVGPGTGCAPFRGFVEERSI 489

Query: 209 QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVY 267
           +++S   AP++FFFGCRNED DFLYR+ WLSHS N GV SE KGGGFYVAFSR Q +KVY
Sbjct: 490 ENTSMATAPVLFFFGCRNEDNDFLYRDFWLSHSKNHGVLSEEKGGGFYVAFSRDQQRKVY 549

Query: 268 VQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA 327
           VQHKMLEQS++IWNLL   A++YVAGS+TKMP+DVWSTFEEIVSKE +  R+SA  WL+A
Sbjct: 550 VQHKMLEQSEKIWNLLREGAAVYVAGSSTKMPADVWSTFEEIVSKETQLPRESAVRWLRA 609

Query: 328 LQRAGRYHVEAWS 340
           L++AG+Y VEAWS
Sbjct: 610 LEKAGKYLVEAWS 622

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452009|ref|XP_002280059.1| PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 1 [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/333 (79%), Positives = 293/333 (87%), Gaps = 1/333 (0%)

Query: 9   VQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERL 68
           V  +EM+N+LP+ + N +++PIKL+TFVELTMDV SASPRRYFFEVMS+FATAEHEKERL
Sbjct: 299 VHPREMENHLPNANINDSKIPIKLKTFVELTMDVASASPRRYFFEVMSFFATAEHEKERL 358

Query: 69  QYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA 128
           QYFASPEGRDDLY+YNQ+ERRTVLEVLEDFPSVQMP +WLVQLVPPLK RA+SISSS LA
Sbjct: 359 QYFASPEGRDDLYQYNQRERRTVLEVLEDFPSVQMPFEWLVQLVPPLKKRAYSISSSQLA 418

Query: 129 HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLI 188
           HPNQ+HLTV+V  WTTP+KRKRTGLCS WLAGLDPQQG+ IPAWF KGSLP PPPS+PLI
Sbjct: 419 HPNQLHLTVNVTPWTTPFKRKRTGLCSKWLAGLDPQQGVIIPAWFIKGSLPAPPPSLPLI 478

Query: 189 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFS 247
           LIGPGTGCAPFRGFVEERAIQS SG  AP++FFFGC NED DFLYR+ WLSHS N GV S
Sbjct: 479 LIGPGTGCAPFRGFVEERAIQSRSGSTAPVLFFFGCWNEDNDFLYRDFWLSHSRNGGVLS 538

Query: 248 EAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFE 307
           E KGGGF VAFSR QP KVYVQHKM E SQRIWNLL   ASIYVAGS+TKMPSDV+S FE
Sbjct: 539 EEKGGGFCVAFSRDQPHKVYVQHKMRENSQRIWNLLCEGASIYVAGSSTKMPSDVFSCFE 598

Query: 308 EIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 340
           EIVSKE    R+SA  WL+AL+RAGRYHVEAWS
Sbjct: 599 EIVSKENGVPRESAVRWLRALERAGRYHVEAWS 631

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488269|ref|XP_003633729.1| PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 2 [Vitis vinifera]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/338 (78%), Positives = 293/338 (86%), Gaps = 6/338 (1%)

Query: 9   VQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFE-----VMSYFATAEH 63
           V  +EM+N+LP+ + N +++PIKL+TFVELTMDV SASPRRYFFE     VMS+FATAEH
Sbjct: 299 VHPREMENHLPNANINDSKIPIKLKTFVELTMDVASASPRRYFFEARILYVMSFFATAEH 358

Query: 64  EKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSIS 123
           EKERLQYFASPEGRDDLY+YNQ+ERRTVLEVLEDFPSVQMP +WLVQLVPPLK RA+SIS
Sbjct: 359 EKERLQYFASPEGRDDLYQYNQRERRTVLEVLEDFPSVQMPFEWLVQLVPPLKKRAYSIS 418

Query: 124 SSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPP 183
           SS LAHPNQ+HLTV+V  WTTP+KRKRTGLCS WLAGLDPQQG+ IPAWF KGSLP PPP
Sbjct: 419 SSQLAHPNQLHLTVNVTPWTTPFKRKRTGLCSKWLAGLDPQQGVIIPAWFIKGSLPAPPP 478

Query: 184 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLN 242
           S+PLILIGPGTGCAPFRGFVEERAIQS SG  AP++FFFGC NED DFLYR+ WLSHS N
Sbjct: 479 SLPLILIGPGTGCAPFRGFVEERAIQSRSGSTAPVLFFFGCWNEDNDFLYRDFWLSHSRN 538

Query: 243 DGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDV 302
            GV SE KGGGF VAFSR QP KVYVQHKM E SQRIWNLL   ASIYVAGS+TKMPSDV
Sbjct: 539 GGVLSEEKGGGFCVAFSRDQPHKVYVQHKMRENSQRIWNLLCEGASIYVAGSSTKMPSDV 598

Query: 303 WSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 340
           +S FEEIVSKE    R+SA  WL+AL+RAGRYHVEAWS
Sbjct: 599 FSCFEEIVSKENGVPRESAVRWLRALERAGRYHVEAWS 636

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569080|ref|XP_003552734.1| PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 1 [Glycine max]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 242/324 (74%), Positives = 277/324 (85%), Gaps = 1/324 (0%)

Query: 18  LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 77
           + D + + + +P+KLRTFVE +MDV SASPRRY FEVMS+FATAEHE+ERL+YFASPEGR
Sbjct: 294 MDDHNTHDSRIPVKLRTFVEFSMDVASASPRRYLFEVMSFFATAEHERERLKYFASPEGR 353

Query: 78  DDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTV 137
           DDLY+YNQKERRTVLEVLEDFPSVQMP +WLVQLVPPLK RAFSISSS  AHPNQVHLTV
Sbjct: 354 DDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKPRAFSISSSQSAHPNQVHLTV 413

Query: 138 SVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCA 197
           +VVSWTTPYKRK+ GLCS WLA LDP  GI++P WF KG LP P PS+PLIL+GPGTGCA
Sbjct: 414 NVVSWTTPYKRKKKGLCSSWLAALDPCDGIHVPTWFHKGLLPTPSPSLPLILVGPGTGCA 473

Query: 198 PFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYV 256
           PFRGF+EERA+QS +   APIIFFFGC NED DFLYR+ WLSHS N GV SEAKGGGFYV
Sbjct: 474 PFRGFIEERAVQSRTNSTAPIIFFFGCWNEDGDFLYRDFWLSHSQNKGVLSEAKGGGFYV 533

Query: 257 AFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA 316
           AFSR QPQKVYVQHKM EQSQRIWNLL   A++Y+AGS+TKMP+DV S FEEIVS E E 
Sbjct: 534 AFSRDQPQKVYVQHKMREQSQRIWNLLAEGAAVYIAGSSTKMPADVTSAFEEIVSYENEV 593

Query: 317 SRDSAANWLKALQRAGRYHVEAWS 340
           S + A  W++AL++ G++H+EAWS
Sbjct: 594 SAEDAVRWIRALEKCGKFHIEAWS 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087289|emb|CBI33663.3| unnamed protein product [Vitis vinifera]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/334 (78%), Positives = 291/334 (87%), Gaps = 2/334 (0%)

Query: 9   VQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEV-MSYFATAEHEKER 67
           V  +EM+N+LP+ + N +++PIKL+TFVELTMDV SASPRRYFFE  + +FATAEHEKER
Sbjct: 299 VHPREMENHLPNANINDSKIPIKLKTFVELTMDVASASPRRYFFEARILFFATAEHEKER 358

Query: 68  LQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPL 127
           LQYFASPEGRDDLY+YNQ+ERRTVLEVLEDFPSVQMP +WLVQLVPPLK RA+SISSS L
Sbjct: 359 LQYFASPEGRDDLYQYNQRERRTVLEVLEDFPSVQMPFEWLVQLVPPLKKRAYSISSSQL 418

Query: 128 AHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPL 187
           AHPNQ+HLTV+V  WTTP+KRKRTGLCS WLAGLDPQQG+ IPAWF KGSLP PPPS+PL
Sbjct: 419 AHPNQLHLTVNVTPWTTPFKRKRTGLCSKWLAGLDPQQGVIIPAWFIKGSLPAPPPSLPL 478

Query: 188 ILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVF 246
           ILIGPGTGCAPFRGFVEERAIQS SG  AP++FFFGC NED DFLYR+ WLSHS N GV 
Sbjct: 479 ILIGPGTGCAPFRGFVEERAIQSRSGSTAPVLFFFGCWNEDNDFLYRDFWLSHSRNGGVL 538

Query: 247 SEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF 306
           SE KGGGF VAFSR QP KVYVQHKM E SQRIWNLL   ASIYVAGS+TKMPSDV+S F
Sbjct: 539 SEEKGGGFCVAFSRDQPHKVYVQHKMRENSQRIWNLLCEGASIYVAGSSTKMPSDVFSCF 598

Query: 307 EEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 340
           EEIVSKE    R+SA  WL+AL+RAGRYHVEAWS
Sbjct: 599 EEIVSKENGVPRESAVRWLRALERAGRYHVEAWS 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569082|ref|XP_003552735.1| PREDICTED: NADPH-dependent diflavin oxidoreductase 1-like isoform 2 [Glycine max]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/335 (72%), Positives = 277/335 (82%), Gaps = 12/335 (3%)

Query: 18  LPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEV-----------MSYFATAEHEKE 66
           + D + + + +P+KLRTFVE +MDV SASPRRY FEV           MS+FATAEHE+E
Sbjct: 297 MDDHNTHDSRIPVKLRTFVEFSMDVASASPRRYLFEVRCSNNNVMFQVMSFFATAEHERE 356

Query: 67  RLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSP 126
           RL+YFASPEGRDDLY+YNQKERRTVLEVLEDFPSVQMP +WLVQLVPPLK RAFSISSS 
Sbjct: 357 RLKYFASPEGRDDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKPRAFSISSSQ 416

Query: 127 LAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVP 186
            AHPNQVHLTV+VVSWTTPYKRK+ GLCS WLA LDP  GI++P WF KG LP P PS+P
Sbjct: 417 SAHPNQVHLTVNVVSWTTPYKRKKKGLCSSWLAALDPCDGIHVPTWFHKGLLPTPSPSLP 476

Query: 187 LILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGV 245
           LIL+GPGTGCAPFRGF+EERA+QS +   APIIFFFGC NED DFLYR+ WLSHS N GV
Sbjct: 477 LILVGPGTGCAPFRGFIEERAVQSRTNSTAPIIFFFGCWNEDGDFLYRDFWLSHSQNKGV 536

Query: 246 FSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWST 305
            SEAKGGGFYVAFSR QPQKVYVQHKM EQSQRIWNLL   A++Y+AGS+TKMP+DV S 
Sbjct: 537 LSEAKGGGFYVAFSRDQPQKVYVQHKMREQSQRIWNLLAEGAAVYIAGSSTKMPADVTSA 596

Query: 306 FEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 340
           FEEIVS E E S + A  W++AL++ G++H+EAWS
Sbjct: 597 FEEIVSYENEVSAEDAVRWIRALEKCGKFHIEAWS 631

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077154|ref|XP_002305157.1| nadph-cytochrome P450 oxydoreductase [Populus trichocarpa] gi|222848121|gb|EEE85668.1| nadph-cytochrome P450 oxydoreductase [Populus trichocarpa]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/319 (79%), Positives = 281/319 (88%), Gaps = 6/319 (1%)

Query: 28  VPIKLRTFVELTMDVTSASPRRYFFE-----VMSYFATAEHEKERLQYFASPEGRDDLYK 82
           +PIKL+TFVELTMD+ SASPRRYFFE     VMSYFATAEHEKERLQYFASPEGRDDLY+
Sbjct: 314 IPIKLKTFVELTMDIASASPRRYFFEARMLYVMSYFATAEHEKERLQYFASPEGRDDLYQ 373

Query: 83  YNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSW 142
           YNQKERRTVLEVLEDFPSVQMP +WLVQLVPPLKTRAFSISSSP AHPNQVHLTV+VVSW
Sbjct: 374 YNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKTRAFSISSSPSAHPNQVHLTVNVVSW 433

Query: 143 TTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGF 202
           TTP+KRKRTGLCS WLAGLDPQ G+YIPAWF KGSLP PPPS+PL+L+GPGTGCAPFRGF
Sbjct: 434 TTPFKRKRTGLCSTWLAGLDPQDGVYIPAWFCKGSLPPPPPSIPLVLVGPGTGCAPFRGF 493

Query: 203 VEERAIQSSSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 261
           VEERAIQ  SG AAPI+ FFGCRN E+DFLY++ WLSH+ N G  S A+GGGFYVAFSR 
Sbjct: 494 VEERAIQDMSGSAAPIMLFFGCRNQENDFLYKDFWLSHAQNSGPLSIARGGGFYVAFSRD 553

Query: 262 QPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 321
           QPQKVYVQHKM EQSQR+WNLL+  ASIYV+GS+TKMPSDV S  EEI+SKE   SR++A
Sbjct: 554 QPQKVYVQHKMREQSQRVWNLLVEGASIYVSGSSTKMPSDVMSALEEIISKEAGVSRETA 613

Query: 322 ANWLKALQRAGRYHVEAWS 340
              L+ L++ GRYHVEAWS
Sbjct: 614 VLQLRRLEKDGRYHVEAWS 632

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580311|ref|XP_002530984.1| NADPH fad oxidoreductase, putative [Ricinus communis] gi|223529436|gb|EEF31396.1| NADPH fad oxidoreductase, putative [Ricinus communis]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 251/319 (78%), Positives = 285/319 (89%), Gaps = 2/319 (0%)

Query: 24  NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKY 83
           NT  VPIKL+ FVELTMD+ SASPRRYFFEVMS++ATA+HEKERLQYF+SP+GRDDLY+Y
Sbjct: 303 NTPTVPIKLKNFVELTMDIASASPRRYFFEVMSFYATAQHEKERLQYFSSPDGRDDLYQY 362

Query: 84  NQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWT 143
           NQKERRTVLEVLEDFPSVQMP +WLVQLVPPLKTRAFSISSSP AHPNQVHLTV+VVSWT
Sbjct: 363 NQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKTRAFSISSSPSAHPNQVHLTVNVVSWT 422

Query: 144 TPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV 203
           TP+KRKRTGLCS+WLA LDPQQ IYIPAWFQKGSLP PPPS+PLIL+GPGTGCAPFRGF+
Sbjct: 423 TPFKRKRTGLCSMWLAKLDPQQSIYIPAWFQKGSLPPPPPSLPLILVGPGTGCAPFRGFL 482

Query: 204 EERAIQS-SSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 261
           EERAI   S G AAPI+FFFGCRN E+DFLYR+LWLSH+ + G+ SE +GGGFYVAFSR 
Sbjct: 483 EERAIHDMSGGAAAPIMFFFGCRNEENDFLYRDLWLSHARDGGLLSEERGGGFYVAFSRD 542

Query: 262 QPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 321
           QPQKVYVQHK+ + SQRIW+L+L  ASIYVAGS+TKMPSDV S FE+I+SKE   SR++A
Sbjct: 543 QPQKVYVQHKIRKHSQRIWDLVLRGASIYVAGSSTKMPSDVMSAFEDIISKEAGVSRETA 602

Query: 322 ANWLKALQRAGRYHVEAWS 340
              L+ L++ GRYHVEAWS
Sbjct: 603 LTLLRRLEKDGRYHVEAWS 621

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6041790|gb|AAF02110.1|AC009755_3 putative NADPH-ferrihemoprotein reductase [Arabidopsis thaliana]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 232/317 (73%), Positives = 271/317 (85%), Gaps = 2/317 (0%)

Query: 26  TEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQ 85
           T++PIKL+TFVELTMDVTSASPRRYFFE+MS++ATAEHEKERLQYFASPEGRDDLY YNQ
Sbjct: 300 TQIPIKLKTFVELTMDVTSASPRRYFFEIMSFYATAEHEKERLQYFASPEGRDDLYNYNQ 359

Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           KERR++LEVLEDFPSVQ+P DWLVQLVPPLK RAFSISSSPLAHP  VHLTVS+VSW TP
Sbjct: 360 KERRSILEVLEDFPSVQIPFDWLVQLVPPLKPRAFSISSSPLAHPAAVHLTVSIVSWITP 419

Query: 146 YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEE 205
           YKR R GLCS WLA L P+Q + IP WF KGSLP P  S+PLIL+GPGTGCAPFRGF+ E
Sbjct: 420 YKRTRKGLCSSWLASLAPEQEVNIPVWFHKGSLPAPSQSLPLILVGPGTGCAPFRGFIAE 479

Query: 206 RAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 264
           RA+Q+ S P AP++FFFGCRN+D DFLYR+ W SH+   G+ SE KGGGFY AFSR QP+
Sbjct: 480 RAVQAQSSPVAPVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPK 539

Query: 265 KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKE-GEASRDSAAN 323
           KVYVQHK+ E S+R+W+LL   A++YVAGS+TKMP DV S FE+IVS+E G  S++ A+ 
Sbjct: 540 KVYVQHKIREMSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETGGGSKEVASR 599

Query: 324 WLKALQRAGRYHVEAWS 340
           WLKAL++ GRY+VEAWS
Sbjct: 600 WLKALEKTGRYNVEAWS 616

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2076547	623	AT3G02280 [Arabidopsis thalian	0.926	0.505	0.731	5.7e-130
UNIPROTKB|E1BY65	596	NDOR1 "Uncharacterized protein	0.882	0.503	0.418	1.6e-61
ZFIN|ZDB-GENE-040426-1555	595	ndor1 "NADPH dependent diflavi	0.897	0.512	0.419	1.5e-60
UNIPROTKB|E2R7E5	703	NDOR1 "Uncharacterized protein	0.861	0.416	0.428	9.3e-59
UNIPROTKB|Q9UHB4	597	NDOR1 "NADPH-dependent diflavi	0.911	0.519	0.407	1.2e-58
UNIPROTKB|G3MXY0	597	NDOR1 "NADPH-dependent diflavi	0.879	0.500	0.423	8.4e-58
UNIPROTKB|F1RVV9	597	NDOR1 "Uncharacterized protein	0.882	0.502	0.411	7.5e-57
DICTYBASE|DDB_G0287983	633	redC "NADPH-dependent diflavin	0.811	0.436	0.422	5.3e-56
RGD|1308479	598	Ndor1 "NADPH dependent diflavi	0.847	0.481	0.417	3.7e-55
UNIPROTKB|D3YTG6	590	NDOR1 "NADPH-dependent diflavi	0.891	0.513	0.401	1.6e-54

TAIR|locus:2076547 AT3G02280 [Arabidopsis thaliana (taxid:3702)]

 Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
 Identities = 232/317 (73%), Positives = 271/317 (85%)

Query:    26 TEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQ 85
             T++PIKL+TFVELTMDVTSASPRRYFFE+MS++ATAEHEKERLQYFASPEGRDDLY YNQ
Sbjct:   307 TQIPIKLKTFVELTMDVTSASPRRYFFEIMSFYATAEHEKERLQYFASPEGRDDLYNYNQ 366

Query:    86 KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
             KERR++LEVLEDFPSVQ+P DWLVQLVPPLK RAFSISSSPLAHP  VHLTVS+VSW TP
Sbjct:   367 KERRSILEVLEDFPSVQIPFDWLVQLVPPLKPRAFSISSSPLAHPAAVHLTVSIVSWITP 426

Query:   146 YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEE 205
             YKR R GLCS WLA L P+Q + IP WF KGSLP P  S+PLIL+GPGTGCAPFRGF+ E
Sbjct:   427 YKRTRKGLCSSWLASLAPEQEVNIPVWFHKGSLPAPSQSLPLILVGPGTGCAPFRGFIAE 486

Query:   206 RAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 264
             RA+Q+ S P AP++FFFGCRN+D DFLYR+ W SH+   G+ SE KGGGFY AFSR QP+
Sbjct:   487 RAVQAQSSPVAPVMFFFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPK 546

Query:   265 KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKE-GEASRDSAAN 323
             KVYVQHK+ E S+R+W+LL   A++YVAGS+TKMP DV S FE+IVS+E G  S++ A+ 
Sbjct:   547 KVYVQHKIREMSKRVWDLLCDGAAVYVAGSSTKMPCDVMSAFEDIVSEETGGGSKEVASR 606

Query:   324 WLKALQRAGRYHVEAWS 340
             WLKAL++ GRY+VEAWS
Sbjct:   607 WLKALEKTGRYNVEAWS 623

GO:0005506 "iron ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010212 "response to ionizing radiation" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|E1BY65 NDOR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 133/318 (41%), Positives = 192/318 (60%)

Query:    29 PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
             P  +R  V   +D+ S  PRR FFE++S+F+T E E+E+LQ F+S +G+++LY Y  + R
Sbjct:   291 PCTIRHLVTHYLDI-SCVPRRSFFELLSHFSTNELEREKLQEFSSAQGQEELYSYCNRPR 349

Query:    89 RTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
             RT LE L DFP     +P ++L+ L+P ++ RAFSI+SS LAHP ++ + V+VV + T  
Sbjct:   350 RTTLEALWDFPHTTSAIPPEYLLDLIPRIRPRAFSIASSMLAHPGRIQILVAVVRYKTRL 409

Query:   147 KRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGFVE 204
              + R GLCS WLA L+P+QG + +P W +KG +  P  P  P+I+IGPGTG APFR  ++
Sbjct:   410 SKPRRGLCSTWLASLNPEQGDVRVPLWVKKGGMKFPANPDTPVIMIGPGTGVAPFRAAIQ 469

Query:   205 ERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP 263
             ER  Q   G       FFGCR +  DF  +  W    +  G          + AFSR Q 
Sbjct:   470 ERVAQGQKGNC----LFFGCRQKSKDFYCQAEW-EELVTKGFLM------LFTAFSRDQE 518

Query:   264 QKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 322
             +KVYVQH++ E  Q +W LL  + A IY+AG+A +MP+ V    + ++  EG  S   A 
Sbjct:   519 EKVYVQHRIRENGQLLWELLNGQSAHIYLAGNAKQMPAAVAEALQSVLQLEGGLSPSEAE 578

Query:   323 NWLKALQRAGRYHVEAWS 340
              +L AL+R+ R+  E WS
Sbjct:   579 EYLSALERSQRFQSETWS 596

GO:0005506 "iron ion binding" evidence=IEA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0016491 "oxidoreductase activity" evidence=IBA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0005634 "nucleus" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0036245 "cellular response to menadione" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1555 ndor1 "NADPH dependent diflavin oxidoreductase 1" [Danio rerio (taxid:7955)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 138/329 (41%), Positives = 198/329 (60%)

Query:    24 NTTEVPIKL------RTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 77
             ++TEVP +L      R  +E  +D+ SA PRR FFE+++ FAT E E+E+L  F+S  G+
Sbjct:   279 SSTEVPARLPQPCSIRFLLEHFLDI-SAVPRRSFFELLATFATDELEQEKLLEFSSAAGQ 337

Query:    78 DDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHL 135
             D L+ Y  + RRT LEVL DFP  + ++ I  L+ L P ++ R+FSI+SS L HPN++ +
Sbjct:   338 DTLHSYCNRPRRTALEVLTDFPHTTAELSIGRLLDLFPEIQPRSFSIASSLLEHPNRIQI 397

Query:   136 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP-PSVPLILIGPG 193
              ++VV + T   + R GLCS WLA LDP +G +Y+P W +KGSL  P  P  P+I++GPG
Sbjct:   398 LLAVVKYKTMLVKPRKGLCSSWLASLDPSKGDVYVPLWVKKGSLKFPQDPESPVIMVGPG 457

Query:   194 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 252
             TG APFR  ++ER  Q   G  A ++FF GCR+E  DF     W    +  G        
Sbjct:   458 TGVAPFRSAIQERVAQ---GKMANVLFF-GCRSESKDFYCGSEW-QEKVQAGQMI----- 507

Query:   253 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVS 311
                 AFSR Q  KVYVQH++ EQ + +W+L+  K A  Y+AG+A +MP+ V    + +  
Sbjct:   508 -LVTAFSRDQEDKVYVQHRVKEQGKLLWDLIAKKNAFFYIAGNAKQMPTSVCDALKAVFQ 566

Query:   312 KEGEASRDSAANWLKALQRAGRYHVEAWS 340
             KEG  S + A   L  +++ GR+  E WS
Sbjct:   567 KEGGMSENQAQEMLDGMEKNGRFQSETWS 595

GO:0016491 "oxidoreductase activity" evidence=IEA;IBA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS;IBA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0008219 "cell death" evidence=ISS

GO:0036245 "cellular response to menadione" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|E2R7E5 NDOR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 134/313 (42%), Positives = 188/313 (60%)

Query:    29 PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
             P  +R  V   +D+ S  PRR FFE+++  +  E E+E+L   +SP+G+++LY Y  + R
Sbjct:   339 PCSVRHLVAHYLDIASV-PRRSFFELLACLSPHELEREKLLQLSSPQGQEELYSYCNRPR 397

Query:    89 RTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
             RT+LEVL DFP     +P D+L+ L+P ++ RAFSI+SS LAHP ++ + V+VV + T  
Sbjct:   398 RTILEVLCDFPHTAGAIPADYLLDLIPLIRPRAFSIASSLLAHPLRLQILVAVVQYQTRL 457

Query:   147 KRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGFVE 204
             K  R GLCS WLA LDP QG +Y+P W + G L  P  P  P+I++GPGTG APFR  ++
Sbjct:   458 KEPRRGLCSSWLASLDPGQGPVYVPLWVRPGGLTFPETPDTPVIMVGPGTGVAPFRAAIQ 517

Query:   205 ERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG-GFYVAFSRKQ 262
             ER  +  +G       FFGCR  D DF +   WL          E KG    + AFSR+Q
Sbjct:   518 ERVARDQTGN----FLFFGCRWRDQDFYWEAEWLQ--------LERKGCLMLFTAFSREQ 565

Query:   263 PQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 321
              +K+YVQH++ E    +W+LL  + A  Y+AG+A  MP+DV      I  +EG  S   A
Sbjct:   566 ERKIYVQHRLRELGPLVWDLLDRQGAYFYLAGNAKCMPADVSEALASIFQEEGGLSGPDA 625

Query:   322 ANWLKALQRAGRY 334
             AN+L  LQR  R+
Sbjct:   626 ANYLARLQRTLRF 638

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0016491 "oxidoreductase activity" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0010181 "FMN binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|Q9UHB4 NDOR1 "NADPH-dependent diflavin oxidoreductase 1" [Homo sapiens (taxid:9606)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 134/329 (40%), Positives = 191/329 (58%)

Query:    19 PDIHKNTT-EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 77
             PD+   T    P  +R  V   +D+ S  PRR FFE+++  +  E E+E+L  F+S +G+
Sbjct:   281 PDVSSPTRLPQPCSMRHLVSHYLDIASV-PRRSFFELLACLSLHELEREKLLEFSSAQGQ 339

Query:    78 DDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHL 135
             ++L++Y  + RRT+LEVL DFP  +  +P D+L+ L+P ++ RAFSI+SS L HP+++ +
Sbjct:   340 EELFEYCNRPRRTILEVLCDFPHTAAAIPPDYLLDLIPVIRPRAFSIASSLLTHPSRLQI 399

Query:   136 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP-PSVPLILIGPG 193
              V+VV + T  K  R GLCS WLA LDP QG + +P W + GSL  P  P  P+I++GPG
Sbjct:   400 LVAVVQFQTRLKEPRRGLCSSWLASLDPGQGPVRVPLWVRPGSLAFPETPDTPVIMVGPG 459

Query:   194 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 252
             TG APFR  ++ER  Q  +G       FFGCR  D DF +   W      D +       
Sbjct:   460 TGVAPFRAAIQERVAQGQTGN----FLFFGCRWRDQDFYWEAEWQELEKRDCLT------ 509

Query:   253 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVS 311
                 AFSR+Q QKVYVQH++ E    +W LL  + A  Y+AG+A  MP+DV      I  
Sbjct:   510 -LIPAFSREQEQKVYVQHRLRELGSLVWELLDRQGAYFYLAGNAKSMPADVSEALMSIFQ 568

Query:   312 KEGEASRDSAANWLKALQRAGRYHVEAWS 340
             +EG      AA +L  LQ+  R+  E W+
Sbjct:   569 EEGGLCSPDAAAYLARLQQTRRFQTETWA 597

GO:0005506 "iron ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010181 "FMN binding" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IDA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0050661 "NADP binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0008219 "cell death" evidence=IDA

GO:0036245 "cellular response to menadione" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|G3MXY0 NDOR1 "NADPH-dependent diflavin oxidoreductase 1" [Bos taurus (taxid:9913)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 135/319 (42%), Positives = 189/319 (59%)

Query:    29 PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
             P  +R  V   +D+ S  PRR FFE+++  +  E E+E+L  F S  G+++L +Y  + R
Sbjct:   292 PCSVRRLVSQYLDIASV-PRRSFFELLACLSPHELEREKLWEFGSARGQEELCEYCTRPR 350

Query:    89 RTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
             RT LEVL DFP  +  +P D+L+ L+P ++ RAFSI+SS  AHP+++ + V+VV + T  
Sbjct:   351 RTALEVLCDFPHTAAAVPPDYLLDLLPLIRPRAFSIASSLRAHPSRLQILVAVVQYQTRL 410

Query:   147 KRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGFVE 204
             +  R GLCS WLA LDP QG + +P W + G L  P  P VP+I++GPGTG APFR  ++
Sbjct:   411 REPRRGLCSSWLASLDPAQGPVRVPLWVRSGGLTFPKTPDVPVIMVGPGTGVAPFRAAIQ 470

Query:   205 ERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYV-AFSRKQ 262
             ER  Q  +G     + FFGCR  D DF +   W    L      +A+G    V AFSR+Q
Sbjct:   471 ERVAQGETGN----VLFFGCRRRDQDFYWEAEW--EQL------QARGCLTLVTAFSREQ 518

Query:   263 PQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 321
              QKVYVQH++      +W LL  + A  Y+AG+A  MP+DV  T   I  +EG  S   A
Sbjct:   519 EQKVYVQHRLRALGPLVWELLDGRGAHFYLAGNAKYMPADVCDTLLSIFREEGGLSDPDA 578

Query:   322 ANWLKALQRAGRYHVEAWS 340
             A +L  LQR  R+  E W+
Sbjct:   579 AAYLAQLQRTLRFQTETWA 597

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0016491 "oxidoreductase activity" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0036245 "cellular response to menadione" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|F1RVV9 NDOR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 131/318 (41%), Positives = 182/318 (57%)

Query:    29 PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
             P  +R  V   +D++S  PRR FFE+++  +  E E+E+L   +S  G+++L +Y  + R
Sbjct:   292 PCSVRRLVSQYLDISSV-PRRSFFELLACLSPHELEREKLLELSSARGQEELCEYCTRPR 350

Query:    89 RTVLEVLEDFPSVQ--MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
             RT+LEVL DFP     +P  +L  L+PP++ RAFSI+SS LAHP ++ + V+VV + T  
Sbjct:   351 RTILEVLCDFPHTASAVPPAYLFDLIPPIRPRAFSIASSLLAHPERLQILVAVVQYRTRL 410

Query:   147 KRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPPP-SVPLILIGPGTGCAPFRGFVE 204
             K  R GLCS WLA LDP QG + +P W + G L  P     P+IL+GPGTG APFR  ++
Sbjct:   411 KEPRRGLCSSWLASLDPGQGPVQVPLWVRSGGLKFPETRDTPVILVGPGTGVAPFRAAIQ 470

Query:   205 ERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP 263
             ER  +   G     + FFGCR  D DF +   W       G  +         AFSR+Q 
Sbjct:   471 ERVARGQIGN----VLFFGCRQRDQDFYWEAEW-KELQERGCLT------LITAFSREQE 519

Query:   264 QKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 322
             QKVYVQH++ EQ   +W LL  + A  Y+AG+A  MP+ V      I  +EG  S   AA
Sbjct:   520 QKVYVQHRIREQGPLVWELLERRGAHFYLAGNAKYMPAGVSDALTSIFQEEGGLSSPEAA 579

Query:   323 NWLKALQRAGRYHVEAWS 340
              +L  LQR  R+  E W+
Sbjct:   580 AYLARLQRTLRFQTETWA 597

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0036245 "cellular response to menadione" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

DICTYBASE|DDB_G0287983 redC "NADPH-dependent diflavin oxidoreductase 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 125/296 (42%), Positives = 189/296 (63%)

Query:    27 EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQK 86
             ++PI +   V    D+   SPRRYFFE++S+F T   EKERL++F+S EG+DDL  YNQK
Sbjct:   287 KLPITIYDLVRCYFDIMG-SPRRYFFELLSHFVTNPIEKERLEFFSSTEGQDDLRTYNQK 345

Query:    87 ERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
             E+R  ++VL++FPS+++P ++L  L+PP+K R FSISSS L +PN +HLTV + ++TTP+
Sbjct:   346 EKRNYIDVLKEFPSIEIPFEYLFDLIPPIKPRPFSISSSSLLNPNTIHLTVGINTYTTPF 405

Query:   147 KRK-RTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPRPPPS--VPLILIGPGTGCAPFRGF 202
             +R  RTGLCS + +  L+      +P  F K S  R P S  +P+I++GPGTGCA FR F
Sbjct:   406 RRLFRTGLCSQYFSSFLNDNDNNIVPI-FIKESGARLPKSNEIPIIMVGPGTGCAIFRSF 464

Query:   203 VEERAI----QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVA 257
             ++ER        ++      +F+FGCR+E  D+ YR+ + S+ L  G+ S+       VA
Sbjct:   465 MQERLYFKNNSDNNNKLGDALFYFGCRSESKDYYYRDEFESN-LEKGIISKLS-----VA 518

Query:   258 FSR--KQPQKVYVQHKMLEQSQRIWNLLLSKAS-IYVAGSATKMPSDVWSTFEEIV 310
             FSR  K  +KVYVQ  +   S  IW+++ ++    Y++GS+ +MP DV  +   I+
Sbjct:   519 FSRDGKDGKKVYVQQYIENDSDLIWDIINNRNGYFYISGSSGRMPKDVKQSLLTII 574

GO:0055114 "oxidation-reduction process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA;IBA

GO:0010181 "FMN binding" evidence=IEA;ISS

GO:0005506 "iron ion binding" evidence=IEA

GO:0050661 "NADP binding" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

RGD|1308479 Ndor1 "NADPH dependent diflavin oxidoreductase 1" [Rattus norvegicus (taxid:10116)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 129/309 (41%), Positives = 182/309 (58%)

Query:    40 MDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 99
             +D+ S  PRR FFE+++  +    E+E+L  F+S  G+++L++Y  + RRT+LEVL DFP
Sbjct:   303 LDIASV-PRRSFFELLACLSPHALEREKLLEFSSARGQEELWEYCNRPRRTILEVLCDFP 361

Query:   100 SVQ--MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 157
                  +P D+L+ L+P ++ RAFSI+SS LAHP ++ + V+VV + T  K  R GLCS W
Sbjct:   362 HTAGAIPPDYLLDLIPRIRPRAFSIASSLLAHPRRLQILVAVVKYQTRLKEPRRGLCSSW 421

Query:   158 LAGLDPQQG--IYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGP 214
             LA L P Q   + +P W + GSL  P  P  P+I++GPGTG APFR  ++ER      G 
Sbjct:   422 LASLTPGQAGPVRVPLWVRPGSLVFPKTPGTPIIMVGPGTGVAPFRAAIQERVAHGQMGN 481

Query:   215 AAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYV-AFSRKQPQKVYVQHKM 272
                 + FFGCR  D DF ++  W    L      E +G    V AFSR+Q QKVYVQH++
Sbjct:   482 ----VLFFGCRQRDQDFYWQTEW--QEL------EQRGCLTLVTAFSREQAQKVYVQHRL 529

Query:   273 LEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRA 331
              E    +W LL  + A  Y+AG+A  MP+DV      I  +EG  S   AA +L  LQ+ 
Sbjct:   530 RELGPLVWELLDGQGAYFYLAGNAKYMPTDVSEALTAIFQEEGRLSTTDAAAYLARLQQT 589

Query:   332 GRYHVEAWS 340
              R+  E W+
Sbjct:   590 LRFQTETWA 598

GO:0003674 "molecular_function" evidence=ND

GO:0003958 "NADPH-hemoprotein reductase activity" evidence=IBA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IBA

GO:0008150 "biological_process" evidence=ND

GO:0008219 "cell death" evidence=IEA;ISO

GO:0010181 "FMN binding" evidence=IEA;ISO

GO:0016491 "oxidoreductase activity" evidence=ISO;IBA

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IBA

GO:0036245 "cellular response to menadione" evidence=IEA;ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA;ISO

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISO

GO:0050661 "NADP binding" evidence=IEA;ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|D3YTG6 NDOR1 "NADPH-dependent diflavin oxidoreductase 1" [Homo sapiens (taxid:9606)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 132/329 (40%), Positives = 186/329 (56%)

Query:    19 PDIHKNTT-EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGR 77
             PD+   T    P  +R  V   +D+ S  PRR FFE+++  +  E E+E+L  F+S +G+
Sbjct:   281 PDVSSPTRLPQPCSMRHLVSHYLDIASV-PRRSFFELLACLSLHELEREKLLEFSSAQGQ 339

Query:    78 DDLYKYNQKERRTVLEVLEDFP--SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHL 135
             ++L++Y  + RRT+LEVL DFP  +  +P D+L+ L+P ++ RAFSI+SS L       +
Sbjct:   340 EELFEYCNRPRRTILEVLCDFPHTAAAIPPDYLLDLIPVIRPRAFSIASSLL-------I 392

Query:   136 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG-IYIPAWFQKGSLPRPP-PSVPLILIGPG 193
              V+VV + T  K  R GLCS WLA LDP QG + +P W + GSL  P  P  P+I++GPG
Sbjct:   393 LVAVVQFQTRLKEPRRGLCSSWLASLDPGQGPVRVPLWVRPGSLAFPETPDTPVIMVGPG 452

Query:   194 TGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 252
             TG APFR  ++ER  Q  +G       FFGCR  D DF +   W      D +       
Sbjct:   453 TGVAPFRAAIQERVAQGQTGN----FLFFGCRWRDQDFYWEAEWQELEKRDCLT------ 502

Query:   253 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVS 311
                 AFSR+Q QKVYVQH++ E    +W LL  + A  Y+AG+A  MP+DV      I  
Sbjct:   503 -LIPAFSREQEQKVYVQHRLRELGSLVWELLDRQGAYFYLAGNAKSMPADVSEALMSIFQ 561

Query:   312 KEGEASRDSAANWLKALQRAGRYHVEAWS 340
             +EG      AA +L  LQ+  R+  E W+
Sbjct:   562 EEGGLCSPDAAAYLARLQQTRRFQTETWA 590

GO:0005506 "iron ion binding" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NPS8	ATR3_ARATH	1, ., 6, ., 9, 9, ., -	0.7318	0.9264	0.5056	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038202001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (626 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00024596001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (668 aa)	•	•	•	•	•	•	•		0.858
	GSVIVG00008868001	SubName- Full=Chromosome chr13 scaffold_210, whole genome shotgun sequence; (278 aa)	•						•		0.529
	GSVIVG00025889001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (435 aa)	•					•	•		0.515

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
cd06207	382	cd06207, CyPoR_like, NADPH cytochrome p450 reducta	1e-130
cd06204	416	cd06204, CYPOR, NADPH cytochrome p450 reductase (C	3e-89
COG0369	587	COG0369, CysJ, Sulfite reductase, alpha subunit (f	3e-85
cd06199	360	cd06199, SiR, Cytochrome p450- like alpha subunits	5e-69
cd06203	398	cd06203, methionine_synthase_red, Human methionine	1e-66
cd06182	267	cd06182, CYPOR_like, NADPH cytochrome p450 reducta	2e-66
cd06202	406	cd06202, Nitric_oxide_synthase, The ferredoxin-red	3e-65
cd06206	384	cd06206, bifunctional_CYPOR, These bifunctional pr	1e-60
PRK06214	530	PRK06214, PRK06214, sulfite reductase; Provisional	7e-54
TIGR01931	597	TIGR01931, cysJ, sulfite reductase [NADPH] flavopr	2e-49
pfam00667	217	pfam00667, FAD_binding_1, FAD binding domain	3e-36
PRK10953	600	PRK10953, cysJ, sulfite reductase subunit alpha; P	2e-34
cd06208	286	cd06208, CYPOR_like_FNR, These ferredoxin reductas	2e-26
cd06200	245	cd06200, SiR_like1, Cytochrome p450- like alpha su	1e-25
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	5e-20
cd06201	289	cd06201, SiR_like2, Cytochrome p450- like alpha su	3e-19
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	1e-16
PLN03116	307	PLN03116, PLN03116, ferredoxin--NADP+ reductase; P	4e-16
PLN03115	367	PLN03115, PLN03115, ferredoxin--NADP(+) reductase;	1e-10
TIGR03224	411	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc	3e-10
cd06217	235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	2e-08
cd06188	283	cd06188, NADH_quinone_reductase, Na+-translocating	7e-08
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	2e-07
cd06187	224	cd06187, O2ase_reductase_like, The oxygenase reduc	1e-05
cd06194	222	cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulf	2e-05
cd06216	243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	3e-05
COG1018	266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	4e-05
cd06212	232	cd06212, monooxygenase_like, The oxygenase reducta	3e-04
cd06221	253	cd06221, sulfite_reductase_like, Anaerobic sulfite	7e-04
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	8e-04
cd06215	231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	0.001
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	0.003
cd06211	238	cd06211, phenol_2-monooxygenase_like, Phenol 2-mon	0.003

>gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  377 bits (971), Expect = e-130
 Identities = 128/321 (39%), Positives = 176/321 (54%), Gaps = 23/321 (7%)

Query: 34  TFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEG--RDDLYKYNQKERRTV 91
                       S R+   + +  F     +  +L    + +   ++DLYK   +E RT 
Sbjct: 70  QQRGKPPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTE 129

Query: 92  ---------LEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSW 142
                    LEVL+DFPSV+  ++ L++L P +K R +SISSSPL +PN+VHL VS+VSW
Sbjct: 130 YKRYEKYTYLEVLKDFPSVRPTLEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSW 189

Query: 143 TTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRG 201
            TP  R R GLCS +LAGL   Q   +  + +K S   P  P  P+I++GPGTG APFR 
Sbjct: 190 KTPSGRSRYGLCSSYLAGLKVGQ--RVTVFIKKSSFKLPKDPKKPIIMVGPGTGLAPFRA 247

Query: 202 FVEERAIQSSSGPA-APIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFS 259
           F++ERA   + GP   P++ +FGCR+ED D+LY+E    +  +              AFS
Sbjct: 248 FLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSG------VLTTLGTAFS 301

Query: 260 RKQPQKVYVQHKMLEQSQRIWNLLLSKA-SIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           R QP+KVYVQ  + E S  ++ LL   A  IYV GS  KMP DV   FEEI+ K G    
Sbjct: 302 RDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDE 361

Query: 319 DSAANWLKALQRAGRYHVEAW 339
           + A   ++ L+  GRY VEAW
Sbjct: 362 ELAEKKIEELEERGRYVVEAW 382

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382

>gnl|CDD|99801 cd06204, CYPOR, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  273 bits (700), Expect = 3e-89
 Identities = 126/334 (37%), Positives = 183/334 (54%), Gaps = 39/334 (11%)

Query: 32  LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTV 91
           LR ++++T     A   R     ++ FA    EKERL   AS EG+D+  K+  +  R +
Sbjct: 96  LRHYLDIT-----APVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNL 149

Query: 92  LEVLEDFPSVQ---MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR 148
           LEVL+DFPS +    P D+L++L+P L+ R +SISSS   HPN++H+T  VV + TP  R
Sbjct: 150 LEVLQDFPSAKPTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGR 209

Query: 149 KRTGLCSVWLAGLDPQQ-------------------GIYIPAWFQKGS--LPRPPPSVPL 187
              G+ + WL  L P                     G  +P + ++ +  LP  P S P+
Sbjct: 210 IIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRRSNFRLPTKP-STPV 268

Query: 188 ILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGV 245
           I+IGPGTG APFRGF++ERA    SG    P + FFGCR+ D DF+Y++         G 
Sbjct: 269 IMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDEL-EEYAKLGG 327

Query: 246 FSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWST 305
             E        AFSR+QP+KVYVQH++ E ++++W L+   A IYV G A  M  DV  T
Sbjct: 328 LLELV-----TAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKT 382

Query: 306 FEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
             EI++++G  +   A  ++K L+  GRY  + W
Sbjct: 383 LLEILAEQGGMTETEAEEYVKKLKTRGRYQEDVW 416

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 416

>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

 Score =  268 bits (686), Expect = 3e-85
 Identities = 121/327 (37%), Positives = 174/327 (53%), Gaps = 34/327 (10%)

Query: 20  DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDD 79
            +   T  +   L++  E T      S  +   E +++FA  E  +  L+         D
Sbjct: 288 TVDGETLPLVEALKSHFEFT------SAPKSLLENLAHFAGQEELRRLLEQL----DIAD 337

Query: 80  LYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSV 139
           L  Y   +RRT+++VL DFP  ++P + L+ L+PPLK R +SI+SSP   P++VHLTV V
Sbjct: 338 LQDY--AKRRTLIDVLRDFPPAKLPAEELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGV 395

Query: 140 VSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPR--PPPSVPLILIGPGTGCA 197
           V +     R+R G+CS +LA L  +    IP + Q     R    P  P+I+IGPGTG A
Sbjct: 396 VRYQAEG-RERYGVCSGYLADLLEEGDT-IPVFVQPNKNFRLPEDPETPIIMIGPGTGIA 453

Query: 198 PFRGFVEERAIQSSSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGF-- 254
           PFR FV+ERA   ++G       FFGCR+  +DFLY+E W           E    G   
Sbjct: 454 PFRAFVQERA---ANGAEGKNWLFFGCRHFTEDFLYQEEW----------EEYLKDGVLT 500

Query: 255 --YVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 312
              +AFSR Q +K+YVQ ++ EQ+  +W  L   A IYV G A  M  DV     +I++K
Sbjct: 501 RLDLAFSRDQEEKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAK 560

Query: 313 EGEASRDSAANWLKALQRAGRYHVEAW 339
           EG  SR+ A  +LK L++ GRY  + +
Sbjct: 561 EGGLSREEAEEYLKELKKEGRYQRDVY 587

Length = 587

>gnl|CDD|99796 cd06199, SiR, Cytochrome p450- like alpha subunits of E

 Score =  219 bits (560), Expect = 5e-69
 Identities = 97/281 (34%), Positives = 143/281 (50%), Gaps = 29/281 (10%)

Query: 60  TAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRA 119
           T   E   L    +     +L        R VL++L   P  ++  + L+ L+ PL+ R 
Sbjct: 98  TGALELLALAALEAVLAFAEL--------RDVLDLLPIPP-ARLTAEELLDLLRPLQPRL 148

Query: 120 FSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA---GLDPQQGIYIPAWFQKG 176
           +SI+SSP A P++VHLTV+VV + + + R+R G+ S +LA          +++    Q  
Sbjct: 149 YSIASSPKAVPDEVHLTVAVVRYES-HGRERKGVASTFLADRLKEGDTVPVFV----QPN 203

Query: 177 SLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYR 233
              R P  P  P+I++GPGTG APFR F++ER    + G       FFG R+   DFLY+
Sbjct: 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGAKGKN---WLFFGERHFATDFLYQ 260

Query: 234 ELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAG 293
           +      L DGV +         AFSR Q +KVYVQ +M EQ   +W  L   A  YV G
Sbjct: 261 DELQQW-LKDGVLTR-----LDTAFSRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCG 314

Query: 294 SATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY 334
            A +M  DV +   +I++ EG    + A  +LK L++  RY
Sbjct: 315 DAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRY 355

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. Length = 360

>gnl|CDD|99800 cd06203, methionine_synthase_red, Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

 Score =  214 bits (548), Expect = 1e-66
 Identities = 108/335 (32%), Positives = 168/335 (50%), Gaps = 32/335 (9%)

Query: 19  PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRD 78
             I K  T   I L   +++        P++     ++ F + ++EK RL+   S +G +
Sbjct: 82  VHIPKVVTLRTI-LTWCLDIRA-----IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSE 135

Query: 79  DLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVS 138
           D   + +K   ++L++LE FPS + P+  L++ +P L+ R +SI+SSPL  P ++    S
Sbjct: 136 DYTDFVRKRGLSLLDLLEAFPSCRPPLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFS 195

Query: 139 VVSWTTPYKRKRTGLCSVWLAGL---DPQQGIYIPAWFQKGS---LPRPPPSVPLILIGP 192
           VV +         GLC+ WL  L       G+ +P + +  S   LP      P+I++GP
Sbjct: 196 VVEFPAK------GLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGP 249

Query: 193 GTGCAPFRGFVEERAIQSSSGPAAP---IIFFFGCRNED-DFLYRELWLSHSLNDGVFSE 248
           GTG APF GF++ R     S           FFGCR+ D D+L+R+  L   L +G+ + 
Sbjct: 250 GTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDE-LEEFLEEGILTR 308

Query: 249 AKGGGFYVAFSRKQ---PQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWS 304
                  VAFSR +       YVQ K+ E+ +++ +LLL S A IYV G A  M  DV  
Sbjct: 309 -----LIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRD 363

Query: 305 TFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
           TF +I+SKE    +  A   L  L++  RY  + W
Sbjct: 364 TFVDILSKELGLDKLEAKKLLARLRKEDRYLEDVW 398

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 398

>gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  209 bits (535), Expect = 2e-66
 Identities = 97/231 (41%), Positives = 129/231 (55%), Gaps = 13/231 (5%)

Query: 114 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF 173
           PL+ R +SI+SSP   P +VHL V VVS+  P  R R G+CS +LAGL     +    + 
Sbjct: 45  PLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGAKV--TVFI 102

Query: 174 QKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPA-APIIFFFGCRN-EDD 229
           +     R P  P+ P+I++GPGTG APFRGF++ERA   ++G A  P   FFGCRN   D
Sbjct: 103 RPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASD 162

Query: 230 FLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLLLSKAS 288
           +LYRE     +L DG  +        VAFSR+Q   KVYVQ K+ E ++ +  LL   A 
Sbjct: 163 YLYREELQ-EALKDGALTR-----LDVAFSREQAEPKVYVQDKLKEHAEELRRLLNEGAH 216

Query: 289 IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
           IYV G A  M  DV     +I++K G      A  +LK L+  GRY  + W
Sbjct: 217 IYVCGDAKSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267

>gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

 Score =  211 bits (539), Expect = 3e-65
 Identities = 117/350 (33%), Positives = 181/350 (51%), Gaps = 34/350 (9%)

Query: 5   AVSQVQHKEMKNYLPDIHKNTTE----VPIKLRTFVELTMDVTSASPRRYFFEVMSYFAT 60
            V +++  E ++    I K  T      P  LR  +   +D+T+  P     ++++  AT
Sbjct: 64  QVIKLEVLEERSTALGIIKTWTPHERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLAT 122

Query: 61  AEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAF 120
            E +KERL+         + +K+   +   +LEVLE+FPS+Q+P   L+  +P L+ R +
Sbjct: 123 DEKDKERLEVLGKGSSEYEDWKW--YKNPNILEVLEEFPSLQVPASLLLTQLPLLQPRYY 180

Query: 121 SISSSPLAHPNQVHLTVSVVSWTTPYKRK-----RTGLCSVWLAGLDPQQGIYIPAWFQK 175
           SISSSP  +P ++HLTV+VVS+ T   R        G+CS WL GL P  G  +P + + 
Sbjct: 181 SISSSPDMYPGEIHLTVAVVSYRT---RDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRS 235

Query: 176 GSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAI-----QSSSGPAAPIIFFFGCRN-E 227
                 P  PSVP+I++GPGTG APFR F ++R       +        +  FFGCRN  
Sbjct: 236 APSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNST 295

Query: 228 DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-KVYVQHKMLEQSQRIWNLLL-S 285
            D +Y+E     + N GV +E      Y A SR+  + K YVQ  + EQ++ +++ L+  
Sbjct: 296 IDDIYKEE-TEEAKNKGVLTE-----VYTALSREPGKPKTYVQDLLKEQAESVYDALVRE 349

Query: 286 KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
              IYV G  T M  DV  T + I+++ G  S + A  ++  L+   RYH
Sbjct: 350 GGHIYVCGDVT-MAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDENRYH 398

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. Length = 406

>gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

 Score =  198 bits (506), Expect = 1e-60
 Identities = 104/324 (32%), Positives = 159/324 (49%), Gaps = 40/324 (12%)

Query: 32  LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTV 91
           L ++VEL+     A+ R+     ++        K  L+  A      ++      +R +V
Sbjct: 85  LSSYVELS---QPATRRQ--LAALAEATRCPDTKALLERLAGEAYAAEV----LAKRVSV 135

Query: 92  LEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT 151
           L++LE FPS+ +P+   + ++PP++ R +SISSSPL  P    LTVSV+       + R 
Sbjct: 136 LDLLERFPSIALPLATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRY 195

Query: 152 -GLCSVWLAGLDPQQGIYI-----PAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFV 203
            G+ S +L+ L P   I++      + F      RPP  PS PLI+I  GTG APFRGF+
Sbjct: 196 RGVASSYLSSLRPGDSIHVSVRPSHSAF------RPPSDPSTPLIMIAAGTGLAPFRGFL 249

Query: 204 EERAIQSSSGPA-APIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK 261
           +ERA   + G   AP + FFGCR+ D D LYR+  L      GV S         A+SR 
Sbjct: 250 QERAALLAQGRKLAPALLFFGCRHPDHDDLYRDE-LEEWEAAGVVS------VRRAYSRP 302

Query: 262 --QPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRD 319
                + YVQ ++  + + +W L    A +YV G   +M   V    + I +++ E    
Sbjct: 303 PGGGCR-YVQDRLWAEREEVWELWEQGARVYVCGDG-RMAPGVREVLKRIYAEKDERGGG 360

Query: 320 S----AANWLKALQRAGRYHVEAW 339
           S    A  WL+ L+  GRY  + +
Sbjct: 361 SDDEEAEEWLEELRNKGRYATDVF 384

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384

>gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional

 Score =  184 bits (469), Expect = 7e-54
 Identities = 108/314 (34%), Positives = 157/314 (50%), Gaps = 25/314 (7%)

Query: 27  EVPIKLRTFVE-LTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRD-DLYKYN 84
           E PI  +T  E L  DV+        FE++SY  T    +++ +  A+ E  D D    +
Sbjct: 231 EFPIGGKTLREALLEDVSLGPAPDGLFELLSYI-TGGAARKKARALAAGEDPDGDAATLD 289

Query: 85  QKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTT 144
                 VL  LE FP ++   +  V+ + PL+ R +SISSSP A P +V LTV  V +  
Sbjct: 290 ------VLAALEKFPGIRPDPEAFVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI 343

Query: 145 PYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG---SLPRPPPSVPLILIGPGTGCAPFR 200
              R R G+ S +L   L P  G  +  + QK    +LP   P+ P+I++GPGTG APFR
Sbjct: 344 G-SRLRLGVASTFLGERLAP--GTRVRVYVQKAHGFALP-ADPNTPIIMVGPGTGIAPFR 399

Query: 201 GFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR 260
            F+ ERA  ++  P    +FF   R+  DF Y +  L+     GV +        +A+SR
Sbjct: 400 AFLHERA--ATKAPGRNWLFFGHQRSATDFFYED-ELNGLKAAGVLTR-----LSLAWSR 451

Query: 261 KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDS 320
              +K YVQ +M E    +W  L   A  YV G A +M  DV     +IV++ G  S D 
Sbjct: 452 DGEEKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDE 511

Query: 321 AANWLKALQRAGRY 334
           A  ++  L++AGRY
Sbjct: 512 AVAFVAELKKAGRY 525

Length = 530

>gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein, alpha-component

 Score =  173 bits (441), Expect = 2e-49
 Identities = 91/249 (36%), Positives = 134/249 (53%), Gaps = 15/249 (6%)

Query: 89  RTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR 148
             +++++ D+P   +  + L+ L+ PL  R +SISSS     ++VHLTV VV +   + R
Sbjct: 356 TPLIDLIRDYP-ADLDAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGR 413

Query: 149 KRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEER 206
            R G  S +LA    ++G  +P + +     R P  P  P+I+IGPGTG APFR F++ER
Sbjct: 414 ARLGGASGFLAE-RLKEGDTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQER 472

Query: 207 AIQSSSGPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQK 265
           A   + G       FFG  +   DFLY+  W  + L  GV ++       +AFSR Q +K
Sbjct: 473 AEDGAKGKNW---LFFGNPHFTTDFLYQVEW-QNYLKKGVLTKMD-----LAFSRDQAEK 523

Query: 266 VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL 325
           +YVQH++ EQ   +W  L   A IYV G A KM  DV     +I++KEG    + A  +L
Sbjct: 524 IYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYL 583

Query: 326 KALQRAGRY 334
             L+   RY
Sbjct: 584 TDLRVEKRY 592

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. Length = 597

>gnl|CDD|216051 pfam00667, FAD_binding_1, FAD binding domain

 Score =  130 bits (328), Expect = 3e-36
 Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 1/129 (0%)

Query: 29  PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKER 88
           P  LR  +   +++T   P +   E ++ +A+ E EK+RL+  +S  G+ +  ++   + 
Sbjct: 90  PTTLRQALTYYLEITGP-PTKQLLEALAQYASDEEEKQRLEKLSSDAGKQEYKEWKLNKA 148

Query: 89  RTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR 148
           RT+LEVLE+FPS Q+P ++L++L+P L+ R +SISSSP  HPN+VH+TV VV + T   R
Sbjct: 149 RTLLEVLEEFPSAQLPAEFLLELLPRLQPRYYSISSSPKVHPNEVHVTVVVVEYETGEGR 208

Query: 149 KRTGLCSVW 157
            R G+ S W
Sbjct: 209 IRKGVASNW 217

This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase. Length = 217

>gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional

 Score =  132 bits (333), Expect = 2e-34
 Identities = 81/243 (33%), Positives = 126/243 (51%), Gaps = 20/243 (8%)

Query: 98  FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 157
           F   Q+  + L+ L+ PL  R +SI+SS     N+VH+TV VV +     R R G  S +
Sbjct: 367 FAPAQLDAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDIE-GRARAGGASSF 425

Query: 158 LA---GLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSS 212
           LA     + +  ++I    +     R P  P  P+I+IGPGTG APFR F+++RA   + 
Sbjct: 426 LADRLEEEGEVRVFI----EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAP 481

Query: 213 GPAAPIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHK 271
           G       FFG  +  +DFLY+  W  + + +G+ +        +A+SR Q +K+YVQ K
Sbjct: 482 GKNW---LFFGNPHFTEDFLYQVEWQRY-VKEGLLTRID-----LAWSRDQKEKIYVQDK 532

Query: 272 MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRA 331
           + EQ   +W  +   A IYV G A +M  DV     E++++ G    ++A  +L  L+  
Sbjct: 533 LREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVE 592

Query: 332 GRY 334
            RY
Sbjct: 593 RRY 595

Length = 600

>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

 Score =  105 bits (264), Expect = 2e-26
 Identities = 66/235 (28%), Positives = 98/235 (41%), Gaps = 22/235 (9%)

Query: 114 PLKTRAFSISSSPLA---HPNQVHLTVS-VVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI 169
           P K R +SI+SS          + L V  +V         + G+CS +L  L P   + I
Sbjct: 61  PHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQI 120

Query: 170 PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAP--IIFFFGCRNE 227
                K  L    P+  LI+I  GTG APFR F+     +  +          FFG  N 
Sbjct: 121 TGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNS 180

Query: 228 DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLL 283
           D  LY +    +                 AFSR+Q      K+YVQ ++ E ++ IWNLL
Sbjct: 181 DSLLYDDELEKYPKQYPDNFR-----IDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLL 235

Query: 284 LS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE 337
                 +Y+ G    M   V       V++ G A  +    + ++L++ GR+HVE
Sbjct: 236 DKDNTHVYICG-LKGMEPGVDDALTS-VAEGGLAWEE----FWESLKKKGRWHVE 284

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286

>gnl|CDD|99797 cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E

 Score =  102 bits (257), Expect = 1e-25
 Identities = 69/240 (28%), Positives = 93/240 (38%), Gaps = 35/240 (14%)

Query: 104 PIDW----LVQLVP--PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 157
              W    + ++ P  PL  R +SI+S P      + L V  V           GL S W
Sbjct: 29  GAQWQAGDIAEIGPRHPLPHREYSIASLP--ADGALELLVRQVRHAD----GGLGLGSGW 82

Query: 158 LAGLDPQQGIYIPAWFQKG-SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAA 216
           L    P  G  +    ++      P    PLILIG GTG A  R  +  RA         
Sbjct: 83  LTRHAPI-GASVALRLRENPGFHLPDDGRPLILIGNGTGLAGLRSHLRARARAGRHRNW- 140

Query: 217 PIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ 275
                FG R    DF  RE  L      G  +        +AFSR Q QK YVQ ++   
Sbjct: 141 ---LLFGERQAAHDFFCREE-LEAWQAAGHLARLD-----LAFSRDQAQKRYVQDRLRAA 191

Query: 276 SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
           +  +   +   A+IYV GS   M   V +  +EI+ +E           ++AL  AGRY 
Sbjct: 192 ADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGEEA----------VEALLAAGRYR 241

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 245

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score = 86.7 bits (215), Expect = 5e-20
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 31/198 (15%)

Query: 105 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQ 164
           +D  +        RA+SI+SSP     ++ LTV         K    G  S WL  L P 
Sbjct: 29  VDLHLPGDGRGLRRAYSIASSPDE-EGELELTV---------KIVPGGPFSAWLHDLKPG 78

Query: 165 Q-----GIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPII 219
                 G     +           S P++LI  G G  PFR  +   A   +  P   I 
Sbjct: 79  DEVEVSGPGGDFF------LPLEESGPVVLIAGGIGITPFRSMLRHLA---ADKPGGEIT 129

Query: 220 FFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRI 279
             +G R   D L+ +     +     F         +A SR+   K+    ++  +++ +
Sbjct: 130 LLYGARTPADLLFLDELEELAKEGPNFR------LVLALSRESEAKLGPGGRIDREAEIL 183

Query: 280 WNLLLSKAS-IYVAGSAT 296
             L     + +Y+ G   
Sbjct: 184 ALLPDDSGALVYICGPPA 201

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E

 Score = 86.2 bits (214), Expect = 3e-19
 Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 31/211 (14%)

Query: 108 LVQLVPPLKT--RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQ 165
           L+ ++PP     R +S++SS  +    + + V         ++   GLCS +L GL P  
Sbjct: 89  LLGILPPGSDVPRFYSLASS--SSDGFLEICV---------RKHPGGLCSGYLHGLKP-- 135

Query: 166 GIYIPAWFQKGSLPRPPPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGC 224
           G  I A+ +     RP     P+ILIG GTG AP  GF+   A +       P+  ++G 
Sbjct: 136 GDTIKAFIRPNPSFRPAKGAAPVILIGAGTGIAPLAGFIRANAARR------PMHLYWGG 189

Query: 225 RNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLL 283
           R+   DFLY +  L   L DG  +       + AFSR  P   YVQ ++   ++R+  L+
Sbjct: 190 RDPASDFLYED-ELDQYLADGRLT-----QLHTAFSRT-PDGAYVQDRLRADAERLRRLI 242

Query: 284 LSKASIYVAGSATKMPSDVWSTFEEIVSKEG 314
              A I V GS   M   V +  EEI++ + 
Sbjct: 243 EDGAQIMVCGS-RAMAQGVAAVLEEILAPQP 272

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score = 73.9 bits (182), Expect = 1e-16
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 189 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSE 248
           +I  GTG AP    ++             +   +G R EDD L RE            ++
Sbjct: 1   MIAGGTGIAPLYSVLKALLEDEDGTE---VYLVYGNRTEDDLLLREELEE-------LAK 50

Query: 249 AKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAG 293
                  VA SR       +K YV   +LE+     +  L    +YV G
Sbjct: 51  KYPNLKVVAVSRTDDGWYGRKGYVTDALLEEHL---SEDLGDTDVYVCG 96

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional

 Score = 77.1 bits (190), Expect = 4e-16
 Identities = 68/242 (28%), Positives = 98/242 (40%), Gaps = 32/242 (13%)

Query: 114 PLKTRAFSISSSPLAHP---NQVHLTVSVVSWTTPYKRK----RTGLCSVWLAGLDPQQG 166
           P   R +SI+S+            L V    +  P   K    + G+CS +L    P   
Sbjct: 78  PHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDK 137

Query: 167 IYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRG-----FVEERAIQSSSGPAAPIIF 220
           + I     K  L P   P+   I++  GTG APFRG     F+E+       G A     
Sbjct: 138 VQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAW---L 194

Query: 221 FFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY-VAFSRKQPQ----KVYVQHKMLEQ 275
           F G  N D  LY + +      +    +      Y  A SR+Q      K+YVQ K+ E 
Sbjct: 195 FLGVANSDSLLYDDEF------ERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEY 248

Query: 276 SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
           S  I+ LL + A IY  G    MP  +  T + +  + GE    S    L  L++  ++H
Sbjct: 249 SDEIFKLLDNGAHIYFCGLKGMMPG-IQDTLKRVAEERGE----SWEEKLSGLKKNKQWH 303

Query: 336 VE 337
           VE
Sbjct: 304 VE 305

Length = 307

>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional

 Score = 61.9 bits (150), Expect = 1e-10
 Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 36/244 (14%)

Query: 114 PLKTRAFSISSSPL---AHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 142 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKIT 201

Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++  GTG APFR F+     E+      +G A     F G  
Sbjct: 202 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAW---LFLGVP 258

Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF--SRKQP----QKVYVQHKMLEQSQRI 279
                LY+E +           E     F + F  SR+Q     +K+Y+Q +M E ++ +
Sbjct: 259 TSSSLLYKEEFEK-------MKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEEL 311

Query: 280 WNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYH 335
           W  LL K + YV     K M   +      + +K+G        +W    K L++A +++
Sbjct: 312 WE-LLKKDNTYVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWFEYKKQLKKAEQWN 363

Query: 336 VEAW 339
           VE +
Sbjct: 364 VEVY 367

Length = 367

>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 60/235 (25%), Positives = 95/235 (40%), Gaps = 27/235 (11%)

Query: 114 PLKTRAFSISS---SPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLDPQQGIYI 169
           P   R +S++S         N + LTV  V  TT ++     G+ S +L  L     + +
Sbjct: 195 PHYARMYSVASPRNGERPGYNNLALTVKRV--TTDHQGNAVRGVASNYLCDLKKGDKVQV 252

Query: 170 PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDD 229
              F    L    P   +++I  GTG AP R   E R  +   G    ++ FFG R +++
Sbjct: 253 IGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEE 312

Query: 230 FLYRE--LWLSHSLNDGVFSEAKGGGFYVAFSR--KQPQKVYVQHKMLEQSQRIWNLLLS 285
             Y      L     D  F          AFSR  +QP++ YVQ  + E++  +  LL  
Sbjct: 313 LPYFGPLQKLPKDFIDINF----------AFSRTPEQPKR-YVQDAIRERAADVAALLKD 361

Query: 286 KAS-IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
             + IY+ G    M   V   F ++ +  G +           L+  GR H+E +
Sbjct: 362 PNTYIYICG-LKGMEEGVLDAFRDVCATNGLSWETLEP----RLRAEGRLHLETY 411

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411

>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 21/121 (17%)

Query: 118 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPA---WF 173
           R++SI+SSP     +V LTV         KR   G  S +L   +     + +      F
Sbjct: 51  RSYSIASSPTQRG-RVELTV---------KRVPGGEVSPYLHDEVKVGDLLEVRGPIGTF 100

Query: 174 QKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYR 233
                  P    P++L+  G+G  P    +  R      G   P    +  R  +D ++R
Sbjct: 101 TW----NPLHGDPVVLLAGGSGIVPLMSMIRYRR---DLGWPVPFRLLYSARTAEDVIFR 153

Query: 234 E 234
           +
Sbjct: 154 D 154

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235

>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK---RTGLCSVWLAGLDPQQGIYIPAWF 173
           +RA+S+++ P A   ++ L V      TP         G+ S ++  L P   +     F
Sbjct: 86  SRAYSLANYP-AEEGELKLNVR---IATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPF 141

Query: 174 QKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYR 233
             G          ++ IG G G AP R  +        S     I F++G R+  +  Y+
Sbjct: 142 --GEFFIKDTDREMVFIGGGAGMAPLRSHIFHLLKTLKSK--RKISFWYGARSLKELFYQ 197

Query: 234 ELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 264
           E + +       F       ++   S  QP+
Sbjct: 198 EEFEALEKEFPNFK------YHPVLSEPQPE 222

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. Length = 283

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 27/163 (16%)

Query: 81  YKYNQKERRT----VLEVLEDFPSVQMPIDWLVQL-VPPLKTRAFSISSSPLAHPNQVHL 135
           YK  +KE  +    +L +   F ++       V L VP    R +S++S+P     ++ L
Sbjct: 10  YKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPGGVRRPYSLASAP-DDKGELEL 68

Query: 136 TVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL----PRPPPSVPLILIG 191
            + V            G  + ++ GL     I +     +G L     R     P++LI 
Sbjct: 69  HIRV---------YEVGKVTKYIFGLKEGDKIRV-----RGPLGNGFLREKIGKPVLLIA 114

Query: 192 PGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234
            GTG AP     +E       G A  +   +G R   D L  +
Sbjct: 115 GGTGIAPLYAIAKELK---EKGDANKVTLLYGARTAKDLLLLD 154

Length = 252

>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 21/125 (16%)

Query: 114 PLKTRAFSISSSPLAHPNQVHLTVSVVS--WTTPY--KRKRTGLCSVWLAGLDPQQGIYI 169
           P   RA+S ++ P     ++   V  V     +       + G   V L+G  P    Y+
Sbjct: 38  PRTWRAYSPANPP-NEDGEIEFHVRAVPGGRVSNALHDELKVG-DRVRLSG--PYGTFYL 93

Query: 170 PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDD 229
                     R     P++ I  GTG AP R  VE+ A++       P+  FFG R E D
Sbjct: 94  ----------RRDHDRPVLCIAGGTGLAPLRAIVED-ALRRGEPR--PVHLFFGARTERD 140

Query: 230 FLYRE 234
               E
Sbjct: 141 LYDLE 145

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224

>gnl|CDD|99791 cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 26/130 (20%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQ------QGIYIP 170
            R++S +S P    N++   +         +RK  G  S WL            QG +  
Sbjct: 39  ARSYSPTSLP-DGDNELEFHI---------RRKPNGAFSGWLGEEARPGHALRLQGPFGQ 88

Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDF 230
           A+++      P     L+L+G GTG AP  G     A+    G    I    G R+ DD 
Sbjct: 89  AFYRPEYGEGP-----LLLVGAGTGLAPLWGIARA-AL--RQGHQGEIRLVHGARDPDDL 140

Query: 231 LYRE--LWLS 238
                 LWL+
Sbjct: 141 YLHPALLWLA 150

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 222

>gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 30/127 (23%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA---------GLDPQQGI 167
            R++S+SSSP      + LTV         K +  GL S WL           L   QG 
Sbjct: 64  WRSYSLSSSPTQEDGTITLTV---------KAQPDGLVSNWLVNHLAPGDVVELSQPQGD 114

Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNE 227
                F    LP P P   L+LI  G+G  P    +       + GP A ++  +  R  
Sbjct: 115 -----FV---LPDPLPP-RLLLIAAGSGITPVMSMLRTLL---ARGPTADVVLLYYARTR 162

Query: 228 DDFLYRE 234
           +D ++ +
Sbjct: 163 EDVIFAD 169

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243

>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 34/169 (20%)

Query: 70  YFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH 129
               P+G    ++  Q            + +V +P      L      RA+S+SS+P   
Sbjct: 24  TLEPPDGLRLDFEPGQ------------YITVGLPNGGEPLL------RAYSLSSAPDED 65

Query: 130 PNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPRPPPSVPLI 188
                  +SV       KR+  G  S WL   L     + + A      L   P    L+
Sbjct: 66  S---LYRISV-------KREDGGGGSNWLHDHLKVGDTLEVSAPAGDFVLDDLPER-KLL 114

Query: 189 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL 237
           L+  G G  PF   +     +      A ++     R   D  +R+   
Sbjct: 115 LLAGGIGITPFLSMLRTLLDRG----PADVVLVHAARTPADLAFRDELE 159

Length = 266

>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 186 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234
           P++LIG G+G AP    + +    ++SG   P+ FF+G R   D  Y E
Sbjct: 105 PIVLIGGGSGMAPLLSLLRD---MAASGSDRPVRFFYGARTARDLFYLE 150

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232

>gnl|CDD|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 20/119 (16%)

Query: 119 AFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL 178
             SISS P      + LT+           +R G  +  L  L P   + +   F  G  
Sbjct: 45  PISISSDP-TRRGPLELTI-----------RRVGRVTEALHELKPGDTVGLRGPFGNGF- 91

Query: 179 PRPPPSV---PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234
             P   +    L+L+  G G AP R  +    I  +      +   +G R  +D L++E
Sbjct: 92  --PVEEMKGKDLLLVAGGLGLAPLRSLI--NYILDNREDYGKVTLLYGARTPEDLLFKE 146

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. Length = 253

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS 238
           R     PLILI  GTG AP +  +E    Q S     PI  ++G R E+D    EL  +
Sbjct: 94  REDSDRPLILIAGGTGFAPIKSILEHLLAQGSKR---PIHLYWGARTEEDLYLDELLEA 149

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 20/123 (16%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK 175
            RA+++SSSP   P+ + +TV         KR   GL S WL   L    G  + A    
Sbjct: 46  YRAYTLSSSPSR-PDSLSITV---------KRVPGGLVSNWLHDNLKV--GDELWASGPA 93

Query: 176 G--SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYR 233
           G  +L   P    L+L+  G+G  P       R +   + P A I+F    R+  D ++ 
Sbjct: 94  GEFTLIDHPAD-KLLLLSAGSGITPMMSMA--RWLL-DTRPDADIVFIHSARSPADIIFA 149

Query: 234 -EL 235
            EL
Sbjct: 150 DEL 152

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 231

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 20/117 (17%)

Query: 120 FSISSSPLAHPNQVHLTVSVVS-WT-TPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 177
           F+ISS+P     ++  T+  +  +T    +R + G   V + G  P    Y       G 
Sbjct: 44  FTISSAP-DPDGRLRFTIKALGDYTRRLAERLKPGT-RVTVEG--P----Y-------GR 88

Query: 178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234
                     I I  G G  PF   +E  A     G A P+  F+  R+ +D ++ +
Sbjct: 89  FTFDDRRARQIWIAGGIGITPFLALLEALAA---RGDARPVTLFYCVRDPEDAVFLD 142

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 109 VQL-VPPLK-TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQG 166
           V L  P  + TRAFSI+SSP +   ++ L + +V          T      L   D +  
Sbjct: 42  VNLQAPGYEGTRAFSIASSP-SDAGEIELHIRLVP-----GGIATTYVHKQLKEGD-ELE 94

Query: 167 IYIP--AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGC 224
           I  P   +F + S  RP     +I I  G+G +  R  + +       G    I  FFG 
Sbjct: 95  ISGPYGDFFVRDSDQRP-----IIFIAGGSGLSSPRSMILDLL---ERGDTRKITLFFGA 146

Query: 225 RNEDDFLYREL 235
           R   +  Y + 
Sbjct: 147 RTRAELYYLDE 157

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	100.0
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	100.0
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	100.0
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	100.0
cd06203	398	methionine_synthase_red Human methionine synthase	100.0
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	100.0
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	100.0
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	100.0
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	100.0
PRK06214	530	sulfite reductase; Provisional	100.0
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	100.0
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	100.0
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	100.0
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	100.0
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	100.0
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	100.0
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	100.0
PF00667	219	FAD_binding_1: FAD binding domain; InterPro: IPR00	99.97
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	99.96
PRK10926	248	ferredoxin-NADP reductase; Provisional	99.96
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	99.96
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	99.96
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	99.96
PRK08051	232	fre FMN reductase; Validated	99.96
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.96
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	99.96
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	99.96
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	99.96
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.96
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	99.95
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.95
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.95
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.95
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	99.95
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	99.95
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	99.95
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	99.95
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	99.95
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	99.95
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	99.95
PRK05713	312	hypothetical protein; Provisional	99.94
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	99.94
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	99.94
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	99.94
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	99.94
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	99.94
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	99.94
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.93
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	99.93
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.93
PTZ00274	325	cytochrome b5 reductase; Provisional	99.93
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	99.93
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	99.93
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	99.93
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	99.93
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.93
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	99.93
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	99.92
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.92
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.91
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	99.91
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.91
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.91
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.9
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.9
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.9
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	99.9
PLN02252	888	nitrate reductase [NADPH]	99.89
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.88
PRK05802	320	hypothetical protein; Provisional	99.88
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.87
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.85
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.83
cd06193	235	siderophore_interacting Siderophore interacting pr	99.83
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.8
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.79
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.79
PLN02292	702	ferric-chelate reductase	99.65
PLN02844	722	oxidoreductase/ferric-chelate reductase	99.65
PLN02631	699	ferric-chelate reductase	99.63
KOG3378	385	consensus Globins and related hemoproteins [Energy	99.38
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	98.92
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	98.88
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.6
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	98.56
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	97.86
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	94.32
PF08021	117	FAD_binding_9: Siderophore-interacting FAD-binding	93.18

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=100.00  E-value=8.9e-71  Score=521.61  Aligned_cols=295  Identities=49%  Similarity=0.851  Sum_probs=280.7

Q ss_pred             CCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCC
Q 019521           25 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP  104 (340)
Q Consensus        25 ~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p  104 (340)
                      -+|.|+|+++++++|+||++ +|+++||..|+.|++|+.||++|+++++.+|.++|++|+.+++||++|+|++|+|+++|
T Consensus       277 ~~~~p~sl~~~lk~~~D~~S-vPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp  355 (574)
T KOG1159|consen  277 LLPNPLSLLNLLKYVLDFNS-VPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLP  355 (574)
T ss_pred             ccCCchhHHHHHHHhccccc-CcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCC
Confidence            38889999999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC-CC
Q 019521          105 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-PP  183 (340)
Q Consensus       105 ~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~-~~  183 (340)
                      .++|++.+|.++||+|||||+|..  ..++|+|++|+|+|..++.|.|+||+||++|++  |+.|.+.+..|.+..| +.
T Consensus       356 ~~yl~d~~P~IrPR~fSIas~~~~--~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~--g~~i~~~v~~g~l~~p~~~  431 (574)
T KOG1159|consen  356 IDYLLDLLPVIRPRAFSIASSPGA--HHLELLVAIVEYKTILKEPRRGLCSNWLASLKP--GDEIPIKVRPGTLYFPSDL  431 (574)
T ss_pred             HHHHHHhccccccceeeeccCCCC--CceeEEEEEEEEeeeccccccchhHHHHhhcCC--CCeEEEEEecCccccCCCC
Confidence            999999999999999999999975  349999999999999999999999999999999  9999999999999999 77


Q ss_pred             CCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCC
Q 019521          184 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ  262 (340)
Q Consensus       184 ~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~  262 (340)
                      ++|+||||+|||||||||+++++..++.    ....||||||+++ ||+|.+||.+..+.          ..+.|||||+
T Consensus       432 ~~PlImVGPGTGvAPfRa~i~er~~q~~----~~~~lFfGCR~K~~Df~y~~eW~~~~~~----------~~~~AFSRDq  497 (574)
T KOG1159|consen  432 NKPLIMVGPGTGVAPFRALIQERIYQGD----KENVLFFGCRNKDKDFLYEDEWTELNKR----------AFHTAFSRDQ  497 (574)
T ss_pred             CCCeEEEcCCCCcccHHHHHHHHHhhcc----CCceEEEecccCCccccccchhhhhhcc----------hhhhhccccc
Confidence            9999999999999999999999998544    4569999999999 99999999988665          4556999999


Q ss_pred             CCccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          263 PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       263 ~~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      ++|.||||.+++.++.+|+++.+ ++.|||||+++.|+++|+++|.+|+.+.+|.++|.|. |++.|++.+||+.|+|
T Consensus       498 e~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~~V~~al~eI~~~e~g~~~e~a~-~l~~lekt~ryq~ETW  574 (574)
T KOG1159|consen  498 EQKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPKDVKEALIEIVGKEGGFSKEVAS-YLKALEKTRRYQQETW  574 (574)
T ss_pred             ccceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcHHHHHHHHHHhhhhcCCChHHHH-HHHHHHHhccccccCC
Confidence            99999999999999999999985 9999999999999999999999999999999888777 9999999999999999

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=100.00  E-value=4.4e-70  Score=545.38  Aligned_cols=310  Identities=41%  Similarity=0.767  Sum_probs=291.4

Q ss_pred             CCCCCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCC
Q 019521           20 DIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP   99 (340)
Q Consensus        20 ~~~~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp   99 (340)
                      -+.+.|++.|+|++++|+||+||++ +|++++++.||.||+|+.||++|+.|+++.|..+|.+++....++++|||++||
T Consensus       326 ~~~~~p~~~~~t~~~~l~~~ldi~~-~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fp  404 (645)
T KOG1158|consen  326 AKKPHPFPLPTTLRTALTHYLDITG-PPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFP  404 (645)
T ss_pred             cccCCCCCCCCcHHHHHHHhccccC-CCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCC
Confidence            3455678999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCC-CccCCCCccccccCCCCCCcEEE--EEeecC
Q 019521          100 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIP--AWFQKG  176 (340)
Q Consensus       100 s~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~--v~~~~g  176 (340)
                      +|++|+++|+..+|.++||+|||||||..+++.++++|.+|.|.++.+ ..+.|+||+||+++++  |+.+.  +.....
T Consensus       405 s~kpP~~~ll~~lp~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~--~~~~~~~~~~~~s  482 (645)
T KOG1158|consen  405 SCKPPLPHLLELLPRLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKP--GEKVPNPVPVGKS  482 (645)
T ss_pred             CCCCCHHHHHHhCccccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCC--ccccCcceeeccc
Confidence            999999999999999999999999999999999999999999998775 6678999999999999  99988  555567


Q ss_pred             CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC---CCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCC
Q 019521          177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG---PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG  251 (340)
Q Consensus       177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~---~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~  251 (340)
                      .|++| ++++|+||||+||||||||||+|++.....++   ..+ +|||||||+.+ |++|++||+++.+. |.++    
T Consensus       483 ~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~-~~l~----  556 (645)
T KOG1158|consen  483 MFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKA-GILT----  556 (645)
T ss_pred             ceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhc-Ccch----
Confidence            89999 89999999999999999999999999986654   234 89999999999 99999999999877 8887    


Q ss_pred             CcEEEEEecCC-CCccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 019521          252 GGFYVAFSRKQ-PQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQ  329 (340)
Q Consensus       252 ~~~~~a~Sr~~-~~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~  329 (340)
                       ++.+||||++ +++.||||.+++.+++||++|.+ +++|||||++++|+++|.++|.+|+++.+++++++|.+++++|+
T Consensus       557 -~l~~A~SReq~~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk  635 (645)
T KOG1158|consen  557 -RLDVAFSREQTPKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLK  635 (645)
T ss_pred             -hheeeeeccCCCCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhh
Confidence             8999999998 77999999999999999999966 99999999996699999999999999999999999999999999


Q ss_pred             HCCCEEEeec
Q 019521          330 RAGRYHVEAW  339 (340)
Q Consensus       330 ~~~R~~~d~w  339 (340)
                      +++||++|||
T Consensus       636 ~~~Ry~~DVw  645 (645)
T KOG1158|consen  636 KSKRYIEDVW  645 (645)
T ss_pred             hccccccccC
Confidence            9999999999

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=1.9e-67  Score=515.94  Aligned_cols=307  Identities=41%  Similarity=0.754  Sum_probs=284.8

Q ss_pred             CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCC
Q 019521           23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ  102 (340)
Q Consensus        23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~  102 (340)
                      ..|+|.|+|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++ +|.++|.+|+.++++|++|+|.+||+++
T Consensus        83 ~~~~~~~~tl~~~l~~~~Dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~~f~s~~  160 (416)
T cd06204          83 KVPFPCPTTYRTALRHYLDITA-PVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQDFPSAK  160 (416)
T ss_pred             CCCCCCCccHHHHHHhhEEeCC-CCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHHhCcccC
Confidence            3568999999999999999999 9999999999999999999999999998 9999999999999999999999999999


Q ss_pred             ---CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCC-----------------
Q 019521          103 ---MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-----------------  162 (340)
Q Consensus       103 ---~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-----------------  162 (340)
                         +|+++|++.+|+++||+|||||+|..+++.++|+|++|+|.++.++.+.|+||+||.++.                 
T Consensus       161 ~~~~pl~~ll~~lp~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~  240 (416)
T cd06204         161 PTPPPFDFLIELLPRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGP  240 (416)
T ss_pred             CCCCCHHHHHHhCccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccc
Confidence               999999999999999999999999878899999999999999888889999999999776                 


Q ss_pred             ----CCCCcEEEEEeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCCc-hhhhHHH
Q 019521          163 ----PQQGIYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYREL  235 (340)
Q Consensus       163 ----~~~G~~v~v~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~~-d~ly~~e  235 (340)
                          +  |+.|.+.++.|.|.+| +..+|+||||+|||||||+||++++......+ ..++++||||||+++ |++|++|
T Consensus       241 ~~~~~--g~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~e  318 (416)
T cd06204         241 RKKGG--GSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDE  318 (416)
T ss_pred             cccCC--CCeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHH
Confidence                7  9999999999999998 66799999999999999999999987543211 247899999999994 9999999


Q ss_pred             HHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCC
Q 019521          236 WLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE  315 (340)
Q Consensus       236 L~~~~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~  315 (340)
                      |++|.+..+++      +++++|||++..++|||+.+.+..+.+++++.+++.||||||+..|+++|.++|.++++++++
T Consensus       319 l~~~~~~~~~~------~l~~a~Sr~~~~k~yVq~~i~~~~~~~~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~  392 (416)
T cd06204         319 LEEYAKLGGLL------ELVTAFSREQPKKVYVQHRLAEHAEQVWELINEGAYIYVCGDAKNMARDVEKTLLEILAEQGG  392 (416)
T ss_pred             HHHHHHcCCce------EEEEEECcCCCCCcchHHHHHHhHHHHHHHHHcCCEEEEECCcccchHHHHHHHHHHHHHhCC
Confidence            99998873456      899999998877899999999988899888877899999999844999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCEEEeec
Q 019521          316 ASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       316 ~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +++++|++|+++|+++|||++|||
T Consensus       393 ~~~~~A~~~l~~l~~~gRy~~dvw  416 (416)
T cd06204         393 MTETEAEEYVKKLKTRGRYQEDVW  416 (416)
T ss_pred             CCHHHHHHHHHHHHHcCCeeEecC
Confidence            999999999999999999999999

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=100.00  E-value=2.3e-67  Score=513.89  Aligned_cols=304  Identities=36%  Similarity=0.648  Sum_probs=278.4

Q ss_pred             CCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCC
Q 019521           25 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP  104 (340)
Q Consensus        25 ~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p  104 (340)
                      +++.++|++++|++||||++ +|++.||+.||.||+|+.+|++|++|++  +.++|.+|+.+++++++|+|.+||++++|
T Consensus        88 ~~~~~~tl~~ll~~~lDl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~s~~~~  164 (406)
T cd06202          88 ERLPPCTLRQALTRYLDITT-PPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFPSLQVP  164 (406)
T ss_pred             CCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCCcCCCC
Confidence            45679999999999999999 9999999999999999999999999997  88899999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCC--CCccCCCCccccccCCCCCCcEEEEEeec-CCCCCC
Q 019521          105 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY--KRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GSLPRP  181 (340)
Q Consensus       105 ~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~--~~~~~G~~S~~L~~l~~~~G~~v~v~~~~-g~F~l~  181 (340)
                      +++|++.+|+++||+|||||+|..+++.++|+|+++.|.++.  ++.+.|+||+||+++++  |+.|.+.++. |.|.+|
T Consensus       165 ~~~ll~~lp~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~~~~~~F~lp  242 (406)
T cd06202         165 ASLLLTQLPLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTP--GDTVPCFVRSAPSFHLP  242 (406)
T ss_pred             HHHHHHhCcccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCC--CCEEEEEEeeCCccCCC
Confidence            999999999999999999999987789999999999998753  34578999999999999  9999999865 489998


Q ss_pred             -CCCCCeEEEeCCcchhhHHHHHHHHHHhc-----CCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcE
Q 019521          182 -PPSVPLILIGPGTGCAPFRGFVEERAIQS-----SSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGF  254 (340)
Q Consensus       182 -~~~~pii~Ia~GtGIAPf~s~l~~~~~~~-----~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~  254 (340)
                       +..+|+||||+|||||||+||++++....     .....++++||||||+++ |++|++||+++.+. +.+.     ++
T Consensus       243 ~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~-~~~~-----~~  316 (406)
T cd06202         243 EDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK-GVLT-----EV  316 (406)
T ss_pred             CCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHc-CCCc-----eE
Confidence             77799999999999999999999986431     111348999999999994 99999999999988 6664     89


Q ss_pred             EEEEecCCC-CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019521          255 YVAFSRKQP-QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG  332 (340)
Q Consensus       255 ~~a~Sr~~~-~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~  332 (340)
                      +++|||++. .++||||.+.++.+.+++++. .++.||||||+ .|+++|.++|.+|+++++++++++|++|+++|+++|
T Consensus       317 ~~a~SR~~~~~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~-~M~~~V~~~L~~i~~~~~~~s~~~A~~~~~~l~~~g  395 (406)
T cd06202         317 YTALSREPGKPKTYVQDLLKEQAESVYDALVREGGHIYVCGDV-TMAEDVSQTIQRILAEHGNMSAEEAEEFILKLRDEN  395 (406)
T ss_pred             EEEEcCCCCCCCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCC-chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            999999865 589999999999999999884 59999999998 899999999999999999999999999999999999


Q ss_pred             CEEEeecC
Q 019521          333 RYHVEAWS  340 (340)
Q Consensus       333 R~~~d~w~  340 (340)
                      ||++|||+
T Consensus       396 Ry~~dvw~  403 (406)
T cd06202         396 RYHEDIFG  403 (406)
T ss_pred             CeEEEecc
Confidence            99999996

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=100.00  E-value=1.9e-67  Score=513.43  Aligned_cols=301  Identities=34%  Similarity=0.649  Sum_probs=277.4

Q ss_pred             CCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCC
Q 019521           24 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM  103 (340)
Q Consensus        24 ~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~  103 (340)
                      .++|.++|++++|++||||++ +|+++||+.||.||+|+.+|++|.+|++.++.++|.+|+.+.++|++|||++||++++
T Consensus        82 ~~~p~~~tl~~ll~~~~Dl~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~  160 (398)
T cd06203          82 VHIPKVVTLRTILTWCLDIRA-IPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP  160 (398)
T ss_pred             CCCCCCccHHHHHHHhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence            357788999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCC-----CCCCcEEEEEee-cCC
Q 019521          104 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD-----PQQGIYIPAWFQ-KGS  177 (340)
Q Consensus       104 p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~-----~~~G~~v~v~~~-~g~  177 (340)
                      |++++++.+|+++||+|||||+|..+++.++|+|+++.+++      .|+||+||+++.     +  |+.|.+.++ .|.
T Consensus       161 pl~~ll~~lp~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~--G~~v~i~~~~~g~  232 (398)
T cd06203         161 PLSLLIEHLPRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSH--GVKVPFYLRSSSR  232 (398)
T ss_pred             CHHHHHHhCccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCC--CCEEEEEEecCCC
Confidence            99999999999999999999999776899999999997754      699999999887     8  999999995 678


Q ss_pred             CCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcC---CCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCC
Q 019521          178 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSS---SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG  251 (340)
Q Consensus       178 F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~---~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~  251 (340)
                      |.+| + ..+|+||||+|||||||+||++++.....   ....++++||||||+++ |++|++||++|.+. +.+.    
T Consensus       233 F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~-~~~~----  307 (398)
T cd06203         233 FRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEE-GILT----  307 (398)
T ss_pred             cCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHc-CCCc----
Confidence            9998 5 67899999999999999999999886321   11348999999999995 99999999999988 6664    


Q ss_pred             CcEEEEEecCCC---CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019521          252 GGFYVAFSRKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA  327 (340)
Q Consensus       252 ~~~~~a~Sr~~~---~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~  327 (340)
                       +++++|||++.   .++||||.+.+..+.+++++. +++.||||||+..|+++|+++|.+|+++++|+++++|++|+++
T Consensus       308 -~~~~a~SRd~~~~g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~  386 (398)
T cd06203         308 -RLIVAFSRDENDGSTPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLAR  386 (398)
T ss_pred             -eEEEEECCCCCCCCCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence             79999999877   489999999999999999875 4899999999768999999999999999999999999999999


Q ss_pred             HHHCCCEEEeec
Q 019521          328 LQRAGRYHVEAW  339 (340)
Q Consensus       328 l~~~~R~~~d~w  339 (340)
                      |+++|||++|+|
T Consensus       387 l~~~gRy~~dvw  398 (398)
T cd06203         387 LRKEDRYLEDVW  398 (398)
T ss_pred             HHHcCCeeeecC
Confidence            999999999999

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=1e-66  Score=506.43  Aligned_cols=305  Identities=46%  Similarity=0.782  Sum_probs=282.3

Q ss_pred             CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCC
Q 019521           23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ  102 (340)
Q Consensus        23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~  102 (340)
                      ..++|.|+|++++|++||||++ +|+++||+.||.||+|+.+|++|.++++.++.+.|.+|   ++++++|+|.+||+++
T Consensus        74 ~~~~~~~~t~~~ll~~~~dl~~-~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~  149 (382)
T cd06207          74 KPPFPEPISVRQLLKKFLDIFG-KPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVR  149 (382)
T ss_pred             CCCCCCCccHHHHHHhhEEeCC-CCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCC
Confidence            3568999999999999999999 99999999999999999999999999999999999888   7899999999999999


Q ss_pred             CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC-
Q 019521          103 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-  181 (340)
Q Consensus       103 ~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~-  181 (340)
                      +|++.+++.+|+++||+|||||+|..+++.++|+|+++.|.++.++.+.|+||+||.++++  |+.|.+.+|.|.|.+| 
T Consensus       150 ~~~~~ll~~lp~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~~p~g~F~lp~  227 (382)
T cd06207         150 PTLEQLLELCPLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKV--GQRVTVFIKKSSFKLPK  227 (382)
T ss_pred             CCHHHHHHhCcCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCC--CCEEEEEEECCcccCCC
Confidence            9999999999999999999999997678999999999999998888889999999999999  9999999999999998 


Q ss_pred             CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          182 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       182 ~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      +..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|++||++|.+. +...     +++++||
T Consensus       228 ~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~~a~S  301 (382)
T cd06207         228 DPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKS-GVLT-----TLGTAFS  301 (382)
T ss_pred             CCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhC-CCCc-----eEEEEec
Confidence            66799999999999999999999987642111 34899999999999 599999999999987 5543     8999999


Q ss_pred             cCCCCccchhhhHHHhHHHHHHhhcCC-CEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEee
Q 019521          260 RKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA  338 (340)
Q Consensus       260 r~~~~~~yVqd~l~~~~~~l~~~l~~~-~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~  338 (340)
                      |++..++|||+.+.+..+.+++++.++ +.||||||+..|+++|+++|.+++++++++++++|++|+++|+++|||++||
T Consensus       302 rd~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv  381 (382)
T cd06207         302 RDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEILKKHGGGDEELAEKKIEELEERGRYVVEA  381 (382)
T ss_pred             CCCCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence            998889999999999988999888765 4999999993399999999999999999999999999999999999999999


Q ss_pred             c
Q 019521          339 W  339 (340)
Q Consensus       339 w  339 (340)
                      |
T Consensus       382 w  382 (382)
T cd06207         382 W  382 (382)
T ss_pred             C
Confidence            9

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.8e-65  Score=509.80  Aligned_cols=294  Identities=41%  Similarity=0.730  Sum_probs=277.9

Q ss_pred             cCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHH
Q 019521           27 EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPID  106 (340)
Q Consensus        27 ~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~  106 (340)
                      +.++++.++|++|+|++. .| |.|+..++.|+.++..++.|..++    ..++..|..  +++++|+|.+||++++|.+
T Consensus       291 ~~~~~~~~~l~~~~e~~~-~~-~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~  362 (587)
T COG0369         291 GETLPLVEALKSHFEFTS-AP-KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAE  362 (587)
T ss_pred             CCcchHHHHHHHheeccc-ch-HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHH
Confidence            788999999999999999 87 999999999999999999999887    566777775  8999999999999999999


Q ss_pred             HHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC-CCCCC-CCC
Q 019521          107 WLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPRP-PPS  184 (340)
Q Consensus       107 ~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~F~l~-~~~  184 (340)
                      .++..+|+++||.|||||++..++++|+|+|++|+|.+. ++.+.|+||+||+++.+ .|+.|.+.++.+ .|++| ++.
T Consensus       363 ~li~~l~~lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~-~g~~i~v~v~~n~nf~lp~~~~  440 (587)
T COG0369         363 ELIDLLPPLKPRLYSIASSPGVSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLE-EGDTIPVFVQPNKNFRLPEDPE  440 (587)
T ss_pred             HHHHhCccCCCeeeEeccCCCCCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhc-CCCeEEEEeccCCccccCCCCC
Confidence            999999999999999999999999999999999999997 55899999999997643 299999999888 89999 777


Q ss_pred             CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC
Q 019521          185 VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP  263 (340)
Q Consensus       185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~  263 (340)
                      +||||||+||||||||||+|++...+.+   +++|||||||+.+ ||+|++||+++.+. |.++     ++..||||++.
T Consensus       441 ~PiIMIG~GTGIAPFRafvq~r~~~~~~---gk~wLfFG~R~~~~DfLY~~Ewe~~~~~-G~~~-----~l~~AfSRdq~  511 (587)
T COG0369         441 TPIIMIGPGTGIAPFRAFVQERAANGAE---GKNWLFFGCRHFTEDFLYQEEWEEYLKD-GVLT-----RLDLAFSRDQE  511 (587)
T ss_pred             CceEEEcCCCCchhHHHHHHHHHhcccc---CceEEEecCCCCccchhhHHHHHHHHhc-CCce-----eEEEEEeecCC
Confidence            9999999999999999999999999877   7999999999988 99999999999999 8776     99999999999


Q ss_pred             CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          264 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       264 ~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +|.||||+|++++++||+++.+++.|||||+++.|+++|.++|.+|+.+.++++.++|.+++++|++++||++|||
T Consensus       512 ~KiYVQd~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy  587 (587)
T COG0369         512 EKIYVQDRLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY  587 (587)
T ss_pred             CCccHHHHHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence            9999999999999999999999999999997789999999999999999999999999999999999999999999

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=100.00  E-value=6.8e-64  Score=486.90  Aligned_cols=302  Identities=31%  Similarity=0.562  Sum_probs=275.1

Q ss_pred             CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCC
Q 019521           23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ  102 (340)
Q Consensus        23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~  102 (340)
                      +.|++.|+|++++|++|+||++ +|+++||+.||.||+|+.+|++|..+++    ++|.+++.++++|++|+|.+||+++
T Consensus        72 ~~p~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~l~~~~~----~~~~~~~~~~~~~~~d~l~~f~s~~  146 (384)
T cd06206          72 GLPLGTPISVSELLSSYVELSQ-PATRRQLAALAEATRCPDTKALLERLAG----EAYAAEVLAKRVSVLDLLERFPSIA  146 (384)
T ss_pred             CCCCCCCEEHHHHHHhhccccC-CCCHHHHHHHHHHCCCHHHHHHHHHhhh----hHHHHHHHhcCCCHHHHHHhCCCCC
Confidence            3567889999999999999999 9999999999999999999999998853    5788889899999999999999999


Q ss_pred             CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCC-CccCCCCccccccCCCCCCcEEEEE--eecCCCC
Q 019521          103 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYIPAW--FQKGSLP  179 (340)
Q Consensus       103 ~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v~v~--~~~g~F~  179 (340)
                      +|+++++..+|+++||+|||||+|..+++.++|+|+++.+.++.+ +.+.|.||+||.++++  |+.|.+.  ++.|.|.
T Consensus       147 ~~~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~i~~p~g~F~  224 (384)
T cd06206         147 LPLATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRP--GDSIHVSVRPSHSAFR  224 (384)
T ss_pred             CCHHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCC--CCeEEEEEecCCCccC
Confidence            999999999999999999999999766789999999999887554 5678999999999999  9999976  5678999


Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      ++ +..+|+||||+|||||||+||++++......+ ..++++||||||+. .|++|++||++|.+. +++      ++++
T Consensus       225 l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~~------~l~~  297 (384)
T cd06206         225 PPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA-GVV------SVRR  297 (384)
T ss_pred             CCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHC-CCe------EEEE
Confidence            98 66789999999999999999999987642211 23789999999999 599999999999987 889      9999


Q ss_pred             EEecCCCC-ccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHC
Q 019521          257 AFSRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG----EASRDSAANWLKALQRA  331 (340)
Q Consensus       257 a~Sr~~~~-~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~----~~~~~~a~~~~~~l~~~  331 (340)
                      ++||++.. ++|||+.+.+..+.+++++.+++.||||||+ .|+++|.++|.+++.+++    |++.++|++|+++|+++
T Consensus       298 a~Sr~~~~~~~yVq~~i~~~~~~~~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~~~~~A~~~~~~l~~~  376 (384)
T cd06206         298 AYSRPPGGGCRYVQDRLWAEREEVWELWEQGARVYVCGDG-RMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLEELRNK  376 (384)
T ss_pred             EecccCCCCCEechhhHHhhHHHHHHHHHCCcEEEEECCC-chHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHc
Confidence            99998764 8999999999888898888778999999999 799999999999999999    99999999999999999


Q ss_pred             CCEEEeec
Q 019521          332 GRYHVEAW  339 (340)
Q Consensus       332 ~R~~~d~w  339 (340)
                      |||++|+|
T Consensus       377 gry~~dvw  384 (384)
T cd06206         377 GRYATDVF  384 (384)
T ss_pred             CCeeeecC
Confidence            99999999

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=4.2e-60  Score=456.39  Aligned_cols=289  Identities=33%  Similarity=0.583  Sum_probs=260.2

Q ss_pred             CCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCC--CCC
Q 019521           25 TTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--SVQ  102 (340)
Q Consensus        25 ~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp--s~~  102 (340)
                      ++|.++|++++|++||||++ +    +++.|+.+|+++.++++|..    ++.++|.+     +++++|+|++||  +++
T Consensus        66 ~~~~~~t~~~~l~~~~dl~~-~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~  131 (360)
T cd06199          66 VGGGTLPLREALIKHYEITT-L----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR  131 (360)
T ss_pred             CCCCcccHHHHHHhhhhhcc-C----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence            46789999999999999999 4    45569999999988888775    57777754     589999999999  999


Q ss_pred             CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccC-CCCCCcEEEEEeecC-CCCC
Q 019521          103 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL-DPQQGIYIPAWFQKG-SLPR  180 (340)
Q Consensus       103 ~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l-~~~~G~~v~v~~~~g-~F~l  180 (340)
                      +|..+++..+|+++||+|||||+|..+++.++|+|++|+|.+. .+.+.|+||+||+++ ++  |+.|.++++.| .|.+
T Consensus       132 ~~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~--Gd~v~v~~~~~~~F~l  208 (360)
T cd06199         132 LTAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKE--GDTVPVFVQPNPHFRL  208 (360)
T ss_pred             CCHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCC--CCEEEEEEecCCCcCC
Confidence            9999999999999999999999997778899999999999874 466789999999975 58  99999998665 7999


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      | +..+|+||||+|||||||+||++++......   ++++||||||+++ |++|++||+++.+. +...     +++++|
T Consensus       209 p~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~D~~y~~el~~~~~~-~~~~-----~~~~a~  279 (360)
T cd06199         209 PEDPDAPIIMVGPGTGIAPFRAFLQEREATGAK---GKNWLFFGERHFATDFLYQDELQQWLKD-GVLT-----RLDTAF  279 (360)
T ss_pred             CCCCCCCEEEEecCcChHHHHHHHHHHHhccCC---CcEEEEEcCCCCccchhHHHHHHHHHHc-CCCe-----EEEEEE
Confidence            8 6678999999999999999999999876544   8999999999985 99999999999987 4433     899999


Q ss_pred             ecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEee
Q 019521          259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEA  338 (340)
Q Consensus       259 Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~  338 (340)
                      ||++..++|||+.+.++.+.+++++.+++.||||||++.|+++|+++|.+|+++++++++++|++|+++|+++|||++|+
T Consensus       280 Sr~~~~~~yVq~~l~~~~~~~~~~~~~~~~vYvCG~~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv  359 (360)
T cd06199         280 SRDQAEKVYVQDRMREQGAELWAWLEEGAHFYVCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDV  359 (360)
T ss_pred             ccCCCCCccHHHHHHHhHHHHHHHHhCCCEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeec
Confidence            99988889999999999999998887789999999987899999999999999999999999999999999999999999


Q ss_pred             c
Q 019521          339 W  339 (340)
Q Consensus       339 w  339 (340)
                      |
T Consensus       360 w  360 (360)
T cd06199         360 Y  360 (360)
T ss_pred             C
Confidence            9

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=100.00  E-value=1.6e-59  Score=475.93  Aligned_cols=289  Identities=30%  Similarity=0.529  Sum_probs=263.5

Q ss_pred             CcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHHH
Q 019521           28 VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDW  107 (340)
Q Consensus        28 ~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~~  107 (340)
                      .++|++++|++|+||+.  |++.||+.++.++.++.    |.++..  +.+.+.+|..  +++++|||++|| ++++.+.
T Consensus       308 ~~~tl~~~l~~~~dl~~--~~~~~l~~~a~~~~~~~----l~~~~~--~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q  376 (600)
T PRK10953        308 KTLPLAEALQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAALQHYAA--TTPIVDMVRFAP-AQLDAEQ  376 (600)
T ss_pred             CCCCHHHHHHHhcccCC--CcHHHHHHHHHhCCCHH----HHHHhc--CHHHHHHHhc--CCCHHHHHHhCC-CCCCHHH
Confidence            47899999999999998  57899999999998754    333443  5566777764  699999999998 6899999


Q ss_pred             HHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC-CCCCC-CCC
Q 019521          108 LVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG-SLPRP-PPS  184 (340)
Q Consensus       108 l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g-~F~l~-~~~  184 (340)
                      ++..+|+++||+|||||+|..++++++|+|++|+|.. .++.+.|+||+||. .+++  |+.|.+.++.| .|++| ++.
T Consensus       377 ~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp~~~~  453 (600)
T PRK10953        377 LIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEE--EGEVRVFIEHNDNFRLPANPE  453 (600)
T ss_pred             HHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCC--CCEEEEEeccCCcccCCCCCC
Confidence            9999999999999999999777899999999999985 47788999999998 5899  99999999765 89999 778


Q ss_pred             CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC
Q 019521          185 VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP  263 (340)
Q Consensus       185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~  263 (340)
                      +|+||||+||||||||||++++......   +++|||||||+.. |++|++||++|.+. |.++     +++++|||++.
T Consensus       454 ~piImIg~GTGIAPfrsflq~r~~~~~~---~~~~LffG~R~~~~D~lY~~El~~~~~~-g~l~-----~l~~afSRd~~  524 (600)
T PRK10953        454 TPVIMIGPGTGIAPFRAFMQQRAADGAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GLLT-----RIDLAWSRDQK  524 (600)
T ss_pred             CCEEEEecCcCcHHHHHHHHHHHHcCCC---CCeEEEeeccCCccchhHHHHHHHHHHc-CCcc-----eEEEEECCCCC
Confidence            9999999999999999999999887655   8999999999966 99999999999998 8887     89999999998


Q ss_pred             CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          264 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       264 ~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +++||||+|.++.+++|+++.++++|||||+++.|+++|.++|.+|+++++|+++++|++|+++|+++|||++|||
T Consensus       525 ~k~YVQ~~l~e~~~~l~~~l~~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy  600 (600)
T PRK10953        525 EKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY  600 (600)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHCCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            8999999999999999999988999999999878999999999999999999999999999999999999999999

>PRK06214 sulfite reductase; Provisional

Probab=100.00  E-value=1.1e-58  Score=461.43  Aligned_cols=292  Identities=34%  Similarity=0.584  Sum_probs=260.0

Q ss_pred             CcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHHH
Q 019521           28 VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDW  107 (340)
Q Consensus        28 ~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~~  107 (340)
                      .++|++++|++|+||++ +| +.||+.|+.+++++. |++|+.|++.+..+..     ....+++|+|++||++++|+++
T Consensus       235 ~~~tlr~~L~~~~Dl~~-~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~vldvL~~fp~~~~~~~~  306 (530)
T PRK06214        235 GGKTLREALLEDVSLGP-AP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDVLAALEKFPGIRPDPEA  306 (530)
T ss_pred             CCccHHHHHHHheeccC-CC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcHHHHHHhCCCCCCCHHH
Confidence            58999999999999999 65 789999999998776 8888888763322221     1246899999999999999999


Q ss_pred             HHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC-CCCCC-CCC
Q 019521          108 LVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG-SLPRP-PPS  184 (340)
Q Consensus       108 l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g-~F~l~-~~~  184 (340)
                      +++.+|+++||+|||||+|..+++.++|+|++|+|.+ .++.+.|+||+||. ++++  |+.|.++++.+ .|.+| +..
T Consensus       307 lle~lp~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~--Gd~V~v~i~~~~gF~lp~~~~  383 (530)
T PRK06214        307 FVEALDPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAP--GTRVRVYVQKAHGFALPADPN  383 (530)
T ss_pred             HHhhcCCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCC--CCEEEEEecCCCCCccCCCCC
Confidence            9999999999999999999767899999999999985 46778999999997 7999  99999988433 49998 677


Q ss_pred             CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC
Q 019521          185 VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP  263 (340)
Q Consensus       185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~  263 (340)
                      +|+||||+|||||||+||++++......   ++++||||||+.+ |++|++||++|.+. +.++     +++++|||++.
T Consensus       384 ~PiImIg~GTGIAPfrsfLq~r~~~~~~---g~~~LffG~R~~~~D~ly~dEL~~l~~~-g~l~-----~l~~afSRd~~  454 (530)
T PRK06214        384 TPIIMVGPGTGIAPFRAFLHERAATKAP---GRNWLFFGHQRSATDFFYEDELNGLKAA-GVLT-----RLSLAWSRDGE  454 (530)
T ss_pred             CCEEEEcCCeeHHHHHHHHHHHHHhcCC---CCeEEEEEecCChhhhHHHHHHHHHHHh-CCce-----EEEEEEecCCC
Confidence            8999999999999999999998876544   8899999998876 99999999999987 6664     79999999988


Q ss_pred             CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          264 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       264 ~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +++|||+.|.++.+++++++.++++||||||++.|+++|+++|.+|+++++++++++|++|+++|+++|||++|||
T Consensus       455 ~k~YVQ~~L~e~~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY~~Dvw  530 (530)
T PRK06214        455 EKTYVQDRMRENGAELWKWLEEGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQADVY  530 (530)
T ss_pred             CCCchhhHHHHHHHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEecC
Confidence            8999999999999999998877999999999757989999999999999999999999999999999999999999

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=100.00  E-value=2.3e-58  Score=469.14  Aligned_cols=290  Identities=33%  Similarity=0.586  Sum_probs=262.5

Q ss_pred             cCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHH
Q 019521           27 EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPID  106 (340)
Q Consensus        27 ~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~  106 (340)
                      +.++|++++|++|+||+.  +++.||+.+|.+|+|+..++.+    +  +.+.+.+|+.  +++++|+|.+|| ++++.+
T Consensus       304 ~~~~tl~~~l~~~~dl~~--~~~~~l~~la~~~~~~~l~~~~----~--~~~~~~~y~~--~~~~~dvl~~fp-~~~~~g  372 (597)
T TIGR01931       304 GKTIPLFEALITHFELTQ--NTKPLLKAYAELTGNKELKALI----A--DNEKLKAYIQ--NTPLIDLIRDYP-ADLDAE  372 (597)
T ss_pred             CCCcCHHHHHHhceeCCC--CCHHHHHHHHHhcCCHHHHHHh----c--CHHHHHHHHc--CCCHHHHHHHCC-CCCCHH
Confidence            457899999999999998  5799999999999998655433    3  5667888885  789999999999 788888


Q ss_pred             HHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeec-CCCCCC-CC
Q 019521          107 WLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GSLPRP-PP  183 (340)
Q Consensus       107 ~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~-g~F~l~-~~  183 (340)
                      .++.++|++.||+|||||+|..+++.++|+|++|+|.. .++.+.|.||+||++ +++  |++|.+.++. |.|++| ++
T Consensus       373 q~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~~~F~lp~~~  449 (597)
T TIGR01931       373 QLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKE--GDTVPVYIEPNDNFRLPEDP  449 (597)
T ss_pred             HHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCC--CCEEEEEEeeCCcccCCCCC
Confidence            88999999999999999999777889999999999975 577889999999996 999  9999999865 479998 77


Q ss_pred             CCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEecCC
Q 019521          184 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ  262 (340)
Q Consensus       184 ~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~  262 (340)
                      .+|+||||+|||||||+||++++......   ++++||||||+.. |++|++||++|.+. +.++     +++++|||++
T Consensus       450 ~~piImIg~GTGIAPfrsflq~r~~~~~~---g~~~LffG~R~~~~D~ly~~El~~~~~~-~~l~-----~l~~afSRd~  520 (597)
T TIGR01931       450 DTPIIMIGPGTGVAPFRAFMQERAEDGAK---GKNWLFFGNPHFTTDFLYQVEWQNYLKK-GVLT-----KMDLAFSRDQ  520 (597)
T ss_pred             CCCEEEEcCCcCchhHHHHHHHHHHccCC---CCEEEEECCCCCCcchhHHHHHHHHHHc-CCCc-----eeEEEEecCC
Confidence            89999999999999999999999877655   8999999999955 99999999999988 7775     7999999987


Q ss_pred             CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          263 PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       263 ~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      ..++||||+|.++.+++++++.++++|||||++..|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus       521 ~~k~yVqd~l~e~~~~~~~~l~~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~s~~~A~~~l~~l~~~~RY~~DVy  597 (597)
T TIGR01931       521 AEKIYVQHRIREQGAELWQWLQEGAHIYVCGDAKKMAKDVHQALLDIIAKEGHLDAEEAEEYLTDLRVEKRYQRDVY  597 (597)
T ss_pred             CCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            77999999999999999998878999999995559999999999999999999999999999999999999999999

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=100.00  E-value=5.5e-42  Score=328.63  Aligned_cols=225  Identities=26%  Similarity=0.418  Sum_probs=192.8

Q ss_pred             CCCHHHHHHhcCC-------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEE
Q 019521          102 QMPIDWLVQLVPP-------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPA  171 (340)
Q Consensus       102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v  171 (340)
                      ..|||++....|.       ..+|+|||||+|..   +++.++|+|+.+.|.+..+....|.||+||+++++  ||.|.+
T Consensus       123 f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~--Gd~V~v  200 (367)
T PLN03115        123 YREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GAEVKI  200 (367)
T ss_pred             cCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCC--cCEEEE
Confidence            4789998877653       35799999999843   25789999999988876667788999999999999  999999


Q ss_pred             EeecCCCC-CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHhHhcCC-Cc
Q 019521          172 WFQKGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF  246 (340)
Q Consensus       172 ~~~~g~F~-l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l  246 (340)
                      .+|.|.|. +| +..+|+||||+|||||||+||++++.......  ..++++||||||+.+|++|.+||++|.+.++ ++
T Consensus       201 ~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f  280 (367)
T PLN03115        201 TGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENF  280 (367)
T ss_pred             EeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCE
Confidence            99999765 56 66789999999999999999999876543211  1368999999999999999999999987644 78


Q ss_pred             cccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHH
Q 019521          247 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA  321 (340)
Q Consensus       247 ~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a  321 (340)
                            +++.++||++.    .++|||+.+.++.+++++++.. +++||+|||+ +|.++|.++|.++....+ +   ++
T Consensus       281 ------~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~~~l~~~~~~vYiCGp~-~M~~~V~~~l~~l~~~~g-~---~~  349 (367)
T PLN03115        281 ------RLDFAVSREQTNAKGEKMYIQTRMAEYAEELWELLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAKDG-I---DW  349 (367)
T ss_pred             ------EEEEEEcCCCcccCCcceeehhHHHHHHHHHHhhcccCCeEEEEeCCH-HHHHHHHHHHHHHHHHhC-c---cH
Confidence                  99999999864    4789999999999999988754 7899999998 999999999999998864 3   58


Q ss_pred             HHHHHHHHHCCCEEEeec
Q 019521          322 ANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       322 ~~~~~~l~~~~R~~~d~w  339 (340)
                      ++++++|+++|||+.|+|
T Consensus       350 ~~~~~~lk~~~r~~~e~y  367 (367)
T PLN03115        350 FEYKKQLKKAEQWNVEVY  367 (367)
T ss_pred             HHHHHHHHHCCCeEEecC
Confidence            999999999999999998

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=9.1e-41  Score=309.62  Aligned_cols=229  Identities=43%  Similarity=0.738  Sum_probs=200.6

Q ss_pred             CCCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC-CCC
Q 019521          102 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~F~  179 (340)
                      ..||||+...+|. ..+|+|||+|.|....+.++|+|+.+.+++.......|.+|+||+++++  |+.|.+.+|.| .|.
T Consensus        32 ~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~--Gd~v~v~~p~G~~f~  109 (267)
T cd06182          32 YQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQL--GAKVTVFIRPAPSFR  109 (267)
T ss_pred             cCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCC--CCEEEEEEecCCccc
Confidence            3799998887765 4699999999986556899999999877665555667999999999999  99999999999 899


Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      ++ +..+|+||||+|||||||++|++++....... ..++++||||+|+. +|++|.++|++|.+...++      ++++
T Consensus       110 l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~------~~~~  183 (267)
T cd06182         110 LPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALT------RLDV  183 (267)
T ss_pred             CCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcc------eEEE
Confidence            98 65789999999999999999999998741100 12789999999999 7999999999999874567      8999


Q ss_pred             EEecCCCC-ccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCc-cHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCE
Q 019521          257 AFSRKQPQ-KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY  334 (340)
Q Consensus       257 a~Sr~~~~-~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~-M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~  334 (340)
                      ++||++.. ++||++.+.+..+.+++.+.+++.||+|||+ . |++.+.+.|.++++++++++.++|++++++|++.|||
T Consensus       184 ~~S~~~~~~~~~v~~~l~~~~~~l~~~l~~~~~vyvCGp~-~~m~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (267)
T cd06182         184 AFSREQAEPKVYVQDKLKEHAEELRRLLNEGAHIYVCGDA-KSMAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRY  262 (267)
T ss_pred             EEccCCCCCceehHHHHHHhHHHHHHHHhcCCEEEEECCc-ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCe
Confidence            99997664 7899999988777777777667799999999 7 9999999999999999999999999999999999999


Q ss_pred             EEeec
Q 019521          335 HVEAW  339 (340)
Q Consensus       335 ~~d~w  339 (340)
                      ++|+|
T Consensus       263 ~~~~~  267 (267)
T cd06182         263 VEDVW  267 (267)
T ss_pred             EEecC
Confidence            99999

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=100.00  E-value=5.3e-38  Score=294.01  Aligned_cols=224  Identities=29%  Similarity=0.465  Sum_probs=186.3

Q ss_pred             CCCHHHHHHhcCC--------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCCC-CccCCCCccccccCCCCCCcEE
Q 019521          102 QMPIDWLVQLVPP--------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKRTGLCSVWLAGLDPQQGIYI  169 (340)
Q Consensus       102 ~~p~~~l~~~lp~--------~~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~~-~~~~G~~S~~L~~l~~~~G~~v  169 (340)
                      ..||||+...+|.        ..+|+|||||+|..   +++.++|+|+.+.+.++.. ..+.|.+|+||+++++  |+.|
T Consensus        41 ~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v  118 (286)
T cd06208          41 YLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKP--GDDV  118 (286)
T ss_pred             ccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCC--CCEE
Confidence            4689997776553        23799999999853   2478999999987655332 4556999999999999  9999


Q ss_pred             EEEeecCCCCC-C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCC--CCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-
Q 019521          170 PAWFQKGSLPR-P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-  244 (340)
Q Consensus       170 ~v~~~~g~F~l-~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~--~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-  244 (340)
                      .+.+|.|.|.+ + +..+|+||||+|||||||+||++++......  ...++++|+||+|+.+|++|.++|+++.+.++ 
T Consensus       119 ~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~  198 (286)
T cd06208         119 QITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPD  198 (286)
T ss_pred             EEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCC
Confidence            99999998765 4 4567999999999999999999998875210  12268999999999999999999999998644 


Q ss_pred             CccccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHH
Q 019521          245 VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRD  319 (340)
Q Consensus       245 ~l~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~  319 (340)
                      ++      +++.++||++.    .++||++.+.+..+.+++.+.. +..||+|||+ .|+++|.+.|.+++.     +..
T Consensus       199 ~~------~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~vYiCGp~-~m~~~v~~~L~~~~~-----~~~  266 (286)
T cd06208         199 NF------RIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTHVYICGLK-GMEPGVDDALTSVAE-----GGL  266 (286)
T ss_pred             cE------EEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcEEEEeCCc-hHHHHHHHHHHHHHh-----ccH
Confidence            67      89999998754    4789999999887777776664 5699999998 999999999999987     236


Q ss_pred             HHHHHHHHHHHCCCEEEeec
Q 019521          320 SAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       320 ~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +|++++.+|+++|||..|+|
T Consensus       267 ~~~~~~~~~~~~gr~~~~~~  286 (286)
T cd06208         267 AWEEFWESLKKKGRWHVEVY  286 (286)
T ss_pred             HHHHHHHHHHHcCCeEEecC
Confidence            89999999999999999999

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=100.00  E-value=4.4e-38  Score=297.31  Aligned_cols=225  Identities=27%  Similarity=0.414  Sum_probs=185.0

Q ss_pred             CCCHHHHHHhcCCC---------CcceeecCCCCCCC---CCeEEEEEEEEEecCCCCCc----cCCCCccccccCCCCC
Q 019521          102 QMPIDWLVQLVPPL---------KTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRK----RTGLCSVWLAGLDPQQ  165 (340)
Q Consensus       102 ~~p~~~l~~~lp~~---------~pR~YSIaS~p~~~---~~~v~l~V~~v~~~~~~~~~----~~G~~S~~L~~l~~~~  165 (340)
                      ..||||+...+|..         ..|+|||||+|..+   +..++|+|+.+.|.++....    +.|.+|+||+++++  
T Consensus        57 f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--  134 (307)
T PLN03116         57 YWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKP--  134 (307)
T ss_pred             eecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCC--
Confidence            37899987776632         47999999999432   23899999988766543222    68999999999999  


Q ss_pred             CcEEEEEeecCCCCC-C--CCCCCeEEEeCCcchhhHHHHHHHHHHhcCC--CCCCCEEEEEeccCCchhhhHHHHHHhH
Q 019521          166 GIYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--GPAAPIIFFFGCRNEDDFLYRELWLSHS  240 (340)
Q Consensus       166 G~~v~v~~~~g~F~l-~--~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~--~~~~~~~L~~G~R~~~d~ly~~eL~~~~  240 (340)
                      |+.|.+.+|.|.|.+ +  +..+|+||||+|||||||+||++++......  ...++++||||+|+.+|++|.+||++|.
T Consensus       135 Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~  214 (307)
T PLN03116        135 GDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYL  214 (307)
T ss_pred             CCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHH
Confidence            999999999999876 4  3457999999999999999999988764321  0126899999999999999999999998


Q ss_pred             hcCC-CccccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCC
Q 019521          241 LNDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE  315 (340)
Q Consensus       241 ~~~g-~l~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~  315 (340)
                      +.++ ++      +++.++||++.    .++||++.+.+..+.++..+.+++.+|+|||+ .|++++.+.|.+++.+. |
T Consensus       215 ~~~~~~~------~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~~~~~~~~~~vYiCGp~-~mv~~v~~~L~~~~~~~-g  286 (307)
T PLN03116        215 KDYPDNF------RYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLK-GMMPGIQDTLKRVAEER-G  286 (307)
T ss_pred             HhCCCcE------EEEEEEccCCcccCCCccchhhHHHHHHHHHHhhhcCCcEEEEeCCH-HHHHHHHHHHHHHHHHc-C
Confidence            8754 68      89999999754    36799999988777766655557899999998 99999999999987765 4


Q ss_pred             CCHHHHHHHHHHHHHCCCEEEeec
Q 019521          316 ASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       316 ~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +   +|++.+..|+++|||++|+|
T Consensus       287 ~---~~~~~~~~l~~~~r~~~~~~  307 (307)
T PLN03116        287 E---SWEEKLSGLKKNKQWHVEVY  307 (307)
T ss_pred             c---cHHHHHHHHHHcCceEEecC
Confidence            4   36689999999999999999

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=1e-37  Score=285.81  Aligned_cols=210  Identities=30%  Similarity=0.407  Sum_probs=177.6

Q ss_pred             CCCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecC-CC
Q 019521          102 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG-SL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g-~F  178 (340)
                      ..||||+...++. ..+|+|||||+|.  ++.++|+|+.+...    ..+.|.+|+||++ +++  |+.|.+.+|.| .|
T Consensus        32 f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~----~~~~G~~S~~L~~~~~~--Gd~v~i~gp~gg~F  103 (245)
T cd06200          32 WQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA----DGGLGLGSGWLTRHAPI--GASVALRLRENPGF  103 (245)
T ss_pred             ccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC----CCCCeeechhhhhCCCC--CCEEEEEecCCCcc
Confidence            3689998777664 6789999999984  47899999876321    1235999999986 589  99999999765 78


Q ss_pred             CCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          179 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       179 ~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      .+++..+|+||||+|||||||+||++++.....    ++++||||+|+.+ |++|.+||++|.+...++      +++++
T Consensus       104 ~~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~----~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~------~~~~~  173 (245)
T cd06200         104 HLPDDGRPLILIGNGTGLAGLRSHLRARARAGR----HRNWLLFGERQAAHDFFCREELEAWQAAGHLA------RLDLA  173 (245)
T ss_pred             cCCCCCCCEEEEecCcChHHHHHHHHHHHhccC----CCeEEEEecCCccccHhHHHHHHHHHHCCCcc------eEEEE
Confidence            887556899999999999999999999886532    5799999999996 999999999998874555      88999


Q ss_pred             EecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEe
Q 019521          258 FSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE  337 (340)
Q Consensus       258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d  337 (340)
                      +|+++..++||++.+.+..+.+++++..++.||+|||+++|++++++.|.+++++.          .+++|+++|||.+|
T Consensus       174 ~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~~~~~~~----------~~~~~~~~~r~~~d  243 (245)
T cd06200         174 FSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLDEILGEE----------AVEALLAAGRYRRD  243 (245)
T ss_pred             EccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHHHHHHHH----------HHHHHHHCCCeEEe
Confidence            99987778999999998877777666567899999997789999999999999852          38899999999999


Q ss_pred             ec
Q 019521          338 AW  339 (340)
Q Consensus       338 ~w  339 (340)
                      +|
T Consensus       244 ~~  245 (245)
T cd06200         244 VY  245 (245)
T ss_pred             cC
Confidence            99

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=100.00  E-value=1.4e-36  Score=297.12  Aligned_cols=222  Identities=26%  Similarity=0.387  Sum_probs=183.4

Q ss_pred             CCCHHHHHHhcCC-------CCcceeecCCCCCCC---CCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEE
Q 019521          102 QMPIDWLVQLVPP-------LKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPA  171 (340)
Q Consensus       102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~~---~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v  171 (340)
                      ..||||+...+|.       ..+|+|||+|+|...   .+.++|+|+++.. +..+....|.+|+||+++++  ||+|.+
T Consensus       176 ~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~--Gd~v~v  252 (411)
T TIGR03224       176 VLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKK--GDKVQV  252 (411)
T ss_pred             ccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCC--cCEEEE
Confidence            4789998887764       247999999987321   1479999998864 23455668999999999999  999999


Q ss_pred             EeecCC-CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCcccc
Q 019521          172 WFQKGS-LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEA  249 (340)
Q Consensus       172 ~~~~g~-F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~  249 (340)
                      .+|.|. |.++ ...+|+||||+|||||||+||++++......+..++++||||+|+.+|++|.+||+++.+.  .+   
T Consensus       253 ~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~--~~---  327 (411)
T TIGR03224       253 IGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKD--FI---  327 (411)
T ss_pred             EeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhc--Cc---
Confidence            999996 6666 4568999999999999999999998764221123799999999999999999999999865  35   


Q ss_pred             CCCcEEEEEecCCC-CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019521          250 KGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA  327 (340)
Q Consensus       250 ~~~~~~~a~Sr~~~-~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~  327 (340)
                         ++++++||++. .++|||+.+.+..+.+++++.. ++.||+|||+ +|.+++.+.|.++..+. +++   +++++++
T Consensus       328 ---~~~~~~sr~~~~~~g~V~d~l~~~~~~v~~ll~~~~~~vYiCGp~-~M~~~v~~~L~~~~~~~-~~~---~~~~~~~  399 (411)
T TIGR03224       328 ---DINFAFSRTPEQPKRYVQDAIRERAADVAALLKDPNTYIYICGLK-GMEEGVLDAFRDVCATN-GLS---WETLEPR  399 (411)
T ss_pred             ---eEEEEeccCCccCcccHhhHHHHhHHHHHHHHhcCCcEEEEECCH-HHHHHHHHHHHHHHHHc-CcC---HHHHHHH
Confidence               67779998654 5899999999888888877754 6899999998 99999999999998765 333   5779999


Q ss_pred             HHHCCCEEEeec
Q 019521          328 LQRAGRYHVEAW  339 (340)
Q Consensus       328 l~~~~R~~~d~w  339 (340)
                      |+++|||+.|+|
T Consensus       400 l~~~~r~~~e~~  411 (411)
T TIGR03224       400 LRAEGRLHLETY  411 (411)
T ss_pred             HHHCCCeEEecC
Confidence            999999999999

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=4.3e-35  Score=274.68  Aligned_cols=202  Identities=33%  Similarity=0.510  Sum_probs=170.8

Q ss_pred             CCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEe-ecCCCCC
Q 019521          103 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF-QKGSLPR  180 (340)
Q Consensus       103 ~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~-~~g~F~l  180 (340)
                      .|||++....+. ..+|+|||+|+|.  .+.++|+|+.         .+.|.+|+||.++++  |+.|.+.+ +.|.|.+
T Consensus        85 ~pGQ~v~v~~~g~~~~R~YSias~p~--~g~l~l~Vk~---------~~~G~~S~~L~~l~~--Gd~v~v~~~~~g~F~~  151 (289)
T cd06201          85 EAGDLLGILPPGSDVPRFYSLASSSS--DGFLEICVRK---------HPGGLCSGYLHGLKP--GDTIKAFIRPNPSFRP  151 (289)
T ss_pred             CccCEEEEecCCCCCCceEecCCCCC--CCeEEEEEEe---------CCCccchhhHhhCCC--cCEEEEEeccCCCccC
Confidence            588987665554 3579999999984  4789999853         467999999999999  99999986 5778988


Q ss_pred             CCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      +...+|+||||+|||||||+||+++...   .   .+++||||+|+++ |++|++||++|.+.+.++      +++.++|
T Consensus       152 ~~~~~~lvlIAgGtGIaP~~s~l~~~~~---~---~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~------~~~~~~s  219 (289)
T cd06201         152 AKGAAPVILIGAGTGIAPLAGFIRANAA---R---RPMHLYWGGRDPASDFLYEDELDQYLADGRLT------QLHTAFS  219 (289)
T ss_pred             CCCCCCEEEEecCcCHHHHHHHHHhhhc---c---CCEEEEEEecCcccchHHHHHHHHHHHcCCCc------eEEEEEC
Confidence            7556899999999999999999998632   2   6899999999996 999999999998874455      7888999


Q ss_pred             cCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          260 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       260 r~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      |+.. ++|||+.+....+.+.+.+.+++.||+|||+ .|++++.+.|.+|+.+++ ++       +.+|+++|||.+|+|
T Consensus       220 ~~~~-~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~-~M~~~v~~~L~~i~~~~~-~~-------~~~~~~~g~~~~d~y  289 (289)
T cd06201         220 RTPD-GAYVQDRLRADAERLRRLIEDGAQIMVCGSR-AMAQGVAAVLEEILAPQP-LS-------LDELKLQGRYAEDVY  289 (289)
T ss_pred             CCCC-cccchhHHHHhHHHHHHHHHCCcEEEEECCH-HHHHHHHHHHHHHHHHcC-cC-------HHHHHHCCCEEeecC
Confidence            8754 7899999888777777667678999999998 999999999999998753 22       788899999999998

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase

Probab=99.97  E-value=3.6e-31  Score=238.60  Aligned_cols=136  Identities=51%  Similarity=0.821  Sum_probs=119.6

Q ss_pred             CCCCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCC
Q 019521           21 IHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPS  100 (340)
Q Consensus        21 ~~~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps  100 (340)
                      ..+.++|.++||+++|++|+||++ +|++.||+.||.||+|+.+|++|++|++.+|.++|.+|+.+.+++++|+|.+||+
T Consensus        84 ~~~~~~~~~~tl~~~l~~~~Di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~dil~~fps  162 (219)
T PF00667_consen   84 SVKPPFPSPITLRDLLTHYLDITS-PPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDILEDFPS  162 (219)
T ss_dssp             SCCSSSSSSEEHHHHHHHTB-TSS-B--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHHHHHSTT
T ss_pred             ccccccccceeeeeeeeeeeeccc-ccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHHHhhCcc
Confidence            346789999999999999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccc
Q 019521          101 VQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW  157 (340)
Q Consensus       101 ~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~  157 (340)
                      +++|+++|++.+|+++||+|||||+|..+++.++|+|++|+|.+..++.+.|+||+|
T Consensus       163 ~~~pl~~ll~~lp~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y  219 (219)
T PF00667_consen  163 CKPPLEELLELLPPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY  219 (219)
T ss_dssp             BTC-HHHHHHHS-B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred             cCCCHHHhhhhCCCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence            999999999999999999999999999999999999999999998999999999987

Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=99.96  E-value=5.6e-29  Score=223.51  Aligned_cols=186  Identities=26%  Similarity=0.389  Sum_probs=148.6

Q ss_pred             CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521          102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F  178 (340)
                      ..||||+...+|.   ..+|+|||+|+|.. .+.++|+|+.+         ..|.+|+||.++++  |+.|.+.+|.|.|
T Consensus        23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~---------~~G~~s~~l~~~~~--G~~v~i~gP~G~~   90 (223)
T cd00322          23 FKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIV---------PGGPFSAWLHDLKP--GDEVEVSGPGGDF   90 (223)
T ss_pred             cCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEe---------CCCchhhHHhcCCC--CCEEEEECCCccc
Confidence            3699999988875   67999999999853 47899999654         46999999999999  9999999999998


Q ss_pred             CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      .++ ...++++|||+||||||++++++++......   ++++|+||+|+.+|++|.+||+++.+.+.++      +++++
T Consensus        91 ~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~  161 (223)
T cd00322          91 FLPLEESGPVVLIAGGIGITPFRSMLRHLAADKPG---GEITLLYGARTPADLLFLDELEELAKEGPNF------RLVLA  161 (223)
T ss_pred             ccCcccCCcEEEEecCCchhHHHHHHHHHHhhCCC---CcEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEE
Confidence            765 6678999999999999999999999876544   7899999999999999999999999865677      88999


Q ss_pred             EecCCCCccchhhhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          258 FSRKQPQKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++++.....+.+..+........... ..+..+|+|||+ .|++.+++.|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~-~m~~~~~~~L~~~  213 (223)
T cd00322         162 LSRESEAKLGPGGRIDREAEILALLPDDSGALVYICGPP-AMAKAVREALVSL  213 (223)
T ss_pred             ecCCCCCCCcccceeeHHHHHHhhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence            99876543333322211111111111 237899999999 9999998888764

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=99.96  E-value=5.7e-29  Score=228.38  Aligned_cols=185  Identities=16%  Similarity=0.170  Sum_probs=144.5

Q ss_pred             CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeec-CC
Q 019521          102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK-GS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~-g~  177 (340)
                      ..||||+...++  . ...|+|||+|+|.  .+.++|+|+.+         +.|.+|+||.++++  |++|.+.+|. |.
T Consensus        31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~---------~~G~~S~~L~~l~~--Gd~v~i~gp~~g~   97 (248)
T PRK10926         31 FTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTV---------PEGKLSPRLAALKP--GDEVQVVSEAAGF   97 (248)
T ss_pred             CCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEe---------CCCCcChHHHhCCC--CCEEEEecCCCcc
Confidence            368999877663  2 2469999999984  35799998653         57999999999999  9999999986 45


Q ss_pred             CCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcC-CCccccCCCcE
Q 019521          178 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGF  254 (340)
Q Consensus       178 F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~-g~l~~~~~~~~  254 (340)
                      |.++ . ..+|++|||+|||||||+||++++......   .+++|+||+|+.+|++|++||+++.+.+ .++      ++
T Consensus        98 f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~------~v  168 (248)
T PRK10926         98 FVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLERF---KNLVLVHAARYAADLSYLPLMQELEQRYEGKL------RI  168 (248)
T ss_pred             eEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCCC---CcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCE------EE
Confidence            6665 3 347999999999999999999998755443   7899999999999999999999998764 378      89


Q ss_pred             EEEEecCCC---CccchhhhHHHh-HHHHHH-hh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          255 YVAFSRKQP---QKVYVQHKMLEQ-SQRIWN-LL-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       255 ~~a~Sr~~~---~~~yVqd~l~~~-~~~l~~-~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ..++||++.   .+++|++.+.+. ...... .+ .++..+|+|||+ +|++++.+.|.+.
T Consensus       169 ~~~~s~~~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~-~Mv~~~~~~l~~~  228 (248)
T PRK10926        169 QTVVSRETAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNP-QMVRDTQQLLKET  228 (248)
T ss_pred             EEEECCCCCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCH-HHHHHHHHHHHHh
Confidence            999998653   257787766432 112111 11 236899999999 9999998877653

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=99.96  E-value=6.6e-29  Score=224.30  Aligned_cols=181  Identities=26%  Similarity=0.348  Sum_probs=150.4

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l  180 (340)
                      ..||||+...+|....|+|||+|.|. ..+.++|+|+.         ...|.+|++|. .+++  |++|.+.+|.|.|.+
T Consensus        26 ~~pGQ~v~l~~~~~~~r~ySi~s~~~-~~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~   93 (224)
T cd06189          26 FLAGQYLDLLLDDGDKRPFSIASAPH-EDGEIELHIRA---------VPGGSFSDYVFEELKE--NGLVRIEGPLGDFFL   93 (224)
T ss_pred             cCCCCEEEEEcCCCCceeeecccCCC-CCCeEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEecCCccEEe
Confidence            47999998888877899999999985 35789999854         35699999997 5999  999999999999888


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      + ...++++|||+|||||||++++++.......   .+++|+||+|+.+|++|.+||+++.+.+.++      +++.++|
T Consensus        94 ~~~~~~~ivliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s  164 (224)
T cd06189          94 REDSDRPLILIAGGTGFAPIKSILEHLLAQGSK---RPIHLYWGARTEEDLYLDELLEAWAEAHPNF------TYVPVLS  164 (224)
T ss_pred             ccCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhccCHHHHHHHHHhCCCe------EEEEEeC
Confidence            7 5578999999999999999999999876544   7899999999999999999999998865778      8888898


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++++    .++|+++.+.+...     -..+..+|+|||+ .|++++.+.|.+.
T Consensus       165 ~~~~~~~g~~g~v~~~l~~~~~-----~~~~~~v~vCGp~-~m~~~~~~~l~~~  212 (224)
T cd06189         165 EPEEGWQGRTGLVHEAVLEDFP-----DLSDFDVYACGSP-EMVYAARDDFVEK  212 (224)
T ss_pred             CCCcCCccccccHHHHHHhhcc-----CccccEEEEECCH-HHHHHHHHHHHHc
Confidence            8643    45788876654311     0136789999999 9999998888654

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=99.96  E-value=1.3e-28  Score=230.24  Aligned_cols=179  Identities=21%  Similarity=0.352  Sum_probs=140.9

Q ss_pred             cceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcch
Q 019521          117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGC  196 (340)
Q Consensus       117 pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtGI  196 (340)
                      .|+|||+|+|. ..+.++|+|++........+...|.+|+||.++++  |++|.+.+|.|.|.+++..+|+||||+||||
T Consensus        86 ~R~ySias~p~-~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~~vlIAgGtGI  162 (283)
T cd06188          86 SRAYSLANYPA-EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKP--GDKVTASGPFGEFFIKDTDREMVFIGGGAGM  162 (283)
T ss_pred             ccccCcCCCCC-CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCC--CCEEEEECccccccccCCCCcEEEEEecccH
Confidence            49999999985 35789999976533221113457999999999999  9999999999999887556899999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC------Cccchhh
Q 019521          197 APFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQH  270 (340)
Q Consensus       197 APf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~~~yVqd  270 (340)
                      |||++|++++......  ..+++||||+|+.+|++|.+||+++.+.+.++      ++++++|++..      .++||++
T Consensus       163 tP~~s~l~~~~~~~~~--~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~~~~G~v~~  234 (283)
T cd06188         163 APLRSHIFHLLKTLKS--KRKISFWYGARSLKELFYQEEFEALEKEFPNF------KYHPVLSEPQPEDNWDGYTGFIHQ  234 (283)
T ss_pred             hHHHHHHHHHHhcCCC--CceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEEEEECCCCccCCCCCcceeecH
Confidence            9999999998764321  16899999999999999999999998765778      88888887541      3578888


Q ss_pred             hHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          271 KMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       271 ~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      .+.+..  +.... ..+..+|+|||+ +|++++.+.|.+.
T Consensus       235 ~~~~~~--~~~~~~~~~~~vyiCGP~-~m~~~~~~~l~~~  271 (283)
T cd06188         235 VLLENY--LKKHPAPEDIEFYLCGPP-PMNSAVIKMLDDL  271 (283)
T ss_pred             HHHHHH--hccCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence            765542  11111 125689999998 9999998888764

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=99.96  E-value=1.4e-28  Score=224.47  Aligned_cols=203  Identities=21%  Similarity=0.298  Sum_probs=158.7

Q ss_pred             CCCHHHHHHhcCCC----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEE-eecC
Q 019521          102 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKG  176 (340)
Q Consensus       102 ~~p~~~l~~~lp~~----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g  176 (340)
                      ..||||+...+|..    ..|+|||+|.|..  +.++|+|+.+         ..|.+|+||.++++  |+.|.+. +|.|
T Consensus        25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~---------~~G~~s~~l~~l~~--Gd~v~v~~gP~G   91 (241)
T cd06195          25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILV---------PDGPLTPRLFKLKP--GDTIYVGKKPTG   91 (241)
T ss_pred             cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEe---------cCCCCchHHhcCCC--CCEEEECcCCCC
Confidence            47899988877643    5799999999854  7899998543         56999999999999  9999999 9999


Q ss_pred             CCCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhc-CCCccccCCCc
Q 019521          177 SLPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGG  253 (340)
Q Consensus       177 ~F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~-~g~l~~~~~~~  253 (340)
                      .|.++ . ..++++|||+|||||||++++++.......   .+++|+||+|+++|++|.+||+++.+. ++++      +
T Consensus        92 ~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~  162 (241)
T cd06195          92 FLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERF---DKIVLVHGVRYAEELAYQDEIEALAKQYNGKF------R  162 (241)
T ss_pred             ceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCCC---CcEEEEEccCCHHHhhhHHHHHHHHhhcCCCE------E
Confidence            99887 4 468999999999999999999998865443   789999999999999999999999875 4678      8


Q ss_pred             EEEEEecCCCC---ccchhhhHHH-hHHHHHHh-h-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019521          254 FYVAFSRKQPQ---KVYVQHKMLE-QSQRIWNL-L-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA  327 (340)
Q Consensus       254 ~~~a~Sr~~~~---~~yVqd~l~~-~~~~l~~~-l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~  327 (340)
                      ++.++|+++..   ++|+++.+.. ......+. . .++..+|+|||+ +|++++.+.|.+.....     +..      
T Consensus       163 ~~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~G~~~-----~~~------  230 (241)
T cd06195         163 YVPIVSREKENGALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNP-QMIDDTQELLKEKGFSK-----NHR------  230 (241)
T ss_pred             EEEEECcCCccCCCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCH-HHHHHHHHHHHHcCCCc-----ccc------
Confidence            88889987653   5788887653 11221111 1 236899999999 99999988887653322     111      


Q ss_pred             HHHCCCEEEeec
Q 019521          328 LQRAGRYHVEAW  339 (340)
Q Consensus       328 l~~~~R~~~d~w  339 (340)
                       .+.++++.|.|
T Consensus       231 -~~~~~~~~E~~  241 (241)
T cd06195         231 -RKPGNITVEKY  241 (241)
T ss_pred             -CCCceEEEecC
Confidence             44577877765

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>PRK08051 fre FMN reductase; Validated

Probab=99.96  E-value=1.7e-28  Score=223.03  Aligned_cols=181  Identities=20%  Similarity=0.264  Sum_probs=146.4

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccc-ccCCCCCCcEEEEEeecCCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYIPAWFQKGSLPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v~v~~~~g~F~l  180 (340)
                      ..||||+...++....|+|||+|.|. ..+.++|+|+.+         ..|..|.++ .++++  |+.|.+.+|.|.|.+
T Consensus        30 ~~pGQ~v~l~~~~~~~r~ySias~p~-~~~~l~~~v~~~---------~~~~~~~~~~~~l~~--G~~v~v~gP~G~~~~   97 (232)
T PRK08051         30 FRAGQYLMVVMGEKDKRPFSIASTPR-EKGFIELHIGAS---------ELNLYAMAVMERILK--DGEIEVDIPHGDAWL   97 (232)
T ss_pred             cCCCCEEEEEcCCCcceeecccCCCC-CCCcEEEEEEEc---------CCCcchHHHHHHcCC--CCEEEEEcCCCceEc
Confidence            47999998888887889999999984 357899998643         335555555 58999  999999999999877


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      + +..+|+||||+||||||+++++++.......   .+++|+||+|+.+|.+|.+||+++.+.++++      +++.++|
T Consensus        98 ~~~~~~~~vliagG~GiaP~~~~l~~~~~~~~~---~~v~l~~g~r~~~~~~~~~el~~l~~~~~~~------~~~~~~~  168 (232)
T PRK08051         98 REESERPLLLIAGGTGFSYARSILLTALAQGPN---RPITLYWGGREEDHLYDLDELEALALKHPNL------HFVPVVE  168 (232)
T ss_pred             cCCCCCcEEEEecCcCcchHHHHHHHHHHhCCC---CcEEEEEEeccHHHhhhhHHHHHHHHHCCCc------EEEEEeC
Confidence            6 5568999999999999999999999876544   7899999999999999999999999876778      8888888


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHH-HHH
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF-EEI  309 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L-~~i  309 (340)
                      ++++    .++++++.+.+...   +  ..+..+|+|||+ +|++++.+.| .+.
T Consensus       169 ~~~~~~~~~~g~v~~~l~~~~~---~--~~~~~vyicGp~-~m~~~v~~~l~~~~  217 (232)
T PRK08051        169 QPEEGWQGKTGTVLTAVMQDFG---S--LAEYDIYIAGRF-EMAKIARELFCRER  217 (232)
T ss_pred             CCCCCcccceeeehHHHHhhcc---C--cccCEEEEECCH-HHHHHHHHHHHHHc
Confidence            7643    36777776643311   0  125689999999 9999998877 554

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.96  E-value=9.2e-29  Score=236.94  Aligned_cols=180  Identities=21%  Similarity=0.311  Sum_probs=149.5

Q ss_pred             CCCHHHHHHhcCCCC-cceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPLK-TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~-pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|+.. .|+|||+|+|. +.+.++|+|+.         ...|.+|+||. .+++  |+.|.+.+|.|.|.
T Consensus       137 ~~pGQ~v~l~~~~~~~~R~ySias~p~-~~~~l~~~ik~---------~~~G~~s~~L~~~l~~--G~~v~i~gP~G~f~  204 (340)
T PRK11872        137 FLPGQYARLQIPGTDDWRSYSFANRPN-ATNQLQFLIRL---------LPDGVMSNYLRERCQV--GDEILFEAPLGAFY  204 (340)
T ss_pred             cCCCCEEEEEeCCCCceeecccCCCCC-CCCeEEEEEEE---------CCCCcchhhHhhCCCC--CCEEEEEcCcceeE
Confidence            368999888888654 79999999985 35889999864         35799999996 6999  99999999999998


Q ss_pred             CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      ++...+|+||||+|||||||++|++++......   .+++||||+|+++|++|.+||++|.+.++++      +++.+.|
T Consensus       205 l~~~~~~~vliagGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~dl~~~~el~~~~~~~~~~------~~~~~~s  275 (340)
T PRK11872        205 LREVERPLVFVAGGTGLSAFLGMLDELAEQGCS---PPVHLYYGVRHAADLCELQRLAAYAERLPNF------RYHPVVS  275 (340)
T ss_pred             eCCCCCcEEEEeCCcCccHHHHHHHHHHHcCCC---CcEEEEEecCChHHhccHHHHHHHHHHCCCc------EEEEEEe
Confidence            874458999999999999999999998876544   6899999999999999999999998876888      8888888


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++++    .+++|++.+.+.      .+. .+..+|+|||+ .|++++.+.|.+.
T Consensus       276 ~~~~~~~g~~g~v~~~l~~~------~l~~~~~~vy~CGp~-~mv~~~~~~L~~~  323 (340)
T PRK11872        276 KASADWQGKRGYIHEHFDKA------QLRDQAFDMYLCGPP-PMVEAVKQWLDEQ  323 (340)
T ss_pred             CCCCcCCCceeeccHHHHHh------hcCcCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence            7543    467888776543      122 24689999999 9999998888654

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=99.96  E-value=1.7e-28  Score=223.70  Aligned_cols=182  Identities=20%  Similarity=0.315  Sum_probs=149.4

Q ss_pred             CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|.. ..|+|||+|.|.. .+.++|+|+.         .+.|.+|+||. .+++  |++|.+.+|.|.|.
T Consensus        36 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~  103 (238)
T cd06211          36 FQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRL---------VPGGIATTYVHKQLKE--GDELEISGPYGDFF  103 (238)
T ss_pred             cCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEE---------CCCCcchhhHhhcCCC--CCEEEEECCccceE
Confidence            47999998888866 6899999999853 5789999854         35799999997 7999  99999999999998


Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      ++ ...+++||||+||||||+++++++.......   .+++|+||+|+.+|++|.+||+++.+.+.++      +++.++
T Consensus       104 ~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~  174 (238)
T cd06211         104 VRDSDQRPIIFIAGGSGLSSPRSMILDLLERGDT---RKITLFFGARTRAELYYLDEFEALEKDHPNF------KYVPAL  174 (238)
T ss_pred             ecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcCCC---CcEEEEEecCChhhhccHHHHHHHHHhCCCe------EEEEEE
Confidence            77 5558999999999999999999998876544   6899999999999999999999998765678      888889


Q ss_pred             ecCCC------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          259 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       259 Sr~~~------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ||+..      .++|+++.+.+....    -.++..+|+|||+ .|++++.+.|.+.
T Consensus       175 s~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyvCGp~-~m~~~~~~~L~~~  226 (238)
T cd06211         175 SREPPESNWKGFTGFVHDAAKKHFKN----DFRGHKAYLCGPP-PMIDACIKTLMQG  226 (238)
T ss_pred             CCCCCCcCcccccCcHHHHHHHhccc----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence            98642      357777765543110    1136799999999 9999998888764

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=99.96  E-value=1.7e-28  Score=222.10  Aligned_cols=179  Identities=23%  Similarity=0.339  Sum_probs=148.8

Q ss_pred             CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|.. ..|+|||+|.|..  +.++|+|+.         ...|.+|+||.+ +++  |+.|.+.+|.|.|.
T Consensus        31 ~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~   97 (228)
T cd06209          31 FLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRL---------LPGGAMSSYLRDRAQP--GDRLTLTGPLGSFY   97 (228)
T ss_pred             cCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEE---------cCCCcchhhHHhccCC--CCEEEEECCcccce
Confidence            36899988888765 4899999998854  789999854         357999999987 999  99999999999987


Q ss_pred             CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      ++...++++|||+||||||+++++++.......   ++++|+||+|+.+|++|.++|+++.+.++++      +++.++|
T Consensus        98 ~~~~~~~~vlia~GtGIaP~~~ll~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~s  168 (228)
T cd06209          98 LREVKRPLLMLAGGTGLAPFLSMLDVLAEDGSA---HPVHLVYGVTRDADLVELDRLEALAERLPGF------SFRTVVA  168 (228)
T ss_pred             ecCCCCeEEEEEcccCHhHHHHHHHHHHhcCCC---CcEEEEEecCCHHHhccHHHHHHHHHhCCCe------EEEEEEc
Confidence            764458999999999999999999998876543   7899999999999999999999998766778      8888999


Q ss_pred             cCCC---CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~~---~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++..   .++|+++.+.+.      .+. .+..+|+|||+ .|++++++.|.+.
T Consensus       169 ~~~~~~~~~g~v~~~~~~~------~~~~~~~~v~icGp~-~m~~~~~~~l~~~  215 (228)
T cd06209         169 DPDSWHPRKGYVTDHLEAE------DLNDGDVDVYLCGPP-PMVDAVRSWLDEQ  215 (228)
T ss_pred             CCCccCCCcCCccHHHHHh------hccCCCcEEEEeCCH-HHHHHHHHHHHHc
Confidence            8654   456888766553      122 35789999998 9999998888653

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=99.96  E-value=1.7e-28  Score=222.58  Aligned_cols=184  Identities=18%  Similarity=0.191  Sum_probs=147.9

Q ss_pred             CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|.. .+|+|||+|.|.. .+.++|+|+.         ...|.+|.||.+ +++  |+.|.+.+|.|.|.
T Consensus        24 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~---------~~~G~~s~~l~~~~~~--g~~v~v~gP~G~~~   91 (232)
T cd06190          24 FLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKR---------KPGGAASNALFDNLEP--GDELELDGPYGLAY   91 (232)
T ss_pred             cCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEE---------cCCCcchHHHhhcCCC--CCEEEEECCcccce
Confidence            47899999988877 7899999998853 5789999854         356999999985 799  99999999999987


Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      ++ +..++++|||+||||||+++++++....... +..+++|+||+|+.+|++|.+||+++.+...++      +++.++
T Consensus        92 ~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~-~~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~  164 (232)
T cd06190          92 LRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYL-SDRPVDLFYGGRTPSDLCALDELSALVALGARL------RVTPAV  164 (232)
T ss_pred             ecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccC-CCCeEEEEEeecCHHHHhhHHHHHHHHHhCCCE------EEEEEe
Confidence            76 5567999999999999999999998875210 127899999999999999999999998864567      788888


Q ss_pred             ecCCC--------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          259 SRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       259 Sr~~~--------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      |++..        .++++++.+.+....    ...+..||+|||+ .|.+++.+.|.+.
T Consensus       165 s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~~  218 (232)
T cd06190         165 SDAGSGSAAGWDGPTGFVHEVVEATLGD----RLAEFEFYFAGPP-PMVDAVQRMLMIE  218 (232)
T ss_pred             CCCCCCcCCCccCCcCcHHHHHHhhccC----CccccEEEEECCH-HHHHHHHHHHHHh
Confidence            87643        246777665443111    1236899999998 8998888777664

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.96  E-value=1.6e-28  Score=240.79  Aligned_cols=180  Identities=20%  Similarity=0.337  Sum_probs=145.7

Q ss_pred             CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcc
Q 019521          116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG  195 (340)
Q Consensus       116 ~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtG  195 (340)
                      ..|+|||+|.|.. .+.++|+|+++.+....++.+.|.+|+||.++++  ||.|.+.+|.|.|.+++..+|+||||+|||
T Consensus       209 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~~~~~~~~ivlIAgGtG  285 (409)
T PRK05464        209 VIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG  285 (409)
T ss_pred             eeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCC--CCEEEEEccccCcEecCCCceEEEEEeccC
Confidence            5799999999853 5789999998766655566778999999999999  999999999999987655689999999999


Q ss_pred             hhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC------Cccchh
Q 019521          196 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQ  269 (340)
Q Consensus       196 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~~~yVq  269 (340)
                      ||||+||+++.......  ..+++||||+|+.+|++|.+||+++.+.++++      ++++++|++..      .+++++
T Consensus       286 IaP~~sml~~~l~~~~~--~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v~  357 (409)
T PRK05464        286 MAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYVEDFDQLAAENPNF------KWHVALSDPLPEDNWTGYTGFIH  357 (409)
T ss_pred             hhHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHHHHHhCCCe------EEEEEEcCCCCCCCCCCccceeC
Confidence            99999999987765322  26899999999999999999999998776888      88888887532      357788


Q ss_pred             hhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          270 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       270 d~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +.+.+..  +.+.. ..+..+|+|||+ +|++++.+.|.+.
T Consensus       358 ~~l~~~~--l~~~~~~~~~~vyiCGP~-~m~~av~~~L~~~  395 (409)
T PRK05464        358 NVLYENY--LKDHEAPEDCEYYMCGPP-MMNAAVIKMLKDL  395 (409)
T ss_pred             HHHHHhh--hhhcCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence            7765431  11111 136789999998 9999998887654

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=99.95  E-value=3e-28  Score=238.18  Aligned_cols=179  Identities=18%  Similarity=0.240  Sum_probs=144.2

Q ss_pred             CCCHHHHHHhcC--C--C-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeec
Q 019521          102 QMPIDWLVQLVP--P--L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK  175 (340)
Q Consensus       102 ~~p~~~l~~~lp--~--~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~  175 (340)
                      ..||||+...++  +  . .+|+|||+|+|.  .+.++|+|+.         ...|.+|+||.+ +++  |+.|.+.+|.
T Consensus       185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~  251 (399)
T PRK13289        185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKR---------EAGGKVSNYLHDHVNV--GDVLELAAPA  251 (399)
T ss_pred             CCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEE---------CCCCeehHHHhhcCCC--CCEEEEEcCc
Confidence            368999888764  2  2 359999999985  3689999853         356999999985 999  9999999999


Q ss_pred             CCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcE
Q 019521          176 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGF  254 (340)
Q Consensus       176 g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~  254 (340)
                      |.|.++ ...+|+||||+||||||++||++++......   .+++||||+|+.+|++|++||+++.+.++++      ++
T Consensus       252 G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~------~~  322 (399)
T PRK13289        252 GDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQPK---RPVHFIHAARNGGVHAFRDEVEALAARHPNL------KA  322 (399)
T ss_pred             cccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCChhhchHHHHHHHHHHhCCCc------EE
Confidence            999987 5678999999999999999999998876544   7899999999999999999999998875688      89


Q ss_pred             EEEEecCCCC---------ccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          255 YVAFSRKQPQ---------KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       255 ~~a~Sr~~~~---------~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +.++|++...         .++++.      +.+.+.+. .+..+|+|||+ .|++++.+.|.+.
T Consensus       323 ~~~~s~~~~~~~~~~~~~~~g~i~~------~~l~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~  380 (399)
T PRK13289        323 HTWYREPTEQDRAGEDFDSEGLMDL------EWLEAWLPDPDADFYFCGPV-PFMQFVAKQLLEL  380 (399)
T ss_pred             EEEECCCccccccCCcccccCcccH------HHHHhhCCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence            9999985431         133332      12222332 37899999998 9999998887654

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.95  E-value=2.3e-28  Score=234.20  Aligned_cols=180  Identities=19%  Similarity=0.299  Sum_probs=149.7

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l  180 (340)
                      ..||||+...+|....|+|||+|+|.. .+.++|+|+.         .+.|.+|+||. .+++  |+.|.+.+|.|.|.+
T Consensus       132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~---------~~~G~~s~~l~~~l~~--G~~v~v~gP~G~~~~  199 (339)
T PRK07609        132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRH---------MPGGVFTDHVFGALKE--RDILRIEGPLGTFFL  199 (339)
T ss_pred             cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEe---------cCCCccHHHHHHhccC--CCEEEEEcCceeEEe
Confidence            368999988888777899999999853 5789999854         46799999996 6999  999999999999988


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      + ...+|+||||+|||||||+||++++......   .+++||||+|+.+|+++.++|++|.+.++++      +++.++|
T Consensus       200 ~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~~~---~~i~l~~g~r~~~dl~~~e~l~~~~~~~~~~------~~~~~~s  270 (339)
T PRK07609        200 REDSDKPIVLLASGTGFAPIKSIVEHLRAKGIQ---RPVTLYWGARRPEDLYLSALAEQWAEELPNF------RYVPVVS  270 (339)
T ss_pred             cCCCCCCEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEecCChHHhccHHHHHHHHHhCCCe------EEEEEec
Confidence            7 5678999999999999999999999876544   7899999999999998899999998765788      8888999


Q ss_pred             cCC------CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          260 RKQ------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       260 r~~------~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                      |+.      ..++|+++.+.+....     ..+..+|+|||+ .|++.+.+.|.+
T Consensus       271 ~~~~~~~~~g~~G~v~~~~~~~~~~-----~~~~~vy~CGp~-~m~~~~~~~l~~  319 (339)
T PRK07609        271 DALDDDAWTGRTGFVHQAVLEDFPD-----LSGHQVYACGSP-VMVYAARDDFVA  319 (339)
T ss_pred             CCCCCCCccCccCcHHHHHHhhccc-----ccCCEEEEECCH-HHHHHHHHHHHH
Confidence            842      1367888776543111     136789999998 999998888766

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.95  E-value=2.4e-28  Score=233.43  Aligned_cols=183  Identities=15%  Similarity=0.234  Sum_probs=144.6

Q ss_pred             CCCHHHHHHhcCC--CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCC
Q 019521          102 QMPIDWLVQLVPP--LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp~--~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F  178 (340)
                      ..||||+...++.  ...|+|||+|.|.. .+.++|+|+.         ...|.+|+||. ++++  |++|.+.+|.|.|
T Consensus        37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f  104 (332)
T PRK10684         37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRR---------IDDGVGSQWLTRDVKR--GDYLWLSDAMGEF  104 (332)
T ss_pred             cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEeCCcccc
Confidence            4699998887764  24699999999853 4679999853         46799999996 7999  9999999999999


Q ss_pred             CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      .++ ...+++||||+|||||||+||+++.......   .+++|+||+|+.+|++|.+||+++.+.++++      ++++.
T Consensus       105 ~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~~~---~~v~l~y~~r~~~~~~~~~el~~l~~~~~~~------~~~~~  175 (332)
T PRK10684        105 TCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRPQ---ADVQVIFNVRTPQDVIFADEWRQLKQRYPQL------NLTLV  175 (332)
T ss_pred             ccCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CCEEEEEeCCChHHhhhHHHHHHHHHHCCCe------EEEEE
Confidence            987 5668999999999999999999998765444   7899999999999999999999998876777      77777


Q ss_pred             EecCCCCccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          258 FSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      .+++.. +++.+..+.+.  .+.+.+.  .+..+|+|||+ +|++.+.+.|.+.
T Consensus       176 ~~~~~~-~~~~~grl~~~--~l~~~~~~~~~~~vyiCGP~-~m~~~v~~~l~~~  225 (332)
T PRK10684        176 AENNAT-EGFIAGRLTRE--LLQQAVPDLASRTVMTCGPA-PYMDWVEQEVKAL  225 (332)
T ss_pred             eccCCC-CCccccccCHH--HHHHhcccccCCEEEEECCH-HHHHHHHHHHHHc
Confidence            665432 34444444321  1112222  26789999998 9999988877664

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.95  E-value=8e-28  Score=235.59  Aligned_cols=180  Identities=21%  Similarity=0.356  Sum_probs=143.0

Q ss_pred             CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcc
Q 019521          116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG  195 (340)
Q Consensus       116 ~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtG  195 (340)
                      ..|+|||+|+|.. .+.++|+|+++.+....++.+.|.+|+||.++++  ||.|.+.+|.|.|.+.+..+|+||||+|||
T Consensus       205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f~l~~~~~~lvlIAgGtG  281 (405)
T TIGR01941       205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG  281 (405)
T ss_pred             cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCC--cCEEEEEeccCCCeecCCCCCEEEEecCcC
Confidence            4699999999853 5789999988754433334678999999999999  999999999999987655689999999999


Q ss_pred             hhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC------Cccchh
Q 019521          196 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQ  269 (340)
Q Consensus       196 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~------~~~yVq  269 (340)
                      ||||++|+++.......  ..+++||||+|+++|++|.+||+++.+.++++      ++++++|++..      .+++++
T Consensus       282 IaP~lsmi~~~l~~~~~--~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~g~~G~v~  353 (405)
T TIGR01941       282 MAPMRSHIFDQLKRLKS--KRKISFWYGARSLREMFYQEDFDQLEAENPNF------VWHVALSDPQPEDNWTGYTGFIH  353 (405)
T ss_pred             cchHHHHHHHHHhcCCC--CCeEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEEEeCCCCccCCCCCccceeC
Confidence            99999999987764321  26899999999999999999999998776888      88888887532      356787


Q ss_pred             hhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          270 HKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       270 d~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +.+.+..  +.+.. ..+..+|+|||+ +|++++.+.|.+.
T Consensus       354 ~~l~~~~--l~~~~~~~~~~vylCGP~-~m~~av~~~L~~~  391 (405)
T TIGR01941       354 NVLYENY--LKDHDAPEDCEFYMCGPP-MMNAAVIKMLEDL  391 (405)
T ss_pred             HHHHHhh--hcccCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence            7665331  11111 136789999998 9999998887654

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=99.95  E-value=8.5e-28  Score=216.64  Aligned_cols=181  Identities=21%  Similarity=0.250  Sum_probs=148.4

Q ss_pred             CCCHHHHHHhcCCCC--cceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCC
Q 019521          102 QMPIDWLVQLVPPLK--TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~--pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F  178 (340)
                      ..||||+...+|...  .|+|||+|.|.+ .+.++|+|+.         ...|.+|+||.+ +++  |+.|.+.+|.|.|
T Consensus        24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~   91 (224)
T cd06187          24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRA---------VPGGRVSNALHDELKV--GDRVRLSGPYGTF   91 (224)
T ss_pred             cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEe---------CCCCcchHHHhhcCcc--CCEEEEeCCccce
Confidence            368999888887654  799999999854 4789999853         246999999987 999  9999999999998


Q ss_pred             CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      .++ +..++++|||+|||||||+++++++......   .+++|+|++|+.+|++|.++|+.+.+.+.++      ++..+
T Consensus        92 ~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~~~---~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~  162 (224)
T cd06187          92 YLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRGEP---RPVHLFFGARTERDLYDLEGLLALAARHPWL------RVVPV  162 (224)
T ss_pred             EecCCCCCCEEEEecCcCHHHHHHHHHHHHhcCCC---CCEEEEEecCChhhhcChHHHHHHHHhCCCe------EEEEE
Confidence            887 5468999999999999999999998876543   7899999999999999999999998765677      78778


Q ss_pred             EecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          258 FSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       258 ~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +++++.    .++|+++.+.+...     -.++..+|+|||+ .|++++++.|++.
T Consensus       163 ~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~v~vcGp~-~~~~~v~~~l~~~  212 (224)
T cd06187         163 VSHEEGAWTGRRGLVTDVVGRDGP-----DWADHDIYICGPP-AMVDATVDALLAR  212 (224)
T ss_pred             eCCCCCccCCCcccHHHHHHHhcc-----ccccCEEEEECCH-HHHHHHHHHHHHc
Confidence            887543    46788877654311     0136899999998 9999988888653

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=99.95  E-value=7.4e-28  Score=218.96  Aligned_cols=182  Identities=17%  Similarity=0.224  Sum_probs=147.9

Q ss_pred             CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|.. .+|+|||+|.|.. .+.++|+|+.         ...|.+|+||.+ +++  |+.|.+.+|.|.|.
T Consensus        35 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~f~  102 (236)
T cd06210          35 FVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRL---------LPGGAFSTYLETRAKV--GQRLNLRGPLGAFG  102 (236)
T ss_pred             cCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEE---------cCCCccchhhhhCcCC--CCEEEEecCcceee
Confidence            46899998877753 5899999999853 4789999854         346999999986 999  99999999999998


Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      ++ ...++++|||+||||||++++++++......   .+++||||+|+.+|.+|.++|+++.+.++++      +++.++
T Consensus       103 l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~  173 (236)
T cd06210         103 LRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGEP---QEARLFFGVNTEAELFYLDELKRLADSLPNL------TVRICV  173 (236)
T ss_pred             ecCCCCccEEEEccCcchhHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhhHHHHHHHHHhCCCe------EEEEEE
Confidence            87 5567999999999999999999998876544   7899999999999999999999999776788      888898


Q ss_pred             ecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          259 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       259 Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ||+..    ..+++++.+.+....    ......+|+|||+ .|++++++.|.+.
T Consensus       174 s~~~~~~~~~~g~~~~~l~~~l~~----~~~~~~vyicGp~-~m~~~~~~~l~~~  223 (236)
T cd06210         174 WRPGGEWEGYRGTVVDALREDLAS----SDAKPDIYLCGPP-GMVDAAFAAAREA  223 (236)
T ss_pred             cCCCCCcCCccCcHHHHHHHhhcc----cCCCcEEEEeCCH-HHHHHHHHHHHHc
Confidence            87543    356776655433111    1235789999998 9999998888753

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=99.95  E-value=1e-27  Score=224.85  Aligned_cols=179  Identities=18%  Similarity=0.209  Sum_probs=143.0

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l  180 (340)
                      ..||||+...+|....|+|||+|+|. ..+.++|+|+.           .|.+|+||.++++  |+.|.+.+|.|. |.+
T Consensus        38 ~~pGQ~v~l~~~~~~~~pySias~p~-~~~~l~l~Ik~-----------~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~  103 (289)
T PRK08345         38 FKPGQFVQVTIPGVGEVPISICSSPT-RKGFFELCIRR-----------AGRVTTVIHRLKE--GDIVGVRGPYGNGFPV  103 (289)
T ss_pred             cCCCCEEEEEcCCCCceeeEecCCCC-CCCEEEEEEEe-----------CChHHHHHHhCCC--CCEEEEeCCCCCCCCc
Confidence            36999998888876679999999985 35789999853           3899999999999  999999999997 666


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      + ...+|++|||+|||||||++|++++......  ..+++|+||+|+.+|++|++||+++.+.++++      +++.++|
T Consensus       104 ~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~--~~~v~l~~~~r~~~d~~~~deL~~l~~~~~~~------~~~~~~s  175 (289)
T PRK08345        104 DEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWK--YGNITLIYGAKYYEDLLFYDELIKDLAEAENV------KIIQSVT  175 (289)
T ss_pred             ccccCceEEEEecccchhHHHHHHHHHHhcCCC--CCcEEEEEecCCHHHhhHHHHHHHHHhcCCCE------EEEEEec
Confidence            5 4457999999999999999999998875421  27899999999999999999999997765788      8888899


Q ss_pred             cCCCC---------------ccchhhhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQPQ---------------KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~~~---------------~~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +++..               ++++++.+.+.      .. .++..+|+|||+ .|++++.+.|.+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~------~~~~~~~~vyiCGP~-~m~~~v~~~L~~~  234 (289)
T PRK08345        176 RDPEWPGCHGLPQGFIERVCKGVVTDLFREA------NTDPKNTYAAICGPP-VMYKFVFKELINR  234 (289)
T ss_pred             CCCCCcCccccccccccccccCchhhhhhhc------CCCccccEEEEECCH-HHHHHHHHHHHHc
Confidence            85432               23333333221      11 125789999999 9999998888764

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.95  E-value=9.1e-28  Score=217.89  Aligned_cols=181  Identities=24%  Similarity=0.381  Sum_probs=147.4

Q ss_pred             CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|.. ..|+|||+|.|.. .+.++|+|+.         ...|.+|+||.+ +++  |++|.+.+|.|.|.
T Consensus        30 ~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~   97 (232)
T cd06212          30 FFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKK---------YPGGLFSSFLDDGLAV--GDPVTVTGPYGTCT   97 (232)
T ss_pred             cCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCchhhHHhhcCCC--CCEEEEEcCcccce
Confidence            36999988888754 6899999999853 4789999854         357999999985 999  99999999999998


Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      ++ ...+++||||+||||||+++++++.......   .+++|+||+|+.+|++|.+||+++.+.+.++      ++..++
T Consensus        98 ~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~  168 (232)
T cd06212          98 LRESRDRPIVLIGGGSGMAPLLSLLRDMAASGSD---RPVRFFYGARTARDLFYLEEIAALGEKIPDF------TFIPAL  168 (232)
T ss_pred             ecCCCCCcEEEEecCcchhHHHHHHHHHHhcCCC---CcEEEEEeccchHHhccHHHHHHHHHhCCCE------EEEEEE
Confidence            77 5568999999999999999999999876544   7899999999999999999999998765778      788888


Q ss_pred             ecCCC------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          259 SRKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       259 Sr~~~------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      |++..      ..+++++.+.+....    + ++..+|+|||+ .|++++.+.|.+.
T Consensus       169 s~~~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~v~~CGp~-~~~~~v~~~l~~~  219 (232)
T cd06212         169 SESPDDEGWSGETGLVTEVVQRNEAT----L-AGCDVYLCGPP-PMIDAALPVLEMS  219 (232)
T ss_pred             CCCCCCCCCcCCcccHHHHHHhhccC----c-cCCEEEEECCH-HHHHHHHHHHHHc
Confidence            88542      246776655432111    1 36789999999 9999988877654

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=99.95  E-value=9.5e-28  Score=217.65  Aligned_cols=178  Identities=17%  Similarity=0.308  Sum_probs=142.8

Q ss_pred             CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~  177 (340)
                      ..||||+...++  . ..+|+|||+|.|.  .+.++|+|+.         ...|.+|+||. ++++  |+.|.+.+|.|.
T Consensus        28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~   94 (231)
T cd06191          28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKR---------VPGGRVSNYLREHIQP--GMTVEVMGPQGH   94 (231)
T ss_pred             CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEE---------CCCCccchHHHhcCCC--CCEEEEeCCccc
Confidence            369999887764  2 3579999999985  5889999854         35699999998 6999  999999999999


Q ss_pred             CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      |.++ ....+++|||+||||||+++++++.......   .++.|+||+|+++|++|.+||+++.+.++++      +++.
T Consensus        95 f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~  165 (231)
T cd06191          95 FVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTAPE---SDFTLIHSARTPADMIFAQELRELADKPQRL------RLLC  165 (231)
T ss_pred             eEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCCCe------EEEE
Confidence            9887 5568999999999999999999998876444   7899999999999999999999998765788      8999


Q ss_pred             EEecCCCC------ccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHH
Q 019521          257 AFSRKQPQ------KVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       257 a~Sr~~~~------~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                      ++||+...      ++++.+.+.+.      ++.  .+..+|+|||+ .|++++++.|.+
T Consensus       166 ~~s~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~vyicGp~-~mv~~~~~~l~~  218 (231)
T cd06191         166 IFTRETLDSDLLHGRIDGEQSLGAA------LIPDRLEREAFICGPA-GMMDAVETALKE  218 (231)
T ss_pred             EECCCCCCccccCCcccccHHHHHH------hCccccCCeEEEECCH-HHHHHHHHHHHH
Confidence            99986432      23333322221      222  25799999999 999998887755

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=99.95  E-value=2.2e-27  Score=214.74  Aligned_cols=178  Identities=20%  Similarity=0.338  Sum_probs=145.0

Q ss_pred             CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCCC
Q 019521          103 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  180 (340)
Q Consensus       103 ~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l  180 (340)
                      .||||+...+|.. ..|+|||+|+|.. .+.++|+|+.         ...|.+|+||. .+++  |+.|.+.+|.|.|.+
T Consensus        29 ~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~---------~~~G~~s~~l~~~l~~--G~~v~i~gP~G~~~~   96 (227)
T cd06213          29 KAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRK---------VPGGAFSGWLFGADRT--GERLTVRGPFGDFWL   96 (227)
T ss_pred             CCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEE---------CCCCcchHHHHhcCCC--CCEEEEeCCCcceEe
Confidence            5899988887765 4899999999853 5789999854         35699999995 6899  999999999999988


Q ss_pred             CCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhc-CCCccccCCCcEEEEEe
Q 019521          181 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~-~g~l~~~~~~~~~~a~S  259 (340)
                      ++..+++||||+|||||||+++++++......   .+++++||+|+++|.+|.+||+++.+. ..++      +++.++|
T Consensus        97 ~~~~~~~lliagG~GiaP~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~~~~~s  167 (227)
T cd06213          97 RPGDAPILCIAGGSGLAPILAILEQARAAGTK---RDVTLLFGARTQRDLYALDEIAAIAARWRGRF------RFIPVLS  167 (227)
T ss_pred             CCCCCcEEEEecccchhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhccHHHHHHHHHhccCCe------EEEEEec
Confidence            74457999999999999999999999876544   689999999999999999999999864 2567      7888888


Q ss_pred             cCCC------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQP------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~~------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++..      .++++++.+.+.       +..+..+|+|||+ .|++++++.|.+.
T Consensus       168 ~~~~~~~~~g~~g~v~~~l~~~-------~~~~~~v~~CGp~-~~~~~~~~~l~~~  215 (227)
T cd06213         168 EEPADSSWKGARGLVTEHIAEV-------LLAATEAYLCGPP-AMIDAAIAVLRAL  215 (227)
T ss_pred             CCCCCCCccCCcccHHHHHHhh-------ccCCCEEEEECCH-HHHHHHHHHHHHc
Confidence            7642      235776655432       2347899999998 9999988887663

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=99.95  E-value=5.9e-27  Score=211.10  Aligned_cols=181  Identities=21%  Similarity=0.257  Sum_probs=144.3

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGSLPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~F~l  180 (340)
                      ..||||+...+|....|+|||+|+|.. .+.++|+|+.         ...|.+|.||.+ +++  |+.|.+.+|.|.|.+
T Consensus        24 ~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~~~~   91 (222)
T cd06194          24 YLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRR---------KPNGAFSGWLGEEARP--GHALRLQGPFGQAFY   91 (222)
T ss_pred             cCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEe---------ccCCccchHHHhccCC--CCEEEEecCcCCeec
Confidence            368999988888878899999999854 3789999853         356999999987 699  999999999998766


Q ss_pred             C--CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          181 P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       181 ~--~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      .  ...++++|||+||||||++++++++......   .+++|+||+|+.+|++|.+||+++.+.++++      +++.+.
T Consensus        92 ~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~  162 (222)
T cd06194          92 RPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQ---GEIRLVHGARDPDDLYLHPALLWLAREHPNF------RYIPCV  162 (222)
T ss_pred             cCCCCCCCEEEEecCcchhhHHHHHHHHHhcCCC---ccEEEEEecCChhhccCHHHHHHHHHHCCCe------EEEEEE
Confidence            4  5567999999999999999999998876544   7899999999999999999999998755778      888888


Q ss_pred             ecCCCCc-c-chhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          259 SRKQPQK-V-YVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       259 Sr~~~~~-~-yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++++... + ++.+ +.+.   +. ...++..+|+|||+ .|++++++.|.+.
T Consensus       163 ~~~~~~~~~~~~~~-~~~~---~~-~~~~~~~vyicGp~-~m~~~~~~~L~~~  209 (222)
T cd06194         163 SEGSQGDPRVRAGR-IAAH---LP-PLTRDDVVYLCGAP-SMVNAVRRRAFLA  209 (222)
T ss_pred             ccCCCCCcccccch-hhhh---hc-cccCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence            8865432 1 1221 1111   11 12347899999998 9999998888764

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>PRK05713 hypothetical protein; Provisional

Probab=99.94  E-value=4.8e-27  Score=222.58  Aligned_cols=175  Identities=18%  Similarity=0.165  Sum_probs=139.8

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC-CCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-SLPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~F~l  180 (340)
                      ..||||+...++....|+|||+|.|.. .+.++|+|+.         ...|.+|.||.++++  |++|.+.+|.| .|.+
T Consensus       119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~---------~~~G~~s~~l~~l~~--Gd~v~l~~p~gg~~~~  186 (312)
T PRK05713        119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDC---------SRPGAFCDAARQLQV--GDLLRLGELRGGALHY  186 (312)
T ss_pred             cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEE---------cCCCccchhhhcCCC--CCEEEEccCCCCceEe
Confidence            368999887777667899999999853 5789999854         357999999999999  99999999987 4555


Q ss_pred             C-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          181 P-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       181 ~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      + + ..+|+||||||||||||+||+++.......   .+++|+||+|+.+|++|.+||++|.+.++++      ++..+.
T Consensus       187 ~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~------~~~~~~  257 (312)
T PRK05713        187 DPDWQERPLWLLAAGTGLAPLWGILREALRQGHQ---GPIRLLHLARDSAGHYLAEPLAALAGRHPQL------SVELVT  257 (312)
T ss_pred             cCCCCCCcEEEEecCcChhHHHHHHHHHHhcCCC---CcEEEEEEcCchHHhhhHHHHHHHHHHCCCc------EEEEEE
Confidence            5 3 568999999999999999999998876544   7899999999999999999999998766788      777666


Q ss_pred             ecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       259 Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++      ++++.+.+.    . ....+..+|+|||+ +|++++.+.|.+.
T Consensus       258 ~~------~~~~~l~~~----~-~~~~~~~vyiCGp~-~mv~~~~~~L~~~  296 (312)
T PRK05713        258 AA------QLPAALAEL----R-LVSRQTMALLCGSP-ASVERFARRLYLA  296 (312)
T ss_pred             Cc------chhhhhhhc----c-CCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence            53      244433221    0 01235789999999 9999998888653

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=99.94  E-value=1e-26  Score=213.01  Aligned_cols=179  Identities=20%  Similarity=0.314  Sum_probs=143.4

Q ss_pred             CCCHHHHHHhcC--C---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeec
Q 019521          102 QMPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK  175 (340)
Q Consensus       102 ~~p~~~l~~~lp--~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~  175 (340)
                      ..||||+...++  .   ...|+|||+|.|..  +.++|+|+.         ...|.+|+||.+ +++  |++|.+.+|.
T Consensus        37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~  103 (247)
T cd06184          37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKR---------EPGGLVSNYLHDNVKV--GDVLEVSAPA  103 (247)
T ss_pred             CCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCC
Confidence            468999877764  2   46899999999853  588888753         356999999987 999  9999999999


Q ss_pred             CCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcE
Q 019521          176 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGF  254 (340)
Q Consensus       176 g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~  254 (340)
                      |.|.++ ...++++|||+|||||||+++++++......   .+++||||+|++++.+|.++|+++.+.+.++      ++
T Consensus       104 G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~  174 (247)
T cd06184         104 GDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEGPG---RPVTFIHAARNSAVHAFRDELEELAARLPNL------KL  174 (247)
T ss_pred             CceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCCC---CcEEEEEEcCchhhHHHHHHHHHHHhhCCCe------EE
Confidence            999887 4678999999999999999999999876444   7899999999999999999999998765778      89


Q ss_pred             EEEEecCCCC--------ccchhhhHHHhHHHHHH-hhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          255 YVAFSRKQPQ--------KVYVQHKMLEQSQRIWN-LLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       255 ~~a~Sr~~~~--------~~yVqd~l~~~~~~l~~-~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +.++|++...        .++++..      .+.+ ...++..+|+|||+ .|++++++.|.+.
T Consensus       175 ~~~~s~~~~~~~~~~~~~~g~~~~~------~l~~~~~~~~~~v~icGp~-~m~~~v~~~l~~~  231 (247)
T cd06184         175 HVFYSEPEAGDREEDYDHAGRIDLA------LLRELLLPADADFYLCGPV-PFMQAVREGLKAL  231 (247)
T ss_pred             EEEECCCCcccccccccccCccCHH------HHhhccCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence            9999986432        2333321      2222 12347899999999 9999988888653

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.94  E-value=8.3e-27  Score=211.16  Aligned_cols=180  Identities=22%  Similarity=0.328  Sum_probs=142.0

Q ss_pred             CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~  177 (340)
                      ..||||+...+|.   ...|+|||+|.|. +.+.++|+|+.         ...|.+|.||. .+++  |+.+.+.+|.|.
T Consensus        28 ~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~---------~~~G~~s~~l~~~~~~--G~~v~i~gP~G~   95 (231)
T cd06215          28 YKPGQFLTLELEIDGETVYRAYTLSSSPS-RPDSLSITVKR---------VPGGLVSNWLHDNLKV--GDELWASGPAGE   95 (231)
T ss_pred             cCCCCeEEEEEecCCCeEEEeeecccCCC-CCCcEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCcce
Confidence            4789998777652   2479999999985 35679999854         35699999996 7999  999999999999


Q ss_pred             CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      |.++ ...+++||||+||||||+++++++.......   .+++|||++|+++|++|.++|+++.+.+.++      ++..
T Consensus        96 f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~  166 (231)
T cd06215          96 FTLIDHPADKLLLLSAGSGITPMMSMARWLLDTRPD---ADIVFIHSARSPADIIFADELEELARRHPNF------RLHL  166 (231)
T ss_pred             eEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcCCC---CcEEEEEecCChhhhhHHHHHHHHHHHCCCe------EEEE
Confidence            9887 4468999999999999999999998876544   7899999999999999999999998865778      7888


Q ss_pred             EEecCCCC-----ccchhhhHHHhHHHHHHhhcC--CCEEEEeCCCCccHHHHHHHHHHH
Q 019521          257 AFSRKQPQ-----KVYVQHKMLEQSQRIWNLLLS--KASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       257 a~Sr~~~~-----~~yVqd~l~~~~~~l~~~l~~--~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +.++++..     .+++...+      +.+.+.+  +..+|+|||+ .|++++.+.|.+.
T Consensus       167 ~~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~~v~icGp~-~m~~~~~~~l~~~  219 (231)
T cd06215         167 ILEQPAPGAWGGYRGRLNAEL------LALLVPDLKERTVFVCGPA-GFMKAVKSLLAEL  219 (231)
T ss_pred             EEccCCCCcccccCCcCCHHH------HHHhcCCccCCeEEEECCH-HHHHHHHHHHHHc
Confidence            88875441     23443321      1112222  4789999998 9999888777653

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.94  E-value=1.1e-26  Score=212.43  Aligned_cols=180  Identities=19%  Similarity=0.338  Sum_probs=143.5

Q ss_pred             CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g~  177 (340)
                      ..||||+...+|  + ..+|+|||+|.|....+.++|+|+.         ..+|.+|.||.+ +++  |++|.+.+|.|.
T Consensus        46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~---------~~~G~~s~~l~~~~~~--Gd~v~i~gP~G~  114 (243)
T cd06216          46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKA---------QPDGLVSNWLVNHLAP--GDVVELSQPQGD  114 (243)
T ss_pred             cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEE---------cCCCcchhHHHhcCCC--CCEEEEECCcee
Confidence            368999888774  2 3579999999984135889999864         356999999984 899  999999999999


Q ss_pred             CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      |.++ +..++++|||+||||||+++++++.......   .+++|+||+|+.+|.+|.+||+++.+.++++      +++.
T Consensus       115 f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~  185 (243)
T cd06216         115 FVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGPT---ADVVLLYYARTREDVIFADELRALAAQHPNL------RLHL  185 (243)
T ss_pred             eecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCCC---CCEEEEEEcCChhhhHHHHHHHHHHHhCCCe------EEEE
Confidence            9988 4468999999999999999999999876533   7899999999999999999999998654778      8888


Q ss_pred             EEecCCCCccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          257 AFSRKQPQKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       257 a~Sr~~~~~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      .+|++ ...+++.....+      +...  ++..+|+|||+ .|.+++.+.|.+.
T Consensus       186 ~~s~~-~~~g~~~~~~l~------~~~~~~~~~~vyvcGp~-~m~~~~~~~l~~~  232 (243)
T cd06216         186 LYTRE-ELDGRLSAAHLD------AVVPDLADRQVYACGPP-GFLDAAEELLEAA  232 (243)
T ss_pred             EEcCC-ccCCCCCHHHHH------HhccCcccCeEEEECCH-HHHHHHHHHHHHC
Confidence            88876 334555432211      1222  25799999998 9999998888664

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=99.94  E-value=1.3e-26  Score=208.33  Aligned_cols=176  Identities=15%  Similarity=0.218  Sum_probs=136.6

Q ss_pred             CCCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~  177 (340)
                      ..||||+...++.    ...|+|||+|.|..  +.++|+|+++        ...|..|.||.++++  |+.|.+.+|.|.
T Consensus        28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~--~~l~~~vk~~--------~~~g~~s~~l~~l~~--G~~v~i~gP~G~   95 (218)
T cd06196          28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPED--DVLEFVIKSY--------PDHDGVTEQLGRLQP--GDTLLIEDPWGA   95 (218)
T ss_pred             CCCCCEEEEEeeCCCCCccccccccccCCCC--CeEEEEEEEc--------CCCCcHhHHHHhCCC--CCEEEEECCccc
Confidence            4799998877753    35899999999853  7899998643        123678999999999  999999999999


Q ss_pred             CCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       178 F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      |.+.   +|+||||+|||||||+++++++......   .+++|+||+|+.+|++|.+||++|..    +      ++..+
T Consensus        96 ~~~~---~~~vlia~GtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~----~------~~~~~  159 (218)
T cd06196          96 IEYK---GPGVFIAGGAGITPFIAILRDLAAKGKL---EGNTLIFANKTEKDIILKDELEKMLG----L------KFINV  159 (218)
T ss_pred             eEec---CceEEEecCCCcChHHHHHHHHHhCCCC---ceEEEEEecCCHHHHhhHHHHHHhhc----c------eEEEE
Confidence            8653   5899999999999999999999875433   67999999999999999999999853    4      66777


Q ss_pred             EecCCCCccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHH
Q 019521          258 FSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +|++... .|.+..+.+  +.+.+.+.. ++.+|+|||+ .|++++.+.|.+.
T Consensus       160 ~s~~~~~-~~~~g~~~~--~~l~~~~~~~~~~vyiCGp~-~m~~~~~~~l~~~  208 (218)
T cd06196         160 VTDEKDP-GYAHGRIDK--AFLKQHVTDFNQHFYVCGPP-PMEEAINGALKEL  208 (218)
T ss_pred             EcCCCCC-CeeeeEECH--HHHHHhcCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence            8886542 333333321  122223333 5789999999 9999998888664

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=99.94  E-value=3.5e-26  Score=210.51  Aligned_cols=180  Identities=20%  Similarity=0.263  Sum_probs=146.1

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l  180 (340)
                      ..||||+...+|....|+|||+|+|.. .+.++|+|+.           .|.+|+||.++++  |+.+.+.+|.|. |.+
T Consensus        28 ~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~--G~~v~i~gP~G~~f~~   93 (253)
T cd06221          28 FKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKP--GDTVGLRGPFGNGFPV   93 (253)
T ss_pred             cCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCC--CCEEEEECCcCCCccc
Confidence            469999988888766799999999853 4789999852           3889999999999  999999999997 555


Q ss_pred             CC-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 PP-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      +. ..+|+||||+||||||+++|++++......  ..+++|+|++|+.+|++|+++|+++.+. .++      ++.+++|
T Consensus        94 ~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~--~~~i~Li~~~r~~~~~~~~~~L~~l~~~-~~~------~~~~~~s  164 (253)
T cd06221          94 EEMKGKDLLLVAGGLGLAPLRSLINYILDNRED--YGKVTLLYGARTPEDLLFKEELKEWAKR-SDV------EVILTVD  164 (253)
T ss_pred             ccccCCeEEEEccccchhHHHHHHHHHHhcccc--CCcEEEEEecCChHHcchHHHHHHHHhc-CCe------EEEEEeC
Confidence            53 678999999999999999999999875321  2789999999999999999999999987 778      8888888


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV  310 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~  310 (340)
                      ++.+    ..+++++.+.+..     ....+..||+|||+ .|++++.+.|.+..
T Consensus       165 ~~~~~~~~~~g~v~~~l~~~~-----~~~~~~~vyicGp~-~mv~~~~~~L~~~G  213 (253)
T cd06221         165 RAEEGWTGNVGLVTDLLPELT-----LDPDNTVAIVCGPP-IMMRFVAKELLKLG  213 (253)
T ss_pred             CCCCCccCCccccchhHHhcC-----CCcCCcEEEEECCH-HHHHHHHHHHHHcC
Confidence            7543    3466766554431     00137899999998 99999988887653

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=99.94  E-value=3.3e-26  Score=207.75  Aligned_cols=182  Identities=18%  Similarity=0.272  Sum_probs=143.5

Q ss_pred             CCCHHHHHHhcC--CC--CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeecC
Q 019521          102 QMPIDWLVQLVP--PL--KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQKG  176 (340)
Q Consensus       102 ~~p~~~l~~~lp--~~--~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~g  176 (340)
                      ..||||+...+|  .-  ..|+|||+|.|.. .+.++|+|+.         ...|.+|.||.+ +++  |+.|.+.+|.|
T Consensus        31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~---------~~~G~~s~~l~~~l~~--Gd~v~i~gP~G   98 (235)
T cd06217          31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKR---------VPGGEVSPYLHDEVKV--GDLLEVRGPIG   98 (235)
T ss_pred             cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEeCCce
Confidence            468999988875  22  3499999999853 4789999854         356899999985 899  99999999999


Q ss_pred             CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEE
Q 019521          177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  255 (340)
Q Consensus       177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~  255 (340)
                      .|.++ ...++++|||+||||||+++++++.......   .+++++||+|+.+|.+|.+||.++.+.++++      +++
T Consensus        99 ~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~~~---~~i~l~~~~r~~~~~~~~~el~~~~~~~~~~------~~~  169 (235)
T cd06217          99 TFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLGWP---VPFRLLYSARTAEDVIFRDELEQLARRHPNL------HVT  169 (235)
T ss_pred             eeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcCCC---ceEEEEEecCCHHHhhHHHHHHHHHHHCCCe------EEE
Confidence            98876 4468999999999999999999998876544   7899999999999999999999998865678      888


Q ss_pred             EEEecCCC-----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          256 VAFSRKQP-----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       256 ~a~Sr~~~-----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      .++||+..     .++++.+.+.+.   +... .++..+|+|||+ +|.+++.+.|.+.
T Consensus       170 ~~~s~~~~~~~~~~~g~~~~~~l~~---~~~~-~~~~~v~icGp~-~m~~~v~~~l~~~  223 (235)
T cd06217         170 EALTRAAPADWLGPAGRITADLIAE---LVPP-LAGRRVYVCGPP-AFVEAATRLLLEL  223 (235)
T ss_pred             EEeCCCCCCCcCCcCcEeCHHHHHh---hCCC-ccCCEEEEECCH-HHHHHHHHHHHHc
Confidence            88888622     234444433221   1000 236899999998 9999998888764

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.93  E-value=4.4e-26  Score=219.46  Aligned_cols=185  Identities=17%  Similarity=0.290  Sum_probs=141.5

Q ss_pred             CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~  177 (340)
                      ..||||+...++  . ...|+|||+|.|.  .+.++|+|+.+         ..|.+|+||. ++++  |+.|.+.+|.|.
T Consensus        33 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~---------~~G~~S~~l~~~l~~--Gd~v~v~gP~G~   99 (352)
T TIGR02160        33 FAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKI---------PGGLFSTWANDEIRP--GDTLEVMAPQGL   99 (352)
T ss_pred             CCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEe---------CCCcchHHHHhcCCC--CCEEEEeCCcee
Confidence            368999988774  2 3479999999984  47899998643         5699999996 7999  999999999999


Q ss_pred             CCCC-C--CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCCCc
Q 019521          178 LPRP-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGG  253 (340)
Q Consensus       178 F~l~-~--~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~~~  253 (340)
                      |.++ .  ..+++||||+|||||||++|+++.......   .+++|+||+|+++|++|.+||+++.+.++ ++      +
T Consensus       100 f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~------~  170 (352)
T TIGR02160       100 FTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEPR---STFTLVYGNRRTASVMFAEELADLKDKHPQRF------H  170 (352)
T ss_pred             eecCCCccccccEEEEeccccHhHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcE------E
Confidence            9876 3  247999999999999999999998776444   78999999999999999999999987644 47      7


Q ss_pred             EEEEEecCCCCccchhhhHH-HhHHHHH-Hhh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          254 FYVAFSRKQPQKVYVQHKML-EQSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       254 ~~~a~Sr~~~~~~yVqd~l~-~~~~~l~-~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++.++|++.....+....+. .....+. ++.  .....+|+|||+ .|++++++.|.+.
T Consensus       171 ~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~  229 (352)
T TIGR02160       171 LAHVLSREPREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQ-AMVDDAEQALTGL  229 (352)
T ss_pred             EEEEecCCCcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCH-HHHHHHHHHHHHc
Confidence            88889986542221122211 1111111 111  125689999998 9999999988765

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=99.93  E-value=8.2e-26  Score=209.18  Aligned_cols=174  Identities=18%  Similarity=0.222  Sum_probs=137.9

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l  180 (340)
                      ..||||+...+|...+|+|||++.+   .+.++|+|+.           .|.+|+||.++++  |+.|.+.+|.|. |.+
T Consensus        33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~--Gd~v~v~gP~G~~f~~   96 (263)
T PRK08221         33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKE--GDKLFLRGPYGNGFPV   96 (263)
T ss_pred             CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCC--CCEEEEECCCCCCccc
Confidence            4699999888887777999999975   3789999852           3899999999999  999999999997 777


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      + ...+|+||||+|||||||+|++++.......  ..+++|+||+|+.+|++|++||++|.+.   +      .+.++++
T Consensus        97 ~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~--~~~v~L~~g~r~~~~l~~~~el~~~~~~---~------~~~~~~~  165 (263)
T PRK08221         97 DTYKGKELIVVAGGTGVAPVKGLMRYFYENPQE--IKSLDLILGFKNPDDILFKEDLKRWREK---I------NLILTLD  165 (263)
T ss_pred             CccCCccEEEEcccccHHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHhhc---C------cEEEEec
Confidence            6 5568999999999999999999998764321  2589999999999999999999999875   3      3445555


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++..    ..+++++.+.+.      .+.  .+..+|+|||+ .|++++.+.|.+.
T Consensus       166 ~~~~~~~~~~G~v~~~l~~~------~~~~~~~~~vylCGp~-~mv~~~~~~L~~~  214 (263)
T PRK08221        166 EGEEGYRGNVGLVTKYIPEL------TLKDIDNMQVIVVGPP-IMMKFTVLEFLKR  214 (263)
T ss_pred             CCCCCCccCccccChhhHhc------cCCCcCCeEEEEECCH-HHHHHHHHHHHHc
Confidence            5432    245666544331      111  36789999999 9999998888654

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=99.93  E-value=7.2e-26  Score=203.26  Aligned_cols=175  Identities=18%  Similarity=0.282  Sum_probs=139.1

Q ss_pred             CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~  177 (340)
                      ..||||+...+|.   ...|+|||+|.|.. .+.++|+|+.           .|.+|.+|. ++++  |+.|.+.+|.|.
T Consensus        23 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~--G~~v~i~gP~G~   88 (216)
T cd06198          23 HRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKP--GTRVTVEGPYGR   88 (216)
T ss_pred             cCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCC--CCEEEEECCCCC
Confidence            3699998887774   57899999998853 4789999853           378999998 8999  999999999999


Q ss_pred             CCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       178 F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      |.++...++++|||+||||||+++++++.......   .+++|+||+|+.+|.+|.++|+++.+. .++      ++++.
T Consensus        89 ~~~~~~~~~~vlia~GtGiap~~~~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~-~~~------~~~~~  158 (216)
T cd06198          89 FTFDDRRARQIWIAGGIGITPFLALLEALAARGDA---RPVTLFYCVRDPEDAVFLDELRALAAA-AGV------VLHVI  158 (216)
T ss_pred             CcccccCceEEEEccccCHHHHHHHHHHHHhcCCC---ceEEEEEEECCHHHhhhHHHHHHHHHh-cCe------EEEEE
Confidence            98873378999999999999999999998876543   789999999999999999999999887 466      67766


Q ss_pred             EecCCCCccchhhhHHHhHHHHHHhh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          258 FSRKQPQKVYVQHKMLEQSQRIWNLL--LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      .+++.. .......+       .+..  ..+..+|+|||+ .|++++++.|.+.
T Consensus       159 ~~~~~~-~~~~~~~~-------~~~~~~~~~~~vyicGp~-~m~~~v~~~l~~~  203 (216)
T cd06198         159 DSPSDG-RLTLEQLV-------RALVPDLADADVWFCGPP-GMADALEKGLRAL  203 (216)
T ss_pred             eCCCCc-ccchhhhh-------hhcCCCcCCCeEEEECcH-HHHHHHHHHHHHc
Confidence            655332 11222211       0111  236899999998 9999998888763

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=99.93  E-value=6.5e-26  Score=215.17  Aligned_cols=181  Identities=17%  Similarity=0.178  Sum_probs=136.5

Q ss_pred             CCHHHHHHhcC-C-----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC
Q 019521          103 MPIDWLVQLVP-P-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       103 ~p~~~l~~~lp-~-----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g  176 (340)
                      .|||++....+ .     ...|+|||+|.|.. .+.++|+|+.         ...|.+|+||.++++  ||+|.+.+|.+
T Consensus        83 ~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~---------~~~G~~S~~L~~lk~--Gd~v~v~GP~f  150 (325)
T PTZ00274         83 KPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKR---------KKDGLMTNHLFGMHV--GDKLLFRSVTF  150 (325)
T ss_pred             CCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEE---------cCCCcccHHHhcCCC--CCEEEEeCCee
Confidence            58888764333 1     24799999999853 5789999854         468999999999999  99999999877


Q ss_pred             CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCC--C-CCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCC
Q 019521          177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS--G-PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKG  251 (340)
Q Consensus       177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~--~-~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~  251 (340)
                      .|.++ +..++++|||||||||||++|+++...+...  . ...+++|+||+|+.+|++|++||+++++.++ ++     
T Consensus       151 ~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f-----  225 (325)
T PTZ00274        151 KIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRF-----  225 (325)
T ss_pred             ecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcE-----
Confidence            77665 5557999999999999999999998775321  0 1258999999999999999999999987655 58     


Q ss_pred             CcEEEEEecCCC------CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHH
Q 019521          252 GGFYVAFSRKQP------QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWST  305 (340)
Q Consensus       252 ~~~~~a~Sr~~~------~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~  305 (340)
                       +++.+.|++..      ..++|.+.+...   +..... .+..+|+|||+ +|++.+...
T Consensus       226 -~v~~~ls~~~~~~~w~g~~G~V~~~ll~~---~~~~~~~~~~~vylCGPp-~Mm~av~~~  281 (325)
T PTZ00274        226 -KVYYTIDQAVEPDKWNHFLGYVTKEMVRR---TMPAPEEKKKIIMLCGPD-QLLNHVAGT  281 (325)
T ss_pred             -EEEEEeCCCCcccCCCCCCCccCHHHHHH---hcCCCccCCcEEEEeCCH-HHHHHhcCC
Confidence             88888886421      245665543211   110011 13579999999 999888554

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=99.93  E-value=2e-25  Score=203.55  Aligned_cols=182  Identities=22%  Similarity=0.325  Sum_probs=141.9

Q ss_pred             CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~  177 (340)
                      ..|||++...+|.   ..+|+|||+|.+..  +.++|+|+.+         ..|.+|.||. ++++  |+.+.+.+|.|.
T Consensus        33 ~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~---------~~G~~s~~l~~~~~~--G~~v~i~gP~G~   99 (241)
T cd06214          33 YRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRV---------PGGRFSNWANDELKA--GDTLEVMPPAGR   99 (241)
T ss_pred             cCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEc---------CCCccchhHHhccCC--CCEEEEeCCccc
Confidence            3689998888862   36899999998854  4799998543         5699999997 7999  999999999999


Q ss_pred             CCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCCCcE
Q 019521          178 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGF  254 (340)
Q Consensus       178 F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~~~~  254 (340)
                      |.++ + ..+++||||+||||||++++++++......   .+++|+|++|+.+|++|.+||+++.+.++ ++      ++
T Consensus       100 ~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~------~~  170 (241)
T cd06214         100 FTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPA---SRVTLVYGNRTEASVIFREELADLKARYPDRL------TV  170 (241)
T ss_pred             cccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhCcCce------EE
Confidence            9887 4 478999999999999999999998876544   78999999999999999999999976533 67      67


Q ss_pred             EEEEecCCCC----ccchhhhHHHhHHHHH-Hhh--cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          255 YVAFSRKQPQ----KVYVQHKMLEQSQRIW-NLL--LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       255 ~~a~Sr~~~~----~~yVqd~l~~~~~~l~-~~l--~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ..++|+++..    .+.+.+.+.   .... +.+  .++..||+|||+ .|++.+.+.|.+.
T Consensus       171 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~v~icGp~-~mv~~v~~~l~~~  228 (241)
T cd06214         171 IHVLSREQGDPDLLRGRLDAAKL---NALLKNLLDATEFDEAFLCGPE-PMMDAVEAALLEL  228 (241)
T ss_pred             EEEecCCCCCcccccCccCHHHH---HHhhhhhcccccCcEEEEECCH-HHHHHHHHHHHHc
Confidence            7788876442    223322221   1111 111  236899999999 8999998887653

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=99.93  E-value=1.6e-25  Score=205.21  Aligned_cols=172  Identities=22%  Similarity=0.277  Sum_probs=137.1

Q ss_pred             CCCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~  177 (340)
                      ..||||+...+|.    ...|+|||+|.|.. .+.++|+|+.+           |.+|+||.++++  |++|.+.+|.|.
T Consensus        25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~~-----------G~~s~~l~~l~~--Gd~v~i~gP~G~   90 (246)
T cd06218          25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKVV-----------GKGTRLLSELKA--GDELDVLGPLGN   90 (246)
T ss_pred             CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEEE-----------CcchHHHhcCCC--CCEEEEEecCCC
Confidence            4689988887764    46899999998843 47899998642           788999999999  999999999995


Q ss_pred             -CCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          178 -LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       178 -F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                       |.+++..+++||||+||||||++++++++...  .   .+++|||++|+.+|.+|++||+++..           .+..
T Consensus        91 ~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~--~---~~v~l~~~~r~~~d~~~~~eL~~l~~-----------~~~~  154 (246)
T cd06218          91 GFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAER--G---IKVTVLLGFRSADDLFLVEEFEALGA-----------EVYV  154 (246)
T ss_pred             CcCCCCCCCcEEEEecccCHHHHHHHHHHHHhc--C---CceEEEEEccchhhhhhHHHHHhhCC-----------cEEE
Confidence             76665568999999999999999999998763  2   67999999999999999999998843           2222


Q ss_pred             EEecCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521          257 AFSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV  310 (340)
Q Consensus       257 a~Sr~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~  310 (340)
                       ++++.  ..++|+++.+.+....     ..+..||+|||+ .|++++++.|.+..
T Consensus       155 -~~~~~~~~~~g~v~~~l~~~~~~-----~~~~~vyiCGp~-~mv~~~~~~L~~~G  203 (246)
T cd06218         155 -ATDDGSAGTKGFVTDLLKELLAE-----ARPDVVYACGPE-PMLKAVAELAAERG  203 (246)
T ss_pred             -EcCCCCCCcceehHHHHHHHhhc-----cCCCEEEEECCH-HHHHHHHHHHHhcC
Confidence             23332  2467888877655322     147899999998 99999999987753

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=99.93  E-value=1.3e-25  Score=203.44  Aligned_cols=183  Identities=17%  Similarity=0.196  Sum_probs=143.3

Q ss_pred             CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521          102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F  178 (340)
                      ..|||++...+|.   ...|+|||+|.+.. .+.++|+|+.         ...|.+|.||.++++  |++|.+.+|.|.|
T Consensus        29 ~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~---------~~~G~~s~~l~~~~~--G~~v~i~gP~G~~   96 (234)
T cd06183          29 LPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKI---------YPGGKMSQYLHSLKP--GDTVEIRGPFGKF   96 (234)
T ss_pred             CCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEE---------CCCCcchhHHhcCCC--CCEEEEECCccce
Confidence            4789998888875   46899999998853 4689999854         246999999999999  9999999999999


Q ss_pred             CCC-CCC-CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcC-CCccccCCCcEE
Q 019521          179 PRP-PPS-VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGFY  255 (340)
Q Consensus       179 ~l~-~~~-~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~-g~l~~~~~~~~~  255 (340)
                      .+. ... +++||||+||||||+++++++.......  ..+++|+|++|+.+|.+|.+||+++.+.+ +++      +++
T Consensus        97 ~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~--~~~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~  168 (234)
T cd06183          97 EYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPED--KTKISLLYANRTEEDILLREELDELAKKHPDRF------KVH  168 (234)
T ss_pred             eecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCc--CcEEEEEEecCCHHHhhhHHHHHHHHHhCcccE------EEE
Confidence            886 444 7999999999999999999999875311  27899999999999999999999998752 567      778


Q ss_pred             EEEecCCC----CccchhhhHHHhHHHHHHh-hcCCCEEEEeCCCCccHH-HHHHHHHH
Q 019521          256 VAFSRKQP----QKVYVQHKMLEQSQRIWNL-LLSKASIYVAGSATKMPS-DVWSTFEE  308 (340)
Q Consensus       256 ~a~Sr~~~----~~~yVqd~l~~~~~~l~~~-l~~~~~iyvCG~~~~M~~-~v~~~L~~  308 (340)
                      .++|+++.    ..+++++.+.+..   ... ...+..+|+|||+ .|++ ++++.|.+
T Consensus       169 ~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp~-~~~~~~~~~~l~~  223 (234)
T cd06183         169 YVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGPP-PMIEGAVKGLLKE  223 (234)
T ss_pred             EEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECCH-HHHHHHHHHHHHH
Confidence            88887543    2456665432220   000 1236789999998 9999 88887764

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=99.93  E-value=2.3e-25  Score=205.94  Aligned_cols=174  Identities=18%  Similarity=0.180  Sum_probs=136.4

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l  180 (340)
                      ..||||+...+|...+|+|||+|.+   .+.++|+|+.           .|.+|++|.++++  ||.|.+.+|.|. |.+
T Consensus        31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~--Gd~v~i~gP~G~~f~~   94 (261)
T TIGR02911        31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKE--GDNLFLRGPYGNGFDV   94 (261)
T ss_pred             CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCC--CCEEEEecCCCCCccc
Confidence            4799999988887778999999853   4789999852           3899999999999  999999999997 777


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      + ...+|++|||+||||||++++++++......  ..+++|+||+|+.+|++|.+||++|.+. .++        ...++
T Consensus        95 ~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~--~~~v~L~~~~r~~~~~~~~~eL~~l~~~-~~~--------~~~~~  163 (261)
T TIGR02911        95 DNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE--IKSLNLILGFKTPDDILFKEDIAEWKGN-INL--------TLTLD  163 (261)
T ss_pred             CccCCceEEEEecccCcHHHHHHHHHHHhCccc--CceEEEEEecCCHHHhhHHHHHHHHHhc-CcE--------EEEEc
Confidence            6 5568999999999999999999988764321  2679999999999999999999999875 333        33444


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhc--CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLL--SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~--~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++..    ..+++++.+.+.      .+.  .+..+|+|||+ .|.+++++.|.+.
T Consensus       164 ~~~~~~~~~~g~v~~~l~~~------~~~~~~~~~v~lCGp~-~mv~~~~~~L~~~  212 (261)
T TIGR02911       164 EAEEDYKGNIGLVTKYIPEL------TLKDIEEVQAIVVGPP-IMMKFTVQELLKK  212 (261)
T ss_pred             CCCCCCcCCeeccCHhHHhc------cCCCccceEEEEECCH-HHHHHHHHHHHHc
Confidence            4322    245666544331      111  26789999999 9999988887664

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=99.93  E-value=2.8e-25  Score=198.49  Aligned_cols=171  Identities=15%  Similarity=0.184  Sum_probs=134.2

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccC-CCCccccc-cCCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA-GLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~-G~~S~~L~-~l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|....|+|||+|.|.+ .+.++|+|+.+         .. +.+|.||. .+++  |+.|.+.+|.|.|.
T Consensus        26 ~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~---------~~g~~~s~~l~~~~~~--Gd~v~i~gP~g~f~   93 (211)
T cd06185          26 FEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLRE---------PASRGGSRYMHELLRV--GDELEVSAPRNLFP   93 (211)
T ss_pred             CCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEec---------cCCCchHHHHHhcCCC--CCEEEEcCCccCCc
Confidence            478999998888778899999999853 58899998643         33 34799997 5899  99999999999998


Q ss_pred             CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      ++...+|+||||+||||||+++++++.....     .++.++||+|+.+|.+|.++|+++. . .++        .+.++
T Consensus        94 ~~~~~~~~v~ia~GtGiap~~~il~~~~~~~-----~~v~l~~~~r~~~~~~~~~~l~~~~-~-~~~--------~~~~~  158 (211)
T cd06185          94 LDEAARRHLLIAGGIGITPILSMARALAARG-----ADFELHYAGRSREDAAFLDELAALP-G-DRV--------HLHFD  158 (211)
T ss_pred             CCCCCCcEEEEeccchHhHHHHHHHHHHhCC-----CCEEEEEEeCCCcchhHHHHHhhhc-C-CcE--------EEEEC
Confidence            8744679999999999999999999987632     6799999999999999999999987 3 344        34455


Q ss_pred             cCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +.. ...++.+.+..        ..++..+|+|||+ .|++++++.|.+.
T Consensus       159 ~~~-~~~~~~~~~~~--------~~~~~~vyicGp~-~m~~~~~~~l~~~  198 (211)
T cd06185         159 DEG-GRLDLAALLAA--------PPAGTHVYVCGPE-GMMDAVRAAAAAL  198 (211)
T ss_pred             CCC-CccCHHHHhcc--------CCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence            433 23344433322        2346899999998 9999998888664

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=99.93  E-value=2.6e-25  Score=209.50  Aligned_cols=192  Identities=17%  Similarity=0.148  Sum_probs=140.9

Q ss_pred             CCCHHHHHHhcCC-------CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEee
Q 019521          102 QMPIDWLVQLVPP-------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQ  174 (340)
Q Consensus       102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~  174 (340)
                      ..||||+...++.       ...|+||++|+|. ..+.++|+|+.+.-.........|.+|+||.++++  ||.|.+.+|
T Consensus        64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~-~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~i~gP  140 (300)
T PTZ00319         64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD-EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL--GDKIEMRGP  140 (300)
T ss_pred             CccceEEEEEEEeCCCCccceEEeeeccCCCcc-cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC--CCEEEEEcc
Confidence            3589998877652       3469999999984 46889999976521111111246999999999999  999999999


Q ss_pred             cCCCCCC-C---------------CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHH
Q 019521          175 KGSLPRP-P---------------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS  238 (340)
Q Consensus       175 ~g~F~l~-~---------------~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~  238 (340)
                      .|.|.+. +               ..+|++|||+|||||||++++++.......  ..++.|+||+|+.+|.+|.+||++
T Consensus       141 ~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~--~~~i~liyg~r~~~dl~~~~eL~~  218 (300)
T PTZ00319        141 VGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKED--RTKVFLVYANQTEDDILLRKELDE  218 (300)
T ss_pred             ceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHhCCCC--CceEEEEEecCCHHHhhHHHHHHH
Confidence            9998653 1               124899999999999999999998865322  157999999999999999999999


Q ss_pred             hHhcCCCccccCCCcEEEEEecCCC-----CccchhhhHHHhHHHHHHhhc------CCCEEEEeCCCCccHH-HHHHHH
Q 019521          239 HSLNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQSQRIWNLLL------SKASIYVAGSATKMPS-DVWSTF  306 (340)
Q Consensus       239 ~~~~~g~l~~~~~~~~~~a~Sr~~~-----~~~yVqd~l~~~~~~l~~~l~------~~~~iyvCG~~~~M~~-~v~~~L  306 (340)
                      +.+. +++      +++.+.++++.     ..++|++.+.+..   .....      ++..+|+|||+ +|++ .+.+.|
T Consensus       219 ~~~~-~~~------~~~~~~~~~~~~~~~~~~G~v~~~~l~~~---~~~~~~~~~~~~~~~vyiCGp~-~mv~~~~~~~L  287 (300)
T PTZ00319        219 AAKD-PRF------HVWYTLDREATPEWKYGTGYVDEEMLRAH---LPVPDPQNSGIKKVMALMCGPP-PMLQMAVKPNL  287 (300)
T ss_pred             HhhC-CCE------EEEEEECCCCCCCcccccceeCHHHHHhh---cCCccccccccCCeEEEEECCH-HHHHHHHHHHH
Confidence            7655 788      88888887432     3467766443321   01011      24689999999 8887 456666


Q ss_pred             HHH
Q 019521          307 EEI  309 (340)
Q Consensus       307 ~~i  309 (340)
                      .+.
T Consensus       288 ~~~  290 (300)
T PTZ00319        288 EKI  290 (300)
T ss_pred             HHc
Confidence            543

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=99.92  E-value=1.2e-24  Score=200.71  Aligned_cols=179  Identities=20%  Similarity=0.260  Sum_probs=138.1

Q ss_pred             CCCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCC
Q 019521          102 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~  177 (340)
                      ..||||+...++.-   ..|.|||+|+|.. ++.+.|+|++         ...|..|+||+ ++++  ||+|.+..|.|.
T Consensus        35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~---------~~~G~~S~~Lh~~lk~--Gd~l~v~~P~G~  102 (266)
T COG1018          35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKR---------EDGGGGSNWLHDHLKV--GDTLEVSAPAGD  102 (266)
T ss_pred             cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEE---------eCCCcccHHHHhcCCC--CCEEEEecCCCC
Confidence            46899998888754   7899999999964 4688999854         35599999999 9999  999999999999


Q ss_pred             CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      |.++ .+..|++|||+|||||||+||++......   + .++.++|++|+++|..|++| +.+...+++..     .+..
T Consensus       103 F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~---~-~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~-----~~~~  172 (266)
T COG1018         103 FVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRG---P-ADVVLVHAARTPADLAFRDE-LELAAELPNAL-----LLGL  172 (266)
T ss_pred             ccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhC---C-CCEEEEEecCChhhcchhhH-HHHHhhCCCCe-----eEEE
Confidence            9998 56669999999999999999999988764   2 57999999999999999999 88776655541     3443


Q ss_pred             EEecCCCCccch-hhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHH
Q 019521          257 AFSRKQPQKVYV-QHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVS  311 (340)
Q Consensus       257 a~Sr~~~~~~yV-qd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~  311 (340)
                      ..++... .++. ...+..       .... +..+|+|||. +|.++|+..|.+...
T Consensus       173 ~~~~~~~-~g~~~~~~l~~-------~~~~~~r~~y~CGp~-~fm~av~~~l~~~g~  220 (266)
T COG1018         173 YTERGKL-QGRIDVSRLLS-------AAPDGGREVYLCGPG-PFMQAVRLALEALGV  220 (266)
T ss_pred             EEecCCc-cccccHHHHhc-------cCCCCCCEEEEECCH-HHHHHHHHHHHHcCC
Confidence            3332211 2222 122111       2222 3899999998 999999998877643

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.92  E-value=1.4e-24  Score=195.15  Aligned_cols=185  Identities=19%  Similarity=0.329  Sum_probs=155.1

Q ss_pred             CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcc
Q 019521          116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTG  195 (340)
Q Consensus       116 ~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtG  195 (340)
                      ..|.||+||.|.+ -+.|.|-|++...+......+.|.||+|+.+|++  ||.|.|++|.|.|...+.++++|||+||.|
T Consensus       210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKp--GDKvtisGPfGEfFaKdtdaemvFigGGAG  286 (410)
T COG2871         210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKP--GDKVTISGPFGEFFAKDTDAEMVFIGGGAG  286 (410)
T ss_pred             HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecC--CCeEEEeccchhhhhccCCCceEEEecCcC
Confidence            4699999999965 6889999988877666667889999999999999  999999999999988877899999999999


Q ss_pred             hhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCCC------ccchh
Q 019521          196 CAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ------KVYVQ  269 (340)
Q Consensus       196 IAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~~------~~yVq  269 (340)
                      .||+||-+-..+.+...  .+++.+.||+|+..+.+|++|++++++.+++|      +.++++|.+..+      .+++.
T Consensus       287 mapmRSHIfDqL~rlhS--kRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF------~wH~aLSdplpEDnW~g~TgFih  358 (410)
T COG2871         287 MAPMRSHIFDQLKRLHS--KRKISFWYGARSLREMFYQEDFDQLQAENPNF------HWHLALSDPLPEDNWDGYTGFIH  358 (410)
T ss_pred             cCchHHHHHHHHHhhcc--cceeeeeeccchHHHhHHHHHHHHHHhhCCCc------EEEEEecCCCCcCCcccchhHHH
Confidence            99999998877765443  38899999999999999999999999888999      999999987653      35555


Q ss_pred             hhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhC
Q 019521          270 HKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEG  314 (340)
Q Consensus       270 d~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~  314 (340)
                      ..+.++  .+.++-. +++.+|+|||+ .|..+|.+.|.+...+..
T Consensus       359 nv~~en--~Lk~h~aPEDceyYmCGPp-~mNasvikmL~dlGVE~e  401 (410)
T COG2871         359 NVLYEN--YLKDHEAPEDCEYYMCGPP-LMNASVIKMLKDLGVERE  401 (410)
T ss_pred             HHHHhh--hhhcCCCchheeEEeeCcc-hhhHHHHHHHHhcCcccc
Confidence            555543  2222222 28999999999 999999999998876543

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=99.91  E-value=2.7e-24  Score=200.91  Aligned_cols=172  Identities=16%  Similarity=0.156  Sum_probs=132.3

Q ss_pred             CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEE-EEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~  179 (340)
                      ..||||+...++.. .+|+|||+|++.. .+.++|+|+.           .|..|.+|.++++  |+.| .+.+|.|.|.
T Consensus        28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~--Gd~v~~i~GP~G~~~   93 (281)
T PRK06222         28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKE--GDSILDVVGPLGKPS   93 (281)
T ss_pred             CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCC--CCEEeeEEcCCCCCc
Confidence            36999998887643 4689999998743 5789999864           3899999999999  9999 7999999866


Q ss_pred             CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      ..+..++++|||+|+||||+++++++.....     .+++++||+|+.+|.+|.+||+++...   +        ++ .+
T Consensus        94 ~~~~~~~~llIaGGiGiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~d~~~~~el~~~~~~---~--------~v-~~  156 (281)
T PRK06222         94 EIEKFGTVVCVGGGVGIAPVYPIAKALKEAG-----NKVITIIGARNKDLLILEDEMKAVSDE---L--------YV-TT  156 (281)
T ss_pred             ccCCCCeEEEEeCcCcHHHHHHHHHHHHHCC-----CeEEEEEecCCHHHhhcHHHHHhhCCe---E--------EE-Ec
Confidence            5533579999999999999999999876542     579999999999999999999987643   1        11 22


Q ss_pred             cCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      .+.  ..+++|++.+.+....    ..+...||+|||+ +|++.+.+.+.+.
T Consensus       157 ~d~~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~  203 (281)
T PRK06222        157 DDGSYGRKGFVTDVLKELLES----GKKVDRVVAIGPV-IMMKFVAELTKPY  203 (281)
T ss_pred             CCCCcCcccchHHHHHHHhhc----CCCCcEEEEECCH-HHHHHHHHHHHhc
Confidence            222  2456787765443111    1114689999999 9999999888664

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=99.91  E-value=4.2e-24  Score=196.32  Aligned_cols=166  Identities=21%  Similarity=0.285  Sum_probs=133.3

Q ss_pred             CCCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-
Q 019521          102 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-  177 (340)
                      ..||||+...+|..   .+|+|||+|+|   .+.++|+|+.           .|.+|+||.++++  |++|.+.+|.|. 
T Consensus        32 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~--G~~v~i~gP~G~~   95 (250)
T PRK00054         32 MKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKE--GDELDIRGPLGNG   95 (250)
T ss_pred             CCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCC--CCEEEEEcccCCC
Confidence            47899988877754   68999999998   3789999853           3889999999999  999999999996 


Q ss_pred             CCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       178 F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      |.++...+|+||||+||||||+++++++.....     .++.|+|++|+.+|++|.+||+++.+    +        ++.
T Consensus        96 f~l~~~~~~~vlIagG~GiaP~~s~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~~----~--------~~~  158 (250)
T PRK00054         96 FDLEEIGGKVLLVGGGIGVAPLYELAKELKKKG-----VEVTTVLGARTKDEVIFEEEFAKVGD----V--------YVT  158 (250)
T ss_pred             CCCCCCCCeEEEEeccccHHHHHHHHHHHHHcC-----CcEEEEEEcCCHHHhhhHHHHHhcCC----E--------EEE
Confidence            877655579999999999999999999987643     56999999999999999999998431    2        222


Q ss_pred             EecCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          258 FSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       258 ~Sr~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                       +++.  ..++|+++.+.+..       .+...||+|||+ .|++++.+.|.+.
T Consensus       159 -~~~~~~~~~g~v~~~l~~~~-------~~~~~vyvCGp~-~m~~~v~~~l~~~  203 (250)
T PRK00054        159 -TDDGSYGFKGFVTDVLDELD-------SEYDAIYSCGPE-IMMKKVVEILKEK  203 (250)
T ss_pred             -ecCCCCCcccchhHhHhhhc-------cCCCEEEEeCCH-HHHHHHHHHHHHc
Confidence             2222  24578888765431       235689999998 9999999988774

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.91  E-value=9.7e-24  Score=194.02  Aligned_cols=177  Identities=21%  Similarity=0.290  Sum_probs=145.2

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP  181 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~  181 (340)
                      ..||||+...+|....|||||+|.+.. .+.++|.|++.         ..|.+|.++..+++  ||.|.+.||.|++...
T Consensus        36 ~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~---------~~G~~T~~i~~~k~--gd~i~v~GP~G~~~~~  103 (252)
T COG0543          36 FKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVY---------EVGKVTKYIFGLKE--GDKIRVRGPLGNGFLR  103 (252)
T ss_pred             cCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEE---------eCChHHHHHhhccC--CCEEEEEcCCCCCccc
Confidence            479999999999999999999999953 57778887553         57999999999999  9999999999987665


Q ss_pred             -CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe-
Q 019521          182 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS-  259 (340)
Q Consensus       182 -~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S-  259 (340)
                       +..+|+++||+|||+||+++++++....+..   .+++++||+|+++|+++.+||+++.+.          .++.+.+ 
T Consensus       104 ~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~---~~V~~~~G~~~~~dl~~~~el~~~~~~----------~~~~~~~~  170 (252)
T COG0543         104 EKIGKPVLLIAGGTGIAPLYAIAKELKEKGDA---NKVTLLYGARTAKDLLLLDELEELAEK----------EVHPVTDD  170 (252)
T ss_pred             cccCCcEEEEecccCHhHHHHHHHHHHhcCCC---ceEEEEEeccChhhcccHHHHHHhhcC----------cEEEEECC
Confidence             6777899999999999999999999986532   789999999999999999999999864          2333443 


Q ss_pred             cCCCCccch-hhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521          260 RKQPQKVYV-QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV  310 (340)
Q Consensus       260 r~~~~~~yV-qd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~  310 (340)
                      .....+++| ++.+.+...      .+...+|+|||+ .|.+.+.+.+.+..
T Consensus       171 ~~~G~~G~v~~~~~~~~~~------~~~~~v~~cGp~-~M~~~v~~~~~~~g  215 (252)
T COG0543         171 GWKGRKGFVTTDVLKELLD------LEVDDVYICGPP-AMVKAVREKLKEYG  215 (252)
T ss_pred             CCCccCcceeHHHHhhhcc------ccCCEEEEECCH-HHHHHHHHHHHhcC
Confidence            122257888 676655421      146899999999 99999988887754

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.91  E-value=7.7e-24  Score=192.55  Aligned_cols=165  Identities=21%  Similarity=0.253  Sum_probs=130.4

Q ss_pred             CCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-CC
Q 019521          101 VQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LP  179 (340)
Q Consensus       101 ~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~  179 (340)
                      -..||||+...+|....|+|||+|+|    +.++|+|+.           .|.+|+||.++++  ||.+.+.+|.|. |.
T Consensus        23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~--Gd~v~i~gP~G~~f~   85 (233)
T cd06220          23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKE--GDKLGIRGPYGNGFE   85 (233)
T ss_pred             CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCC--CCEEEEECcCCCCcc
Confidence            34799999888877677999999987    689999852           3899999999999  999999999997 76


Q ss_pred             CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      ++  .+|+||||+||||||+++++++....      .++.|+||+|+.+|++|++||++.    ..+      .+  ..+
T Consensus        86 ~~--~~~~vliAgGtGitP~~sil~~~~~~------~~i~l~~~~r~~~d~~~~~eL~~~----~~~------~~--~~~  145 (233)
T cd06220          86 LV--GGKVLLIGGGIGIAPLAPLAERLKKA------ADVTVLLGARTKEELLFLDRLRKS----DEL------IV--TTD  145 (233)
T ss_pred             CC--CCeEEEEecCcChHHHHHHHHHHHhc------CCEEEEEecCChHHChhHHHHhhC----CcE------EE--EEe
Confidence            65  57999999999999999999988764      579999999999999999999972    222      22  222


Q ss_pred             c-CCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 R-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r-~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      . .....+++++.+.+..      ......+|+|||+ .|.+++.+.|.+.
T Consensus       146 ~~~~~~~g~~~~~l~~~~------~~~~~~vyicGp~-~m~~~~~~~L~~~  189 (233)
T cd06220         146 DGSYGFKGFVTDLLKELD------LEEYDAIYVCGPE-IMMYKVLEILDER  189 (233)
T ss_pred             CCCCcccceehHHHhhhc------ccCCCEEEEECCH-HHHHHHHHHHHhc
Confidence            1 1123567777554331      1235689999998 9999998888764

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.90  E-value=8.3e-24  Score=194.14  Aligned_cols=171  Identities=16%  Similarity=0.152  Sum_probs=131.4

Q ss_pred             CCCHHHHHHhcC-CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEE-EEEeecCCCC
Q 019521          102 QMPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp-~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~  179 (340)
                      ..||||+...++ ....|+|||+|.|.. .+.++|+|+.           .|..|.+|.++++  |+.+ .+.+|.|.|.
T Consensus        27 ~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~--G~~v~~i~gP~G~~~   92 (248)
T cd06219          27 AKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEE--GDKIHDVVGPLGKPS   92 (248)
T ss_pred             CCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCC--CCEeeeeecCCCCCe
Confidence            368999887765 345799999998743 4789999853           3889999999999  9999 6999999876


Q ss_pred             CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      +.+..+++||||+||||||+++++++.....     .+++|+||+|+.+|++|.+||+++.+.          . +.+ +
T Consensus        93 ~~~~~~~~lliagG~GiaP~~~~l~~~~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~----------~-~~~-~  155 (248)
T cd06219          93 EIENYGTVVFVGGGVGIAPIYPIAKALKEAG-----NRVITIIGARTKDLVILEDEFRAVSDE----------L-IIT-T  155 (248)
T ss_pred             ecCCCCeEEEEeCcccHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHHhhcCe----------E-EEE-e
Confidence            5534579999999999999999999977642     579999999999999999999999643          2 222 3


Q ss_pred             cCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          260 RKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       260 r~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                      ++.  ...+++++.+.+..+   + ......+|+|||+ .|++.+.+.|.+
T Consensus       156 ~~~~~~~~g~v~~~l~~~~~---~-~~~~~~vyiCGP~-~m~~~~~~~l~~  201 (248)
T cd06219         156 DDGSYGEKGFVTDPLKELIE---S-GEKVDLVIAIGPP-IMMKAVSELTRP  201 (248)
T ss_pred             CCCCCCccccchHHHHHHHh---c-cCCccEEEEECCH-HHHHHHHHHHHH
Confidence            332  235677765543321   1 1224689999999 999999888865

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=99.90  E-value=1.3e-23  Score=192.14  Aligned_cols=171  Identities=17%  Similarity=0.153  Sum_probs=131.2

Q ss_pred             CCCHHHHHHhcC---CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521          102 QMPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp---~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F  178 (340)
                      ..||||+...+|   ....|+|||+|.|.. .+.++|+|+.           .|..|+||.++++  |+.+.+.+|.|.|
T Consensus        25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~--G~~l~i~gP~G~~   90 (243)
T cd06192          25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKP--GEKLDVMGPLGNG   90 (243)
T ss_pred             CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCC--CCEEEEEccCCCC
Confidence            368999888774   557899999999843 5889999853           3889999999999  9999999999987


Q ss_pred             CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      ... +..++++|||+||||||+++++++.....     .+++|+||+|+.+|.+|.+||+++. .          .+ ..
T Consensus        91 ~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~-----~~v~l~~~~r~~~d~~~~~el~~~~-~----------~~-~~  153 (243)
T cd06192          91 FEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG-----NKVTVLAGAKKAKEEFLDEYFELPA-D----------VE-IW  153 (243)
T ss_pred             CccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC-----CeEEEEEecCcHHHHHHHHHHHhhc-C----------eE-EE
Confidence            655 44689999999999999999999987642     6799999999999999999998872 1          12 22


Q ss_pred             EecCCC--CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521          258 FSRKQP--QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV  310 (340)
Q Consensus       258 ~Sr~~~--~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~  310 (340)
                      .+.+..  ..+++++...    . .. ..++..+|+|||+ .|++++++.|.+..
T Consensus       154 ~~~~~~~~~~g~v~~~~~----~-~~-~~~~~~v~icGp~-~mv~~~~~~l~~~g  201 (243)
T cd06192         154 TTDDGELGLEGKVTDSDK----P-IP-LEDVDRIIVAGSD-IMMKAVVEALDEWL  201 (243)
T ss_pred             EecCCCCccceeechhhh----h-hh-cccCCEEEEECCH-HHHHHHHHHHHhhc
Confidence            233322  2455554311    1 11 1235689999998 99999999988764

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=99.90  E-value=1.9e-23  Score=188.47  Aligned_cols=157  Identities=17%  Similarity=0.271  Sum_probs=119.7

Q ss_pred             CCHHHHHHhcCCC-------------------CcceeecCCCCCCCC--CeEEEEEEEEEecCCCCCccCCCCccccccC
Q 019521          103 MPIDWLVQLVPPL-------------------KTRAFSISSSPLAHP--NQVHLTVSVVSWTTPYKRKRTGLCSVWLAGL  161 (340)
Q Consensus       103 ~p~~~l~~~lp~~-------------------~pR~YSIaS~p~~~~--~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l  161 (340)
                      .||||+...+|..                   ..|+|||||+|..++  +.++|+|+.           .|.+|+||.++
T Consensus        27 ~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~~   95 (220)
T cd06197          27 TPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQV   95 (220)
T ss_pred             CCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHHh
Confidence            5788877766542                   359999999996542  789999853           28999999864


Q ss_pred             CCCC---CcEEEEEeecCCCCCCC----CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHH
Q 019521          162 DPQQ---GIYIPAWFQKGSLPRPP----PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE  234 (340)
Q Consensus       162 ~~~~---G~~v~v~~~~g~F~l~~----~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~  234 (340)
                      ....   |+.|.+.+|.|.|.++.    ..++++||||||||||++++++++......  ..++.|+||+|+.+|.+|.+
T Consensus        96 ~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~  173 (220)
T cd06197          96 ARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNT--TWDITLLWSLREDDLPLVMD  173 (220)
T ss_pred             hhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhcccC--CCcEEEEEEecchhhHHHHH
Confidence            3222   89999999999998862    357999999999999999999998764321  26899999999999999999


Q ss_pred             HHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          235 LWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       235 eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                      ||.++.+.  ..      .+... +                          ...||+|||+ +|++++.+.+.+
T Consensus       174 el~~~~~~--~~------~~~~~-~--------------------------~~~v~~CGP~-~m~~~~~~~~~~  211 (220)
T cd06197         174 TLVRFPGL--PV------STTLF-I--------------------------TSEVYLCGPP-ALEKAVLEWLEG  211 (220)
T ss_pred             HHHhccCC--ce------EEEEE-E--------------------------eccEEEECcH-HHHHHHHHHhhh
Confidence            99887532  11      11111 1                          1179999998 999988887664

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.90  E-value=5.8e-23  Score=189.09  Aligned_cols=170  Identities=18%  Similarity=0.221  Sum_probs=139.7

Q ss_pred             HHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC
Q 019521          105 IDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP  181 (340)
Q Consensus       105 ~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~  181 (340)
                      ++++...+|.   .--|+||..|++.. .+.++|.|++         ...|.+|.||.+|+.  ||+|.+++|.|.|.++
T Consensus        85 g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~---------Y~~G~mS~~l~~Lki--Gd~ve~rGP~G~~~~~  152 (286)
T KOG0534|consen   85 GQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKV---------YPKGKMSQHLDSLKI--GDTVEFRGPIGEFKYD  152 (286)
T ss_pred             ceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEe---------ccCCcccHHHhcCCC--CCEEEEecCccceEec
Confidence            4555555553   35899999999865 6899999864         466999999999999  9999999999999887


Q ss_pred             -CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCCCcEEEEEe
Q 019521          182 -PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFS  259 (340)
Q Consensus       182 -~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~~~~~~a~S  259 (340)
                       +..+.+.||||||||||+.++++++.....+  ..+++|+|++++.+|.++++||+.++.++. +|      ++..+.+
T Consensus       153 ~~~~~~l~miAgGtGItPmlqii~~il~~~~d--~tki~lly~N~te~DILlr~eL~~la~~~p~rf------~~~y~v~  224 (286)
T KOG0534|consen  153 PQKAKHLGMIAGGTGITPMLQLIRAILKDPED--TTKISLLYANKTEDDILLREELEELASKYPERF------KVWYVVD  224 (286)
T ss_pred             CCCcceEEEEecccchhhHHHHHHHHhcCCCC--CcEEEEEEecCCccccchHHHHHHHHhhCcceE------EEEEEEc
Confidence             6678999999999999999999999987553  478999999999999999999999998866 78      8888888


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhcC----CCEEEEeCCCCccHHH
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLLS----KASIYVAGSATKMPSD  301 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~~----~~~iyvCG~~~~M~~~  301 (340)
                      +++.    ..+||...+...      .+..    ...++||||+ +|.+.
T Consensus       225 ~~~~~w~~~~g~It~~~i~~------~l~~~~~~~~~~liCGPp-~m~~~  267 (286)
T KOG0534|consen  225 QPPEIWDGSVGFITKDLIKE------HLPPPKEGETLVLICGPP-PMING  267 (286)
T ss_pred             CCcccccCccCccCHHHHHh------hCCCCCCCCeEEEEECCH-HHHhH
Confidence            8763    367776433322      2322    4799999999 99874

>PLN02252 nitrate reductase [NADPH]

Probab=99.89  E-value=7.4e-23  Score=215.51  Aligned_cols=191  Identities=18%  Similarity=0.147  Sum_probs=141.8

Q ss_pred             CCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCC
Q 019521          103 MPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       103 ~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~  179 (340)
                      .||||+...++  . ...|+|||+|.+.. .+.++|+|+++......+....|.+|+||.++++  |+.|.+.+|.|.|.
T Consensus       666 ~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~v--Gd~V~V~GP~G~f~  742 (888)
T PLN02252        666 PVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPI--GDTIDVKGPLGHIE  742 (888)
T ss_pred             CCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCC--CCEEEEecCcccee
Confidence            47787766653  2 35799999999853 5789999987622111122246999999999999  99999999999764


Q ss_pred             C--------C-C--CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcC-CCcc
Q 019521          180 R--------P-P--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFS  247 (340)
Q Consensus       180 l--------~-~--~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~-g~l~  247 (340)
                      +        + .  ..++++|||+||||||++++++++......  ..+++||||+|+.+|++|++||+++.+.+ ++| 
T Consensus       743 y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d--~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~-  819 (888)
T PLN02252        743 YAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDPED--KTEMSLVYANRTEDDILLREELDRWAAEHPDRL-  819 (888)
T ss_pred             ecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhccCC--CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCE-
Confidence            3        2 1  247999999999999999999998765321  27899999999999999999999998765 578 


Q ss_pred             ccCCCcEEEEEecCC-C----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHH-HHHHHHH
Q 019521          248 EAKGGGFYVAFSRKQ-P----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE  308 (340)
Q Consensus       248 ~~~~~~~~~a~Sr~~-~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~-v~~~L~~  308 (340)
                           +++.++|++. .    .+++|++.+.+..   ......+..+|+|||+ +|.+. ++..|.+
T Consensus       820 -----~v~~vls~~~~~~w~g~~GrV~~~ll~~~---l~~~~~~~~vyiCGPp-~Mi~~av~~~L~~  877 (888)
T PLN02252        820 -----KVWYVVSQVKREGWKYSVGRVTEAMLREH---LPEGGDETLALMCGPP-PMIEFACQPNLEK  877 (888)
T ss_pred             -----EEEEEecCCCcCCCCCcCCcCCHHHHHHh---cccCCCCeEEEEeCCH-HHHHHHHHHHHHH
Confidence                 8888888753 1    3567766443221   1111235789999999 99874 6666654

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.88  E-value=7.3e-23  Score=190.23  Aligned_cols=175  Identities=17%  Similarity=0.203  Sum_probs=137.8

Q ss_pred             CCCHHHHHHhcCCC----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC
Q 019521          102 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       102 ~~p~~~l~~~lp~~----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g  176 (340)
                      .-+|||....++..    .|+|||||++...  .++++.|+.           .|..|.-|. ++++  |+++.+.+|+|
T Consensus       243 ~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~--G~k~~vdGPYG  307 (438)
T COG4097         243 YQAGQFAFLKIEIEEFRMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKV--GTKLEVDGPYG  307 (438)
T ss_pred             ccCCceEEEEeccccccCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccC--CceEEEecCcc
Confidence            46788877777654    4999999999753  478888753           599999998 5999  99999999999


Q ss_pred             CCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          177 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       177 ~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      .|...+....-|+||||+|||||+|+++....++..   .++.|||+||+.+|-+|.+||+++.+..+++      .++.
T Consensus       308 ~F~~~~g~~~QVWIAGGIGITPFis~l~~l~~~~s~---~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~~~------~lHi  378 (438)
T COG4097         308 KFDFERGLNTQVWIAGGIGITPFISMLFTLAERKSD---PPVHLFYCSRNWEEALYAEELRALAQKLPNV------VLHI  378 (438)
T ss_pred             eeecccCCcccEEEecCcCcchHHHHHHhhcccccC---CceEEEEEecCCchhHHHHHHHHHHhcCCCe------EEEE
Confidence            999874333489999999999999999998886655   8999999999999999999999999855777      6776


Q ss_pred             EEecCCCCccchh-hhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          257 AFSRKQPQKVYVQ-HKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       257 a~Sr~~~~~~yVq-d~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ..|.   +++|+. +.+....+.     .....||+|||. +|++++++.|++.
T Consensus       379 iDSs---~~g~l~~e~ler~~~~-----~~~~sv~fCGP~-~m~dsL~r~l~~~  423 (438)
T COG4097         379 IDSS---KDGYLDQEDLERYPDR-----PRTRSVFFCGPI-KMMDSLRRDLKKQ  423 (438)
T ss_pred             ecCC---CCCccCHHHhhccccc-----cCcceEEEEcCH-HHHHHHHHHHHHc
Confidence            4333   356663 333322111     114589999998 9999988888775

>PRK05802 hypothetical protein; Provisional

Probab=99.88  E-value=1.2e-22  Score=192.68  Aligned_cols=168  Identities=13%  Similarity=0.084  Sum_probs=128.6

Q ss_pred             CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC--C
Q 019521          103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--S  177 (340)
Q Consensus       103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g--~  177 (340)
                      .||||+...+|.   ...|+|||+|+|. ..+.++|+|++           .|..|++|.++++  |+.|.+.+|.|  .
T Consensus        96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~-~~g~l~l~ik~-----------~G~~T~~L~~l~~--Gd~l~v~GP~GnG~  161 (320)
T PRK05802         96 YPGSFVFLRNKNSSSFFDVPISIMEADT-EENIIKVAIEI-----------RGVKTKKIAKLNK--GDEILLRGPYWNGI  161 (320)
T ss_pred             CCCceEEEEEcCCCCEeEEeeEecccCC-CCCEEEEEEEe-----------cChhHHHHhcCCC--CCEEEEeCCCCcCc
Confidence            699999887753   3469999999985 35889999864           4899999999999  99999999985  4


Q ss_pred             CCCC----CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCc
Q 019521          178 LPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGG  253 (340)
Q Consensus       178 F~l~----~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~  253 (340)
                      |.++    ...+++++||+|+||||++++++++..+.     .+++|+||+|+++|++|.++|+++...   .      .
T Consensus       162 F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~-----~~v~li~g~r~~~~~~~~~el~~~~~~---~------~  227 (320)
T PRK05802        162 LGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG-----NKIIVIIDKGPFKNNFIKEYLELYNIE---I------I  227 (320)
T ss_pred             CCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC-----CcEEEEEeCCCHHHHHHHHHHHHhhCc---e------E
Confidence            6553    23468999999999999999999987653     469999999999999999999998644   1      1


Q ss_pred             EEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          254 FYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       254 ~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +..... +..    .+++|++.+.+.         +...||+|||. .|.+.|.+.+.+.
T Consensus       228 ~~~~~d-dG~~~~~~~g~v~~~l~~~---------~~~~vy~CGP~-~M~k~v~~~l~~~  276 (320)
T PRK05802        228 ELNLLD-DGELSEEGKDILKEIIKKE---------DINLIHCGGSD-ILHYKIIEYLDKL  276 (320)
T ss_pred             EEEecc-cCCCCccccchHHHHhcCC---------CCCEEEEECCH-HHHHHHHHHHhhh
Confidence            111111 211    133444444321         24789999998 9999999988774

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.87  E-value=7e-22  Score=215.28  Aligned_cols=185  Identities=15%  Similarity=0.174  Sum_probs=140.9

Q ss_pred             CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC--
Q 019521          102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG--  176 (340)
Q Consensus       102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g--  176 (340)
                      ..||||+...++  + ...|+|||+|.|. ..+.++|+|+          ...|.+|+||.++++  |++|.+.+|.|  
T Consensus       948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~-~~~~i~l~Vr----------~~~G~~S~~L~~l~~--Gd~v~v~gp~G~~ 1014 (1167)
T PTZ00306        948 LTLGQFIAIRGDWDGQQLIGYYSPITLPD-DLGVISILAR----------GDKGTLKEWISALRP--GDSVEMKACGGLR 1014 (1167)
T ss_pred             CCCCeEEEEEeeeCCeEEEEEeccCCCCC-CCCeEEEEEE----------cCCChhHHHHhhCCC--CCEEEEeCCcCcc
Confidence            378999887764  2 2469999999995 4578999874          246999999999999  99999999655  


Q ss_pred             --------CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-Cc
Q 019521          177 --------SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF  246 (340)
Q Consensus       177 --------~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l  246 (340)
                              .|.++ ...+|+||||+|||||||++|++++..........+++||||+|+.+|++|++||++|.+.++ +|
T Consensus      1015 ~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f 1094 (1167)
T PTZ00306       1015 IERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKF 1094 (1167)
T ss_pred             ccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCE
Confidence                    35555 556899999999999999999998876531011268999999999999999999999987644 58


Q ss_pred             cccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          247 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       247 ~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                            ++++++|+++.    ..++|++.+.+.   +......+..+|+|||+ +|.+.+++.|.+.
T Consensus      1095 ------~~~~~ls~~~~~w~~~~G~i~~~~l~~---~l~~~~~~~~vyiCGP~-~mv~~v~~~L~~~ 1151 (1167)
T PTZ00306       1095 ------KCHFVLNNPPEGWTDGVGFVDRALLQS---ALQPPSKDLLVAICGPP-VMQRAVKADLLAL 1151 (1167)
T ss_pred             ------EEEEEECCCCcccCCCCCCCCHHHHHH---hcCCCCCCeEEEEeCCH-HHHHHHHHHHHHc
Confidence                  88999987543    246666543222   11111235789999999 9999998888664

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.85  E-value=3.9e-21  Score=201.94  Aligned_cols=172  Identities=18%  Similarity=0.212  Sum_probs=134.8

Q ss_pred             CCCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEE-EEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI-PAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v-~v~~~~g~F~  179 (340)
                      ..||||+...++.. .+|+|||+|.+.. .+.++|+|+++           |..|.+|.++++  |+.| .+.+|.|.|.
T Consensus        28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~v-----------G~~T~~L~~l~~--Gd~v~~v~GP~G~~~   93 (752)
T PRK12778         28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQEV-----------GLSTTKLCELNE--GDYITDVVGPLGNPS   93 (752)
T ss_pred             CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEEc-----------CchHHHHhcCCC--CCEeCeEeCCCCCCc
Confidence            36999998887643 4689999998853 57899999653           899999999999  9999 7999999877


Q ss_pred             CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      .....++++|||+|+||||+++++++.....     .++++|||+|+.+|++|.+||+++...   +        .++ +
T Consensus        94 ~~~~~~~~llvaGG~GiaPl~~l~~~l~~~~-----~~v~l~~g~r~~~~l~~~~el~~~~~~---~--------~~~-t  156 (752)
T PRK12778         94 EIENYGTVVCAGGGVGVAPMLPIVKALKAAG-----NRVITILGGRSKELIILEDEMRESSDE---V--------IIM-T  156 (752)
T ss_pred             cCCCCCeEEEEECCEeHHHHHHHHHHHHHCC-----CeEEEEeccCCHHHhhhHHHHHhhcCe---E--------EEE-E
Confidence            6533479999999999999999999887653     579999999999999999999988643   2        111 2


Q ss_pred             cCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          260 RKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       260 r~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      .+.  ..+++|++.+.+....    ..+...||+|||+ +|++.+.+.+.+.
T Consensus       157 ~dg~~g~~G~v~~~l~~~~~~----~~~~~~vy~CGP~-~M~~~v~~~l~~~  203 (752)
T PRK12778        157 DDGSYGRKGLVTDGLEEVIKR----ETKVDKVFAIGPA-IMMKFVCLLTKKY  203 (752)
T ss_pred             CCCCCCCcccHHHHHHHHhhc----CCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence            222  2467888866543211    1124579999999 9999998887653

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.83  E-value=1.1e-20  Score=168.72  Aligned_cols=160  Identities=16%  Similarity=0.196  Sum_probs=122.3

Q ss_pred             CCCHHHHHHhcCCC----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCC------CCCCcEEEE
Q 019521          102 QMPIDWLVQLVPPL----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIPA  171 (340)
Q Consensus       102 ~~p~~~l~~~lp~~----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~v  171 (340)
                      ..||||+...+|..    +.|+|||+|.|....+.++|+|+.          ..|.+|..+..+.      .  |+.+.+
T Consensus        25 ~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~----------~~G~~t~~~~~~~~~~~~~~--~~~v~v   92 (210)
T cd06186          25 WKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRA----------KKGFTTRLLRKALKSPGGGV--SLKVLV   92 (210)
T ss_pred             cCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEe----------cCChHHHHHHHHHhCcCCCc--eeEEEE
Confidence            46899999888864    789999999985435889999853          2388888777775      6  899999


Q ss_pred             EeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCCch-hhhHHHHHHhHhcCCCccc
Q 019521          172 WFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNEDD-FLYRELWLSHSLNDGVFSE  248 (340)
Q Consensus       172 ~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~~d-~ly~~eL~~~~~~~g~l~~  248 (340)
                      .+|.|.+..+ ...+++||||+||||||++++++++....... ...++.|+|++|+.+| ..|.++|.+..+. .... 
T Consensus        93 ~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~~~~~~~l~~~~~~-~~~~-  170 (210)
T cd06186          93 EGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQEL-EVDG-  170 (210)
T ss_pred             ECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHhHHHHHHHHhhhhc-cCCc-
Confidence            9999988744 55679999999999999999999998764200 1278999999999997 5799999862111 1100 


Q ss_pred             cCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          249 AKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       249 ~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                          ++.+.+++                            +|+|||+ .|.+++++...+
T Consensus       171 ----~~~i~~T~----------------------------v~~CGp~-~~~~~~~~~~~~  197 (210)
T cd06186         171 ----EIEIYVTR----------------------------VVVCGPP-GLVDDVRNAVAK  197 (210)
T ss_pred             ----eEEEEEee----------------------------EEEECch-hhccHHHHHHhh
Confidence                12333332                            8999998 999999887776

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.83  E-value=1.6e-20  Score=170.91  Aligned_cols=169  Identities=15%  Similarity=0.131  Sum_probs=121.0

Q ss_pred             CCHHHHHHhcCC----------------------CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccC-CCCccccc
Q 019521          103 MPIDWLVQLVPP----------------------LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLA  159 (340)
Q Consensus       103 ~p~~~l~~~lp~----------------------~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~-G~~S~~L~  159 (340)
                      .||||+...+|.                      ...|+|||+|.+. ..+.++|.|..         ... |.+|+||.
T Consensus        28 ~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-~~~~l~~~v~~---------~~~~G~~s~~l~   97 (235)
T cd06193          28 GPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-EAGELDIDFVL---------HGDEGPASRWAA   97 (235)
T ss_pred             CCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-CCCEEEEEEEe---------CCCCCchHHHHh
Confidence            589998777653                      3469999999874 35889999853         234 99999999


Q ss_pred             cCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHh
Q 019521          160 GLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH  239 (340)
Q Consensus       160 ~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~  239 (340)
                      ++++  ||.|.+.+|.|.|.++...++++|||+||||||+++++++....      .+++++|++|+.+|.++.++    
T Consensus        98 ~l~~--Gd~v~v~gP~G~~~~~~~~~~~vlia~GtGi~p~~~il~~~~~~------~~~~~~~~~~~~~d~~~l~~----  165 (235)
T cd06193          98 SAQP--GDTLGIAGPGGSFLPPPDADWYLLAGDETALPAIAAILEELPAD------ARGTALIEVPDAADEQPLPA----  165 (235)
T ss_pred             hCCC--CCEEEEECCCCCCCCCCCcceEEEEeccchHHHHHHHHHhCCCC------CeEEEEEEECCHHHccccCC----
Confidence            9999  99999999999998875557999999999999999999977542      57999999999976543222    


Q ss_pred             HhcCCCccccCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          240 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       240 ~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                        . .++      +++.+.+.+.. .......+.   .. .....++..+|+|||+ .|++.+++.|.+
T Consensus       166 --~-~~~------~~~~~~~~~~~-~~~~~~~~~---~~-~~~~~~~~~vyicGp~-~mv~~v~~~l~~  219 (235)
T cd06193         166 --P-AGV------EVTWLHRGGAE-AGELALLAV---RA-LAPPAGDGYVWIAGEA-GAVRALRRHLRE  219 (235)
T ss_pred             --C-CCc------EEEEEeCCCCC-cchhHHHHH---hc-ccCCCCCeEEEEEccH-HHHHHHHHHHHH
Confidence              2 345      55555443332 111111000   00 0011235799999998 999888777654

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.80  E-value=3.1e-19  Score=190.22  Aligned_cols=180  Identities=11%  Similarity=0.033  Sum_probs=130.9

Q ss_pred             CCHHHHHHhcC-CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEE-EEeecCCCC-
Q 019521          103 MPIDWLVQLVP-PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP-AWFQKGSLP-  179 (340)
Q Consensus       103 ~p~~~l~~~lp-~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~-v~~~~g~F~-  179 (340)
                      .||||+...++ +-..|+|||+|.+. ..+.++|+|+.+           |..|.+|.++++  |+.+. +.+|.|.|. 
T Consensus       678 ~PGQFv~L~~~~~ge~rP~SIas~~~-~~g~i~l~Vk~v-----------G~~T~~L~~lk~--Gd~l~~I~GPlG~~f~  743 (944)
T PRK12779        678 QAGQFVRVLPWEKGELIPLTLADWDA-EKGTIDLVVQGM-----------GTSSLEINRMAI--GDAFSGIAGPLGRASE  743 (944)
T ss_pred             CCCceEEEEeCCCCCEEeEEccCCCC-CCCEEEEEEEee-----------ccHHHHHhcCCC--cCEEeeeecCCCCCcC
Confidence            59999887764 33459999999874 357899998643           888999999999  99995 999999764 


Q ss_pred             CC--CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHH---HHhHhcCCC-ccccCCCc
Q 019521          180 RP--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW---LSHSLNDGV-FSEAKGGG  253 (340)
Q Consensus       180 l~--~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL---~~~~~~~g~-l~~~~~~~  253 (340)
                      ++  ...++++|||||+||||+++++++....+     .+++|+||+|+.+|++|.+++   ++|.+.++. +      .
T Consensus       744 ~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-----~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~------~  812 (944)
T PRK12779        744 LHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-----NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQL------D  812 (944)
T ss_pred             CccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-----CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCe------E
Confidence            43  23479999999999999999999887643     579999999999898887664   555554342 3      4


Q ss_pred             EEEEEecCC--CCccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          254 FYVAFSRKQ--PQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       254 ~~~a~Sr~~--~~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++++ +.+.  ..+++|++.+.+..+.....-. ....||+|||+ +|++.+.+.+.+.
T Consensus       813 v~~t-tddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~~~Vy~CGP~-~Mmkav~~~l~~~  869 (944)
T PRK12779        813 VIYT-TNDGSFGVKGFVTGPLEEMLKANQQGKGRTIAEVIAIGPP-LMMRAVSDLTKPY  869 (944)
T ss_pred             EEEE-ecCCCCCCccccChHHHHHHHhcccccccCCcEEEEECCH-HHHHHHHHHHHHc
Confidence            4433 3332  2467888876543221100000 13679999999 9999998887654

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.79  E-value=3.2e-19  Score=142.53  Aligned_cols=104  Identities=23%  Similarity=0.333  Sum_probs=81.2

Q ss_pred             EEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCC-ccccCCCcEEEEEecCCC----
Q 019521          189 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV-FSEAKGGGFYVAFSRKQP----  263 (340)
Q Consensus       189 ~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~-l~~~~~~~~~~a~Sr~~~----  263 (340)
                      |||+|||||||+|+++++......   .+++||||+|+.+|++|+++|+++.+.... +      ++..+ ++.+.    
T Consensus         1 lIagGtGIaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~------~~~~~-~~~~~~~~~   70 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLERNDN---RKVTLFYGARTPEDLLFRDELEALAQEYPNRF------HVVYV-SSPDDGWDG   70 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHHTCT---SEEEEEEEESSGGGSTTHHHHHHHHHHSTTCE------EEEEE-TTTTSSTTS
T ss_pred             CeecceeHHHHHHHHHHHHHhCCC---CCEEEEEEEcccccccchhHHHHHHhhccccc------ccccc-cccccccCC
Confidence            799999999999999999987544   899999999999999999999999876333 5      44444 33322    


Q ss_pred             CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHH
Q 019521          264 QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWS  304 (340)
Q Consensus       264 ~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~  304 (340)
                      .++||++.+.+.... ......+..||+|||+ +|.++|++
T Consensus        71 ~~g~v~~~~~~~~~~-~~~~~~~~~v~iCGp~-~m~~~v~~  109 (109)
T PF00175_consen   71 FKGRVTDLLLEDLLP-EKIDPDDTHVYICGPP-PMMKAVRK  109 (109)
T ss_dssp             EESSHHHHHHHHHHH-HHHCTTTEEEEEEEEH-HHHHHHHH
T ss_pred             ceeehhHHHHHhhcc-cccCCCCCEEEEECCH-HHHHHhcC
Confidence            378999988655333 2222348999999998 99998864

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.79  E-value=5.3e-19  Score=189.85  Aligned_cols=171  Identities=13%  Similarity=0.123  Sum_probs=130.4

Q ss_pred             CCCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccc-ccCCCCCCcEE-EEEeecCCC
Q 019521          102 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQGIYI-PAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L-~~l~~~~G~~v-~v~~~~g~F  178 (340)
                      ..||||++..++. ..+|+|||++.+. ..+.++|.|++           .|..|.|| .++++  ||.| .+.+|.|.+
T Consensus        28 ~~PGQFV~l~~~~~~errplSIa~~~~-~~g~i~l~vk~-----------vG~~T~~L~~~lk~--Gd~l~~v~GPlG~~   93 (1006)
T PRK12775         28 AEPGHFVMLRLYEGAERIPLTVADFDR-KKGTITMVVQA-----------LGKTTREMMTKFKA--GDTFEDFVGPLGLP   93 (1006)
T ss_pred             CCCCeeEEEEeCCCCeeEEEEecCcCC-CCCEEEEEEEe-----------cCcHHHHHHhcCCC--CCEEeeeecCCCCC
Confidence            3699999888753 3579999999774 35789999864           38999998 58999  9999 799999976


Q ss_pred             CCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          179 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       179 ~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      ......++++|||||+||||+++++++....+     .+++++||+|+.++++|.+||+.+...   +        +++ 
T Consensus        94 ~~~~~~~~vllVaGGiGIAPl~s~~r~l~~~g-----~~v~li~g~R~~~~l~~~del~~~~~~---~--------~v~-  156 (1006)
T PRK12775         94 QHIDKAGHVVLVGGGLGVAPVYPQLRAFKEAG-----ARTTGIIGFRNKDLVFWEDKFGKYCDD---L--------IVC-  156 (1006)
T ss_pred             CCCCCCCeEEEEEEhHHHHHHHHHHHHHHhCC-----CcEEEEEeCCChHHcccHHHHHhhcCc---E--------EEE-
Confidence            54433478999999999999999999876643     569999999999999999999876532   2        222 


Q ss_pred             ecCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          259 SRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       259 Sr~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +.+.  ..+++|++.+.+..+.     .....+|+|||+ .|++.+.+.+++.
T Consensus       157 tddgs~G~~G~vt~~l~~~l~~-----~~~d~vy~CGP~-~Mm~av~~~~~~~  203 (1006)
T PRK12775        157 TDDGSYGKPGFVTAALKEVCEK-----DKPDLVVAIGPL-PMMNACVETTRPF  203 (1006)
T ss_pred             ECCCCCCCCCChHHHHHHHhcc-----CCCCEEEEECCH-HHHHHHHHHHHHC
Confidence            2222  2467888876543111     124589999999 9999998887653

>PLN02292 ferric-chelate reductase

Probab=99.65  E-value=7.8e-16  Score=158.19  Aligned_cols=172  Identities=18%  Similarity=0.207  Sum_probs=122.4

Q ss_pred             CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCc-----EEEEEe
Q 019521          103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI-----YIPAWF  173 (340)
Q Consensus       103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~-----~v~v~~  173 (340)
                      .|||++...+|.   .+.|||||+|+|..+++.++++|+.           .|..|++|.+ ++.  |+     +|.+.|
T Consensus       353 ~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~--gd~i~~~~V~VeG  419 (702)
T PLN02292        353 SPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSS--SDQIDRLAVSVEG  419 (702)
T ss_pred             CCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCC--CCccccceEEEEC
Confidence            689888777775   3789999999985456789999852           4778888874 566  77     467999


Q ss_pred             ecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHH-------hHhcC
Q 019521          174 QKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-------HSLND  243 (340)
Q Consensus       174 ~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~-------~~~~~  243 (340)
                      |+|.+..+ ...++++|||||+||||+++++++...+....  ...++.|+|++|+.+|..+.+++..       +.++ 
T Consensus       420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~-  498 (702)
T PLN02292        420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF-  498 (702)
T ss_pred             CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc-
Confidence            99987655 44579999999999999999999988754221  1267999999999999988765443       2233 


Q ss_pred             CCccccCCCcEEEEEecCCCCcc-chhhhHHHhHHHHHHhh-----cCCCEEEEeCCCCcc
Q 019521          244 GVFSEAKGGGFYVAFSRKQPQKV-YVQHKMLEQSQRIWNLL-----LSKASIYVAGSATKM  298 (340)
Q Consensus       244 g~l~~~~~~~~~~a~Sr~~~~~~-yVqd~l~~~~~~l~~~l-----~~~~~iyvCG~~~~M  298 (340)
                      .++      ++...++|+.+.+. |-++    ..+.+.+.+     .+...+.+|||+..+
T Consensus       499 ~~~------~i~iyvTr~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~Gp~~~~  549 (702)
T PLN02292        499 IDI------QIKAFVTREKEAGVKESTG----NMNIIKTLWFKPNLSDQPISPILGPNSWL  549 (702)
T ss_pred             CCc------eEEEEEeCCCCCCCccccc----chhhhhhhcCCCCCCCCceEEEeCCCchH
Confidence            456      78888888765321 1111    112221221     136789999998443

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=99.65  E-value=1.1e-15  Score=157.50  Aligned_cols=174  Identities=18%  Similarity=0.176  Sum_probs=125.0

Q ss_pred             CCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-----CCCCCC------cE
Q 019521          103 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-----LDPQQG------IY  168 (340)
Q Consensus       103 ~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-----l~~~~G------~~  168 (340)
                      .|||++...+|..   +.|+|||+|+|..+++.++++|++          . |-.|+.|.+     +.+  |      .+
T Consensus       340 ~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~----------~-gG~T~~L~~~i~~~l~~--g~~~~~~~~  406 (722)
T PLN02844        340 APTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC----------E-GGWTNSLYNKIQAELDS--ETNQMNCIP  406 (722)
T ss_pred             CCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe----------C-CCchHHHHHHHHhhccC--CCCcccceE
Confidence            6899988888754   689999999875556788998853          2 444555532     223  3      37


Q ss_pred             EEEEeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHH-----hH
Q 019521          169 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLS-----HS  240 (340)
Q Consensus       169 v~v~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~-----~~  240 (340)
                      +.+.+|+|.+..+ ...++++||||||||||+++++++...+....  ...++.|+|++|+.+|..|.+++..     +.
T Consensus       407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~  486 (722)
T PLN02844        407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSS  486 (722)
T ss_pred             EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHH
Confidence            8899999998766 44579999999999999999999998743211  1267999999999999999998763     22


Q ss_pred             hcCCCccccCCCcEEEEEecCCCCccchhhhHHHh--HHHHHHhhcCCCEEEEeCCCCc
Q 019521          241 LNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATK  297 (340)
Q Consensus       241 ~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~~--~~~l~~~l~~~~~iyvCG~~~~  297 (340)
                      +. .++      +++...+|++.....+++.+...  .+.++ +-.+...+.+||+...
T Consensus       487 ~~-~~l------kl~iyVTRE~~~~~rl~~~i~~~~~~~~~~-~~~~~~~~~i~G~~~~  537 (722)
T PLN02844        487 NQ-LNL------KLKVFVTQEEKPNATLRELLNQFSQVQTVN-FSTKCSRYAIHGLESF  537 (722)
T ss_pred             Hh-cCc------eEEEEECCCCCCCCchhhHhhccchhhhcC-CCCCCCceEEeCCCch
Confidence            33 355      77888999877555666666552  12222 1123678999999743

>PLN02631 ferric-chelate reductase

Probab=99.63  E-value=8.7e-16  Score=157.57  Aligned_cols=142  Identities=19%  Similarity=0.233  Sum_probs=111.5

Q ss_pred             CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCc--EEEEEeecC
Q 019521          103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGI--YIPAWFQKG  176 (340)
Q Consensus       103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~--~v~v~~~~g  176 (340)
                      .|||++...+|.   .+.|+|||+|+|..+++.++++|+           ..|..|++|.+ ++. .|+  +|.+.||+|
T Consensus       336 ~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK-----------~~Gg~T~~L~~~l~~-~g~~i~V~VeGPYG  403 (699)
T PLN02631        336 TPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIR-----------RQGSWTQKLYTHLSS-SIDSLEVSTEGPYG  403 (699)
T ss_pred             CCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEE-----------cCChHHHHHHHhhhc-CCCeeEEEEECCCC
Confidence            689998888775   467999999998545678999985           24888999974 432 144  677889999


Q ss_pred             CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHh------HhcCCCcc
Q 019521          177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSH------SLNDGVFS  247 (340)
Q Consensus       177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~------~~~~g~l~  247 (340)
                      .|..+ ...++++|||||+||||++|++++...+....  +.+++.|+|++|+.+|.+|.|||+.+      .++ -++ 
T Consensus       404 ~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~ni-  481 (699)
T PLN02631        404 PNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-LNL-  481 (699)
T ss_pred             CCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-Cce-
Confidence            87766 55678999999999999999999998754321  23589999999999999999999863      223 467 


Q ss_pred             ccCCCcEEEEEecCCC
Q 019521          248 EAKGGGFYVAFSRKQP  263 (340)
Q Consensus       248 ~~~~~~~~~a~Sr~~~  263 (340)
                           ++...+||+++
T Consensus       482 -----~i~iyVTR~~~  492 (699)
T PLN02631        482 -----RIEAYITREDK  492 (699)
T ss_pred             -----EEEEEEcCCCC
Confidence                 88888999754

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=99.38  E-value=1.7e-13  Score=123.01  Aligned_cols=176  Identities=21%  Similarity=0.263  Sum_probs=110.5

Q ss_pred             CCHHHHHH--hcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC
Q 019521          103 MPIDWLVQ--LVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       103 ~p~~~l~~--~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g  176 (340)
                      .|||++..  ..|++   .-|.||.+++.....+.+.|.|+         +...|+.|+|++ ++++  ||.|.++.|.|
T Consensus       182 ~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr---------~~A~G~VS~~~H~~~KV--GD~v~~S~PAG  250 (385)
T KOG3378|consen  182 HPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVR---------RVAGGVVSNFVHDNLKV--GDIVGVSPPAG  250 (385)
T ss_pred             CCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEe---------ehhchhhHHHhhccccc--cceeeccCCCc
Confidence            57887543  34544   24666666655445688999984         446799999998 7999  99999999999


Q ss_pred             CCCCC----CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCC
Q 019521          177 SLPRP----PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGG  252 (340)
Q Consensus       177 ~F~l~----~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~  252 (340)
                      .|.+.    +.++|++++|+|+||+|++++++....-...   +++   +.--..-|.-|++-+                
T Consensus       251 ~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~C~~~---RP~---~~~~~~~~~K~k~~~----------------  308 (385)
T KOG3378|consen  251 NFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALLCYSS---RPF---KQWLEQLKLKYKENL----------------  308 (385)
T ss_pred             cceeehhhhccCCceEEecCCcCccccHHHHHHHHhcCCC---CcH---HHHHHHHHHHHHHHH----------------
Confidence            99875    6779999999999999999999987652221   111   000000011122111                


Q ss_pred             cEEEEEecCCC--CccchhhhHHHh--HHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHH
Q 019521          253 GFYVAFSRKQP--QKVYVQHKMLEQ--SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK  312 (340)
Q Consensus       253 ~~~~a~Sr~~~--~~~yVqd~l~~~--~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~  312 (340)
                      ++.-.||.+..  ++..|...+...  .+.+-++-...++||.|||. .+++.|.+.|.++..+
T Consensus       309 K~~e~~~~E~s~~~~~IV~~~~~~iI~~~~L~~~~~s~~DiY~~G~~-~~M~~~~~~L~~L~~~  371 (385)
T KOG3378|consen  309 KLKEFFSEESSVTKEQIVDEVMTRIINEEDLEKLDLSECDIYMLGPN-NYMRFVKQELVKLGVE  371 (385)
T ss_pred             HHHHHHHHhhccchhhhhhhhhhhhcCHHHhhhcChhhCceeeeCcH-HHHHHHHHHHHHhcCC
Confidence            11111222211  123333333221  22222222238999999998 8889999999987554

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=98.92  E-value=3.7e-09  Score=89.74  Aligned_cols=72  Identities=15%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             CCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchh-hhHHHHHHhHhcC--CCccccCCCcEEEEEe
Q 019521          185 VPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDF-LYRELWLSHSLND--GVFSEAKGGGFYVAFS  259 (340)
Q Consensus       185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~-ly~~eL~~~~~~~--g~l~~~~~~~~~~a~S  259 (340)
                      ..++|||||+||+|+++++++.......+  ...++.|+|..|+.+++ .|.++|+++....  ..+      ++.+.++
T Consensus         2 ~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~------~~~iyvT   75 (156)
T PF08030_consen    2 DNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNV------EVHIYVT   75 (156)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSE------EEEEEET
T ss_pred             CEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccc------eEEEEEc
Confidence            35899999999999999999998765411  45789999999999944 6776666554321  356      6777776


Q ss_pred             cCC
Q 019521          260 RKQ  262 (340)
Q Consensus       260 r~~  262 (340)
                      ++.
T Consensus        76 ~~~   78 (156)
T PF08030_consen   76 RES   78 (156)
T ss_dssp             T--
T ss_pred             CCc
Confidence            654

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.88  E-value=7.5e-09  Score=106.94  Aligned_cols=126  Identities=20%  Similarity=0.317  Sum_probs=91.3

Q ss_pred             CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CC----C--CC----CcE
Q 019521          103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LD----P--QQ----GIY  168 (340)
Q Consensus       103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~----~--~~----G~~  168 (340)
                      .|||++...+|.   ++.+||||+|+|  +++.+.++|+.+           |..|+-|.+ +.    +  .+    .-+
T Consensus       383 ~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~~~  449 (646)
T KOG0039|consen  383 KPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPFPK  449 (646)
T ss_pred             CCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccCce
Confidence            579998888885   489999999999  468999999754           555555531 11    0  01    347


Q ss_pred             EEEEeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-------------CCCCEEEEEeccCCchh-hhH
Q 019521          169 IPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-------------PAAPIIFFFGCRNEDDF-LYR  233 (340)
Q Consensus       169 v~v~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-------------~~~~~~L~~G~R~~~d~-ly~  233 (340)
                      +.+.||+|.=..+ ..-..++|||+|.|++||.|++++.......+             ..+++..+|-||...++ .+.
T Consensus       450 i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~  529 (646)
T KOG0039|consen  450 ILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFK  529 (646)
T ss_pred             EEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHHHH
Confidence            8899999965544 44457799999999999999999999864322             24677888888888844 456


Q ss_pred             HHHHHhHh
Q 019521          234 ELWLSHSL  241 (340)
Q Consensus       234 ~eL~~~~~  241 (340)
                      +.+.+..+
T Consensus       530 ~~l~~v~~  537 (646)
T KOG0039|consen  530 GLLTEVEE  537 (646)
T ss_pred             HHHHHHHH
Confidence            66665553

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.60  E-value=6.8e-08  Score=102.34  Aligned_cols=81  Identities=14%  Similarity=0.065  Sum_probs=69.0

Q ss_pred             CCHHHHHHhcCC-----C-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC
Q 019521          103 MPIDWLVQLVPP-----L-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       103 ~p~~~l~~~lp~-----~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g  176 (340)
                      .||||++...+.     + .||++||++.+.. .+.++|+|.+|           |..|..|+++++  |+.+.+.||.|
T Consensus       820 kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rvV-----------GkgT~~Ls~l~~--Gd~v~v~GPLG  885 (1028)
T PRK06567        820 KFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFEV-----------GKSTSLCKTLSE--NEKVVLMGPTG  885 (1028)
T ss_pred             CCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEEE-----------ChHHHHHhcCCC--CCEEEEEcccC
Confidence            599999887742     2 6789999998643 57899999877           999999999999  99999999999


Q ss_pred             -CCCCCCCCCCeEEEeCCcchhh
Q 019521          177 -SLPRPPPSVPLILIGPGTGCAP  198 (340)
Q Consensus       177 -~F~l~~~~~pii~Ia~GtGIAP  198 (340)
                       .|..+. .+.+++||||+|+||
T Consensus       886 ~pF~i~~-~k~vLLVgGGVGiAp  907 (1028)
T PRK06567        886 SPLEIPQ-NKKIVIVDFEVGNIG  907 (1028)
T ss_pred             CCCCCCC-CCeEEEEEccccHHH
Confidence             577763 368999999999998

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=98.56  E-value=1e-08  Score=80.40  Aligned_cols=66  Identities=23%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521          102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F  178 (340)
                      ..|||++...++.   ...|+|||+|.|. ..+.++|+|+.         ...|.+|+||.++++  ||.|.+.+|.|.|
T Consensus        30 ~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~-~~~~~~~~ik~---------~~~G~~S~~L~~l~~--Gd~v~i~gP~G~f   97 (99)
T PF00970_consen   30 FKPGQFVSVRVPINGKQVSRPYSPASSPD-DKGYLEFAIKR---------YPNGRVSRYLHQLKP--GDEVEIRGPYGNF   97 (99)
T ss_dssp             STTT-EEEEEEEETTEEEEEEEEBCSSTT-SSSEEEEEEEE---------CTTSHHHHHHHTSCT--TSEEEEEEEESSE
T ss_pred             cCcceEEEEEEccCCcceecceeEeeecC-CCCcEEEEEEe---------ccCCHHHHHHHhCCC--CCEEEEEEccccc
Confidence            3689998888882   3469999999995 46799999854         478999999999999  9999999999998


Q ss_pred             C
Q 019521          179 P  179 (340)
Q Consensus       179 ~  179 (340)
                      .
T Consensus        98 ~   98 (99)
T PF00970_consen   98 T   98 (99)
T ss_dssp             E
T ss_pred             C
Confidence            5

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=97.86  E-value=0.0003  Score=64.62  Aligned_cols=167  Identities=16%  Similarity=0.217  Sum_probs=107.5

Q ss_pred             CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeEEEeCCc
Q 019521          115 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGT  194 (340)
Q Consensus       115 ~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii~Ia~Gt  194 (340)
                      .-+|.|||.+-.. ..+++.|-|  |      -....|.+|.|-.+.++  ||+|.+.+|.|.+..+....-++|||==|
T Consensus        85 ~~~R~YTiR~~d~-~~~e~~vDf--V------lH~~~gpas~WA~~a~~--GD~l~i~GP~g~~~p~~~~~~~lLigDet  153 (265)
T COG2375          85 PPQRTYTIRAVDA-AAGELDVDF--V------LHGEGGPASRWARTAQP--GDTLTIMGPRGSLVPPEAADWYLLIGDET  153 (265)
T ss_pred             CCcccceeeeecc-cccEEEEEE--E------EcCCCCcchhhHhhCCC--CCEEEEeCCCCCCCCCCCcceEEEecccc
Confidence            3589999986542 234444443  3      22368999999999999  99999999999987776667899999999


Q ss_pred             chhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCCCccchhhhHHH
Q 019521          195 GCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLE  274 (340)
Q Consensus       195 GIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~~~~yVqd~l~~  274 (340)
                      ++-.+.++|++.-..      .+...|.-..+..|.   .+   +... +.+      .+.-. .|++..  + ...+..
T Consensus       154 AlPAIa~iLE~lp~~------~~~~a~lev~d~ad~---~~---l~~~-~~l------~~~Wl-~r~~~~--~-~~ll~~  210 (265)
T COG2375         154 ALPAIARILETLPAD------TPAEAFLEVDDAADR---DE---LPSP-DDL------ELEWL-ARDDAP--T-EQLLAA  210 (265)
T ss_pred             chHHHHHHHHhCCCC------CceEEEEEeCChHHh---hc---cCCC-Cce------eEEEe-cCCCcc--c-hHHHHH
Confidence            999999998876543      455777777777765   22   2222 334      33332 333221  1 112222


Q ss_pred             hHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHH
Q 019521          275 QSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA  322 (340)
Q Consensus       275 ~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~  322 (340)
                      ...+.  .+.+ +.++||.|-. .+++    .+++.+.++.|+++....
T Consensus       211 a~~~~--~~P~~~~~vwiagE~-~~v~----~~Rk~L~~e~g~dk~~i~  252 (265)
T COG2375         211 ALAQA--ALPAGDYYVWIAGEA-SAVK----AIRKFLRNERGFDKSRVR  252 (265)
T ss_pred             HHhcc--cCCCCceEEEEeccH-HHHH----HHHHHHhhhcCCCHHHhh
Confidence            21110  1122 4799999997 5555    456666667777766543

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=94.32  E-value=0.0064  Score=48.19  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=4.1

Q ss_pred             CCCHHHHHHhcCCC-----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCC------CCCCcEEE
Q 019521          102 QMPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLD------PQQGIYIP  170 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~------~~~G~~v~  170 (340)
                      -.|||++...+|.+     +.+||||+|+|.  ++.+.++|+.           .|-.|..|.+..      ...+-++.
T Consensus        30 ~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~~~~~~~~~~~~~~v~   96 (105)
T PF08022_consen   30 WKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEHLSESPSKQGNRLRVF   96 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHHHhhhcccCCCceEEE
Confidence            36999999988854     678999999996  5889998853           355666665431      10134555


Q ss_pred             EEeecC
Q 019521          171 AWFQKG  176 (340)
Q Consensus       171 v~~~~g  176 (340)
                      +.||+|
T Consensus        97 idGPYG  102 (105)
T PF08022_consen   97 IDGPYG  102 (105)
T ss_dssp             TTSTTS
T ss_pred             EECCCC
Confidence            666776

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins

Probab=93.18  E-value=0.04  Score=44.57  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521          116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       116 ~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F  178 (340)
                      ..|.|||.+.... .+++.|-|.+        ....|.+|.|..+.++  ||.|.+.+|.|.|
T Consensus        66 ~~R~YTvR~~d~~-~~~l~iDfv~--------Hg~~Gpas~WA~~A~p--Gd~v~v~gP~g~~  117 (117)
T PF08021_consen   66 VMRTYTVRRFDPE-TGELDIDFVL--------HGDEGPASRWARSARP--GDRVGVTGPRGSF  117 (117)
T ss_dssp             EEEEEE--EEETT---EEEEEEE----------SS--HHHHHHHH--T--T-EEEEEEEE---
T ss_pred             CCCCcCEeeEcCC-CCEEEEEEEE--------CCCCCchHHHHhhCCC--CCEEEEeCCCCCC
Confidence            5799999987532 3566665532        2234999999999999  9999999999887

This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
3fjo_A	637	Structure Of Chimeric Yh Cpr Length = 637		7e-51
3qfs_A	458	Crystal Structure Of Nadph-Cytochrome P450 Reductas		8e-51
3qe2_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 Re		1e-50
3qfc_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 (V		3e-50
3qft_A	458	Crystal Structure Of Nadph-Cytochrome P450 Reductas		4e-50
3qfr_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 Re		7e-50
1amo_A	615	Three-Dimensional Structure Of Nadph-Cytochrome P45		1e-48
3es9_A	618	Nadph-Cytochrome P450 Reductase In An Open Conforma		1e-48
1ja1_A	622	Cypor-Triple Mutant Length = 622		2e-48
3ojx_A	622	Disulfide Crosslinked Cytochrome P450 Reductase Ina		9e-48
1j9z_A	622	Cypor-W677g Length = 622		2e-47
1ja0_A	620	Cypor-W677x Length = 620		5e-47
1tll_A	688	Crystal Structure Of Rat Neuronal Nitric-Oxide Synt		2e-36
1f20_A	435	Crystal Structure Of Rat Neuronal Nitric-Oxide Synt		2e-36
2qtz_A	539	Crystal Structure Of The Nadp+-Bound Fad-Containing		5e-35
2qtl_A	539	Crystal Structure Of The Fad-Containing Fnr-Like Mo		6e-35
4dql_A	393	Crystal Structure Of The Fad Binding Domain Of Cyto		1e-33
4dqk_A	391	Crystal Structure Of The Fad Binding Domain Of Cyto		1e-33
1ddg_A	374	Crystal Structure Of Sir-Fp60 Length = 374		2e-30
2bpo_A	682	Crystal Structure Of The Yeast Cpr Triple Mutant: D		4e-24
2bf4_A	682	A Second Fmn-Binding Site In Yeast Nadph-Cytochrome		4e-24
3vo1_A	314	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		2e-12
3vo2_A	310	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		2e-11
1jb9_A	316	Crystal Structure Of The Ferredoxin:nadp+ Reductase		4e-11
3lvb_A	311	Crystal Structure Of The Ferredoxin:nadp+ Reductase		4e-11
3lo8_A	311	Crystal Structure Of The Oxidized Form Of Ferredoxi		1e-10
1gaq_A	314	Crystal Structure Of The Complex Between Ferredoxin		1e-10
1sm4_A	296	Crystal Structure Analysis Of The Ferredoxin-Nadp+		3e-10
1w35_A	304	Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Leng		6e-10
1qga_A	308	Pea Fnr Y308w Mutant In Complex With Nadp+ Length =		2e-09
1qh0_A	295	Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutat		3e-09
1h85_A	295	Ferredoxin:nadp+ Reductase Mutant With Val 136 Repl		4e-09
1quf_A	304	X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+		4e-09
1go2_A	304	Structure Of Ferredoxin-nadp+ Reductase With Lys 72		4e-09
1gr1_A	303	Structure Of Ferredoxin-Nadp+ Reductase With Glu 13		4e-09
1gjr_A	304	Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By		4e-09
1bjk_A	295	Ferredoxin:nadp+ Reductase Mutant With Arg 264 Repl		4e-09
1que_A	303	X-Ray Structure Of The Ferredoxin:nadp+ Reductase F		4e-09
1ogj_A	303	Ferredoxin:nadp+ Reductase Mutant With Leu 263 Repl		5e-09
1qgz_A	295	Ferredoxin:nadp+ Reductase Mutant With Leu 78 Repla		5e-09
1ewy_A	303	Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reduct		5e-09
1bqe_A	295	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		6e-09
1w34_A	304	Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Lengt		8e-09
1e62_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		8e-09
2x3u_A	303	Ferredoxin-Nadp Reductase Mutant With Tyr 303 Repla		8e-09
2bsa_A	303	Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Compl		1e-08
1e64_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		1e-08
1qgy_A	295	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		1e-08
4af6_A	308	Pea Fnr L268v Mutant Length = 308		1e-08
1e63_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		2e-08
1ogi_A	303	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		2e-08
1h42_A	304	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		2e-08
1qg0_A	308	Wild-type Pea Fnr Length = 308		2e-08
2bmw_A	304	Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl		2e-08
3mhp_A	296	Fnr-Recruitment To The Thylakoid Length = 296		2e-08
1b2r_A	304	Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Leng		2e-08
4af7_A	308	Pea Fnr C266m Mutant Length = 308		2e-08
1qfy_A	308	Pea Fnr Y308s Mutant In Complex With Nadp+ Length =		3e-08
2vyq_A	304	Ferredoxin:nadp Reductase Mutant With Thr 155 Repla		4e-08
2xnc_A	315	Crystal Structure Of An Engineered Ferredoxin Nadp		2e-07
1fnb_A	314	Refined Crystal Structure Of Spinach Ferredoxin Red		3e-07
1bx1_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		4e-07
1frn_A	314	The Involvement Of Ser96 In The Catalytic Mechanism		7e-07
1bx0_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		7e-07
1frq_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		8e-07
2rc5_A	314	Refined Structure Of Fnr From Leptospira Interrogan		5e-06
2b5o_A	402	Ferredoxin-nadp Reductase Length = 402		8e-04

>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr Length = 637

Iteration: 1
 Score =  197 bits (501), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 16/322 (4%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L+  AS   EG++    +  
Sbjct: 323 CPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVV 381
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D PS++ PID L +L+P L+ R +SI+SS   HPN VH+   VV + T 
Sbjct: 382 EARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETK 441
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 442 AGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFI 501
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 502 GFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYRE-ELAQFHRDGALTQ-----LNVAF 555
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           SR+Q  KVYVQH + +  + +W L+   A IYV G A  M  DV +TF +IV++ G    
Sbjct: 556 SREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEH 615
Query: 319 DSAANWLKALQRAGRYHVEAWS 340
             A +++K L   GRY ++ WS
Sbjct: 616 AQAVDYIKKLMTKGRYSLDVWS 637

>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH Domain) Length = 458

Iteration: 1
 Score =  197 bits (501), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 16/322 (4%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L+  AS   EG++    +  
Sbjct: 144 CPTSYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVV 202
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D PS++ PID L +L+P L+ R +SI+SS   HPN VH+   VV + T 
Sbjct: 203 EARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETK 262
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 263 AGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFI 322
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 323 GFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYRE-ELAQFHRDGALTQ-----LNVAF 376
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           SR+Q  KVYVQH + +  + +W L+   A IYV G A  M  DV +TF +IV++ G    
Sbjct: 377 SREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEH 436
Query: 319 DSAANWLKALQRAGRYHVEAWS 340
             A +++K L   GRY ++ WS
Sbjct: 437 AQAVDYIKKLMTKGRYSLDVWS 458

>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase Length = 618

Iteration: 1
 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 177/322 (54%), Gaps = 16/322 (4%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L+  AS   EG++    +  
Sbjct: 304 CPTSYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVV 362
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D PS++ PID L +L+P L+ R +SI+SS   HPN VH+   VV + T 
Sbjct: 363 EARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETK 422
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 423 AGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFI 482
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 483 GFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYRE-ELAQFHRDGALTQ-----LNVAF 536
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           SR+Q  KVYVQH + +  + +W L+   A IYV G A  M  DV +TF +IV++ G    
Sbjct: 537 SREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEH 596
Query: 319 DSAANWLKALQRAGRYHVEAWS 340
             A +++K L   GRY ++ WS
Sbjct: 597 AQAVDYIKKLMTKGRYSLDVWS 618

>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Mutant) Length = 618

Iteration: 1
 Score =  195 bits (496), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 114/322 (35%), Positives = 176/322 (54%), Gaps = 16/322 (4%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L+  AS   EG++    +  
Sbjct: 304 CPTSYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVV 362
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D PS++ PID L +L+P L+ R +SI+SS   HPN VH+   VV + T 
Sbjct: 363 EARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETK 422
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G  + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 423 AGRINKGEATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFI 482
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 483 GFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYRE-ELAQFHRDGALTQ-----LNVAF 536
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           SR+Q  KVYVQH + +  + +W L+   A IYV G A  M  DV +TF +IV++ G    
Sbjct: 537 SREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEH 596
Query: 319 DSAANWLKALQRAGRYHVEAWS 340
             A +++K L   GRY ++ WS
Sbjct: 597 AQAVDYIKKLMTKGRYSLDVWS 618

>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH DOMAIN And R457h Mutant) Length = 458

Iteration: 1
 Score =  195 bits (495), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/322 (35%), Positives = 176/322 (54%), Gaps = 16/322 (4%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L+  AS   EG++    +  
Sbjct: 144 CPTSYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVV 202
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D PS++ PID L +L+P L+   +SI+SS   HPN VH+   VV + T 
Sbjct: 203 EARRHILAILQDCPSLRPPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICAVVVEYETK 262
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 263 AGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFI 322
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 323 GFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYRE-ELAQFHRDGALTQ-----LNVAF 376
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           SR+Q  KVYVQH + +  + +W L+   A IYV G A  M  DV +TF +IV++ G    
Sbjct: 377 SREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEH 436
Query: 319 DSAANWLKALQRAGRYHVEAWS 340
             A +++K L   GRY ++ WS
Sbjct: 437 AQAVDYIKKLMTKGRYSLDVWS 458

>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase (R457h Mutant) Length = 618

Iteration: 1
 Score =  194 bits (493), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 113/322 (35%), Positives = 176/322 (54%), Gaps = 16/322 (4%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L+  AS   EG++    +  
Sbjct: 304 CPTSYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVV 362
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D PS++ PID L +L+P L+   +SI+SS   HPN VH+   VV + T 
Sbjct: 363 EARRHILAILQDCPSLRPPIDHLCELLPRLQAHYYSIASSSKVHPNSVHICAVVVEYETK 422
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 423 AGRINKGVATNWLRAKEPAGENGGRALVPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFI 482
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 483 GFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYRE-ELAQFHRDGALTQ-----LNVAF 536
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           SR+Q  KVYVQH + +  + +W L+   A IYV G A  M  DV +TF +IV++ G    
Sbjct: 537 SREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEH 596
Query: 319 DSAANWLKALQRAGRYHVEAWS 340
             A +++K L   GRY ++ WS
Sbjct: 597 AQAVDYIKKLMTKGRYSLDVWS 618

>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450 Reductase: Prototype For Fmn-And Fad-Containing Enzymes Length = 615

Iteration: 1
 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 174/323 (53%), Gaps = 17/323 (5%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L   AS   EG++    +  
Sbjct: 300 CPTTYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVV 358
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D+PS++ PID L +L+P L+ R +SI+SS   HPN VH+    V +   
Sbjct: 359 EARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAK 418
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 419 SGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFM 478
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 479 GFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYRE-ELARFHKDGALTQ-----LNVAF 532
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 317
           SR+Q  KVYVQH +    + +W L+    A IYV G A  M  DV +TF +IV++ G   
Sbjct: 533 SREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 592
Query: 318 RDSAANWLKALQRAGRYHVEAWS 340
              A +++K L   GRY ++ WS
Sbjct: 593 HTQAVDYVKKLMTKGRYSLDVWS 615

>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation Length = 618

Iteration: 1
 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 174/323 (53%), Gaps = 17/323 (5%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L   AS   EG++    +  
Sbjct: 303 CPTTYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVV 361
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D+PS++ PID L +L+P L+ R +SI+SS   HPN VH+    V +   
Sbjct: 362 EARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAK 421
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 422 SGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFM 481
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 482 GFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYRE-ELARFHKDGALTQ-----LNVAF 535
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 317
           SR+Q  KVYVQH +    + +W L+    A IYV G A  M  DV +TF +IV++ G   
Sbjct: 536 SREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 595
Query: 318 RDSAANWLKALQRAGRYHVEAWS 340
              A +++K L   GRY ++ WS
Sbjct: 596 HTQAVDYVKKLMTKGRYSLDVWS 618

>pdb|1JA1|A Chain A, Cypor-Triple Mutant Length = 622

Iteration: 1
 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 174/323 (53%), Gaps = 17/323 (5%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L   AS   EG++    +  
Sbjct: 307 CPTTYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVV 365
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D+PS++ PID L +L+P L+ R ++I+SS   HPN VH+    V +   
Sbjct: 366 EARRHILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAK 425
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 426 SGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFM 485
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 486 GFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYRE-ELARFHKDGALTQ-----LNVAF 539
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 317
           SR+Q  KVYVQH +    + +W L+    A IYVAG A  M  DV +TF +IV++ G   
Sbjct: 540 SREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPME 599
Query: 318 RDSAANWLKALQRAGRYHVEAWS 340
              A +++K L   GRY +  WS
Sbjct: 600 HTQAVDYVKKLMTKGRYSLNVWS 622

>pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive Length = 622

Iteration: 1
 Score =  187 bits (474), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 174/323 (53%), Gaps = 17/323 (5%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L   AS   EG++    +  
Sbjct: 307 TPTTYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVV 365
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D+PS++ PID L++L+P L+ R +SI+SS   HPN VH+T   V +   
Sbjct: 366 EARRHILAILQDYPSLRPPIDHLLELLPRLQARYYSIASSSKVHPNSVHITAVAVEYEAK 425
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P +  K     P   + P+I++GPGTG APF 
Sbjct: 426 SGRVNKGVATSWLRAKEPAGENGGRALVPMFVCKSQFRLPFKSTTPVIMVGPGTGIAPFM 485
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++G R  D D+LYRE  L+    DG  ++       VAF
Sbjct: 486 GFIQERAWLREQGKEVGETLLYYGARRSDEDYLYRE-ELARFHKDGALTQ-----LNVAF 539
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 317
           SR+Q  KVYVQH +    + +W L+    A IYV G A  M  DV +TF +IV++ G   
Sbjct: 540 SREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 599
Query: 318 RDSAANWLKALQRAGRYHVEAWS 340
              A +++K L   GRY ++ WS
Sbjct: 600 HTQAVDYVKKLMTKGRYSLDVWS 622

>pdb|1J9Z|A Chain A, Cypor-W677g Length = 622

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/323 (34%), Positives = 173/323 (53%), Gaps = 17/323 (5%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L   AS   EG++    +  
Sbjct: 307 CPTTYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVV 365
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D+PS++ PID L +L+P L+ R +SI+SS   HPN VH+    V +   
Sbjct: 366 EARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAK 425
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 426 SGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFM 485
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 486 GFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYRE-ELARFHKDGALTQ-----LNVAF 539
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 317
           SR+Q  KVYVQH +    + +W L+    A IYV G A  M  DV +TF +IV++ G   
Sbjct: 540 SREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 599
Query: 318 RDSAANWLKALQRAGRYHVEAWS 340
              A +++K L   GRY ++  S
Sbjct: 600 HTQAVDYVKKLMTKGRYSLDVGS 622

>pdb|1JA0|A Chain A, Cypor-W677x Length = 620

Iteration: 1
 Score =  184 bits (468), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 172/320 (53%), Gaps = 17/320 (5%)
Query: 28  VPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQ 85
            P   RT +   +D+T+  PR      ++ +A+   E+E L   AS   EG++    +  
Sbjct: 307 CPTTYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVV 365
Query: 86  KERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP 145
           + RR +L +L+D+PS++ PID L +L+P L+ R +SI+SS   HPN VH+    V +   
Sbjct: 366 EARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAK 425
Query: 146 YKRKRTGLCSVWLAGLDP--QQG--IYIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFR 200
             R   G+ + WL   +P  + G    +P + +K     P   + P+I++GPGTG APF 
Sbjct: 426 SGRVNKGVATSWLRAKEPAGENGGRALVPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFM 485
Query: 201 GFVEERA-IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA ++         + ++GCR  D D+LYRE  L+    DG  ++       VAF
Sbjct: 486 GFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYRE-ELARFHKDGALTQ-----LNVAF 539
Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEAS 317
           SR+Q  KVYVQH +    + +W L+    A IYV G A  M  DV +TF +IV++ G   
Sbjct: 540 SREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVCGDARNMAKDVQNTFYDIVAEFGPME 599
Query: 318 RDSAANWLKALQRAGRYHVE 337
              A +++K L   GRY ++
Sbjct: 600 HTQAVDYVKKLMTKGRYSLD 619

>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase Reductase Module At 2.3 A Resolution. Length = 688

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 28/309 (9%)
Query: 40  MDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 99
           +D+T+  P     +  +  AT E EK+RL   +  +G  +  ++   +  T++EVLE+FP
Sbjct: 357 LDITTP-PTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPTMVEVLEEFP 413
Query: 100 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK--RTGLCSVW 157
           S+QMP   L+  +  L+ R +SISSSP  +P++VHLTV++VS+ T         G+CS W
Sbjct: 414 SIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSW 473
Query: 158 LAGLDPQQGIYIPAWFQKGS----LPRPPPSVPLILIGPGTGCAPFRGFVEERA--IQSS 211
           L  +  Q    +P  F +G+    LPR  P VP IL+GPGTG APFR F ++R   IQ  
Sbjct: 474 LNRI--QADDVVPC-FVRGAPSFHLPR-NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK 529
Query: 212 SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK--QPQKVYV 268
                P++  FGCR    D +YRE  L  + N GVF E      Y A+SR+  +P+K YV
Sbjct: 530 GMNPCPMVLVFGCRQSKIDHIYREETL-QAKNKGVFRE-----LYTAYSREPDRPKK-YV 582
Query: 269 QHKMLEQ-SQRIWNLLLSKAS-IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLK 326
           Q  + EQ ++ ++  L  +   IYV G  T M +DV    + I++++G+ S + A  ++ 
Sbjct: 583 QDVLQEQLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLSEEDAGVFIS 641
Query: 327 ALQRAGRYH 335
            L+   RYH
Sbjct: 642 RLRDDNRYH 650

>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase FadNADP+ Domain At 1.9a Resolution Length = 435

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 28/309 (9%)
Query: 40  MDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP 99
           +D+T+  P     +  +  AT E EK+RL   +  +G  +  ++   +  T++EVLE+FP
Sbjct: 136 LDITTP-PTPLQLQQFASLATNEKEKQRLLVLS--KGLQEYEEWKWGKNPTMVEVLEEFP 192
Query: 100 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK--RTGLCSVW 157
           S+QMP   L+  +  L+ R +SISSSP  +P++VHLTV++VS+ T         G+CS W
Sbjct: 193 SIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSW 252
Query: 158 LAGLDPQQGIYIPAWFQKGS----LPRPPPSVPLILIGPGTGCAPFRGFVEERA--IQSS 211
           L  +  Q    +P  F +G+    LPR  P VP IL+GPGTG APFR F ++R   IQ  
Sbjct: 253 LNRI--QADDVVPC-FVRGAPSFHLPR-NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHK 308
Query: 212 SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK--QPQKVYV 268
                P++  FGCR    D +YRE  L  + N GVF E      Y A+SR+  +P+K YV
Sbjct: 309 GMNPCPMVLVFGCRQSKIDHIYREETL-QAKNKGVFRE-----LYTAYSREPDRPKK-YV 361
Query: 269 QHKMLEQ-SQRIWNLLLSKAS-IYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLK 326
           Q  + EQ ++ ++  L  +   IYV G  T M +DV    + I++++G+ S + A  ++ 
Sbjct: 362 QDVLQEQLAESVYRALKEQGGHIYVCGDVT-MAADVLKAIQRIMTQQGKLSEEDAGVFIS 420
Query: 327 ALQRAGRYH 335
            L+   RYH
Sbjct: 421 RLRDDNRYH 429

>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539

Iteration: 1
 Score =  144 bits (364), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 158/329 (48%), Gaps = 41/329 (12%)
Query: 45  ASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 104
           A P++ F   +  + +   EK RLQ   S +G  D  ++ +     +L++L  FPS Q P
Sbjct: 219 AIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAXACLLDLLLAFPSCQPP 278
Query: 105 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSW--TTPYKRKRTGLCSVWLA--- 159
           +  L++ +P L+ R +S +SS L HP ++H   ++V +  T   +  R G+C+ WLA   
Sbjct: 279 LSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLV 338
Query: 160 -----------------GLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGF 202
                             L P+  I+ P       LP   PS+P+I++GPGTG APF GF
Sbjct: 339 ASVLQPNIHASHEDSGKALAPKISIF-PRTTNSFHLPD-DPSIPIIMVGPGTGIAPFIGF 396
Query: 203 VEERAI---QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           ++ R     Q   G    +  FFGCR++D D+L+R+  L H L  G+ +  K     V+F
Sbjct: 397 LQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRK-ELRHFLKHGILTHLK-----VSF 450
Query: 259 SRKQP------QKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVS 311
           SR  P         YVQ  +    Q++  +LL +   IYV G A  M  DV     +I+S
Sbjct: 451 SRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIIS 510
Query: 312 KEGEASRDSAANWLKALQRAGRYHVEAWS 340
           KE    +  A   L  L+   RY  + WS
Sbjct: 511 KEVGVEKLEAMKTLATLKEEKRYLQDIWS 539

>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539

Iteration: 1
 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 158/329 (48%), Gaps = 41/329 (12%)
Query: 45  ASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMP 104
           A P++ F   +  + +   EK RLQ   S +G  D  ++ +     +L++L  FPS Q P
Sbjct: 219 AIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDAXACLLDLLLAFPSCQPP 278
Query: 105 IDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSW--TTPYKRKRTGLCSVWLA--- 159
           +  L++ +P L+ R +S +SS L HP ++H   ++V +  T   +  R G+C+ WLA   
Sbjct: 279 LSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLV 338
Query: 160 -----------------GLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGF 202
                             L P+  I+ P       LP   PS+P+I++GPGTG APF GF
Sbjct: 339 ASVLQPNIHASHEDSGKALAPKISIF-PRTTNSFHLPD-DPSIPIIMVGPGTGIAPFIGF 396
Query: 203 VEERAI---QSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           ++ R     Q   G    +  FFGCR++D D+L+R+  L H L  G+ +  K     V+F
Sbjct: 397 LQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRK-ELRHFLKHGILTHLK-----VSF 450
Query: 259 SRKQP------QKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVS 311
           SR  P         YVQ  +    Q++  +LL +   IYV G A  M  DV     +I+S
Sbjct: 451 SRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIIS 510
Query: 312 KEGEASRDSAANWLKALQRAGRYHVEAWS 340
           KE    +  A   L  L+   RY  + WS
Sbjct: 511 KEVGVEKLEAMKTLATLKEEKRYLQDIWS 539

>pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 In Complex With Nadp+ Length = 393

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/265 (35%), Positives = 146/265 (55%), Gaps = 24/265 (9%)
Query: 87  ERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVS---WT 143
           +R T+LE+LE +P+ +M     + L+P ++ R +SISSSP     Q  +TVSVVS   W+
Sbjct: 141 KRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWS 200
Query: 144 TPYKRKRTGLCSVWLAGLDPQQGIYIPAWF----QKGSLPRPPPSVPLILIGPGTGCAPF 199
              + K  G+ S +LA L  Q+G  I  +      + +LP+ P + PLI++GPGTG APF
Sbjct: 201 GYGEYK--GIASNYLAEL--QEGDTITCFISTPQSEFTLPKDPET-PLIMVGPGTGVAPF 255
Query: 200 RGFVEERAIQSSSGPA-APIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257
           RGFV+ R      G +      +FGCR+  +D+LY+E  L ++ ++G+ +       + A
Sbjct: 256 RGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQE-ELENAQSEGIIT------LHTA 308
Query: 258 FSR--KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE 315
           FSR   QP K YVQH M +  +++  LL   A  Y+ G  ++M   V +T  +  +   +
Sbjct: 309 FSRMPNQP-KTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQ 367
Query: 316 ASRDSAANWLKALQRAGRYHVEAWS 340
            S   A  WL+ L+  GRY  + W+
Sbjct: 368 VSEADARLWLQQLEEKGRYAKDVWA 392

>pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 Length = 391

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/265 (35%), Positives = 146/265 (55%), Gaps = 24/265 (9%)
Query: 87  ERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVS---WT 143
           +R T+LE+LE +P+ +M     + L+P ++ R +SISSSP     Q  +TVSVVS   W+
Sbjct: 139 KRLTMLELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWS 198
Query: 144 TPYKRKRTGLCSVWLAGLDPQQGIYIPAWF----QKGSLPRPPPSVPLILIGPGTGCAPF 199
              + K  G+ S +LA L  Q+G  I  +      + +LP+ P + PLI++GPGTG APF
Sbjct: 199 GYGEYK--GIASNYLAEL--QEGDTITCFISTPQSEFTLPKDPET-PLIMVGPGTGVAPF 253
Query: 200 RGFVEERAIQSSSGPA-APIIFFFGCRN-EDDFLYRELWLSHSLNDGVFSEAKGGGFYVA 257
           RGFV+ R      G +      +FGCR+  +D+LY+E  L ++ ++G+ +       + A
Sbjct: 254 RGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQE-ELENAQSEGIIT------LHTA 306
Query: 258 FSR--KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE 315
           FSR   QP K YVQH M +  +++  LL   A  Y+ G  ++M   V +T  +  +   +
Sbjct: 307 FSRMPNQP-KTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQ 365
Query: 316 ASRDSAANWLKALQRAGRYHVEAWS 340
            S   A  WL+ L+  GRY  + W+
Sbjct: 366 VSEADARLWLQQLEEKGRYAKDVWA 390

>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 Length = 374

Iteration: 1
 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 12/244 (4%)
Query: 98  FPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW 157
           F   Q+  + L+ L+ PL  R +SI+SS     N+VH+TV VV +     R R G  S +
Sbjct: 141 FSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSF 199
Query: 158 LAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPA 215
           LA    ++G  +  + +     R P  P  P+I+IGPGTG APFR F+++RA  +   P 
Sbjct: 200 LADRVEEEG-EVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRA--ADEAPG 256
Query: 216 APIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQ 275
              +FF      +DFLY+  W  + + +GV +        +A+SR Q +KVYVQ K+ EQ
Sbjct: 257 KNWLFFGNPHFTEDFLYQVEWQRY-VKEGVLTRID-----LAWSRDQKEKVYVQDKLREQ 310
Query: 276 SQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
              +W  +   A IYV G A +M  DV     E++++ G    ++A  +L  L+   RY 
Sbjct: 311 GAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQ 370
Query: 336 VEAW 339
            + +
Sbjct: 371 RDVY 374

>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g, Y75f, K78a. Length = 682

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 124/265 (46%), Gaps = 33/265 (12%)
Query: 85  QKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTT 144
           +K+   V  ++E+FP+ ++P        PP+      ++++ L +       V++     
Sbjct: 441 EKQTVHVTSIVENFPNPELPD------APPV----VGVTTNLLRNIQLAQNNVNIAETNL 490
Query: 145 PYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGFV 203
           P      G   ++           +P   ++ +   P  PS P+I+IGPGTG APFRGF+
Sbjct: 491 PVHYDLNGPRKLF-------ANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFI 543
Query: 204 EERAI----QSSSGPAAPI---IFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGFY 255
            ER      Q   G    +   I F+G RN DDFLY++ W  ++   DG F         
Sbjct: 544 RERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFE------MV 597
Query: 256 VAFSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG 314
           VA SR    +KVYVQ K+ +   +++ ++ + A IYV G A  M   V +    I+S+  
Sbjct: 598 VAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGK 657
Query: 315 EASRDSAANWLKALQRAGRYHVEAW 339
             + D A   +K L+ +GRY  + W
Sbjct: 658 SITTDEATELIKMLKTSGRYQEDVW 682

>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450 Reductase Suggests A Novel Mechanism Of Electron Transfer By Diflavin Reductases. Length = 682

Iteration: 1
 Score =  108 bits (270), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 124/265 (46%), Gaps = 33/265 (12%)
Query: 85  QKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTT 144
           +K+   V  ++E+FP+ ++P        PP+      ++++ L +       V++     
Sbjct: 441 EKQTVHVTSIVENFPNPELPD------APPV----VGVTTNLLRNIQLAQNNVNIAETNL 490
Query: 145 PYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP-PSVPLILIGPGTGCAPFRGFV 203
           P      G   ++           +P   ++ +   P  PS P+I+IGPGTG APFRGF+
Sbjct: 491 PVHYDLNGPRKLF-------ANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFI 543
Query: 204 EERAI----QSSSGPAAPI---IFFFGCRNEDDFLYRELWLSHSLN-DGVFSEAKGGGFY 255
            ER      Q   G    +   I F+G RN DDFLY++ W  ++   DG F         
Sbjct: 544 RERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFE------MV 597
Query: 256 VAFSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG 314
           VA SR    +KVYVQ K+ +   +++ ++ + A IYV G A  M   V +    I+S+  
Sbjct: 598 VAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAKGVSTALVGILSRGK 657
Query: 315 EASRDSAANWLKALQRAGRYHVEAW 339
             + D A   +K L+ +GRY  + W
Sbjct: 658 SITTDEATELIKMLKTSGRYQEDVW 682

>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 89  PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEVVKGVCSNFLCDLKPGAEVKIT 148
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++  GTG APFR F+     EE      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEEHEDYKYTGLA---WLFLGVP 205
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF--SRKQP----QKVYVQHKMLEQSQRI 279
             D  LY+E             E     F + F  SR+Q     +K+Y+Q +M E  + +
Sbjct: 206 TSDTLLYKEELEK-------MKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYKEEL 258
Query: 280 WNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYH 335
           W  LL K + YV     K M   +     ++ +K+G        NWL   K L+++ +++
Sbjct: 259 WE-LLKKDNTYVYMCGLKGMEKGIDDIMLDLAAKDG-------INWLDYKKQLKKSEQWN 310
Query: 336 VEAW 339
           VE +
Sbjct: 311 VEVY 314

>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 102/244 (41%), Gaps = 36/244 (14%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 85  PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKIT 144
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRG-----FVEERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++  GTG APFR      F+EE      SG A     F G  
Sbjct: 145 GPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLA---WLFLGVP 201
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF--SRKQP----QKVYVQHKMLEQSQRI 279
             D  LY+E             E     F + F  SR+Q     +K+Y+Q +M E  + +
Sbjct: 202 TSDSLLYKEELEK-------MKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYREEL 254
Query: 280 WNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYH 335
           W  LL K + YV     K M   +      + +K+G        +W+   K L++  +++
Sbjct: 255 WE-LLKKDNTYVYMCGLKGMEKGIDDIMLNLAAKDG-------IDWMQYKKQLKKGEQWN 306
Query: 336 VEAW 339
           VE +
Sbjct: 307 VEVY 310

>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms Length = 316

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 150 RTGLCSVWLAGLDPQQGIYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAI 208
           + G+CS +L    P   I +     K  L P   P+   I+I  GTG APFRG++    +
Sbjct: 130 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFM 189
Query: 209 QSSSGP--AAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-- 264
           +             F G  N D  LY E + S+     +        +  A SR+Q    
Sbjct: 190 EDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY-----LKQYPDNFRYDKALSREQKNRS 244
Query: 265 --KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 322
             K+YVQ K+ E S  I+ LL   A IY  G    MP  +  T +++  + GE    S  
Sbjct: 245 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPG-IQDTLKKVAERRGE----SWD 299
Query: 323 NWLKALQRAGRYHVEAW 339
             L  L++  ++HVE +
Sbjct: 300 QKLAQLKKNKQWHVEVY 316

>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms - Test Set Withheld Length = 311

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 150 RTGLCSVWLAGLDPQQGIYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAI 208
           + G+CS +L    P   I +     K  L P   P+   I+I  GTG APFRG++    +
Sbjct: 125 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFM 184
Query: 209 QSSSGP--AAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-- 264
           +             F G  N D  LY E + S+     +        +  A SR+Q    
Sbjct: 185 EDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY-----LKQYPDNFRYDKALSREQKNRS 239
Query: 265 --KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 322
             K+YVQ K+ E S  I+ LL   A IY  G    MP  +  T +++  + GE    S  
Sbjct: 240 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPG-IQDTLKKVAERRGE----SWD 294
Query: 323 NWLKALQRAGRYHVEAW 339
             L  L++  ++HVE +
Sbjct: 295 QKLAQLKKNKQWHVEVY 311

>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+ Reductase From Maize Root At 1.05 Angstroms Length = 311

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 17/195 (8%)
Query: 150 RTGLCSVWLAGLDPQQGIYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAI 208
           + G+CS +L    P   I +     K  L P   P+   I+I  GTG APFRG++    +
Sbjct: 125 KNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFM 184
Query: 209 QSSSGP--AAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-- 264
           +             F G  N D  LY E + S+     +        +  A SR+Q    
Sbjct: 185 EDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY-----LKQYPDNFRYDKALSREQKNRS 239
Query: 265 --KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 322
             K+YVQ K+ E S  I+ LL   A IY  G    MP  +  T +++  + GE    S  
Sbjct: 240 GGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMPG-IQDTLKKVAERRGE----SWD 294
Query: 323 NWLKALQRAGRYHVE 337
             L  L++  ++HVE
Sbjct: 295 QKLAQLKKNKQWHVE 309

>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 105/255 (41%), Gaps = 30/255 (11%)
Query: 100 SVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSV 156
           S+ +  D + +   P K R +SI+SS +        V L V  + +T        G+CS 
Sbjct: 75  SIGVIADGVDKNGKPHKVRLYSIASSAIGDFGDSKTVSLCVKRLIYTNDAGEIVKGVCSN 134
Query: 157 WLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAA 216
           +L  L P   + I     K  L    P+  +I++  GTG APFR F+ +   +       
Sbjct: 135 FLCDLQPGDNVQITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKF 194
Query: 217 PII--FFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV--AFSRKQP----QKVYV 268
             +   F G       LY+E +       G   E     F V  A SR+Q     +++Y+
Sbjct: 195 NGLGWLFLGVPTSSSLLYKEEF-------GKMKERAPENFRVDYAVSREQTNAAGERMYI 247
Query: 269 QHKMLEQSQRIWNLLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL-- 325
           Q +M E  + +W  LL K + YV     K M   +      +  K+G        +W   
Sbjct: 248 QTRMAEYKEELWE-LLKKDNTYVYMCGLKGMEKGIDDIMVSLAEKDG-------IDWFDY 299
Query: 326 -KALQRAGRYHVEAW 339
            K L+R  +++VE +
Sbjct: 300 KKQLKRGDQWNVEVY 314

>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 24/238 (10%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS L        V L V  + +T     +  G+CS +L  L P   + I 
Sbjct: 71  PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDKGEEVKGVCSNFLCDLKPGADVKIT 130
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 131 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 187
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 281
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 188 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWT 242
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
           LL    +         M   +      + +KEG       A++ K L++A +++VE +
Sbjct: 243 LLKKDNTFVYMCGLKGMEQGIDDIMSSLAAKEGI----DWADYKKQLKKAEQWNVEVY 296

>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Length = 304

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 276
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE W
Sbjct: 301 VETW 304

>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 281
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 338
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307
Query: 339 W 339
           W
Sbjct: 308 W 308

>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By Asp And Leu 78 Mutated By Asp Length = 295

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKDRDYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 236
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 336 VEAW 339
           VE +
Sbjct: 292 VETY 295

>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By Leu (V136l) Length = 295

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPLGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 222 -FGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ--PQ--KVYVQHKMLEQS 276
            FG     + LY+E      L +             A SR+Q  PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKE-----ELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHA 236
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 336 VEAW 339
           VE +
Sbjct: 292 VETY 295

>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 2.25 Angstroms Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNEKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE +
Sbjct: 301 VETY 304

>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72 Replaced By Glu (k72e) Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE +
Sbjct: 301 VETY 304

>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139 Replaced By Lys (E139k) Length = 303

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKKMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 244
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 336 VEAW 339
           VE +
Sbjct: 300 VETY 303

>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By Cocrystallization Length = 304

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE +
Sbjct: 301 VETY 304

>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By Glu (r264e) Length = 295

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 236
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LEGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 336 VEAW 339
           VE +
Sbjct: 292 VETY 295

>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 244
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 336 VEAW 339
           VE +
Sbjct: 300 VETY 303

>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By Pro (L263p) Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 244
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICGPRG-MEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 336 VEAW 339
           VE +
Sbjct: 300 VETY 303

>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By Asp (L78d) Length = 295

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKLRDYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 236
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 336 VEAW 339
           VE +
Sbjct: 292 VETY 295

>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase Complex Length = 303

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 244
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
             +W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DELWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 336 VEAW 339
           VE +
Sbjct: 300 VETY 303

>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly (T155g) Length = 295

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLAGGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 236
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 336 VEAW 339
           VE +
Sbjct: 292 VETY 295

>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Length = 304

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 31/243 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEA 338
           VE 
Sbjct: 301 VET 303

>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Arg (K75r) Length = 304

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P + R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PERLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE +
Sbjct: 301 VETY 304

>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By Phe (Y303f) Length = 303

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 244
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
             +W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DELWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 336 VEAW 339
           VE +
Sbjct: 300 VETF 303

>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed With Nadp Length = 303

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 31/243 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGATVYGVCSTYLTHIEPGSEV 130
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 244
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 336 VEA 338
           VE 
Sbjct: 300 VET 302

>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Gln (K75q) Length = 304

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P + R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEQLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE +
Sbjct: 301 VETY 304

>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Glu (K75e) Length = 295

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P + R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 65  PEELRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 122
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 123 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 181
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 236
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 237 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 291
Query: 336 VEAW 339
           VE +
Sbjct: 292 VETY 295

>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 281
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 338
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMCGVKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307
Query: 339 W 339
           +
Sbjct: 308 Y 308

>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Ser (K75s) Length = 304

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P   R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PESLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE +
Sbjct: 301 VETY 304

>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly And Ala 160 Replaced By Thr (T155g-A160t) Length = 303

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 73  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 130
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG  P R ++  R  + +   A P   F      
Sbjct: 131 KITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYL-WRMFKDAERAANPEYQFKGFSWL 189
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 190 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 244
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 245 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 299
Query: 336 VEAW 339
           VE +
Sbjct: 300 VETY 303

>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG  P R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICGPRG-MEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE +
Sbjct: 301 VETY 304

>pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 281
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 338
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307
Query: 339 W 339
           +
Sbjct: 308 Y 308

>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG  P R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICGPPP-MEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           VE +
Sbjct: 301 VETY 304

>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 70  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 129
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 130 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 186
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 281
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 187 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 241
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 338
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 242 LLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 294
Query: 339 W 339
           +
Sbjct: 295 Y 295

>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Length = 304

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 31/244 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG AP R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
            ++W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DQLWQLIKNQKTHTYICG-LRGMEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEAW 339
           V  +
Sbjct: 301 VATY 304

>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 30/241 (12%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 281
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 338
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMMGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307
Query: 339 W 339
           +
Sbjct: 308 Y 308

>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 98/240 (40%), Gaps = 30/240 (12%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS +        V L V  + +T        G+CS +L  L P   + I 
Sbjct: 83  PHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDLKPGSEVKIT 142
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 143 GPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW---LFLGVP 199
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWN 281
                LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W 
Sbjct: 200 TSSSLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWE 254
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 338
           LL    +         M   +      + +K+G        +W+   + L++A +++VE 
Sbjct: 255 LLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEV 307

>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 31/243 (12%)
Query: 114 PLKTRAFSISSSPLAHPNQVH-LTVSVVSWTTPYKRKRTG-----LCSVWLAGLDPQQGI 167
           P K R +SI+S+   H + V   T+S+      YK   +G     +CS +L  ++P   +
Sbjct: 74  PEKLRLYSIAST--RHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEV 131
Query: 168 YIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF------ 221
            I     K  L    P   +I++  GTG  P R ++  R  + +   A P   F      
Sbjct: 132 KITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYL-WRMFKDAERAANPEYQFKGFSWL 190
Query: 222 -FGCRNEDDFLYRELW--LSHSLNDGVFSEAKGGGFYVAFSRKQPQ--KVYVQHKMLEQS 276
            FG     + LY+E    +     D          + ++  +K PQ  ++Y+Q ++ E +
Sbjct: 191 VFGVPTTPNILYKEELEEIQQKYPDNFRLT-----YAISREQKNPQGGRMYIQDRVAEHA 245
Query: 277 QRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH 335
             +W L+ + K   Y+ G    M   + +      +KEG    D    + K L++AGR+H
Sbjct: 246 DELWQLIKNQKTHTYICGPRG-MEEGIDAALSAAAAKEGVTWSD----YQKDLKKAGRWH 300
Query: 336 VEA 338
           VE 
Sbjct: 301 VET 303

>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp Reductase (Fnr) From Pisum Sativum Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 33/238 (13%)
Query: 114 PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWF 173
           P K R +SI+SS +        TVS+       KR   G+CS +L  L P   + I    
Sbjct: 98  PHKLRLYSIASSAIGDFGDSK-TVSLC-----VKRVPDGVCSNFLCDLKPGSEVKITGPV 151
Query: 174 QKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCRNED 228
            K  L    P+  +I++G GTG APFR F+     E+      +G A     F G     
Sbjct: 152 GKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLA---WLFLGVPTSS 208
Query: 229 DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ----PQKVYVQHKMLEQSQRIWNLLL 284
             LY+E +             +      A SR+Q     +K+Y+Q +M + ++ +W LL 
Sbjct: 209 SLLYKEEFEKMKE-----KAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELWELLK 263
Query: 285 SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEAW 339
              +         M   +      + +K+G        +W+   + L++A +++VE +
Sbjct: 264 KDNTFVYMCGLKGMEKGIDDIMVSLAAKDG-------IDWIEYKRTLKKAEQWNVEVY 314

>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 32/242 (13%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 281
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 282 LLLSKASIYVAGSATK-MPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVE 337
            +L K + YV     K M   +      + + EG        +W+   + L++A +++VE
Sbjct: 261 -MLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEG-------IDWIEYKRQLKKAEQWNVE 312
Query: 338 AW 339
            +
Sbjct: 313 VY 314

>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312q Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 30/241 (12%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 281
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 338
           +L    + +       M   +      + + EG        +W+   + L++A +++V+ 
Sbjct: 261 MLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEG-------IDWIEYKRQLKKAEQWNVQV 313
Query: 339 W 339
           +
Sbjct: 314 Y 314

>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of Ferredoxin-Nadp+ Reductase: Structure-Function Relationship As Studied By Site-Directed Mutagenesis And X- Ray Crystallography Length = 314

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 96/241 (39%), Gaps = 30/241 (12%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R + I+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYVIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 281
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL---KALQRAGRYHVEA 338
           +L    + +       M   +      + + EG        +W+   + L++A +++VE 
Sbjct: 261 MLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEG-------IDWIEYKRQLKKAEQWNVEV 313
Query: 339 W 339
           +
Sbjct: 314 Y 314

>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312l Length = 314

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 20/213 (9%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 281
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG 314
           +L    + +       M   +      + + EG
Sbjct: 261 MLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEG 293

>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312a Length = 314

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 20/213 (9%)
Query: 114 PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIP 170
           P K R +SI+SS L        V L V  + +T        G+CS +L  L P   + + 
Sbjct: 89  PHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLT 148
Query: 171 AWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFGCR 225
               K  L    P+  +I++G GTG APFR F+     E+      +G A     F G  
Sbjct: 149 GPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLA---WLFLGVP 205
Query: 226 NEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWN 281
                LY+E +                    A SR+Q     +K+Y+Q +M + +  +W 
Sbjct: 206 TSSSLLYKEEFEKMKE-----KAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWE 260
Query: 282 LLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG 314
           +L    + +       M   +      + + EG
Sbjct: 261 MLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEG 293

>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 12/169 (7%)
Query: 152 GLCSVWLAGLDPQQGIYIPA-WFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQS 210
           G+CS ++  L P   + +     +K  LP    S  ++ +  GTG APF G  EE     
Sbjct: 132 GVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHK 191
Query: 211 SSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-----K 265
                  I   +G    D+ +  +         G+ S+ K      A SR++       +
Sbjct: 192 LIKFTGNITLVYGAPYSDELVMMDYL------KGLESKHKNFKLITAISREEKNSFDGGR 245
Query: 266 VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEG 314
           +Y+ H++ EQ++ +  +L      Y+ G    M   V    ++I    G
Sbjct: 246 MYISHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTG 294

>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 36/245 (14%)
Query: 114 PLKTRAFSISSS---PLAHPNQVHLTVSVVSWTTPYKRKRT-GLCSVWLAGLD-PQQGIY 168
           P K R +SI+S+    +     V L V  + +  P   +   G+CS +L  L      + 
Sbjct: 175 PHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVK 234
Query: 169 IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFV-----EERAIQSSSGPAAPIIFFFG 223
           I     K  L        ++++  GTG APFR F+     E+       G A  I   FG
Sbjct: 235 ITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLI---FG 291
Query: 224 CRNEDDFLYRELWLSHSL-NDGVFSEAKGGGFYVAFSRKQPQ----KVYVQHKMLEQSQR 278
                + LY++ +   +  N   F          A SR+Q      KVYVQ ++ E +  
Sbjct: 292 VPYTANILYKDDFEKMAAENPDNFR------LTYAISREQKTADGGKVYVQSRVSEYADE 345
Query: 279 IWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANW---LKALQRAGRY 334
           ++ ++      +Y+ G     P  +  TF     K G        NW    +++++  R+
Sbjct: 346 LFEMIQKPNTHVYMCGLKGMQPP-IDETFTAEAEKRG-------LNWEEMRRSMKKEHRW 397
Query: 335 HVEAW 339
           HVE +
Sbjct: 398 HVEVY 402

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	1e-135
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	1e-131
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	1e-127
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	1e-121
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	1e-120
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	1e-118
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	1e-118
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	1e-112
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	4e-82
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	3e-79
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	5e-78
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	2e-77
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	6e-70
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	2e-68
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	4e-11
1tvc_A	250	Methane monooxygenase component C, methane monooxy	3e-10
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	3e-10
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	9e-09
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	2e-08
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	3e-08
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	1e-07
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	6e-07
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	3e-06
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	6e-06
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	1e-05
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	5e-05
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	7e-04

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Length = 618

 Score =  396 bits (1020), Expect = e-135
 Identities = 114/322 (35%), Positives = 172/322 (53%), Gaps = 18/322 (5%)

Query: 29  PIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQK 86
           P   RT +   +D+T   PR      ++ +A+   E+E L+  AS   EG++    +  +
Sbjct: 305 PTSYRTALTYYLDIT-NPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVE 363

Query: 87  ERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY 146
            RR +L +L+D PS++ PID L +L+P L+ R +SI+SS   HPN VH+   VV + T  
Sbjct: 364 ARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKA 423

Query: 147 KRKRTGLCSVWLAGLDP----QQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFR 200
            R   G+ + WL   +P         +P + +K    R P   + P+I++GPGTG APF 
Sbjct: 424 GRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQF-RLPFKATTPVIMVGPGTGVAPFI 482

Query: 201 GFVEERAIQSSSGPA-APIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAF 258
           GF++ERA     G      + ++GCR  D D+LYRE        DG  ++       VAF
Sbjct: 483 GFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQF-HRDGALTQ-----LNVAF 536

Query: 259 SRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASR 318
           SR+Q  KVYVQH + +  + +W L+   A IYV G A  M  DV +TF +IV++ G    
Sbjct: 537 SREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEH 596

Query: 319 DSAANWLKALQRAGRYHVEAWS 340
             A +++K L   GRY ++ WS
Sbjct: 597 AQAVDYIKKLMTKGRYSLDVWS 618

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* Length = 458

 Score =  382 bits (983), Expect = e-131
 Identities = 115/328 (35%), Positives = 175/328 (53%), Gaps = 18/328 (5%)

Query: 23  KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDL 80
           K+    P   RT +   +D+T+  PR      ++ +A+   E+E L+  AS   EG++  
Sbjct: 139 KHPFPCPTSYRTALTYYLDITNP-PRTNVLYELAQYASEPSEQELLRKMASSSGEGKELY 197

Query: 81  YKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVV 140
             +  + RR +L +L+D PS++ PID L +L+P L+ R +SI+SS   HPN VH+   VV
Sbjct: 198 LSWVVEARRHILAILQDCPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVV 257

Query: 141 SWTTPYKRKRTGLCSVWLAGLDP----QQGIYIPAWFQKGSLPRPP--PSVPLILIGPGT 194
            + T   R   G+ + WL   +P         +P + +K    R P   + P+I++GPGT
Sbjct: 258 EYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKSQF-RLPFKATTPVIMVGPGT 316

Query: 195 GCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG 252
           G APF GF++ERA     G      + ++GCR  D D+LYRE        DG  ++    
Sbjct: 317 GVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQF-HRDGALTQ---- 371

Query: 253 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSK 312
              VAFSR+Q  KVYVQH + +  + +W L+   A IYV G A  M  DV +TF +IV++
Sbjct: 372 -LNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAE 430

Query: 313 EGEASRDSAANWLKALQRAGRYHVEAWS 340
            G      A +++K L   GRY ++ WS
Sbjct: 431 LGAMEHAQAVDYIKKLMTKGRYSLDVWS 458

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* Length = 539

 Score =  372 bits (958), Expect = e-127
 Identities = 99/368 (26%), Positives = 161/368 (43%), Gaps = 38/368 (10%)

Query: 4   HAVSQVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEH 63
                ++ K                   L+      +++  A P++ F   +  + +   
Sbjct: 179 EHCVLLKIKADTKKKGATLPQHIPAGCSLQFIFTWCLEIR-AIPKKAFLRALVDYTSDSA 237

Query: 64  EKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSIS 123
           EK RLQ   S +G  D  ++ +     +L++L  FPS Q P+  L++ +P L+ R +S +
Sbjct: 238 EKRRLQELCSKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHLPKLQPRPYSCA 297

Query: 124 SSPLAHPNQVHLTVSVVSWTTP--YKRKRTGLCSVWLAGLDPQQ---------------- 165
           SS L HP ++H   ++V + +    +  R G+C+ WLA L                    
Sbjct: 298 SSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKAL 357

Query: 166 GIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERA---IQSSSGPAAPIIF 220
              I  + +  +    P  PS+P+I++GPGTG APF GF++ R     Q   G    +  
Sbjct: 358 APKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWL 417

Query: 221 FFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQHKML 273
           FFGCR++D D+L+R+      L  G+ +        V+FSR  P         YVQ  + 
Sbjct: 418 FFGCRHKDRDYLFRKELRHF-LKHGILTH-----LKVSFSRDAPVGEEEAPAKYVQDNIQ 471

Query: 274 EQSQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG 332
              Q++  +LL +   IYV G A  M  DV     +I+SKE    +  A   L  L+   
Sbjct: 472 LHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEK 531

Query: 333 RYHVEAWS 340
           RY  + WS
Sbjct: 532 RYLQDIWS 539

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435

 Score =  355 bits (914), Expect = e-121
 Identities = 107/331 (32%), Positives = 169/331 (51%), Gaps = 22/331 (6%)

Query: 19  PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRD 78
            +    +   P  +    +  +D+T+  P     +  +  AT E EK+RL      +G  
Sbjct: 115 SNWKDESRLPPCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLL--VLSKGLQ 171

Query: 79  DLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVS 138
           +  ++   +  T++EVLE+FPS+QMP   L+  +  L+ R +SISSSP  +P++VHLTV+
Sbjct: 172 EYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVA 231

Query: 139 VVSWTTPYK--RKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGT 194
           +VS+ T         G+CS WL  +       +P + +       P  P VP IL+GPGT
Sbjct: 232 IVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVPCFVRGAPSFHLPRNPQVPCILVGPGT 289

Query: 195 GCAPFRGFVEERA--IQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKG 251
           G APFR F ++R   IQ       P++  FGCR    D +YRE  L    N GVF E   
Sbjct: 290 GIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQA-KNKGVFRE--- 345

Query: 252 GGFYVAFSRKQPQ-KVYVQHKMLEQ-SQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEE 308
              Y A+SR+  + K YVQ  + EQ ++ ++  L  +   IYV G    M +DV    + 
Sbjct: 346 --LYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQR 402

Query: 309 IVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
           I++++G+ S + A  ++  L+   RYH + +
Sbjct: 403 IMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 433

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* Length = 393

 Score =  350 bits (899), Expect = e-120
 Identities = 93/315 (29%), Positives = 143/315 (45%), Gaps = 22/315 (6%)

Query: 32  LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTV 91
           L  +VEL          R     M+        K  L+     +   +       +R T+
Sbjct: 94  LLQYVELQ-----DPVTRTQLRAMAAKTVCPPHKVELEALLEKQAYKE---QVLAKRLTM 145

Query: 92  LEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY-KRKR 150
           LE+LE +P+ +M     + L+P ++ R +SISSSP     Q  +TVSVVS        + 
Sbjct: 146 LELLEKYPACEMKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEY 205

Query: 151 TGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAI 208
            G+ S +LA L     I       +      P  P  PLI++GPGTG APFRGFV+ R  
Sbjct: 206 KGIASNYLAELQEGDTITCFISTPQSEF-TLPKDPETPLIMVGPGTGVAPFRGFVQARKQ 264

Query: 209 QSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK-QPQK 265
               G        +FGCR+   D+LY+E    ++ ++G+ +       + AFSR     K
Sbjct: 265 LKEQGQSLGEAHLYFGCRSPHEDYLYQEEL-ENAQSEGIIT------LHTAFSRMPNQPK 317

Query: 266 VYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWL 325
            YVQH M +  +++  LL   A  Y+ G  ++M   V +T  +  +   + S   A  WL
Sbjct: 318 TYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWL 377

Query: 326 KALQRAGRYHVEAWS 340
           + L+  GRY  + W+
Sbjct: 378 QQLEEKGRYAKDVWA 392

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682

 Score =  355 bits (913), Expect = e-118
 Identities = 93/349 (26%), Positives = 148/349 (42%), Gaps = 54/349 (15%)

Query: 32  LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTV 91
           ++ ++E+T         R  F  +  FA     KE+L   +    +D        +   +
Sbjct: 347 IKHYLEIT-----GPVSRQLFSSLIQFAPNADVKEKLTLLSK--DKDQFAVEITSKYFNI 399

Query: 92  LEVLEDF----PSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTP-- 145
            + L+          +P+ +LV+ VP +  R +SISSS L+    VH+T  V ++  P  
Sbjct: 400 ADALKYLSDGAKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPEL 459

Query: 146 -YKRKRTGLCSVWLAGLDPQQ------------------------GIYIPAWFQKGSLPR 180
                  G+ +  L  +   Q                           +P   ++ +  R
Sbjct: 460 PDAPPVVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNF-R 518

Query: 181 PP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSG-------PAAPIIFFFGCRNEDDFL 231
            P  PS P+I+IGPGTG APFRGF+ ER     S             I F+G RN DDFL
Sbjct: 519 LPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFL 578

Query: 232 YRELWLSHSLNDGVFSEAKGGGFYVAFSRK-QPQKVYVQHKMLEQSQRIWNLLLSKASIY 290
           Y++ W  ++       E       VA SR    +KVYVQ K+ +   +++ ++ + A IY
Sbjct: 579 YQDEWPEYAKKLDGSFE-----MVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIY 633

Query: 291 VAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
           V G A  M   V +    I+S+    + D A   +K L+ +GRY  + W
Sbjct: 634 VCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW 682

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688

 Score =  355 bits (912), Expect = e-118
 Identities = 103/319 (32%), Positives = 163/319 (51%), Gaps = 26/319 (8%)

Query: 32  LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTV 91
            + ++++T       P     +  +  AT E EK+RL      +G  +  ++   +  T+
Sbjct: 353 FKYYLDIT-----TPPTPLQLQQFASLATNEKEKQRLL--VLSKGLQEYEEWKWGKNPTM 405

Query: 92  LEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RK 149
           +EVLE+FPS+QMP   L+  +  L+ R +SISSSP  +P++VHLTV++VS+ T       
Sbjct: 406 VEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPV 465

Query: 150 RTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERA 207
             G+CS WL  +       +P + +       P  P VP IL+GPGTG APFR F ++R 
Sbjct: 466 HHGVCSSWLNRIQA--DDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQ 523

Query: 208 IQ--SSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 264
                      P++  FGCR    D +YRE  L    N GVF E      Y A+SR+  +
Sbjct: 524 FDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQA-KNKGVFRE-----LYTAYSREPDR 577

Query: 265 -KVYVQHKMLEQ-SQRIWNLLLSK-ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA 321
            K YVQ  + EQ ++ ++  L  +   IYV G    M +DV    + I++++G+ S + A
Sbjct: 578 PKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDA 636

Query: 322 ANWLKALQRAGRYHVEAWS 340
             ++  L+   RYH + + 
Sbjct: 637 GVFISRLRDDNRYHEDIFG 655

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374

 Score =  330 bits (849), Expect = e-112
 Identities = 91/311 (29%), Positives = 143/311 (45%), Gaps = 29/311 (9%)

Query: 32  LRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTV 91
           L+   ELT             E    +AT    +  L                      +
Sbjct: 90  LQWHFELT------VNTANIVE---NYATLTRSETLLPLVGDKAKLQHY-----AATTPI 135

Query: 92  LEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT 151
           ++++  F   Q+  + L+ L+ PL  R +SI+SS     N+VH+TV VV +     R R 
Sbjct: 136 VDMVR-FSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARA 193

Query: 152 GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQ 209
           G  S +LA    ++G  +  + +     R P  P  P+I+IGPGTG APFR F+++RA  
Sbjct: 194 GGASSFLADRVEEEGE-VRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAD 252

Query: 210 SSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYV 268
            + G       FFG  +   DFLY+  W  + + +GV +        +A+SR Q +KVYV
Sbjct: 253 EAPGKN---WLFFGNPHFTEDFLYQVEWQRY-VKEGVLTR-----IDLAWSRDQKEKVYV 303

Query: 269 QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL 328
           Q K+ EQ   +W  +   A IYV G A +M  DV     E++++ G    ++A  +L  L
Sbjct: 304 QDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSEL 363

Query: 329 QRAGRYHVEAW 339
           +   RY  + +
Sbjct: 364 RVERRYQRDVY 374

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314

 Score =  251 bits (642), Expect = 4e-82
 Identities = 45/251 (17%), Positives = 85/251 (33%), Gaps = 21/251 (8%)

Query: 99  PSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRK-RTGLC 154
           P                  R +SI+S   +     + +   +   +           G+C
Sbjct: 75  PGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVC 134

Query: 155 SVWLAGLDPQQGIYIPAWFQKG-SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSG 213
           S ++  L P   + +     K   LP    S  ++ +  GTG APF G  EE        
Sbjct: 135 SNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIK 194

Query: 214 PAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ-----KVYV 268
               I   +G    D+ +  + +L    +     +        A SR++       ++Y+
Sbjct: 195 FTGNITLVYGAPYSDELVMMD-YLKGLESKHKNFK-----LITAISREEKNSFDGGRMYI 248

Query: 269 QHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKAL 328
            H++ EQ++ +  +L      Y+ G    M   V    ++I    G         +   L
Sbjct: 249 SHRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGTYE-----EFKHHL 303

Query: 329 QRAGRYHVEAW 339
           + A +  VE +
Sbjct: 304 EGAHQLFVETY 314

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304

 Score =  243 bits (622), Expect = 3e-79
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 25/260 (9%)

Query: 95  LEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYK-RKR 150
             +  S+ +    + +   P K R +SI+S+          + L V  + +  P      
Sbjct: 55  YIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETV 114

Query: 151 TGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEER---- 206
            G+CS +L  ++P   + I     K  L    P   +I++  GTG  P R ++       
Sbjct: 115 YGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDA 174

Query: 207 --AIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ 264
             A              FG     + LY+E            +         A SR+Q  
Sbjct: 175 ERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEI-QQKYPDN----FRLTYAISREQKN 229

Query: 265 ----KVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRD 319
               ++Y+Q ++ E + ++W L+ + K   Y+ G    M   + +      +KEG     
Sbjct: 230 PQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAAAKEGVT--- 285

Query: 320 SAANWLKALQRAGRYHVEAW 339
             +++ K L++AGR+HVE +
Sbjct: 286 -WSDYQKDLKKAGRWHVETY 304

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311

 Score =  240 bits (614), Expect = 5e-78
 Identities = 66/273 (24%), Positives = 102/273 (37%), Gaps = 31/273 (11%)

Query: 88  RRTVLEVLEDFP-------SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVV 140
              V++   + P        V  P +   +   P   R +SI+S+              V
Sbjct: 49  CHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCV 108

Query: 141 SWTTPYK-------RKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRPPPSVPLILIGP 192
                Y          + G+CS +L    P   I +     K   LP   P+   I+I  
Sbjct: 109 RRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIAT 168

Query: 193 GTGCAPFRGFVEERAIQSSSGPAA--PIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAK 250
           GTG APFRG++    ++             F G  N D  LY E + S+           
Sbjct: 169 GTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFR-- 226

Query: 251 GGGFYVAFSRKQPQ----KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF 306
              +  A SR+Q      K+YVQ K+ E S  I+ LL   A IY  G    M   +  T 
Sbjct: 227 ---YDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMPGIQDTL 282

Query: 307 EEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
           +++  + GE+        L  L++  ++HVE +
Sbjct: 283 KKVAERRGES----WDQKLAQLKKNKQWHVEVY 311

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314

 Score =  239 bits (611), Expect = 2e-77
 Identities = 58/257 (22%), Positives = 101/257 (39%), Gaps = 24/257 (9%)

Query: 95  LEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRT 151
             +  SV +  D   +   P K R +SI+SS L        V L V  + +T        
Sbjct: 70  YREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIK 129

Query: 152 GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQ 209
           G+CS +L  L P   + +      G     P  P+  +I++G GTG APFR F+ +   +
Sbjct: 130 GVCSNFLCDLKPGAEVKL--TGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFE 187

Query: 210 SSSGPAA--PIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP---- 263
                        F G       LY+E +          +         A SR+Q     
Sbjct: 188 KHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKM-KEKAPDNFR----LDFAVSREQTNEKG 242

Query: 264 QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 322
           +K+Y+Q +M + +  +W +L      +Y+ G    M   +      + + EG        
Sbjct: 243 EKMYIQTRMAQYAVELWEMLKKDNTYVYMCG-LKGMEKGIDDIMVSLAAAEGID----WI 297

Query: 323 NWLKALQRAGRYHVEAW 339
            + + L++A +++VE +
Sbjct: 298 EYKRQLKKAEQWNVEVY 314

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316

 Score =  220 bits (561), Expect = 6e-70
 Identities = 52/289 (17%), Positives = 88/289 (30%), Gaps = 42/289 (14%)

Query: 69  QYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLA 128
                    ++L      +      ++            L  +      R +SISSS   
Sbjct: 52  HTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNM 111

Query: 129 HPNQVHLTVSVVSWTTP-YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS--LPRPP--P 183
               V + +     T         G CS ++  L       I      G   LP      
Sbjct: 112 ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKI--NDDIYLTGAHGYFNLPNDAIQK 169

Query: 184 SVPLILIGPGTGCAPFRGFVEERA-------IQSSSGPAAPIIFFFGCRNEDDFLYRELW 236
           +   I I  GTG +P+  F+++            +S     I  ++G  NED  LY    
Sbjct: 170 NTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNEL 229

Query: 237 LSHSLNDGVFSEAKGGGF--YVAFSRKQ---PQKVYVQHKMLEQSQRIWNLLL-SKASIY 290
                    F +        +  FS KQ       YVQ ++ ++     NL    K  +Y
Sbjct: 230 EY-------FQKMYPNNINIHYVFSYKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELY 282

Query: 291 VAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
           + G  + +   V     +I+    +             ++  R HVE +
Sbjct: 283 ICGKKS-IRYKV----MDILKSHDQFD----------EKKKKRVHVEVY 316

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402

 Score =  218 bits (557), Expect = 2e-68
 Identities = 51/257 (19%), Positives = 94/257 (36%), Gaps = 24/257 (9%)

Query: 96  EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYK-RKRT 151
            +  S+ +      +   P K R +SI+S+          V L V  + +  P       
Sbjct: 157 LEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVY 216

Query: 152 GLCSVWLAGLDPQQGIYIPAWFQKGSLPRPP--PSVPLILIGPGTGCAPFRGFVEERAIQ 209
           G+CS +L  L       +      G     P      ++++  GTG APFR F+     +
Sbjct: 217 GVCSTYLCNLPVGTDD-VKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKE 275

Query: 210 --SSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ--- 264
                         FG     + LY++ +      +   +         A SR+Q     
Sbjct: 276 QHEDYKFKGKAWLIFGVPYTANILYKDDFEKM-AAENPDNFR----LTYAISREQKTADG 330

Query: 265 -KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA 322
            KVYVQ ++ E +  ++ ++      +Y+ G    M   +  TF     K G     +  
Sbjct: 331 GKVYVQSRVSEYADELFEMIQKPNTHVYMCG-LKGMQPPIDETFTAEAEKRGL----NWE 385

Query: 323 NWLKALQRAGRYHVEAW 339
              +++++  R+HVE +
Sbjct: 386 EMRRSMKKEHRWHVEVY 402

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 34/185 (18%), Positives = 58/185 (31%), Gaps = 35/185 (18%)

Query: 116 KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYI--PAW 172
           +TR++S SS P          V         +    G  S +L+        +    P  
Sbjct: 154 ETRSYSFSSQP--GNRLTGFVV---------RNVPQGKMSEYLSVQAKAGDKMSFTGPF- 201

Query: 173 FQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLY 232
              GS        P++++  GTG APF   ++        G   P+   FG   + D + 
Sbjct: 202 ---GSFYLRDVKRPVLMLAGGTGIAPFLSMLQVLE---QKGSEHPVRLVFGVTQDCDLVA 255

Query: 233 RELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ---KVYVQHKMLEQSQRIWNLLLSKASI 289
            E   +       F       +    +  + Q   K YV   +         L   +  +
Sbjct: 256 LEQLDALQQKLPWFE------YRTVVAHAESQHERKGYVTGHIEYD-----WLNGGEVDV 304

Query: 290 YVAGS 294
           Y+ G 
Sbjct: 305 YLCGP 309

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 27/126 (21%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK 175
           +R++S ++ P     ++   +         +    G  S +L       Q + +      
Sbjct: 60  SRSYSPANLP-NPEGRLEFLI---------RVLPEGRFSDYLRNDARVGQVLSV------ 103

Query: 176 GSLP------RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDD 229
              P      +     P   +  GTG AP    V +               +FG   E +
Sbjct: 104 -KGPLGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQ---EWTAPNETRIYFGVNTEPE 159

Query: 230 FLYREL 235
             Y + 
Sbjct: 160 LFYIDE 165

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 28/136 (20%)

Query: 109 VQL-VPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWL-AGLDPQQG 166
           + + +     R FS++S+P      + L +               L +  +   +     
Sbjct: 36  LMVVMDERDKRPFSMASTP-DEKGFIELHI---------GASEINLYAKAVMDRILKDHQ 85

Query: 167 IYIPAWFQKGSLP------RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIF 220
           I +        +P      R     P+ILI  GTG +  R  +       +  P   I  
Sbjct: 86  IVV-------DIPHGEAWLRDDEERPMILIAGGTGFSYARSILLT---ALARNPNRDITI 135

Query: 221 FFGCRNEDDFLYRELW 236
           ++G R E         
Sbjct: 136 YWGGREEQHLYDLCEL 151

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272

 Score = 54.8 bits (132), Expect = 9e-09
 Identities = 25/142 (17%), Positives = 39/142 (27%), Gaps = 21/142 (14%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI----PAW 172
            RA+SI+S          L            +   G  +  L  +   + I +       
Sbjct: 63  MRAYSIASPA----WDEELEFYS-------IKVPDGPLTSRLQHIKVGEQIILRPKPVGT 111

Query: 173 FQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLY 232
                +    P   L  +  GTG APF   + E            +I    CR   +  Y
Sbjct: 112 L---VIDALLPGKRLWFLATGTGIAPFASLMREPEAY---EKFDEVIMMHACRTVAELEY 165

Query: 233 RELWLSHSLNDGVFSEAKGGGF 254
               +     D +  E   G  
Sbjct: 166 GRQLVEALQEDPLIGELVEGKL 187

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 108 LVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVS------WTTPYKRKRTGLCSVWLAGL 161
           L         RA+S+++ P A  N + L V + +              + G+ S ++  L
Sbjct: 77  LTCKNEEETVRAYSMANYP-AEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSL 135

Query: 162 DPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFF 221
            P   + +   +  G          ++ IG G G AP R  +              + ++
Sbjct: 136 KPGDKVMMSGPY--GDFHIQDTDAEMLYIGGGAGMAPLRAQILHLFRTL--KTGRKVSYW 191

Query: 222 FGCRNEDDFLYREL 235
           +G R++++  Y E 
Sbjct: 192 YGARSKNEIFYEED 205

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 25/151 (16%), Positives = 42/151 (27%), Gaps = 18/151 (11%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI--PAWFQ 174
            RA+SI+S    +   +      V           G  +  L  L     + +       
Sbjct: 49  MRAYSIASPN--YEEHLEFFSIKV---------PDGPLTSRLQHLKEGDELMVSRKPT-G 96

Query: 175 KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234
                   P   L L+  GTG APF   +++            +I   G R   +  Y +
Sbjct: 97  TLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPET---YERYEKVILVHGVRWVSELAYAD 153

Query: 235 LWLSHSLNDGVFSEAKGGGF-YVAFSRKQPQ 264
                      F +       Y     ++P 
Sbjct: 154 FITKVLPEHEYFGDQVKEKLIYYPLVTREPF 184

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 28/140 (20%)

Query: 100 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA 159
            V +  +      P  + R +S++  P    +     ++V       KR+  G  S WL 
Sbjct: 190 GVWLKPEGF----PHQEIRQYSLTRKP----DGKGYRIAV-------KREEGGQVSNWLH 234

Query: 160 GLDPQQG----IYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGP 214
                 G    +  PA    G          P+ LI  G G  P    ++  A    +G 
Sbjct: 235 N-HANVGDVVKLVAPA----GDFFMAVADDTPVTLISAGVGQTPMLAMLDTLA---KAGH 286

Query: 215 AAPIIFFFGCRNEDDFLYRE 234
            A + +F    N D   + +
Sbjct: 287 TAQVNWFHAAENGDVHAFAD 306

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271

 Score = 49.4 bits (118), Expect = 6e-07
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 19/148 (12%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI--PAWFQ 174
           TRA+SI S       + HL            + + G  +  L  L     + I       
Sbjct: 65  TRAYSIVSPN----YEEHLEFFS-------IKVQNGPLTSRLQHLKVGDPVLIGKKPT-G 112

Query: 175 KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234
                   P   L ++  GTG APF   + +  I         ++    CR + +  Y +
Sbjct: 113 TLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIY---ERFDKVVLTHTCRLKGELAYMD 169

Query: 235 LWLSHSLNDGVFSEAKGGGF--YVAFSR 260
                        +        Y   +R
Sbjct: 170 YIKHDLPGHEYLGDVIREKLVYYPTVTR 197

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 31/145 (21%), Positives = 46/145 (31%), Gaps = 34/145 (23%)

Query: 100 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-----GLC 154
           SV + +  L       + R +S+S  P    N     +SV       KR+       G  
Sbjct: 192 SVAIDVPAL----GLQQIRQYSLSDMP----NGRTYRISV-------KREGGGPQPPGYV 236

Query: 155 SVWLAGLDPQQG----IYIPAWFQKGSL-PRPPPSVPLILIGPGTGCAPFRGFVEERAIQ 209
           S  L       G    +  P     GS         P++LI  G G  P    ++     
Sbjct: 237 SNLLHD-HVNVGDQVKLAAPY----GSFHIDVDAKTPIVLISGGVGLTPMVSMLKVAL-- 289

Query: 210 SSSGPAAPIIFFFGCRNEDDFLYRE 234
               P   ++F  G RN      R+
Sbjct: 290 --QAPPRQVVFVHGARNSAVHAMRD 312

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score = 46.3 bits (110), Expect = 6e-06
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 11/127 (8%)

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI------- 169
            RA++ +S          L V V       K    GL + +L  L     I +       
Sbjct: 61  MRAYTPTSMVDE-IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHV 119

Query: 170 --PAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNE 227
                       +   +  L +I  G+G  P    + +  ++        +   +  R E
Sbjct: 120 EYTGRGSFVINGKQRNARRLAMICGGSGITPMYQ-IIQAVLRDQPEDHTEMHLVYANRTE 178

Query: 228 DDFLYRE 234
           DD L R+
Sbjct: 179 DDILLRD 185

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 24/121 (19%), Positives = 36/121 (29%), Gaps = 19/121 (15%)

Query: 118 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYI--PAW-FQ 174
           RA+S  +SP    +   L   +            G  S  LA L P   + +   A  F 
Sbjct: 50  RAYSYVNSP----DNPDLEFYL-------VTVPDGKLSPRLAALKPGDEVQVVSEAAGF- 97

Query: 175 KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234
              L   P    L ++  GT   P+   +              ++     R   D  Y  
Sbjct: 98  -FVLDEVPHCETLWMLATGTAIGPYLSILRLGKDL---DRFKNLVLVHAARYAADLSYLP 153

Query: 235 L 235
           L
Sbjct: 154 L 154

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 27/121 (22%), Positives = 40/121 (33%), Gaps = 21/121 (17%)

Query: 118 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS 177
           R ++  SS         L +         K    G  S ++  L+P   + +     +G 
Sbjct: 61  RPYTPVSSD-DEKGYFDLII---------KVYEKGQMSQYIDHLNPGDFLQV-----RGP 105

Query: 178 LPR----PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYR 233
             +    P     + +I  GTG  P       RAI  +      I   F   NEDD L R
Sbjct: 106 KGQFDYKPNMVKEMGMIAGGTGITPMLQVA--RAIIKNPKEKTIINLIFANVNEDDILLR 163

Query: 234 E 234
            
Sbjct: 164 T 164

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 29/132 (21%), Positives = 38/132 (28%), Gaps = 18/132 (13%)

Query: 118 RAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI---------- 167
           R ++  SS       V L + V    T  K    G  S +L  +     I          
Sbjct: 66  RPYTPISSDDD-KGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLV 124

Query: 168 YIPAW-----FQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFF 222
           Y           K S P       + +I  GTG  P    +  RAI             F
Sbjct: 125 YQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVI--RAIMKDPDDHTVCHLLF 182

Query: 223 GCRNEDDFLYRE 234
             + E D L R 
Sbjct: 183 ANQTEKDILLRP 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 53/383 (13%), Positives = 102/383 (26%), Gaps = 113/383 (29%)

Query: 6   VSQVQHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDV--TSASPRRYFF-EVMSYFATAE 62
             + Q++    Y  DI      + +    FV+   D       P+     E + +   ++
Sbjct: 11  TGEHQYQ----Y-KDI------LSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSK 58

Query: 63  HEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLV------PPLK 116
                             +    K+   V + +E+   +++   +L+  +      P + 
Sbjct: 59  DAVSGTLRL--------FWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSMM 108

Query: 117 TRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSV-----------------WLA 159
           TR +      L + NQV    +V     PY + R  L  +                 W+A
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 160 G-----LDPQQ----GIYIPAWFQKGSLPRPPPSVPLIL------------IGPGTGCAP 198
                    Q      I+   W    +   P  +V  +L                     
Sbjct: 168 LDVCLSYKVQCKMDFKIF---WLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 199 FRGFVEERA-----IQSSSGPAAPII------------FFFGCRNEDDFLYRELWLSHSL 241
                  +A     ++S       ++            F   C+           L  + 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI----------LLTTR 273

Query: 242 NDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD 301
              V  +          S           ++          LL K   Y+      +P +
Sbjct: 274 FKQVT-DFLSAATTTHISLDHHSMTLTPDEVKS--------LLLK---YLDCRPQDLPRE 321

Query: 302 VWSTFEEIVSKEGEASRDSAANW 324
           V +T    +S   E+ RD  A W
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATW 344

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243

 Score = 39.5 bits (93), Expect = 7e-04
 Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 39/142 (27%)

Query: 109 VQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRT-----GLCSVWL- 158
           +++ P      + R +S+S +     N     +SV       KR+       GL S +L 
Sbjct: 42  IEVTPEGSDYREIRQYSLSHAS----NGREYRISV-------KREGVGSDNPGLVSHYLH 90

Query: 159 ----AG--LDPQQGIYIPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSS 212
                G  +     +Y PA    G         P++LI  G G  P +  +   A Q   
Sbjct: 91  NNVKVGDSVK----LYAPA----GDFFYVERERPVVLISAGVGATPMQAILHTLAKQ--- 139

Query: 213 GPAAPIIFFFGCRNEDDFLYRE 234
              + + + + C +  +  + +
Sbjct: 140 -NKSGVTYLYACNSAKEHTFAQ 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	100.0
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	100.0
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	100.0
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	100.0
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	100.0
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	100.0
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	100.0
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	100.0
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	100.0
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	100.0
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	100.0
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	100.0
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	100.0
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	100.0
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	100.0
1tvc_A	250	Methane monooxygenase component C, methane monooxy	99.96
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	99.96
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	99.96
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	99.96
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.96
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	99.95
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	99.95
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	99.95
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	99.95
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	99.95
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	99.95
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	99.95
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	99.94
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	99.94
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	99.94
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	99.94
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.93
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.83
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.79
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.76
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.75

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=100.00  E-value=2.6e-70  Score=539.19  Aligned_cols=309  Identities=36%  Similarity=0.684  Sum_probs=286.5

Q ss_pred             CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCC--cCHHHHHHHHHhCCCCHHHHHhhCCC
Q 019521           23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFPS  100 (340)
Q Consensus        23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~--~~~~~~~~~~~~~~~~~~dvl~~fps  100 (340)
                      +.|+|.++|++++|++|+||++ +|+++||+.||.||+|+.+|++|.+|++.  +|.++|.+|+.+++++++|||.+||+
T Consensus       139 ~~p~~~~~tl~~~l~~~~di~~-~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~~~~~ildvL~~fps  217 (458)
T 3qfs_A          139 KHPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPS  217 (458)
T ss_dssp             CCSSSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHHHSCSHHHHHHHHHHTTTTTCCHHHHHHHSTT
T ss_pred             CCCCCCCeeHHHHHHhcEeccC-CCCHHHHHHHHHHcCCHHHHHHHHHHhccCcccHHHHHHHHhhcCCCHHHHHHhCCc
Confidence            4679999999999999999999 99999999999999999999999999974  68899999999999999999999999


Q ss_pred             CCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCc------EEEEEee
Q 019521          101 VQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI------YIPAWFQ  174 (340)
Q Consensus       101 ~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~------~v~v~~~  174 (340)
                      +++|+++|++.+|+++||+|||||+|..+++.++|+|++|+|++..++.+.|+||+||+++.+  |+      .|.+.+|
T Consensus       218 ~~~p~~~ll~~lp~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~--gg~~~~~~~v~v~~p  295 (458)
T 3qfs_A          218 LRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEP--VGENGGRALVPMFVR  295 (458)
T ss_dssp             BCCCHHHHHHHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCS--SCSSCCCCEEEEEEE
T ss_pred             cCCCHHHHHhhCCCCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhcc--CCccCCceEEEEEec
Confidence            999999999999999999999999998778999999999999998888999999999998876  54      6999999


Q ss_pred             cCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCC
Q 019521          175 KGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKG  251 (340)
Q Consensus       175 ~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~  251 (340)
                      .|.|.+| ++.+|+||||+|||||||++|++++......+ ..++++||||||+. .|++|++||++|.+. +.++    
T Consensus       296 ~g~F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~dEl~~l~~~-g~l~----  370 (458)
T 3qfs_A          296 KSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD-GALT----  370 (458)
T ss_dssp             CCSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHH-TSSS----
T ss_pred             CCCcccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHHHHHHHHHHc-CCCC----
Confidence            9999999 77899999999999999999999986422111 23789999999997 499999999999988 6665    


Q ss_pred             CcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 019521          252 GGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRA  331 (340)
Q Consensus       252 ~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~  331 (340)
                       +++++|||++..++||||.+.++.+.+|+++.+++.||||||++.|+++|.++|.+|+++++++++++|++|+++|+++
T Consensus       371 -~l~~a~SRd~~~k~yVqd~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~A~~~~~~l~~~  449 (458)
T 3qfs_A          371 -QLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTK  449 (458)
T ss_dssp             -EEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             -EEEEEEECCCCCcccHhHHHHHhHHHHHHHhcCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence             8999999999889999999999999999999789999999997689999999999999999999999999999999999


Q ss_pred             CCEEEeecC
Q 019521          332 GRYHVEAWS  340 (340)
Q Consensus       332 ~R~~~d~w~  340 (340)
                      |||++||||
T Consensus       450 ~RY~~Dvws  458 (458)
T 3qfs_A          450 GRYSLDVWS  458 (458)
T ss_dssp             TSEEEEEEC
T ss_pred             CCeEEEecC
Confidence            999999998

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=100.00  E-value=8.5e-68  Score=531.47  Aligned_cols=308  Identities=31%  Similarity=0.580  Sum_probs=278.3

Q ss_pred             CCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCC
Q 019521           24 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM  103 (340)
Q Consensus        24 ~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~  103 (340)
                      .++|.++|++++|++|+||++ +|++.||+.||.||+|+.+|++|.+|++++|.++|++|+.+++++++|+|.+||++++
T Consensus       199 ~~~p~~~tl~~~L~~~lDi~~-~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~~~~~~~~~~~~lldvL~~fps~~~  277 (539)
T 2qtl_A          199 QHIPAGCSLQFIFTWCLEIRA-IPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACACLLDLLLAFPSCQP  277 (539)
T ss_dssp             TTSCTTCBHHHHHHHTBCTTS-CCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHHHHHHTTTTTCCHHHHHHHSTTBCC
T ss_pred             CCCCCcccHHHHHHHHhhhcC-CCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHHHHHHHhhcCCCHHHHHHhCCCcCC
Confidence            458899999999999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecC--CCCCccCCCCccccccC-----------CCCCCc---
Q 019521          104 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTT--PYKRKRTGLCSVWLAGL-----------DPQQGI---  167 (340)
Q Consensus       104 p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~--~~~~~~~G~~S~~L~~l-----------~~~~G~---  167 (340)
                      |+++++..+|+++||+|||||+|..+++.++|+|++|+|++  ..++.+.|+||+||+++           ++  |+   
T Consensus       278 p~~~ll~~lp~l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~--Gd~~~  355 (539)
T 2qtl_A          278 PLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASH--EDSGK  355 (539)
T ss_dssp             CHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC---------------
T ss_pred             CHHHHHHhCcCCcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCC--CCccc
Confidence            99999999999999999999999766899999999999954  34566789999999987           78  99   


Q ss_pred             ----EEEEEeecC-CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCC---CCCCCEEEEEeccCCc-hhhhHHHHH
Q 019521          168 ----YIPAWFQKG-SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSS---GPAAPIIFFFGCRNED-DFLYRELWL  237 (340)
Q Consensus       168 ----~v~v~~~~g-~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~---~~~~~~~L~~G~R~~~-d~ly~~eL~  237 (340)
                          .|.+.+|.| .|.+| +..+|+||||+|||||||+||++++......   ...++++||||||+++ |++|++||+
T Consensus       356 ~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~dEL~  435 (539)
T 2qtl_A          356 ALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELR  435 (539)
T ss_dssp             -CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTHHHHH
T ss_pred             cCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHHHHHH
Confidence                999999986 89999 7789999999999999999999998654311   1238999999999995 999999999


Q ss_pred             HhHhcCCCccccCCCcEEEEEecCCC------CccchhhhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521          238 SHSLNDGVFSEAKGGGFYVAFSRKQP------QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIV  310 (340)
Q Consensus       238 ~~~~~~g~l~~~~~~~~~~a~Sr~~~------~~~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~  310 (340)
                      +|.+. +.+.     +++++|||++.      .++||||.|.+..+.+|+++ .++++||||||++.|+++|.++|.+++
T Consensus       436 ~~~~~-g~~~-----~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~~a~vYVCGp~~~M~~~V~~~L~~i~  509 (539)
T 2qtl_A          436 HFLKH-GILT-----HLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQII  509 (539)
T ss_dssp             HHHHT-TSSC-----EEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             HHHHh-CCCc-----EEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            99987 5443     89999999976      68999999999999999998 458999999997689999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHCCCEEEeecC
Q 019521          311 SKEGEASRDSAANWLKALQRAGRYHVEAWS  340 (340)
Q Consensus       311 ~~~~~~~~~~a~~~~~~l~~~~R~~~d~w~  340 (340)
                      ++++++++++|++|+++|+++|||++||||
T Consensus       510 ~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw~  539 (539)
T 2qtl_A          510 SKEVGVEKLEAMKTLATLKEEKRYLQDIWS  539 (539)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCcEEEEcCC
Confidence            999999999999999999999999999997

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=100.00  E-value=1.1e-67  Score=539.77  Aligned_cols=310  Identities=37%  Similarity=0.693  Sum_probs=288.3

Q ss_pred             CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhc--CCcCHHHHHHHHHhCCCCHHHHHhhCCC
Q 019521           23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFA--SPEGRDDLYKYNQKERRTVLEVLEDFPS  100 (340)
Q Consensus        23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~~~~~dvl~~fps  100 (340)
                      +.|+|.|+|++++|++|+||++ +|+++||+.||.||+|+.+|++|.+|+  +++|.++|++|+.+++++++|+|.+||+
T Consensus       299 ~~~~p~~~tl~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~i~dvL~~fps  377 (618)
T 3qe2_A          299 KHPFPCPTSYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVEARRHILAILQDCPS  377 (618)
T ss_dssp             CSSSSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTTTTTCCHHHHHHHSTT
T ss_pred             CCCCCCceEHHHhhhhEeecCC-CCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHhhcCCCHHHHHHhCCc
Confidence            4679999999999999999999 999999999999999999999999999  6789999999999999999999999999


Q ss_pred             CCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCc-----EEEEEeec
Q 019521          101 VQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI-----YIPAWFQK  175 (340)
Q Consensus       101 ~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~-----~v~v~~~~  175 (340)
                      +++|+++|+..+|+++||+|||||+|..+++.++|+|++|.|+++.++.+.|+||+||+++.+. |+     .|.+.+|.
T Consensus       378 ~~~p~~~l~~~lp~l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~-Gd~~~~~~v~v~~p~  456 (618)
T 3qe2_A          378 LRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPV-GENGGRALVPMFVRK  456 (618)
T ss_dssp             BCCCHHHHHHHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC------CCEEEEEEEC
T ss_pred             cCCCHHHHHHhccccccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhccc-CCCCcceEEEEEEec
Confidence            9999999999999999999999999987789999999999999988889999999999987541 66     99999999


Q ss_pred             CCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCC
Q 019521          176 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG  252 (340)
Q Consensus       176 g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~  252 (340)
                      |.|.+| ++.+|+||||+|||||||+||++++......+ ..++++||||||+++ |++|++||++|.+. |.++     
T Consensus       457 g~F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~~el~~~~~~-g~l~-----  530 (618)
T 3qe2_A          457 SQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYREELAQFHRD-GALT-----  530 (618)
T ss_dssp             CSCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTHHHHHHHHHH-TSSS-----
T ss_pred             CcccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchHHHHHHHHhc-CCCc-----
Confidence            999999 77899999999999999999999998643222 247899999999996 99999999999988 7776     


Q ss_pred             cEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019521          253 GFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAG  332 (340)
Q Consensus       253 ~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~  332 (340)
                      +++++|||++.+++||||.+.++.+.+++++.+++.||||||++.|+++|.++|.+++++++++++++|++|+++|+++|
T Consensus       531 ~l~~a~Srd~~~k~yVqd~l~~~~~~l~~~l~~~a~vYvCGp~~~M~~~V~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~  610 (618)
T 3qe2_A          531 QLNVAFSREQSHKVYVQHLLKQDREHLWKLIEGGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKG  610 (618)
T ss_dssp             EEEEEETTSSSSCCCHHHHHHHTHHHHHHHHHHTCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCCCcHHHHHHHhHHHHHHHHhCCcEEEEECCchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            89999999998899999999999999999886699999999976999999999999999999999999999999999999


Q ss_pred             CEEEeecC
Q 019521          333 RYHVEAWS  340 (340)
Q Consensus       333 R~~~d~w~  340 (340)
                      ||++||||
T Consensus       611 RY~~Dv~s  618 (618)
T 3qe2_A          611 RYSLDVWS  618 (618)
T ss_dssp             SEEEEEEC
T ss_pred             CeEEeecC
Confidence            99999998

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=100.00  E-value=6.7e-67  Score=507.46  Aligned_cols=304  Identities=30%  Similarity=0.508  Sum_probs=274.6

Q ss_pred             CCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCC
Q 019521           23 KNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQ  102 (340)
Q Consensus        23 ~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~  102 (340)
                      +.|++.|+|++++|++ +||++ +|+++||+.||.||+|+.+|++|++|++.   ++|.+++..++++++|+|.+||+++
T Consensus        82 ~~p~~~~~tl~~~l~~-~di~~-~~~~~~l~~la~~~~~~~~~~~L~~l~~~---~~~~~~~~~~~~~~ldvL~~fps~~  156 (393)
T 4dql_A           82 HLPLAKTVSVEELLQY-VELQD-PVTRTQLRAMAAKTVCPPHKVELEALLEK---QAYKEQVLAKRLTMLELLEKYPACE  156 (393)
T ss_dssp             -----CCEEHHHHTTS-BCSSS-BCCHHHHHHHHHTCCSHHHHHHHHHTTSH---HHHHHHTTTTTCBHHHHHHHCTTCC
T ss_pred             cCCCCCcEEHHHHHHh-ccccC-CCCHHHHHHHHHhCCCHHHHHHHHHHhCc---hHHHHHHhccCCCHHHHHHhCCCCC
Confidence            3467789999999999 99999 99999999999999999999999999873   3799999999999999999999999


Q ss_pred             CCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCC-ccCCCCccccccCCCCCCcEEEE--EeecCCCC
Q 019521          103 MPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR-KRTGLCSVWLAGLDPQQGIYIPA--WFQKGSLP  179 (340)
Q Consensus       103 ~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~-~~~G~~S~~L~~l~~~~G~~v~v--~~~~g~F~  179 (340)
                      +|+++++..+|+++||+|||||+|..+++.++|+|+++.+++..++ .+.|.||+||+++++  |+.|.+  .+|.|.|.
T Consensus       157 ~p~~~~l~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~--Gd~v~v~v~~P~g~F~  234 (393)
T 4dql_A          157 MKFSEFIALLPSIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQE--GDTITCFISTPQSEFT  234 (393)
T ss_dssp             CCHHHHHHTSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCT--TCEEEEEEECCSSCCC
T ss_pred             CCHHHHHHhCCCCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCC--cCEEEEEEEcCCCCcc
Confidence            9999999999999999999999998778999999999999875543 356999999999999  999994  56789999


Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      +| +..+|+||||+|||||||+||++++......+ ..++++||||||++ .|++|++||+++.+. |.+      ++++
T Consensus       235 lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~-~~l------~l~~  307 (393)
T 4dql_A          235 LPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLYQEELENAQSE-GII------TLHT  307 (393)
T ss_dssp             CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSC------EEEE
T ss_pred             cCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHHHHHHHHHHhC-CCe------EEEE
Confidence            99 77889999999999999999999976543222 24789999999996 599999999999988 999      9999


Q ss_pred             EEec-CCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEE
Q 019521          257 AFSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH  335 (340)
Q Consensus       257 a~Sr-~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~  335 (340)
                      +||| ++..++||||.+.++.+.+++++.++++||||||+..|+++|.++|.+++++++|++.++|++|+++|+++|||+
T Consensus       308 a~Sr~~~~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~  387 (393)
T 4dql_A          308 AFSRMPNQPKTYVQHVMEQDGKKLIELLDQGAHFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYA  387 (393)
T ss_dssp             EESSCTTSCCCCHHHHHHHTHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEeCCCCCCCcchhhHHHhCHHHHHHHHhCCcEEEEECCchhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence            9999 555789999999999999999988899999999976999999999999999999999999999999999999999


Q ss_pred             EeecC
Q 019521          336 VEAWS  340 (340)
Q Consensus       336 ~d~w~  340 (340)
                      +||||
T Consensus       388 ~dv~s  392 (393)
T 4dql_A          388 KDVWA  392 (393)
T ss_dssp             EEEEC
T ss_pred             EEecc
Confidence            99997

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=100.00  E-value=1.2e-64  Score=498.03  Aligned_cols=304  Identities=34%  Similarity=0.627  Sum_probs=276.9

Q ss_pred             CCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCC
Q 019521           24 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM  103 (340)
Q Consensus        24 ~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~  103 (340)
                      .++| ++|++++|++|+||++ +|+++||+.||.||+|+.+|++|++|++  +.++|.+|+...+++++|+|.+||++++
T Consensus       121 ~~~p-~~tl~~~l~~~~di~~-~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~i~~vl~~fps~~~  196 (435)
T 1f20_A          121 SRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQM  196 (435)
T ss_dssp             CSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCB
T ss_pred             CCCC-CccHHHHHHhceecCC-CCCHHHHHHHHHHCCCHHHHHHHHHhhc--CHHHHHHHHhccCCCHHHHHHhCCcCCC
Confidence            4577 9999999999999999 9999999999999999999999999997  7889999999999999999999999999


Q ss_pred             CHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCC--CccCCCCccccccCCCCCCcEEEEEee-cCCCCC
Q 019521          104 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RKRTGLCSVWLAGLDPQQGIYIPAWFQ-KGSLPR  180 (340)
Q Consensus       104 p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~--~~~~G~~S~~L~~l~~~~G~~v~v~~~-~g~F~l  180 (340)
                      |+++++..+|++++|+|||||+|..+++.++|+|++++|.++.+  +.+.|.||+||.++++  |+.|.+.++ .|.|.+
T Consensus       197 p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~--Gd~v~v~~~~~g~F~l  274 (435)
T 1f20_A          197 PATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVPCFVRGAPSFHL  274 (435)
T ss_dssp             CHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCT--TCEEEEEEECCTTSSC
T ss_pred             CHHHHHHhCCCCCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCC--CCEEEEEEecCCCccC
Confidence            99999999999999999999999766799999999999977543  4568999999999999  999999995 569999


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcC--CCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~--~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      | +..+|+||||+|||||||+||++++.....  ....++++||||||+++ |++|++||+++.+. +.+.     ++++
T Consensus       275 p~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly~~El~~~~~~-~~~~-----~l~~  348 (435)
T 1f20_A          275 PRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNK-GVFR-----ELYT  348 (435)
T ss_dssp             CSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHT-TSEE-----EEEE
T ss_pred             CCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhHHHHHHHHHHc-CCcc-----EEEE
Confidence            9 778999999999999999999999987420  00138899999999998 99999999999887 5543     8999


Q ss_pred             EEecCCCC-ccchhhhHHHh-HHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 019521          257 AFSRKQPQ-KVYVQHKMLEQ-SQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGR  333 (340)
Q Consensus       257 a~Sr~~~~-~~yVqd~l~~~-~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R  333 (340)
                      +|||++.. ++|||+.+.+. .+.+++++. +++.||||||+ .|+++|.++|.+++++++++++++|++|+++|+++||
T Consensus       349 a~Sr~~~~~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~-~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R  427 (435)
T 1f20_A          349 AYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNR  427 (435)
T ss_dssp             EESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred             EECCCCCCCCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCCh-hHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence            99998764 89999999988 788888774 58999999999 9999999999999999999999999999999999999


Q ss_pred             EEEeecC
Q 019521          334 YHVEAWS  340 (340)
Q Consensus       334 ~~~d~w~  340 (340)
                      |++|||+
T Consensus       428 Y~~Dv~~  434 (435)
T 1f20_A          428 YHEDIFG  434 (435)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999997

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=100.00  E-value=5.8e-64  Score=517.29  Aligned_cols=309  Identities=30%  Similarity=0.536  Sum_probs=276.3

Q ss_pred             CCCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCC--
Q 019521           22 HKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFP--   99 (340)
Q Consensus        22 ~~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fp--   99 (340)
                      .+.|+|.++|++++|++|+||++ +|+++||+.||.||+|+.+|++|++|+  ++.++|.+|+.+++++++|+|.+||  
T Consensus       333 ~~~p~p~~~tl~~~l~~~ldi~~-~p~~~~l~~la~~a~~~~~k~~L~~l~--~~~~~~~~~~~~~~~~i~dvL~~fp~~  409 (682)
T 2bpo_A          333 VKVPFPTPTTIGAAIKHYLEITG-PVSRQLFSSLIQFAPNADVKEKLTLLS--KDKDQFAVEITSKYFNIADALKYLSDG  409 (682)
T ss_dssp             CCCSSCSSEEHHHHHHHTBCCSS-CCCHHHHHHHSTTCSSHHHHHHHHHHT--TCHHHHHHHTGGGTCCHHHHHHHHHTT
T ss_pred             cCCCCCCCccHHHHHHHhhhccC-CCCHHHHHHHHHHCCCHHHHHHHHHhc--cCHHHHHHHHhcCCCCHHHHHHhccCc
Confidence            35679999999999999999999 999999999999999999999999999  5999999999999999999999999  


Q ss_pred             --CCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCC---CCccCCCCccccccCCCC----------
Q 019521          100 --SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPY---KRKRTGLCSVWLAGLDPQ----------  164 (340)
Q Consensus       100 --s~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~---~~~~~G~~S~~L~~l~~~----------  164 (340)
                        ++++|+++++..+|+++||+|||||+|..+++.++|+|++++|+++.   ++.+.|+||+||.++++.          
T Consensus       410 ~~s~~~p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~  489 (682)
T 2bpo_A          410 AKWDTVPMQFLVESVPQMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETN  489 (682)
T ss_dssp             CCCTTSCHHHHHHHSCBCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSC
T ss_pred             ccccCCCHHHHHHhCcccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccc
Confidence              89999999999999999999999999987789999999999999876   677899999999876540          


Q ss_pred             CCc--------------EEEEEeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcC------CC-CCCCEEEEE
Q 019521          165 QGI--------------YIPAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS------SG-PAAPIIFFF  222 (340)
Q Consensus       165 ~G~--------------~v~v~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~------~~-~~~~~~L~~  222 (340)
                      .|+              .|.+.++.+.|++| ++.+|+||||+|||||||+||++++.....      .+ ..++++|||
T Consensus       490 ~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~~~~~~L~f  569 (682)
T 2bpo_A          490 LPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFY  569 (682)
T ss_dssp             CCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCCCCCEEEEE
T ss_pred             cccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCCcCCEEEEE
Confidence            033              45555555567888 678999999999999999999999987643      11 248999999


Q ss_pred             eccCCchhhhHHHHHHhH-hcCCCccccCCCcEEEEEec-CCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHH
Q 019521          223 GCRNEDDFLYRELWLSHS-LNDGVFSEAKGGGFYVAFSR-KQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPS  300 (340)
Q Consensus       223 G~R~~~d~ly~~eL~~~~-~~~g~l~~~~~~~~~~a~Sr-~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~  300 (340)
                      |||++.|++|++||++|. +....+      +++++||| ++..++||||.|.+..+.+++++.++++||||||+..|++
T Consensus       570 G~R~~~D~ly~dEl~~~~~~~g~~~------~l~~afSr~d~~~k~yVqd~l~e~~~~l~~~l~~~~~vYvCGpa~~M~~  643 (682)
T 2bpo_A          570 GSRNTDDFLYQDEWPEYAKKLDGSF------EMVVAHSRLPNTKKVYVQDKLKDYEDQVFEMINNGAFIYVCGDAKGMAK  643 (682)
T ss_dssp             EESSSSSCTTTTTHHHHHHHHGGGE------EEEEEESCCTTSCCCCHHHHHHHTHHHHHHHHTTTCEEEEEECSTTHHH
T ss_pred             ecCChhhhhhHHHHHHHHHhcCCce------EEEEEECCCCCCCCcchHHHHHhhHHHHHHHHhCCcEEEEeCCchHhHH
Confidence            999999999999999995 441345      89999999 5567999999999999999999877999999999449999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          301 DVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       301 ~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus       644 ~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw  682 (682)
T 2bpo_A          644 GVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW  682 (682)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            999999999999999999999999999999999999999

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=100.00  E-value=2.1e-60  Score=459.35  Aligned_cols=290  Identities=30%  Similarity=0.535  Sum_probs=262.1

Q ss_pred             cCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCHH
Q 019521           27 EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPID  106 (340)
Q Consensus        27 ~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~~  106 (340)
                      +.++|++++|++|+||+.  |+++||+.||.||+|+.    |.+|++  +.+.|.+|+.  +++++|+|.+||+ .++..
T Consensus        81 ~~~~tl~~~l~~~~di~~--p~~~~l~~la~~~~~~~----L~~l~~--~~~~~~~~~~--~~~~~~vl~~~p~-~~~~G  149 (374)
T 1ddg_A           81 GKTLPLNEALQWHFELTV--NTANIVENYATLTRSET----LLPLVG--DKAKLQHYAA--TTPIVDMVRFSPA-QLDAE  149 (374)
T ss_dssp             TEEEEHHHHHHHHBCCSC--CCHHHHHHHHHHHTCTT----TGGGTT--CTHHHHHHHH--HSCHHHHHHHSCC-CCCHH
T ss_pred             CCCccHHHHHHhcccCCC--CCHHHHHHHHHHCCCHH----HHHHhc--ChHHHHHHHc--CCCHHHHHHHCCC-CCCHH
Confidence            358999999999999994  79999999999999974    888885  7788999987  5899999999998 66666


Q ss_pred             HHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeec-CCCCCC-CC
Q 019521          107 WLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK-GSLPRP-PP  183 (340)
Q Consensus       107 ~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~-g~F~l~-~~  183 (340)
                      .++..++++.+|+|||||+|..+++.++|+|++|.|.+. ++.+.|.||+||++ +++  |+.|.+.+|. |.|.+| +.
T Consensus       150 q~v~l~~~~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~--Gd~v~v~~~~~g~F~lp~~~  226 (374)
T 1ddg_A          150 ALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEE--EGEVRVFIEHNDNFRLPANP  226 (374)
T ss_dssp             HHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCS--SCEEEEEEECCTTSCCCSST
T ss_pred             HHHhhccCCCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCC--CCEEEEEEeeCCCccCCCCC
Confidence            667777889999999999997667999999999999885 66678999999997 999  9999999955 589998 77


Q ss_pred             CCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCC-chhhhHHHHHHhHhcCCCccccCCCcEEEEEecCC
Q 019521          184 SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNE-DDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ  262 (340)
Q Consensus       184 ~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~-~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~  262 (340)
                      .+|+||||+|||||||+||++++......   ++++||||||++ .|++|++||+++.+. +.+.     +++++|||++
T Consensus       227 ~~piimIa~GtGIAP~~s~l~~~~~~~~~---~~~~L~~G~R~~~~d~ly~~El~~~~~~-~~~~-----~l~~a~Srd~  297 (374)
T 1ddg_A          227 ETPVIMIGPGTGIAPFRAFMQQRAADEAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKE-GVLT-----RIDLAWSRDQ  297 (374)
T ss_dssp             TSCEEEECCGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCHHHHCTTHHHHHHHHHT-TSCC-----EEEEEETTSS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHhcCCC---CCEEEEEEeCCchhhhhHHHHHHHHHHh-CCCc-----EEEEEEecCC
Confidence            89999999999999999999999887654   889999999998 499999999999887 5443     8999999998


Q ss_pred             CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          263 PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       263 ~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      ..++|||+.+.+..+.+++++.++++|||||++.+|+++|.++|.+++++++++++++|++|+++|+++|||++|||
T Consensus       298 ~~k~yVq~~l~~~~~~l~~~l~~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv~  374 (374)
T 1ddg_A          298 KEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY  374 (374)
T ss_dssp             SSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCccHHHHHHHhHHHHHHHHhCCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Confidence            88999999999998999998877999999993349999999999999999999999999999999999999999999

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=100.00  E-value=2.1e-60  Score=490.99  Aligned_cols=304  Identities=34%  Similarity=0.626  Sum_probs=276.4

Q ss_pred             CCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCC
Q 019521           24 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM  103 (340)
Q Consensus        24 ~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~  103 (340)
                      .++| ++|++++|++|+||++ +|+++||+.||.||+|+.+|++|++|++  +.++|.+|+...+++++|+|.+||++++
T Consensus       342 ~~~p-~~tl~~~l~~~lDi~~-~p~~~~l~~la~~a~~~~ek~~L~~l~~--~~~~~~~~~~~~~~~i~evl~~fps~~~  417 (688)
T 1tll_A          342 SRLP-PCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQM  417 (688)
T ss_dssp             CSSC-SBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCC
T ss_pred             CCCC-CccHHHHHHhheeCCC-CCCHHHHHHHHHHcCCHHHHHHHHHHhc--CHHHHHHHHhhcCCCHHHHHHhCCCcCC
Confidence            4577 9999999999999999 9999999999999999999999999997  7889999999999999999999999999


Q ss_pred             CHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCC--CccCCCCccccccCCCCCCcEEEEEee-cCCCCC
Q 019521          104 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK--RKRTGLCSVWLAGLDPQQGIYIPAWFQ-KGSLPR  180 (340)
Q Consensus       104 p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~--~~~~G~~S~~L~~l~~~~G~~v~v~~~-~g~F~l  180 (340)
                      |+++++..+|++.+|+|||||+|..+++.++|+|+++.|.++.+  +.+.|.||+||.++++  |+.|.+.++ .|.|.+
T Consensus       418 p~~~l~~~lp~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~--Gd~v~v~~~p~g~F~l  495 (688)
T 1tll_A          418 PATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVPCFVRGAPSFHL  495 (688)
T ss_dssp             CHHHHHHHSCBCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCT--TSEEEEEEECCGGGSC
T ss_pred             CHHHHHHhCcccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCC--CCEEEEEeccCCCccc
Confidence            99999999999999999999999766799999999999976543  4568999999999999  999999995 459999


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcC--CCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~--~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      | +..+|+||||+|||||||++|++++.....  .+..++++||||||+++ |++|++||+++.+. +.+.     ++++
T Consensus       496 p~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly~dEL~~~~~~-~~~~-----~l~~  569 (688)
T 1tll_A          496 PRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNK-GVFR-----ELYT  569 (688)
T ss_dssp             CSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTTHHHHHHHHHT-TSEE-----EEEE
T ss_pred             CcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhHHHHHHHHHHc-CCce-----EEEE
Confidence            8 678999999999999999999999987521  01238899999999998 99999999999887 5443     8999


Q ss_pred             EEecCCCC-ccchhhhHHHh-HHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 019521          257 AFSRKQPQ-KVYVQHKMLEQ-SQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGR  333 (340)
Q Consensus       257 a~Sr~~~~-~~yVqd~l~~~-~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R  333 (340)
                      +|||++.. ++|||++|.+. .+.+++.+ .++++||||||+ +|+++|.++|.+++++++|+++++|++|+++|+.++|
T Consensus       570 a~Sr~~~~~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~-~M~~~V~~~L~~i~~~~gg~~~~~a~~~l~~l~~~~r  648 (688)
T 1tll_A          570 AYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNR  648 (688)
T ss_dssp             EESSCTTSCCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEEH-HHHHHHHHHHHHHHHTTTCCCTTHHHHHHHHHHHTTC
T ss_pred             EECCCCCCCccchhhhhHHhHHHHHHHhhccCCcEEEEeCCH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhcCC
Confidence            99998764 89999999988 78888877 458999999998 9999999999999999999999999999999999999


Q ss_pred             EEEeecC
Q 019521          334 YHVEAWS  340 (340)
Q Consensus       334 ~~~d~w~  340 (340)
                      |+.|+|+
T Consensus       649 y~~Evf~  655 (688)
T 1tll_A          649 YHEDIFG  655 (688)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecC
Confidence            9999995

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=100.00  E-value=5.7e-40  Score=309.18  Aligned_cols=225  Identities=26%  Similarity=0.415  Sum_probs=194.5

Q ss_pred             CCCHHHHHHhcCCC-------CcceeecCCCCCC---CCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEE
Q 019521          102 QMPIDWLVQLVPPL-------KTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPA  171 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-------~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v  171 (340)
                      ..||||+...+|..       .+|+|||+|+|..   +++.++|+|+++.|.+..++.+.|.||+||+++++  |+.|.+
T Consensus        66 ~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v  143 (310)
T 3vo2_A           66 YREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKP--GADVKI  143 (310)
T ss_dssp             CCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCT--TCEEEE
T ss_pred             ccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCC--CCEEEE
Confidence            47899988877753       5899999999853   36899999999988876666778999999999999  999999


Q ss_pred             EeecCCCC-CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHhHhcCC-Cc
Q 019521          172 WFQKGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF  246 (340)
Q Consensus       172 ~~~~g~F~-l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l  246 (340)
                      .+|.|.|. +| +..+|+||||+|||||||++|++++.......  ..++++||||||+.+|++|.+||+++.+.++ ++
T Consensus       144 ~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~  223 (310)
T 3vo2_A          144 TGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNF  223 (310)
T ss_dssp             EEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTE
T ss_pred             EeccCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCE
Confidence            99999765 45 56789999999999999999999988654221  1368999999999999999999999988743 78


Q ss_pred             cccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHH
Q 019521          247 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA  321 (340)
Q Consensus       247 ~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a  321 (340)
                            ++++++||++.    .++|||+.+.+..+.+++.+. +++.||+|||+ .|+++|+++|.+++.+.+ .   ++
T Consensus       224 ------~v~~~~sr~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGp~-~M~~~v~~~L~~~~~~~g-~---~~  292 (310)
T 3vo2_A          224 ------RLDFAVSREQTNAAGEKMYIQTRMAEYREELWELLKKDNTYVYMCGLK-GMEKGIDDIMLNLAAKDG-I---DW  292 (310)
T ss_dssp             ------EEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEEST-THHHHHHHHHHHHHHHTT-C---CH
T ss_pred             ------EEEEEECCCCCCCCCcceehHHHHHHHHHHHHHhcccCCcEEEEeCCH-HHHHHHHHHHHHHHHHcC-c---CH
Confidence                  89999999864    478999999998888888775 48999999998 999999999999998764 3   58


Q ss_pred             HHHHHHHHHCCCEEEeec
Q 019521          322 ANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       322 ~~~~~~l~~~~R~~~d~w  339 (340)
                      ++|+++|+++|||++|+|
T Consensus       293 ~~~~~~l~~~~r~~~e~y  310 (310)
T 3vo2_A          293 MQYKKQLKKGEQWNVEVY  310 (310)
T ss_dssp             HHHHHHHHHTTSEEEEEC
T ss_pred             HHHHHHHHHCCceEEecC
Confidence            889999999999999999

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=100.00  E-value=3.4e-39  Score=304.20  Aligned_cols=225  Identities=25%  Similarity=0.414  Sum_probs=190.5

Q ss_pred             CCCHHHHHHhcCC-------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEE
Q 019521          102 QMPIDWLVQLVPP-------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPA  171 (340)
Q Consensus       102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v  171 (340)
                      ..||||+...+|.       ..+|+|||+|+|..   .++.++|+|+.+.|.+..++.+.|.+|+||.++++  |+.|.+
T Consensus        70 ~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~--Gd~v~v  147 (314)
T 1fnb_A           70 YREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKP--GAEVKL  147 (314)
T ss_dssp             CCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCT--TCEEEE
T ss_pred             cCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCC--CCEEEE
Confidence            3789998777664       36899999999853   25899999998888776566678999999999999  999999


Q ss_pred             EeecCCCC-CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHhHhcCC-Cc
Q 019521          172 WFQKGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF  246 (340)
Q Consensus       172 ~~~~g~F~-l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l  246 (340)
                      .+|.|.|. ++ +..+|+||||+|||||||++|++++.......  ..++++||||||+.+|++|.+||+++.+.++ ++
T Consensus       148 ~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~  227 (314)
T 1fnb_A          148 TGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNF  227 (314)
T ss_dssp             EEEECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTE
T ss_pred             EeccCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcE
Confidence            99999865 55 45789999999999999999999988653211  1267999999999999999999999987634 68


Q ss_pred             cccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHH
Q 019521          247 SEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSA  321 (340)
Q Consensus       247 ~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a  321 (340)
                            ++++++||+++    .++||++.+.+..+.+++.+. +++.||+|||+ +|+++|.+.|.+++.+.+ .   ++
T Consensus       228 ------~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~~~~~g-~---~~  296 (314)
T 1fnb_A          228 ------RLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAAEG-I---DW  296 (314)
T ss_dssp             ------EEEEEETTTCBCTTCCBCCHHHHHHTTHHHHHHHTTSTTEEEEEEECT-THHHHHHHHHHHHHHTTT-C---CH
T ss_pred             ------EEEEEECCCCcccCCCceechHHHHHhHHHHHHHHhcCCeEEEEECCH-HHHHHHHHHHHHHHHHhC-c---hH
Confidence                  89999999753    478999999988777777664 58899999998 999999999999988764 3   47


Q ss_pred             HHHHHHHHHCCCEEEeec
Q 019521          322 ANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       322 ~~~~~~l~~~~R~~~d~w  339 (340)
                      ++++++|+++|||++|+|
T Consensus       297 ~~~~~~l~~~~r~~~d~~  314 (314)
T 1fnb_A          297 IEYKRQLKKAEQWNVEVY  314 (314)
T ss_dssp             HHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHHCCcEEEecC
Confidence            889999999999999999

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=100.00  E-value=1.5e-38  Score=299.32  Aligned_cols=225  Identities=28%  Similarity=0.424  Sum_probs=188.7

Q ss_pred             CCCHHHHHHhcCCC---------CcceeecCCCCCC---CCCeEEEEEEEEEecCCCCC----ccCCCCccccccCCCCC
Q 019521          102 QMPIDWLVQLVPPL---------KTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKR----KRTGLCSVWLAGLDPQQ  165 (340)
Q Consensus       102 ~~p~~~l~~~lp~~---------~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~~~----~~~G~~S~~L~~l~~~~  165 (340)
                      ..||||+...+|..         .+|+|||+|+|..   +++.++|+|+++.|.++...    .+.|.+|+||.++++  
T Consensus        61 ~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~--  138 (311)
T 3lo8_A           61 YWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKP--  138 (311)
T ss_dssp             CCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCT--
T ss_pred             ccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCC--
Confidence            47999988888763         6899999999964   25799999987655433221    367999999999999  


Q ss_pred             CcEEEEEeecCCCCC-C--CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHhH
Q 019521          166 GIYIPAWFQKGSLPR-P--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHS  240 (340)
Q Consensus       166 G~~v~v~~~~g~F~l-~--~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~  240 (340)
                      |+.|.+.+|.|.|.+ +  +..+|+||||+|||||||++|++++......+  ..++++||||||+.+|++|.+||+++.
T Consensus       139 Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~  218 (311)
T 3lo8_A          139 GDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYL  218 (311)
T ss_dssp             TCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHH
T ss_pred             cCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHH
Confidence            999999999998765 4  36789999999999999999999988764321  126799999999999999999999998


Q ss_pred             hcCC-CccccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCC
Q 019521          241 LNDG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGE  315 (340)
Q Consensus       241 ~~~g-~l~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~  315 (340)
                      +.++ ++      ++++++||++.    .++||++.+.+..+.+++++.+++.||+|||+ +|+++|+++|.+++.+.+ 
T Consensus       219 ~~~~~~~------~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~~~~~g-  290 (311)
T 3lo8_A          219 KQYPDNF------RYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMPGIQDTLKKVAERRG-  290 (311)
T ss_dssp             HHCTTTE------EEEEEETTTC-------CCHHHHHHHTHHHHHHHHHTTCEEEEEECG-GGHHHHHHHHHHHHHHTT-
T ss_pred             HhCCCcE------EEEEEECCCCcccCCCcceehHHHHHHHHHHHHhhcCCcEEEEECCH-HHHHHHHHHHHHHHHhcc-
Confidence            7643 78      89999999864    47899999999888888777678999999998 999999999999998764 


Q ss_pred             CCHHHHHHHHHHHHHCCCEEEeec
Q 019521          316 ASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       316 ~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                         +++++|+++|+++|||++|+|
T Consensus       291 ---~~~~~~~~~l~~~~ry~~e~y  311 (311)
T 3lo8_A          291 ---ESWDQKLAQLKKNKQWHVEVY  311 (311)
T ss_dssp             ---CCHHHHHHHHHHTTCEEEEEC
T ss_pred             ---HHHHHHHHHHHHCCcEEEecC
Confidence               357899999999999999999

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=100.00  E-value=3e-38  Score=296.25  Aligned_cols=225  Identities=24%  Similarity=0.414  Sum_probs=187.1

Q ss_pred             CCCHHHHHHhcCC-------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCC-CCccCCCCccccccCCCCCCcEEE
Q 019521          102 QMPIDWLVQLVPP-------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQGIYIP  170 (340)
Q Consensus       102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~-~~~~~G~~S~~L~~l~~~~G~~v~  170 (340)
                      ..||||+...+|.       ..+|+|||+|+|..   +++.++|+|+.+.|.++. +..+.|.+|+||.++++  |+.|.
T Consensus        55 ~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~--Gd~v~  132 (304)
T 2bmw_A           55 YIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP--GSEVK  132 (304)
T ss_dssp             CCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCT--TCEEE
T ss_pred             cCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCC--CCEEE
Confidence            4689998777664       35899999999852   358999999988776533 33457999999999999  99999


Q ss_pred             EEeecCCCC-CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcC----CC--CCCCEEEEEeccCCchhhhHHHHHHhHhc
Q 019521          171 AWFQKGSLP-RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS----SG--PAAPIIFFFGCRNEDDFLYRELWLSHSLN  242 (340)
Q Consensus       171 v~~~~g~F~-l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~----~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~~~  242 (340)
                      +.+|.|.|. ++ +..+|+||||+|||||||++|++++.....    ..  ..++++||||||+.+|++|.+||+++.+.
T Consensus       133 v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~  212 (304)
T 2bmw_A          133 ITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQK  212 (304)
T ss_dssp             EEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHH
T ss_pred             EEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHh
Confidence            999999764 56 567899999999999999999998875431    00  12689999999998899999999999876


Q ss_pred             CC-CccccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCC
Q 019521          243 DG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEA  316 (340)
Q Consensus       243 ~g-~l~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~  316 (340)
                      ++ ++      ++++++||++.    .+.|||+.+.+..+.+++++.+ ++.||+|||+ +|+++|+++|.+++.+. |.
T Consensus       213 ~~~~~------~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~~~~~-g~  284 (304)
T 2bmw_A          213 YPDNF------RLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAAAKE-GV  284 (304)
T ss_dssp             CTTTE------EEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECT-THHHHHHHHHHHHHHTT-TC
T ss_pred             CCCcE------EEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHHhhcCCcEEEEECCH-HHHHHHHHHHHHHHHHc-Cc
Confidence            43 68      89999999753    4789999999888888776654 7899999998 99999999999998865 45


Q ss_pred             CHHHHHHHHHHHHHCCCEEEeec
Q 019521          317 SRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       317 ~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +   +++++++|+++|||++|+|
T Consensus       285 ~---~~~~~~~m~~~~ry~~e~~  304 (304)
T 2bmw_A          285 T---WSDYQKDLKKAGRWHVETY  304 (304)
T ss_dssp             C---HHHHHHHHHHTTCEEEEEC
T ss_pred             c---HHHHHHHHHHcCCeEEecC
Confidence            4   6779999999999999999

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=100.00  E-value=6.7e-38  Score=305.18  Aligned_cols=225  Identities=23%  Similarity=0.374  Sum_probs=190.2

Q ss_pred             CCCHHHHHHhcCC-------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCC-CCccCCCCccccccCCCCCC-cEE
Q 019521          102 QMPIDWLVQLVPP-------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPY-KRKRTGLCSVWLAGLDPQQG-IYI  169 (340)
Q Consensus       102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~-~~~~~G~~S~~L~~l~~~~G-~~v  169 (340)
                      ..||||+...+|.       ..+|+|||+|+|..   +++.++|+|+++.|.++. ++.+.|.||+||+++++  | +.|
T Consensus       156 ~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~--G~d~v  233 (402)
T 2b5o_A          156 YLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPV--GTDDV  233 (402)
T ss_dssp             CCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCT--TCCCE
T ss_pred             cCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCC--CCceE
Confidence            4789998877764       46899999999853   258999999988776532 33468999999999999  9 999


Q ss_pred             EEEeecCCC-CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHhHhcCC-
Q 019521          170 PAWFQKGSL-PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-  244 (340)
Q Consensus       170 ~v~~~~g~F-~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-  244 (340)
                      .+.+|.|.| .++ +..+|+||||+|||||||++|++++.......  ..++++||||||+.+|++|.+||+++.+.++ 
T Consensus       234 ~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~  313 (402)
T 2b5o_A          234 KITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPD  313 (402)
T ss_dssp             EEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTT
T ss_pred             EEEcccCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCC
Confidence            999999976 456 56789999999999999999999987654211  1268999999999999999999999987644 


Q ss_pred             CccccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHH
Q 019521          245 VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRD  319 (340)
Q Consensus       245 ~l~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~  319 (340)
                      ++      ++++++||+++    .++||++.+.+..+.+++++. .++.||+|||+ +|+++|.++|.+++.+.+.    
T Consensus       314 ~~------~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~~~l~~~~~~vyvCGP~-~M~~~v~~~L~~~g~~~g~----  382 (402)
T 2b5o_A          314 NF------RLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLK-GMQPPIDETFTAEAEKRGL----  382 (402)
T ss_dssp             TE------EEEEEETTTCBCTTSCBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECG-GGHHHHHHHHHHHHHHTTC----
T ss_pred             cE------EEEEEECCCCcccCCCccchHHHHHHhHHHHHHHhccCCcEEEEECCH-HHHHHHHHHHHHHHHHcCc----
Confidence            68      89999999753    478999999998888888774 48899999998 9999999999999988753    


Q ss_pred             HHHHHHHHHHHCCCEEEeec
Q 019521          320 SAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       320 ~a~~~~~~l~~~~R~~~d~w  339 (340)
                      .+++++++|+++|||++|+|
T Consensus       383 ~~~~~~~~m~~~~Ry~~e~~  402 (402)
T 2b5o_A          383 NWEEMRRSMKKEHRWHVEVY  402 (402)
T ss_dssp             CHHHHHHHHHHTTCEEEEEC
T ss_pred             hHHHHHHHHHHCCCEEEecC
Confidence            47889999999999999999

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=100.00  E-value=1.2e-36  Score=286.61  Aligned_cols=224  Identities=20%  Similarity=0.304  Sum_probs=181.5

Q ss_pred             CCCHHHHHHhcCC--------------CCcceeecCCCCCC---CCCeEEEEEEEEEecCCCCCc-cCCCCccccccCCC
Q 019521          102 QMPIDWLVQLVPP--------------LKTRAFSISSSPLA---HPNQVHLTVSVVSWTTPYKRK-RTGLCSVWLAGLDP  163 (340)
Q Consensus       102 ~~p~~~l~~~lp~--------------~~pR~YSIaS~p~~---~~~~v~l~V~~v~~~~~~~~~-~~G~~S~~L~~l~~  163 (340)
                      ..|||++...+|.              +.+|+|||+|+|..   +++.++|+|+++.|.++.++. +.|.+|+||.++++
T Consensus        64 ~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~  143 (314)
T 2rc5_A           64 YVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKP  143 (314)
T ss_dssp             CCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCT
T ss_pred             ccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCC
Confidence            3689987776664              46799999999852   368999999987766544433 57999999999999


Q ss_pred             CCCcEEEEEeecCCCCC-CC--CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhH
Q 019521          164 QQGIYIPAWFQKGSLPR-PP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHS  240 (340)
Q Consensus       164 ~~G~~v~v~~~~g~F~l-~~--~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~  240 (340)
                        |+.|.+.+|.|.|.+ +.  ..+|+||||+|||||||++|++++.........++++||||+|+.+|++|.+||+++.
T Consensus       144 --Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~  221 (314)
T 2rc5_A          144 --GDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIKFTGNITLVYGAPYSDELVMMDYLKGLE  221 (314)
T ss_dssp             --TCEEEEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCSSCBCSCEEEEEEESSGGGSCSHHHHHHHH
T ss_pred             --cCEEEEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcccCCCCcEEEEEEeCCHHHHhHHHHHHHHH
Confidence              999999999998754 43  4789999999999999999999988653211126899999999999999999999998


Q ss_pred             hcCCCccccCCCcEEEEEecCCC-----CccchhhhHHHhHHHHHHhhcCCCEEEEe-CCCCccHHHHHHHHHHHHHHhC
Q 019521          241 LNDGVFSEAKGGGFYVAFSRKQP-----QKVYVQHKMLEQSQRIWNLLLSKASIYVA-GSATKMPSDVWSTFEEIVSKEG  314 (340)
Q Consensus       241 ~~~g~l~~~~~~~~~~a~Sr~~~-----~~~yVqd~l~~~~~~l~~~l~~~~~iyvC-G~~~~M~~~v~~~L~~i~~~~~  314 (340)
                      +.++++      ++++++||+..     .++||++.+.+..+.+++.+.+...+|+| ||+ +|+++|++.|.++..  .
T Consensus       222 ~~~~~~------~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~yvCGGp~-~m~~~v~~~L~~~g~--~  292 (314)
T 2rc5_A          222 SKHKNF------KLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRFYICGGPK-GMEKGVIEEIQKISG--N  292 (314)
T ss_dssp             HHHSSE------EEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEEEEEESST-TTHHHHHHHHHHHHT--C
T ss_pred             HhCCcE------EEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeEEEeCCcH-HHHHHHHHHHHHHHh--c
Confidence            754678      89999999743     36899999998777777666433445999 998 999999999999765  2


Q ss_pred             CCCHHHHHHHHHHHHHCCCEEEeec
Q 019521          315 EASRDSAANWLKALQRAGRYHVEAW  339 (340)
Q Consensus       315 ~~~~~~a~~~~~~l~~~~R~~~d~w  339 (340)
                      +   ..++.|+.+|+++|||++|+|
T Consensus       293 ~---i~~e~f~~~l~~~gr~~~e~~  314 (314)
T 2rc5_A          293 T---GTYEEFKHHLEGAHQLFVETY  314 (314)
T ss_dssp             C---SCHHHHHHHHHHTTCEEEEEC
T ss_pred             c---chHHHHHHHHHHCCCEEEecC
Confidence            3   346889999999999999999

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=100.00  E-value=4.4e-34  Score=269.83  Aligned_cols=200  Identities=22%  Similarity=0.327  Sum_probs=161.6

Q ss_pred             CCcceeecCCCCCCCCCeEEEEEEEEEecCC---CCCccCCCCccccccCCCCCCcEEEEEeecCCCCCC-C---CCCCe
Q 019521          115 LKTRAFSISSSPLAHPNQVHLTVSVVSWTTP---YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRP-P---PSVPL  187 (340)
Q Consensus       115 ~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~---~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~-~---~~~pi  187 (340)
                      ..+|+|||+|+|..  +.++|+|+++.|.+.   .++.+.|.||+||.++++  |+.|.+.+|.|.|.++ +   ..+|+
T Consensus        98 ~~~R~ySIaS~p~~--~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~f~l~~~~~~~~~~v  173 (316)
T 3jqq_A           98 RCARLYSISSSNNM--ENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKI--NDDIYLTGAHGYFNLPNDAIQKNTNF  173 (316)
T ss_dssp             CCCEEEEBCSCTTS--SSEEEEEECCBC---------CCBCHHHHHHHTCCT--TCEEEEEEEECCCCCCTTHHHHTCCE
T ss_pred             ccceeeecccCCCC--CeEEEEEEEEEecccccccCcCCCCchhHHHhhCCC--CCEEEEEecCCceEcCCcccCCCCcE
Confidence            47999999999964  789999998877642   234578999999999999  9999999999999998 4   37899


Q ss_pred             EEEeCCcchhhHHHHHHHHHHhcCC-------CCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-CccccCCCcEEEEEe
Q 019521          188 ILIGPGTGCAPFRGFVEERAIQSSS-------GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VFSEAKGGGFYVAFS  259 (340)
Q Consensus       188 i~Ia~GtGIAPf~s~l~~~~~~~~~-------~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l~~~~~~~~~~a~S  259 (340)
                      ||||+|||||||+||++++......       ...++++||||||+.+|++|.+||+++.+.++ ++      ++++++|
T Consensus       174 vlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~------~~~~~~s  247 (316)
T 3jqq_A          174 IFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYPNNI------NIHYVFS  247 (316)
T ss_dssp             EEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHHCTTTE------EEEEEEG
T ss_pred             EEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHhCCCcE------EEEEEEC
Confidence            9999999999999999999875310       02378999999999999999999999987644 78      8999999


Q ss_pred             cCCC---CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEE
Q 019521          260 RKQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH  335 (340)
Q Consensus       260 r~~~---~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~  335 (340)
                      |++.   .++||++.+.+..+.+++++. +++.||+|||+ .|.+++++.|.+.    ++++.          ...+|++
T Consensus       248 ~~~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~-~m~~~v~~~l~~~----G~~~~----------v~~~rih  312 (316)
T 3jqq_A          248 YKQNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKK-SIRYKVMDILKSH----DQFDE----------KKKKRVH  312 (316)
T ss_dssp             GGCC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECS-THHHHHHHHHHC--------CH----------HHHTTEE
T ss_pred             CCcccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCH-HHHHHHHHHHHHc----CCCcc----------cccccEE
Confidence            9853   579999999998888888775 48999999998 9998887766553    33333          2357899


Q ss_pred             Eeec
Q 019521          336 VEAW  339 (340)
Q Consensus       336 ~d~w  339 (340)
                      .|+|
T Consensus       313 ~E~f  316 (316)
T 3jqq_A          313 VEVY  316 (316)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9876

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=99.96  E-value=2.7e-29  Score=228.78  Aligned_cols=182  Identities=15%  Similarity=0.168  Sum_probs=151.7

Q ss_pred             CCCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|. ..+|+|||+|.|.. .+.++|+|+         +...|.+|+||. ++++  |+.|.+.+|.|.|.
T Consensus        44 ~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~i~vk---------~~~~G~~s~~l~~~l~~--Gd~v~v~gP~G~~~  111 (250)
T 1tvc_A           44 FEPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLIR---------VLPEGRFSDYLRNDARV--GQVLSVKGPLGVFG  111 (250)
T ss_dssp             CCSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEEC---------CCTTSSSHHHHHHHSSS--SSEEEEEEEECCCS
T ss_pred             cCCCcEEEEEeCCCccccccccCCCCCC-CCeEEEEEE---------ECCCCCchHHHHhcCCC--CCEEEEEcCccccc
Confidence            3689998888886 67899999999853 588999983         445799999995 8999  99999999999999


Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAF  258 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~  258 (340)
                      ++ +..++++|||+||||||+++|++++......   .+++|+||+|+.+|++|.+||+++.+.++++      +++.++
T Consensus       112 ~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~  182 (250)
T 1tvc_A          112 LKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAP---NETRIYFGVNTEPELFYIDELKSLERSMRNL------TVKACV  182 (250)
T ss_dssp             CCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTCC---SCEEEEEECSSSTTCCCHHHHHHHHHHSSSC------EEEECC
T ss_pred             cCccCCceEEEEEeccCHHHHHHHHHHHHhcCCC---ceEEEEEEeCCHHHhhhHHHHHHHHHhCCCe------EEEEEe
Confidence            87 5558999999999999999999999876543   7899999999999999999999998755778      899899


Q ss_pred             ecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          259 SRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       259 Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      |++++    .+++|++.+.+...   +. ..+..+|+|||+ .|++++++.|.+.
T Consensus       183 s~~~~~~~g~~g~v~~~l~~~~~---~~-~~~~~vyvCGp~-~m~~~v~~~l~~~  232 (250)
T 1tvc_A          183 WHPSGDWEGEQGSPIDALREDLE---SS-DANPDIYLCGPP-GMIDAACELVRSR  232 (250)
T ss_dssp             SSCSSCCSSSSSSSSHHHHHHHH---HS-SSSSEEEEESSH-HHHHHHHHHHHHH
T ss_pred             ccCCCCcCCccceehHHHHhhhh---cc-cCCcEEEEeCCH-HHHHHHHHHHHHc
Confidence            98532    46789887764321   11 247899999998 9999998887653

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=99.96  E-value=3.1e-29  Score=233.01  Aligned_cols=181  Identities=19%  Similarity=0.334  Sum_probs=142.1

Q ss_pred             CCcceeecCCCCCCCCCeEEEEEEEEEec--CC----CCCccCCCCccccccCCCCCCcEEEEEeecCCCCCCCCCCCeE
Q 019521          115 LKTRAFSISSSPLAHPNQVHLTVSVVSWT--TP----YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLPRPPPSVPLI  188 (340)
Q Consensus       115 ~~pR~YSIaS~p~~~~~~v~l~V~~v~~~--~~----~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~l~~~~~pii  188 (340)
                      ..+|+|||+|+|.. .+.++|+|+++...  +.    .++...|.+|+||.++++  |+.|.+.+|.|.|.+++..+++|
T Consensus        84 ~~~R~ySi~s~~~~-~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~--Gd~v~v~gP~G~f~~~~~~~~~v  160 (290)
T 2r6h_A           84 ETVRAYSMANYPAE-GNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKP--GDKVMMSGPYGDFHIQDTDAEML  160 (290)
T ss_dssp             CEEEEEECCSCTTC-CSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCT--TCEEEEEEEECCCCCCSSSCEEE
T ss_pred             CcceeeeccCCCCC-CCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCC--CCEEEEEecccCCcCCCCCCeEE
Confidence            46899999999853 57899999754211  00    012457999999999999  99999999999999876668999


Q ss_pred             EEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCC-----
Q 019521          189 LIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQP-----  263 (340)
Q Consensus       189 ~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~-----  263 (340)
                      |||+|||||||++|++++......  ..+++||||+|+.+|++|.+||+++.+.++++      +++.++||+..     
T Consensus       161 liagGtGitP~~s~l~~~~~~~~~--~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~~~~~~~~  232 (290)
T 2r6h_A          161 YIGGGAGMAPLRAQILHLFRTLKT--GRKVSYWYGARSKNEIFYEEDFREIEREFPNF------KFHIALSDPQPEDNWT  232 (290)
T ss_dssp             EEEEGGGHHHHHHHHHHHHHTSCC--CSCEEEEEEESSGGGCCSHHHHHHHHHHCTTE------EEEEEESSCCGGGCCC
T ss_pred             EEECccCHHHHHHHHHHHHHhcCC--CCcEEEEEEcCCHHHHHHHHHHHHHHHhCCCe------EEEEEEccCCcccCCC
Confidence            999999999999999988765321  27899999999999999999999998765778      89999998642     


Q ss_pred             -CccchhhhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          264 -QKVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       264 -~~~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                       .+++|++.+.+.  .+.+.. .+++.+|+|||+ +|+++|++.|.+.
T Consensus       233 g~~g~v~~~~~~~--~l~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~  277 (290)
T 2r6h_A          233 GYVGFIHQVIYDN--YLKDHDAPEDIEYYMCGPG-PMANAVKGMLENL  277 (290)
T ss_dssp             SCBSCHHHHHHHH--TTTTCSCGGGEEEEEECCH-HHHHHHHHHHHHH
T ss_pred             CeeEecCHHHHHh--HHhhccCcCCcEEEEECCH-HHHHHHHHHHHHc
Confidence             367888776432  111111 126789999998 9999998888654

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=99.96  E-value=4.8e-29  Score=224.41  Aligned_cols=177  Identities=18%  Similarity=0.203  Sum_probs=144.9

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccc-cccCCCCCCcEEEEEeecCCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVW-LAGLDPQQGIYIPAWFQKGSLPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~-L~~l~~~~G~~v~v~~~~g~F~l  180 (340)
                      ..||||+...+|...+|+|||+|+|.. ++.++|+|++         ...|.+|++ +.++++  |+.|.+.+|.|.|.+
T Consensus        30 ~~pGq~v~l~~~~~~~R~ySi~s~~~~-~~~l~l~i~~---------~~~G~~s~~~~~~l~~--Gd~v~v~gP~G~~~~   97 (232)
T 1qfj_A           30 FRAGQYLMVVMDERDKRPFSMASTPDE-KGFIELHIGA---------SEINLYAKAVMDRILK--DHQIVVDIPHGEAWL   97 (232)
T ss_dssp             CCTTCEEEEESSSSCEEEEECCSCTTS-TTCEEEEEC---------------CCHHHHHHHHH--HSEEEEEEEECSCCC
T ss_pred             cCCCCEEEEECCCCceeeeecCCCCCC-CCcEEEEEEE---------ccCCchhHHHHHhCCC--CCEEEEeCCccceEe
Confidence            368999988888888999999999853 5789999854         345767775 568999  999999999999998


Q ss_pred             C-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          181 P-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       181 ~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      + +..++++|||+||||||++++++++......   .+++|+||+|+.+|++|.+||+++.+.++++      +++.++|
T Consensus        98 ~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~~s  168 (232)
T 1qfj_A           98 RDDEERPMILIAGGTGFSYARSILLTALARNPN---RDITIYWGGREEQHLYDLCELEALSLKHPGL------QVVPVVE  168 (232)
T ss_dssp             CSCSSSCEEEEEETTCHHHHHHHHHHHHHHCTT---CCEEEEEEESSGGGCTTHHHHHHHHHHCTTE------EEEEEES
T ss_pred             CCCCCCcEEEEEecccHhHHHHHHHHHHhcCCC---CcEEEEEeeCCHHHhhhHHHHHHHHHHCCCe------EEEEEEc
Confidence            7 5578999999999999999999999886544   7899999999999999999999998765778      8999999


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHH
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTF  306 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L  306 (340)
                      ++++    .++++++.+.+.      +.. .+..+|+|||+ +|++++++.|
T Consensus       169 ~~~~~~~g~~g~v~~~~~~~------~~~~~~~~vyvCGp~-~m~~~v~~~l  213 (232)
T 1qfj_A          169 QPEAGWRGRTGTVLTAVLQD------HGTLAEHDIYIAGRF-EMAKIARDLF  213 (232)
T ss_dssp             SCCTTCCSEESCHHHHHHHH------CSCCTTCEEEEESCH-HHHHHHHHHH
T ss_pred             CCCCCcCCceeeHHHHHHHh------cCCccccEEEEECCH-HHHHHHHHHH
Confidence            8654    357888776543      111 37899999998 9999988877

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=99.96  E-value=3.6e-29  Score=227.42  Aligned_cols=185  Identities=16%  Similarity=0.168  Sum_probs=149.9

Q ss_pred             CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEE-eecCC
Q 019521          102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~  177 (340)
                      ..||||+...+|.   ..+|+|||+|+|..  +.++|+|+.         .+.|.+|+||.++++  |+.|.+. +|.|.
T Consensus        31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~l~~~v~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~   97 (248)
T 1fdr_A           31 FTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLVT---------VPDGKLSPRLAALKP--GDEVQVVSEAAGF   97 (248)
T ss_dssp             CCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEEC---------CTTCSSHHHHHTCCT--TCEEEEESSCBCC
T ss_pred             cCCCCcEEEEccCCCCeeeeeecccCCCCC--CcEEEEEEE---------eCCCchhhHHHhCCC--cCEEEEecCCcce
Confidence            3689998888873   46899999999853  789999853         357999999999999  9999999 99999


Q ss_pred             CCCC-CC-CCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcC-CCccccCCCcE
Q 019521          178 LPRP-PP-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGGGF  254 (340)
Q Consensus       178 F~l~-~~-~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~-g~l~~~~~~~~  254 (340)
                      |.++ .. .++++|||+|||||||+++++++......   .+++|+||+|+.+|++|.+||+++.+.+ +++      ++
T Consensus        98 f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~------~~  168 (248)
T 1fdr_A           98 FVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRF---KNLVLVHAARYAADLSYLPLMQELEKRYEGKL------RI  168 (248)
T ss_dssp             CSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCTTC---SEEEEEEEESSGGGCTTHHHHHHHHHHTTTSE------EE
T ss_pred             eEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhCCC---CcEEEEEEcCCHHHhhHHHHHHHHHHhCcCcE------EE
Confidence            9987 43 68999999999999999999987543322   7899999999999999999999998753 478      88


Q ss_pred             EEEEecCCC---CccchhhhHHHhH-HHHHHh-h-cCCCEEEEeCCCCccHHHHHHHH-HHH
Q 019521          255 YVAFSRKQP---QKVYVQHKMLEQS-QRIWNL-L-LSKASIYVAGSATKMPSDVWSTF-EEI  309 (340)
Q Consensus       255 ~~a~Sr~~~---~~~yVqd~l~~~~-~~l~~~-l-~~~~~iyvCG~~~~M~~~v~~~L-~~i  309 (340)
                      +.++|+++.   .+++|++.+.+.. +..... . .++..+|+|||+ +|++++++.| .+.
T Consensus       169 ~~~~s~~~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~CGp~-~m~~~v~~~l~~~~  229 (248)
T 1fdr_A          169 QTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNP-QMVRDTQQLLKETR  229 (248)
T ss_dssp             EEEESSSCCTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECH-HHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCcceeeChHHHhhhHHHhhccCCCccCCEEEEeCCH-HHHHHHHHHHHHHc
Confidence            999998764   3688998876542 222221 2 237899999998 9999998888 554

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.96  E-value=7.8e-29  Score=235.60  Aligned_cols=178  Identities=21%  Similarity=0.279  Sum_probs=150.9

Q ss_pred             CCHHHHHHhcCC-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCCC
Q 019521          103 MPIDWLVQLVPP-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  180 (340)
Q Consensus       103 ~p~~~l~~~lp~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l  180 (340)
                      .||||+...+|. ..+|+|||+|+|.  .+.++|+|+         +...|.+|+||. ++++  |+.|.+.+|.|.|.+
T Consensus       140 ~pGQ~v~l~~~~~~~~R~ySi~s~~~--~~~l~~~vk---------~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G~f~~  206 (338)
T 1krh_A          140 LAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVR---------NVPQGKMSEYLSVQAKA--GDKMSFTGPFGSFYL  206 (338)
T ss_dssp             CTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEE---------CCTTCHHHHHHHTTCCT--TCEEEEEEEECSCSC
T ss_pred             CCCCeEEEEcCCCCccccccccCCCC--CCeEEEEEE---------EcCCCCchhhHhhccCC--CCEEEEECCccceEe
Confidence            689998888887 5789999999985  589999985         345799999995 8999  999999999999998


Q ss_pred             CCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEec
Q 019521          181 PPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSR  260 (340)
Q Consensus       181 ~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr  260 (340)
                      +...++++|||+|||||||+++++++......   .+++|+||+|+.+|++|.+||+++.+.++++      +++.++|+
T Consensus       207 ~~~~~~~vliagGtGiaP~~s~l~~l~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~  277 (338)
T 1krh_A          207 RDVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE---HPVRLVFGVTQDCDLVALEQLDALQQKLPWF------EYRTVVAH  277 (338)
T ss_dssp             CCCSSCEEEEEEGGGHHHHHHHHHHHHHHCCS---SCEEEEEEESSGGGCCCHHHHHHHHHHCTTE------EEEEEETT
T ss_pred             CCCCceEEEEEccccHhHHHHHHHHHHHcCCC---CeEEEEEEeCCHHHhhhHHHHHHHHHhCCCe------EEEEEEec
Confidence            74348999999999999999999999887544   7899999999999999999999998765778      89999998


Q ss_pred             CCC---CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          261 KQP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       261 ~~~---~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++.   .+++|++.+.+.      .+. .+..+|+|||+ +|++++++.|.+.
T Consensus       278 ~~~~~~~~g~v~~~l~~~------~~~~~~~~vy~CGp~-~m~~~v~~~l~~~  323 (338)
T 1krh_A          278 AESQHERKGYVTGHIEYD------WLNGGEVDVYLCGPV-PMVEAVRSWLDTQ  323 (338)
T ss_dssp             CCSSSSEESCSGGGCCGG------GGGGGCSEEEEEEEH-HHHHHHHHHHHHH
T ss_pred             CCCCCCccCccCHHHHHh------hcccCCcEEEEECCH-HHHHHHHHHHHHc
Confidence            754   367898877632      122 36789999998 9999998888653

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=99.95  E-value=7.6e-29  Score=224.64  Aligned_cols=184  Identities=18%  Similarity=0.196  Sum_probs=147.2

Q ss_pred             CCCHHHHHHhcC--C-CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521          102 QMPIDWLVQLVP--P-LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp--~-~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F  178 (340)
                      ..||||+...+|  . ...|+|||+|.+. ..+.++|+|+         +...|.+|+||.++++  |+.|.+.+|.|.|
T Consensus        42 ~~pGq~v~l~~~~~g~~~~R~ysi~s~~~-~~~~~~l~vk---------~~~~G~~S~~l~~l~~--Gd~v~v~gP~G~f  109 (243)
T 2eix_A           42 LPIGQHMSVKATVDGKEIYRPYTPVSSDD-EKGYFDLIIK---------VYEKGQMSQYIDHLNP--GDFLQVRGPKGQF  109 (243)
T ss_dssp             CCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEE---------CCTTCHHHHHHHTCCT--TCEEEEEEEECSC
T ss_pred             cCCceEEEEEEeeCCCEEEeeeeecCCCC-CCCEEEEEEE---------EcCCCCcchHhhcCCC--CCEEEEECCeEEE
Confidence            368999887776  2 3689999999985 3588999985         3357999999999999  9999999999999


Q ss_pred             CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      .++ +..++++|||+|||||||+++++++......  ..+++|+||+|+.+|++|.+||+++.+.++++      +++.+
T Consensus       110 ~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~--~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~~~  181 (243)
T 2eix_A          110 DYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKE--KTIINLIFANVNEDDILLRTELDDMAKKYSNF------KVYYV  181 (243)
T ss_dssp             CCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTC--CCEEEEEEEEEEGGGCTTHHHHHHHHHHCTTE------EEEEE
T ss_pred             EeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCC--CcEEEEEEEcCCHHHhhHHHHHHHHHHHCCCe------EEEEE
Confidence            988 5568999999999999999999998764211  27899999999999999999999998765678      89999


Q ss_pred             EecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          258 FSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       258 ~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      +|++.+    .+++|++.+.+.   +......+..+|+|||+ +|++++++.|.+.
T Consensus       182 ~s~~~~~~~g~~g~v~~~~l~~---~~~~~~~~~~vy~CGp~-~m~~~v~~~l~~~  233 (243)
T 2eix_A          182 LNNPPAGWTGGVGFVSADMIKQ---HFSPPSSDIKVMMCGPP-MMNKAMQGHLETL  233 (243)
T ss_dssp             EEECCTTCCSEESSCCHHHHHH---HSCCTTSSEEEEEESSH-HHHHHHHHHHHHH
T ss_pred             eCCCCccccCcCCccCHHHHHH---hcCCCCCCeEEEEECCH-HHHHHHHHHHHHc
Confidence            998543    357887643221   11111135689999998 9999998888654

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=99.95  E-value=1.2e-28  Score=223.19  Aligned_cols=181  Identities=17%  Similarity=0.264  Sum_probs=146.3

Q ss_pred             CCCHHHHHHhcCCC-----CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeec
Q 019521          102 QMPIDWLVQLVPPL-----KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK  175 (340)
Q Consensus       102 ~~p~~~l~~~lp~~-----~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~  175 (340)
                      ..||||+...+|.-     .+|+|||+|+|.  .+.++|+|+.+..    .+...|.+|+||. .+++  |+.|.+.+|.
T Consensus        34 ~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~--~~~~~i~vk~~~~----~~~~~G~~S~~l~~~l~~--G~~v~v~gP~  105 (243)
T 4eh1_A           34 YQPGQYIGIEVTPEGSDYREIRQYSLSHASN--GREYRISVKREGV----GSDNPGLVSHYLHNNVKV--GDSVKLYAPA  105 (243)
T ss_dssp             CCTTCEEEEEECCSSCSSCEEEEEEBCSCCC--SSCEEEEEECTTT----TSSSCCHHHHHHHHHCCT--TCEEEEEEEE
T ss_pred             cCCCCEEEEEEecCCCccccceeeEeccCCC--CCeEEEEEEEeec----CCCCCCeehhHHHhcCCC--CCEEEEEccC
Confidence            36899998888742     469999999985  3789999853211    1126799999997 6999  9999999999


Q ss_pred             CCCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEE
Q 019521          176 GSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  255 (340)
Q Consensus       176 g~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~  255 (340)
                      |.|.+++..++++|||+|||||||++|++++......   . ++|+||+|+.+|++|.+||+++.+.+ ++      +++
T Consensus       106 G~~~~~~~~~~~vliagGtGitp~~~~l~~l~~~~~~---~-v~l~~~~r~~~~~~~~~el~~l~~~~-~~------~~~  174 (243)
T 4eh1_A          106 GDFFYVERERPVVLISAGVGATPMQAILHTLAKQNKS---G-VTYLYACNSAKEHTFAQETAQLIAQQ-GW------MQQ  174 (243)
T ss_dssp             CSCCCCCCSSCEEEEEEGGGHHHHHHHHHHHHHTTCC---S-EEEEEEESSGGGCTTHHHHHHHHHHH-TC------EEE
T ss_pred             cccCcCCCCCCEEEEEccccHHHHHHHHHHHHHcCCC---e-EEEEEEeCChhhhhHHHHHHHHHHhC-Ce------EEE
Confidence            9999886678999999999999999999999886543   4 99999999999999999999998873 78      899


Q ss_pred             EEEecCCC---CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          256 VAFSRKQP---QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       256 ~a~Sr~~~---~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      .++|++..   ..+++++.+. .      +-..+..+|+|||+ .|++++++.|.+.
T Consensus       175 ~~~s~~~~~~~~~g~~~~~~~-~------~~~~~~~vyvCGp~-~m~~~v~~~l~~~  223 (243)
T 4eh1_A          175 VWYRDESADDVLQGEMQLAEL-I------LPIEDGDFYLCGPI-GFMQYVVKQLLAL  223 (243)
T ss_dssp             EEESSCCCTTCEESSCCCTTS-C------CCTTTCEEEEEECH-HHHHHHHHHHHHH
T ss_pred             EEEccCCCcccccCCccHHHe-e------ccCCCcEEEEECCH-HHHHHHHHHHHHc
Confidence            99988655   2456655433 1      11247899999998 9999998888764

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=99.95  E-value=6.5e-29  Score=229.24  Aligned_cols=192  Identities=17%  Similarity=0.156  Sum_probs=150.1

Q ss_pred             CCHHHHHHhcC---CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCC
Q 019521          103 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       103 ~p~~~l~~~lp---~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~  179 (340)
                      .||||+...+|   ...+|+|||+|+|. +++.++|+|+++.+.+..+....|.+|+||.++++  |+.|.+.+|.|.|.
T Consensus        48 ~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~--Gd~v~v~gP~G~~~  124 (275)
T 1umk_A           48 PVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQI--GDTIEFRGPSGLLV  124 (275)
T ss_dssp             CTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred             CCCcEEEEEEeeCCcEEEeccccCCccC-CCCeEEEEEEEeccCcccccCCCChhHHHHhcCCC--CCEEEEEcCccceE
Confidence            68999877764   24789999999985 46899999987766554444467999999999999  99999999999875


Q ss_pred             C--------C-C--------CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhc
Q 019521          180 R--------P-P--------PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN  242 (340)
Q Consensus       180 l--------~-~--------~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~  242 (340)
                      +        + +        ..++++|||+|||||||++|++++.....  ...+++|+||+|+.+|++|.+||+++.+.
T Consensus       125 ~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~--~~~~v~l~~~~r~~~d~~~~~el~~l~~~  202 (275)
T 1umk_A          125 YQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPD--DHTVCHLLFANQTEKDILLRPELEELRNK  202 (275)
T ss_dssp             EEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTT--CCCEEEEEEEESSGGGCTTHHHHHHHHHH
T ss_pred             ecCCccccccccccccccccCCceEEEEecCccHhHHHHHHHHHHhCCC--CCcEEEEEEEcCCHHHhhHHHHHHHHHHh
Confidence            3        2 1        35799999999999999999999876421  12789999999999999999999999875


Q ss_pred             CC-CccccCCCcEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHH-HHHHHHHHH
Q 019521          243 DG-VFSEAKGGGFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPS-DVWSTFEEI  309 (340)
Q Consensus       243 ~g-~l~~~~~~~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~-~v~~~L~~i  309 (340)
                      ++ ++      +++.++|+++.    .+++|++.+.+.   ......+++.+|+|||+ +|++ ++++.|.+.
T Consensus       203 ~~~~~------~~~~~~s~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp~-~m~~~~v~~~L~~~  265 (275)
T 1umk_A          203 HSARF------KLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGPP-PMIQYACLPNLDHV  265 (275)
T ss_dssp             CTTTE------EEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESCH-HHHHHTTHHHHHHH
T ss_pred             CcCcE------EEEEEEcCCCccccCccCccCHHHHHH---hcCCCCCCeEEEEECCH-HHHHHHHHHHHHHc
Confidence            44 57      88899998653    267888754322   11111237899999998 9998 888888754

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=99.95  E-value=3.7e-29  Score=230.53  Aligned_cols=201  Identities=18%  Similarity=0.245  Sum_probs=154.9

Q ss_pred             CCHHHHHHhcC---CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEE-eecCCC
Q 019521          103 MPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGSL  178 (340)
Q Consensus       103 ~p~~~l~~~lp---~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~F  178 (340)
                      .||||+...+|   ...+|+|||+|+|.  .+.++|+|+         +...|.+|+||.++++  |+.|.+. +|.|.|
T Consensus        48 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~~~~~v~---------~~~~G~~s~~l~~l~~--Gd~v~v~~gP~G~~  114 (271)
T 4fk8_A           48 NNGEFTMVGLEVDGKPLTRAYSIVSPNY--EEHLEFFSI---------KVQNGPLTSRLQHLKV--GDPVLIGKKPTGTL  114 (271)
T ss_dssp             CTTCEEEEEEEETTEEEEEEEECCSCTT--SSSEEEEEE---------CCTTCTTHHHHTTCCT--TCEEEEESCCBCSC
T ss_pred             CCCCEEEEEccCCCceeeeeEeccCCCC--CCcEEEEEE---------EECCCchhhHHhcCCC--CCEEEEecCCCcce
Confidence            68999988887   23589999999985  367898874         3357999999999999  9999999 999999


Q ss_pred             CCC--CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC--------Cccc
Q 019521          179 PRP--PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG--------VFSE  248 (340)
Q Consensus       179 ~l~--~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g--------~l~~  248 (340)
                      .++  ...++++|||+||||||++++++++......   .+++|+||+|+.+|++|.+||+++.+.+.        ++  
T Consensus       115 ~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~--  189 (271)
T 4fk8_A          115 VADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERF---DKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKL--  189 (271)
T ss_dssp             CGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHHC---SEEEEEECCCSHHHHHHHHHHHTCCTTCTTHHHHHHHHE--
T ss_pred             ecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCCC---CCEEEEEecCCHHHHhHHHHHHHHHHhCccccccccceE--
Confidence            887  3678999999999999999999998765544   78999999999999999999999876533        46  


Q ss_pred             cCCCcEEEEEecCCC-CccchhhhHHHhHHHHHHh----h-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHH
Q 019521          249 AKGGGFYVAFSRKQP-QKVYVQHKMLEQSQRIWNL----L-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAA  322 (340)
Q Consensus       249 ~~~~~~~~a~Sr~~~-~~~yVqd~l~~~~~~l~~~----l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~  322 (340)
                          +++.++|+++. .++++++.+.+. ..+.++    + .++..+|+|||+ .|++++++.|.+.......       
T Consensus       190 ----~~~~~~s~~~~~~~G~v~~~~~~~-~l~~~~~~~~~~~~~~~v~vCGp~-~m~~~v~~~l~~~gv~~~~-------  256 (271)
T 4fk8_A          190 ----VYYPTVTREEFENEGRITDLIASG-KLFTDLDMPPFSPEQDRVMLCGST-AMLKDTTELLKKAGLVEGK-------  256 (271)
T ss_dssp             ----EEEECC-------CCHHHHHHHHS-HHHHHTTCCCCCTTTEEEEEEECH-HHHHHHHHHHHHTTCCBCB-------
T ss_pred             ----EEEEEecCCccccccccChHHhcc-hhhhhcccccCCCCCCEEEEECCH-HHHHHHHHHHHHcCCchhh-------
Confidence                78888888764 467888877553 111111    1 247899999999 9999999988765443322       


Q ss_pred             HHHHHHHHCCCEEEeec
Q 019521          323 NWLKALQRAGRYHVEAW  339 (340)
Q Consensus       323 ~~~~~l~~~~R~~~d~w  339 (340)
                           +...|+|+.|.|
T Consensus       257 -----i~~~~~~~~E~y  268 (271)
T 4fk8_A          257 -----NSAPGHYVIERA  268 (271)
T ss_dssp             -----TTBCBSEEEEES
T ss_pred             -----cCCCCcEEEEEe
Confidence                 233678888875

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=99.95  E-value=4.7e-28  Score=234.96  Aligned_cols=178  Identities=16%  Similarity=0.226  Sum_probs=145.2

Q ss_pred             CCCHHHHHHhcCC-----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCcccccc-CCCCCCcEEEEEeec
Q 019521          102 QMPIDWLVQLVPP-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAG-LDPQQGIYIPAWFQK  175 (340)
Q Consensus       102 ~~p~~~l~~~lp~-----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~-l~~~~G~~v~v~~~~  175 (340)
                      ..||||+...+|+     ..+|+|||+|+|.  .+.++|+|+.         ...|.+|+||.+ +++  ||.|.+.+|.
T Consensus       183 ~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~---------~~~G~~S~~L~~~l~~--Gd~v~v~gP~  249 (396)
T 1gvh_A          183 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVKR---------EEGGQVSNWLHNHANV--GDVVKLVAPA  249 (396)
T ss_dssp             CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEEC---------CTTCHHHHHHHHTCCT--TCEEEEEEEE
T ss_pred             CCCCCeEEEEecCCCCccceeecceeccCCC--CCeEEEEEEE---------cCCCcchHHHHhcCCC--CCEEEEEcCC
Confidence            3689998887763     3589999999985  4789999853         346999999996 999  9999999999


Q ss_pred             CCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcE
Q 019521          176 GSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGF  254 (340)
Q Consensus       176 g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~  254 (340)
                      |.|.++ +..+|++|||+|||||||++|++++......   .+++|+||+|+.+|++|++||+++.+.++++      ++
T Consensus       250 G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~  320 (396)
T 1gvh_A          250 GDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGHT---AQVNWFHAAENGDVHAFADEVKELGQSLPRF------TA  320 (396)
T ss_dssp             CSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCTTTCCSHHHHHHHHHTSSSE------EE
T ss_pred             cceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhhHHHHHHHHHHCCCe------EE
Confidence            999997 6778999999999999999999999876544   7899999999999999999999998765778      89


Q ss_pred             EEEEecCCC---------CccchhhhHHHhHHHHHHh-hcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          255 YVAFSRKQP---------QKVYVQHKMLEQSQRIWNL-LLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       255 ~~a~Sr~~~---------~~~yVqd~l~~~~~~l~~~-l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                      ++++|+++.         ..++++....+      +. ...+..+|+|||+ +|++++++.|.+
T Consensus       321 ~~~~s~~~~~~~~~~~~~~~G~~~~~~l~------~~~~~~~~~vyvCGp~-~m~~~v~~~L~~  377 (396)
T 1gvh_A          321 HTWYRQPSEADRAKGQFDSEGLMDLSKLE------GAFSDPTMQFYLCGPV-GFMQFTAKQLVD  377 (396)
T ss_dssp             EEEESSCCHHHHHHTCCSEESSCCGGGSS------SCCCCTTCEEEEESCH-HHHHHHHHHHHH
T ss_pred             EEEECCCCccccccCccCccCcCCHHHHh------hccCCCCCEEEEeCCH-HHHHHHHHHHHH
Confidence            999998653         13444432111      11 1127899999998 999999888764

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=99.95  E-value=1.1e-27  Score=232.63  Aligned_cols=182  Identities=16%  Similarity=0.222  Sum_probs=147.3

Q ss_pred             CCCHHHHHHhc--C--C---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEe
Q 019521          102 QMPIDWLVQLV--P--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWF  173 (340)
Q Consensus       102 ~~p~~~l~~~l--p--~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~  173 (340)
                      ..||||+...+  |  +   ..+|+|||+|+|.  ++.++|+|+...-   .+..+.|.+|+||. ++++  ||.|.+.+
T Consensus       184 ~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~--~~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~--Gd~v~v~g  256 (399)
T 4g1v_A          184 ITPGQYITVNTHPIRQENQYDALRHYSLCSAST--KNGLRFAVKMEAA---RENFPAGLVSEYLHKDAKV--GDEIKLSA  256 (399)
T ss_dssp             CCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC--TTCEEEEEECCCC---BTTBCCCHHHHHHHHTCCT--TCEEEEEE
T ss_pred             CCCCCEEEEEEeCCCCCCccceeeeecccCCCC--CCeEEEEEEeccC---CCCCCCCEehhHHHhCCCC--CCEEEEEe
Confidence            35899988875  4  3   3579999999985  4789999854211   01135899999996 8999  99999999


Q ss_pred             ecCCCCCC-C----CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccc
Q 019521          174 QKGSLPRP-P----PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSE  248 (340)
Q Consensus       174 ~~g~F~l~-~----~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~  248 (340)
                      |.|.|.++ +    ..+|++|||+|||||||++|++++......   .+++++||+|+.+|++|.++|+++.+.++++  
T Consensus       257 P~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~--  331 (399)
T 4g1v_A          257 PAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPN---RPIYWIQSSYDEKTQAFKKHVDELLAECANV--  331 (399)
T ss_dssp             EECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCTT---SCEEEEEEESSSTTSTTHHHHHHHHTTCSSE--
T ss_pred             cccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcCCC---CCEEEEEecCCHHHhhhHHHHHHHHHhCCCc--
Confidence            99999998 5    578999999999999999999999887654   7899999999999999999999998766778  


Q ss_pred             cCCCcEEEEEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          249 AKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       249 ~~~~~~~~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                          ++++++|++.   ++++..      .+.+.+.+++.+|+|||+ +|++++++.|.+.
T Consensus       332 ----~~~~~~s~~~---g~~~~~------~l~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~  378 (399)
T 4g1v_A          332 ----DKIIVHTDTE---PLINAA------FLKEKSPAHADVYTCGSL-AFMQAMIGHLKEL  378 (399)
T ss_dssp             ----EEEEEETTTS---CCCCHH------HHHHHSCSSCEEEEEECH-HHHHHHHHHHHHT
T ss_pred             ----EEEEEEeCCC---CcccHH------HHHhhCCCCCEEEEECCH-HHHHHHHHHHHHc
Confidence                8999999864   455432      222234448999999998 9999998888654

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=99.95  E-value=7.2e-28  Score=222.29  Aligned_cols=185  Identities=17%  Similarity=0.210  Sum_probs=148.5

Q ss_pred             CCCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEE-eecC
Q 019521          102 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKG  176 (340)
Q Consensus       102 ~~p~~~l~~~lp~----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g  176 (340)
                      ..||||+...+|.    ..+|+|||+|+|..  +.++|+|+.         .+.|.+|+||.++++  |+.|.+. +|.|
T Consensus        44 ~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~--~~~~l~v~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gP~G  110 (272)
T 2bgi_A           44 FRSGEFVMIGLLDDNGKPIMRAYSIASPAWD--EELEFYSIK---------VPDGPLTSRLQHIKV--GEQIILRPKPVG  110 (272)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEEEECCSCTTC--SEEEEEEEC---------CTTCTTHHHHTTCCT--TCEEEEEEEEEC
T ss_pred             cCCCCEEEEEeccCCCCeeeeeeeeccCCCC--CeEEEEEEE---------ccCCCchhHHHhCCC--CCEEEEeeCCCC
Confidence            3689998888772    36899999999853  789999843         357999999999999  9999999 8999


Q ss_pred             CCCCC-CC-CCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHH-HhHh-----cC--CCc
Q 019521          177 SLPRP-PP-SVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL-SHSL-----ND--GVF  246 (340)
Q Consensus       177 ~F~l~-~~-~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~-~~~~-----~~--g~l  246 (340)
                      .|.++ .. .++++|||+|||||||++|++++......   .+++|+||+|+.+|++|.+||+ ++.+     .+  +++
T Consensus       111 ~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~  187 (272)
T 2bgi_A          111 TLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYEKF---DEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKL  187 (272)
T ss_dssp             SCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGTSC---SEEEEEEEESSSGGGHHHHHHHHHHHHCTTTTTTSTTTE
T ss_pred             cccccccccCCeEEEEeecccHHHHHHHHHHHHhcCCC---CcEEEEEEeCCHHHhhHHHHHHHHHHhcchhhcccCCcE
Confidence            99887 43 68999999999999999999987654333   7899999999999999999999 8876     22  578


Q ss_pred             cccCCCcEEEEEecCCC-CccchhhhHHHhH-HHHHHh--hc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          247 SEAKGGGFYVAFSRKQP-QKVYVQHKMLEQS-QRIWNL--LL-SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       247 ~~~~~~~~~~a~Sr~~~-~~~yVqd~l~~~~-~~l~~~--l~-~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                            +++.++|+++. .+++|++.+.+.. +....+  +. +++.+|+|||+ +|++++++.|.+.
T Consensus       188 ------~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~  248 (272)
T 2bgi_A          188 ------KYYPTTTREEFHHMGRITDNLASGKVFEDLGIAPMNPETDRAMVCGSL-AFNVDVMKVLESY  248 (272)
T ss_dssp             ------EEEEEESSSCCSSBCCHHHHHHSCHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHTT
T ss_pred             ------EEEEEecCCccccCceechHHHhhhHhhhcccccCCCCCcEEEEECCH-HHHHHHHHHHHHc
Confidence                  88889998743 4789998876532 221111  12 47899999998 9999998877653

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=99.94  E-value=4.8e-28  Score=221.37  Aligned_cols=185  Identities=17%  Similarity=0.201  Sum_probs=148.0

Q ss_pred             CCCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEE-eecCC
Q 019521          102 QMPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~  177 (340)
                      ..||||+...+|.   ..+|+|||+|+|..  +.++|+|+.         .+.|.+|+||.++++  |+.|.+. +|.|.
T Consensus        31 ~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~--~~~~~~i~~---------~~~G~~s~~l~~l~~--Gd~v~v~~gp~G~   97 (257)
T 2qdx_A           31 FKTGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSIK---------VPDGPLTSRLQHLKE--GDELMVSRKPTGT   97 (257)
T ss_dssp             CCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEEC---------CTTCTTHHHHTTCCT--TCEEEECSCCBCS
T ss_pred             cCCCCEEEEEecCCCCceeeeeEeecCCCC--CeEEEEEEE---------eCCCcchhHHHhCCC--CCEEEEecCCCCC
Confidence            3689998877763   46899999999853  789998843         357999999999999  9999999 89999


Q ss_pred             CCCC-C-CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHH-HhHh-----cC--CCcc
Q 019521          178 LPRP-P-PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL-SHSL-----ND--GVFS  247 (340)
Q Consensus       178 F~l~-~-~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~-~~~~-----~~--g~l~  247 (340)
                      |.++ . ..++++|||+|||||||+++++++......   .+++|+||+|+.+|++|.+||+ ++.+     .+  +++ 
T Consensus        98 f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~~---~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~-  173 (257)
T 2qdx_A           98 LVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERY---EKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKL-  173 (257)
T ss_dssp             CCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHHC---SEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHE-
T ss_pred             ccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCCC---CeEEEEEEcCCHHHhHhHHHHHHHHHhchhhhccCCCcE-
Confidence            9887 4 368999999999999999999988765433   6899999999999999999999 8866     11  567 


Q ss_pred             ccCCCcEEEEEecCCC-CccchhhhHHHhH-HHHHHh--h-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          248 EAKGGGFYVAFSRKQP-QKVYVQHKMLEQS-QRIWNL--L-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       248 ~~~~~~~~~a~Sr~~~-~~~yVqd~l~~~~-~~l~~~--l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                           +++.++|+++. .+++|++.+.+.. +....+  + ..++.+|+|||+ +|++++++.|.+.
T Consensus       174 -----~~~~~~s~~~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~l~~~  234 (257)
T 2qdx_A          174 -----IYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSP-SMLEETSAVLDSF  234 (257)
T ss_dssp             -----EEEEEESSSCCSSBSCHHHHHHHSHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHHT
T ss_pred             -----EEEEEecCCCcccCceechhhhhhhHHHhcccccCCcCCCEEEEECCH-HHHHHHHHHHHHc
Confidence                 78889998743 4689998876532 221111  1 247899999998 9999998887653

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=99.94  E-value=1.7e-27  Score=231.60  Aligned_cols=181  Identities=18%  Similarity=0.277  Sum_probs=144.2

Q ss_pred             CCHHHHHHhcC--C---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC
Q 019521          103 MPIDWLVQLVP--P---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       103 ~p~~~l~~~lp--~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g  176 (340)
                      .||||+...+|  .   ..+|+|||+|+|.  .+.++|+|+.+..    ...+.|.+|+||. ++++  ||.|.+.+|.|
T Consensus       186 ~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~--~~~~~i~Vk~~~~----~~~~~G~~S~~L~~~l~~--Gd~v~v~gP~G  257 (403)
T 1cqx_A          186 EPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREGG----GPQPPGYVSNLLHDHVNV--GDQVKLAAPYG  257 (403)
T ss_dssp             CTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCCB----TTBCCCHHHHHHHHHCCT--TCEEEECCCBC
T ss_pred             CCCCEEEEEEecCCCCcceeecceecCCCC--CCeEEEEEEECCC----CCCCCCeehHHHhhCCCC--CCEEEEecCcc
Confidence            68999877775  2   3579999999985  4789999864310    1123699999998 5999  99999999999


Q ss_pred             CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEE
Q 019521          177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  255 (340)
Q Consensus       177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~  255 (340)
                      .|.++ +..+|++|||+|||||||++|++++.. ...   .+++|+||+|+.+|++|++||+++.+.++++      +++
T Consensus       258 ~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~~~---~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~------~~~  327 (403)
T 1cqx_A          258 SFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-APP---RQVVFVHGARNSAVHAMRDRLREAAKTYENL------DLF  327 (403)
T ss_dssp             SCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-SSC---CCEEEEEEESCSSSCHHHHHHHHHHHHCTTE------EEE
T ss_pred             CcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-CCC---CcEEEEEEeCChhhCcHHHHHHHHHHhCCCc------EEE
Confidence            99997 677899999999999999999999876 333   7899999999999999999999998765778      899


Q ss_pred             EEEecCCCC---------ccchhhh-HHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          256 VAFSRKQPQ---------KVYVQHK-MLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       256 ~a~Sr~~~~---------~~yVqd~-l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                      +++|++...         .++++.. +.+.   +  . ..++.+|+|||+ +|+++|++.|.+
T Consensus       328 ~~~s~~~~~~~~~~~~~~~G~i~~~~l~~~---~--~-~~~~~vyvCGp~-~m~~~v~~~L~~  383 (403)
T 1cqx_A          328 VFYDQPLPEDVQGRDYDYPGLVDVKQIEKS---I--L-LPDADYYICGPI-PFMRMQHDALKN  383 (403)
T ss_dssp             EEESSCCTTCCBTTTBSEESSCCGGGSHHH---H--C-CTTCEEEEESSH-HHHHHHHHHHHH
T ss_pred             EEECCCCcccccccccCcCCCcCHHHHhhc---c--C-CCCCEEEEeCCH-HHHHHHHHHHHH
Confidence            999986542         2344432 2111   0  1 237899999998 999999888765

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=99.94  E-value=2e-27  Score=218.59  Aligned_cols=193  Identities=17%  Similarity=0.137  Sum_probs=142.6

Q ss_pred             CCCHHHHHHhcC---CCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-
Q 019521          102 QMPIDWLVQLVP---PLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-  177 (340)
Q Consensus       102 ~~p~~~l~~~lp---~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-  177 (340)
                      ..||||+...++   ...+|+|||+|+|. .++.++|+|+++......+....|.+|+||.++++  |+.|.+.+|.|. 
T Consensus        43 ~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~-~~~~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~--Gd~v~v~gP~G~~  119 (270)
T 2cnd_A           43 LPIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPV--GSYIDVKGPLGHV  119 (270)
T ss_dssp             CCTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSE
T ss_pred             CCCCCEEEEEeeeCCcEEEEeeccCCCcc-CCCEEEEEEEEeccCcccccCCCCchhhHHhcCCC--CCEEEEECCcccc
Confidence            368998776654   24689999999985 35899999976532111111236999999999999  999999999996 


Q ss_pred             -------CCCCC---CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCC-Cc
Q 019521          178 -------LPRPP---PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDG-VF  246 (340)
Q Consensus       178 -------F~l~~---~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g-~l  246 (340)
                             |.++.   ..++++|||+|||||||++|++++...... ...+++|+||+|+.+|++|.+||+++.+.++ ++
T Consensus       120 ~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~-~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~  198 (270)
T 2cnd_A          120 EYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE-DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRL  198 (270)
T ss_dssp             ECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT-CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTE
T ss_pred             eeccccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCC-CCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcE
Confidence                   45542   468999999999999999999999875210 1278999999999999999999999987533 57


Q ss_pred             cccCCCcEEEEEecC---CC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHH-HHHHHHH
Q 019521          247 SEAKGGGFYVAFSRK---QP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEE  308 (340)
Q Consensus       247 ~~~~~~~~~~a~Sr~---~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~-v~~~L~~  308 (340)
                            +++.++|++   +.    .+++|++.+.+.   +......+..+|+|||+ +|+++ +++.|.+
T Consensus       199 ------~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---~l~~~~~~~~vyvCGp~-~m~~~~~~~~L~~  258 (270)
T 2cnd_A          199 ------KVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---HVPEGGDDTLALACGPP-PMIQFAISPNLEK  258 (270)
T ss_dssp             ------EEEEEESCCSCGGGCCCSEESSCCHHHHHH---HSCCCSSSEEEEEECCH-HHHHTTTHHHHHT
T ss_pred             ------EEEEEECCCCCCCCCcccccccCCHHHHHH---hcCCCcCCEEEEEECCH-HHHHHHHHHHHHH
Confidence                  788888873   11    367888764332   11111125689999998 89886 4666643

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=99.94  E-value=8.1e-27  Score=214.10  Aligned_cols=169  Identities=18%  Similarity=0.231  Sum_probs=137.2

Q ss_pred             CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCC-C
Q 019521          103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-L  178 (340)
Q Consensus       103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F  178 (340)
                      .||||+...+|.   ..+|+|||+|+|. ..+.++|+|+.         .+.|.+|+||.++++  ||.|.+.+|.|. |
T Consensus        35 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~-~~~~l~~~vk~---------~~~G~~S~~l~~l~~--Gd~v~v~gP~G~~f  102 (262)
T 1ep3_B           35 LPGQFLHLAVPNGAMLLRRPISISSWDK-RAKTCTILYRI---------GDETTGTYKLSKLES--GAKVDVMGPLGNGF  102 (262)
T ss_dssp             STTCEEEECCSCTTCCSCEEEECCEEET-TTTEEEEEEEC---------CCTTSHHHHHHTCCT--TCEEEEEEEESBCC
T ss_pred             CCCceEEEEcCCCCceeeEEEEeeeecC-CCCEEEEEEEE---------ecCCchHHHHhcCCC--CCEEEEEcccCCCc
Confidence            689998887775   6899999999985 35889999853         346999999999999  999999999997 9


Q ss_pred             CCCC--CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          179 PRPP--PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       179 ~l~~--~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      .++.  ..+|++|||+|||||||++|++++....     .+++|+||+|+++|++|.+||+++...  .+        ++
T Consensus       103 ~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~-----~~v~l~~~~r~~~~~~~~~el~~l~~~--~~--------~~  167 (262)
T 1ep3_B          103 PVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG-----CQMTILLGFASENVKILENEFSNLKNV--TL--------KI  167 (262)
T ss_dssp             CCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT-----CEEEEEEEESSGGGCCCHHHHHTSTTE--EE--------EE
T ss_pred             cCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC-----CeEEEEEEcCCHHHhhhHHHHhhhccC--cE--------EE
Confidence            9883  4789999999999999999999998753     679999999999999999999987532  23        22


Q ss_pred             EEecCC--CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          257 AFSRKQ--PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       257 a~Sr~~--~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                      + +++.  ..+++|++.+.+.       +.++..+|+|||+ .|++++++ |.+
T Consensus       168 ~-~~~~~~~~~g~v~~~l~~~-------~~~~~~vyvCGp~-~m~~~v~~-l~~  211 (262)
T 1ep3_B          168 A-TDDGSYGTKGHVGMLMNEI-------DFEVDALYTCGAP-AMLKAVAK-KYD  211 (262)
T ss_dssp             E-ETTCSSSEESCHHHHHHHC-------CSCCSEEEEESCH-HHHHHHHH-HTT
T ss_pred             E-ECCCCCcceeehHHHHHhh-------ccCCCEEEEECCH-HHHHHHHH-HHh
Confidence            2 3433  2367888866542       3447899999998 99999888 754

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.93  E-value=3.6e-26  Score=215.93  Aligned_cols=173  Identities=13%  Similarity=0.188  Sum_probs=139.7

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCC-Cccccc-cCCCCCCcEEEEEeecCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGL-CSVWLA-GLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~-~S~~L~-~l~~~~G~~v~v~~~~g~F~  179 (340)
                      ..||||+...+|.-.+|+|||+|+|.. .+.++|+|+         +...|. +|+||. ++++  |+.|.+.+|.|.|.
T Consensus        39 ~~pGQ~v~l~~~~g~~R~ySi~s~~~~-~~~l~i~Vk---------~~~~G~g~S~~L~~~l~~--Gd~v~v~gP~g~f~  106 (321)
T 2pia_A           39 FEAGANLTVAVPNGSRRTYSLCNDSQE-RNRYVIAVK---------RDSNGRGGSISFIDDTSE--GDAVEVSLPRNEFP  106 (321)
T ss_dssp             CCTTCEEEEECTTSCEEEEECCSCTTC-CSEEEEEEE---------CCTTSCSHHHHHHHSCCT--TCEEEECCCBCCSC
T ss_pred             CCCCCEEEEECCCCCcEEEEeCCCCCC-CCeEEEEEE---------EecCCcchhHHHHhcCCC--CCEEEEeCCccccc
Confidence            369999888888778999999999853 578999984         345688 899999 8999  99999999999999


Q ss_pred             CCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       180 l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      ++...++++|||+|||||||++|++++.... .   .+++|+||+|+.+|++|.+||+++... .++        .+.++
T Consensus       107 l~~~~~~~vliagG~GItP~~s~l~~l~~~~-~---~~v~l~~~~r~~~~~~~~~el~~l~~~-~~~--------~~~~~  173 (321)
T 2pia_A          107 LDKRAKSFILVAGGIGITPMLSMARQLRAEG-L---RSFRLYYLTRDPEGTAFFDELTSDEWR-SDV--------KIHHD  173 (321)
T ss_dssp             CCTTCSEEEEEEEGGGHHHHHHHHHHHHHHC-S---SEEEEEEEESCGGGCTTHHHHHSTTTT-TTE--------EEEEC
T ss_pred             cCCCCCCEEEEEecccHhHHHHHHHHHHHcC-C---CcEEEEEEECChhhhHHHHHHhcCccC-CeE--------EEEEC
Confidence            9844689999999999999999999998764 2   579999999999999999999988632 344        44556


Q ss_pred             cCCC-CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          260 RKQP-QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       260 r~~~-~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                      ++.. .+.++++++..        ...+..+|+|||+ +|++++++.|.+
T Consensus       174 ~~~~~g~~~~~~ll~~--------~~~~~~vyvCGP~-~m~~~v~~~l~~  214 (321)
T 2pia_A          174 HGDPTKAFDFWSVFEK--------SKPAQHVYCCGPQ-ALMDTVRDMTGH  214 (321)
T ss_dssp             TTCTTSCCCHHHHHSS--------CCTTEEEEEESCH-HHHHHHHHHTTT
T ss_pred             CCcccCccCHHHHhcc--------cCCCCEEEEECCH-HHHHHHHHHHHh
Confidence            5432 23455544332        2347899999998 999999888876

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.83  E-value=1.3e-21  Score=178.59  Aligned_cols=166  Identities=10%  Similarity=0.045  Sum_probs=121.5

Q ss_pred             CCCHHHHHHhcCC----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCcc-CCCCccccccCCCCCCcEEEEEeecC
Q 019521          102 QMPIDWLVQLVPP----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKR-TGLCSVWLAGLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       102 ~~p~~~l~~~lp~----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~-~G~~S~~L~~l~~~~G~~v~v~~~~g  176 (340)
                      ..|+||+...+|.    ...|+|||+|.+.   +.++|.|.+         .. .|.+|+||.++++  ||.|.+.+|.|
T Consensus        39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~---~~~~i~~~~---------~~~~G~~S~~l~~l~~--Gd~l~v~gP~G  104 (252)
T 2gpj_A           39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD---DEIDVDFVL---------HDTDGPASSWAKTAQV--GELIQIGGPGL  104 (252)
T ss_dssp             CCTTCEEEEEECCTTSCCEEEEEECCEEET---TEEEEEEEC---------CSSCCHHHHHHHHCCT--TCEEEEEEEEC
T ss_pred             CCCCCeEEEEcccCCCCCCCCceeeeccCC---CEEEEEEEE---------eCCCCcHHHHHhhCCC--CCEEEEecCCC
Confidence            4799998888874    4679999999763   677777642         23 3899999999999  99999999999


Q ss_pred             CCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          177 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       177 ~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      .|.++...++++|||+||||||+++|+++...   .   .++++++++|+.+|...   |   ... ..+      +++.
T Consensus       105 ~f~l~~~~~~~lliagGtGitPi~s~l~~l~~---~---~~~~~~~~~~~~~d~~~---l---~~~-~~~------~v~~  165 (252)
T 2gpj_A          105 KKLINFEADWFLLAGDMTALPAISVNLAKLPN---N---AVGYAVIEVLSEADIQP---L---VHP-EHV------ELHW  165 (252)
T ss_dssp             CCCCCSSSSEEEEEEEGGGHHHHHHHHHHSCT---T---CEEEEEEEESSGGGCCC---C---CCC-TEE------EEEE
T ss_pred             CCcCCCCCceEEEEcchhhHHHHHHHHHhCCC---C---CcEEEEEEECCHHHhhc---c---cCC-CCc------EEEE
Confidence            99987445799999999999999999998743   2   56789999999877542   1   122 345      6666


Q ss_pred             EEecCCCC-ccchhhhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHH
Q 019521          257 AFSRKQPQ-KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFE  307 (340)
Q Consensus       257 a~Sr~~~~-~~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~  307 (340)
                      +.+.+... ...+.+.+.+.      .+ ..+..+|+|||+ +|++++++.|.
T Consensus       166 ~~~~~~~~~g~~~~~~l~~~------~~~~~~~~vy~CGP~-~m~~av~~~l~  211 (252)
T 2gpj_A          166 VINPEADPEGRPLVERIAQL------PWLAGEPAVWIACEF-NSMRALRRHFK  211 (252)
T ss_dssp             EECSSCCTTCHHHHHHHTTS------CCCSSCEEEEEEEEH-HHHHHHHHHHH
T ss_pred             EeCCCCCcccHHHHHHHHhc------cCCCCCcEEEEEcCH-HHHHHHHHHHH
Confidence            66544321 11233322211      01 125689999998 99999998887

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.79  E-value=7.2e-20  Score=155.55  Aligned_cols=126  Identities=10%  Similarity=0.006  Sum_probs=85.5

Q ss_pred             CCCCCCcE-EEEEeecCCCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHh
Q 019521          161 LDPQQGIY-IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH  239 (340)
Q Consensus       161 l~~~~G~~-v~v~~~~g~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~  239 (340)
                      +++  ||. +.+.+|.|.|...+..+|++||||||||||+++++++.....     .+++|+ |+|+.+|.+|.+||+++
T Consensus         1 L~~--Gd~vl~v~gP~G~~f~~~~~~~~llIaGG~GItPl~sm~~~l~~~~-----~~v~l~-g~r~~~d~~~~~el~~l   72 (158)
T 3lrx_A            1 MKE--GDSLLNVAGPLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIG-----NDVTTL-HVTFEPMVILKEELEKA   72 (158)
T ss_dssp             -------------CCCCCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHHT-----CEEEEE-EECBGGGCCSHHHHHHH
T ss_pred             CcC--CCEeeEEECCCCCCCccCCCCeEEEEEccCcHHHHHHHHHHHHhcC-----CcEEEE-EeCCHHHhhHHHHHHHH
Confidence            456  999 599999998654344689999999999999999999987653     579999 99999999999999998


Q ss_pred             HhcCCCccccCCCcEEEEEecCCC--------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          240 SLNDGVFSEAKGGGFYVAFSRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       240 ~~~~g~l~~~~~~~~~~a~Sr~~~--------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ...   +      .+..+++++..        .+++|++.+.+....     .+...||+|||+ +|.+++.+.+.+.
T Consensus        73 ~~~---~------~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l~~-----~~~~~vy~CGP~-~mm~~v~~~l~~~  135 (158)
T 3lrx_A           73 VTR---H------IVEPVPLNPNQDFLANMKNVSQRLKEKVRELLES-----EDWDLVFMVGPV-GDQKQVFEVVKEY  135 (158)
T ss_dssp             SSE---E------EECCBCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-----SCCSEEEEESCH-HHHHHHHHHHGGG
T ss_pred             Hhc---e------EEEEeeccccccCCCCCCCCcccccHHHHHhhcc-----CCCCEEEEECCH-HHHHHHHHHHHHc
Confidence            643   3      33333333211        246666655432111     146789999998 9999998877654

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.76  E-value=1.6e-18  Score=144.68  Aligned_cols=121  Identities=10%  Similarity=-0.020  Sum_probs=87.1

Q ss_pred             EEEEeecCCCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccc
Q 019521          169 IPAWFQKGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSE  248 (340)
Q Consensus       169 v~v~~~~g~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~  248 (340)
                      +.+.+|.|.|...+..++++||||||||||+++++++....+     .++.++ |+|+++|.+|.+||+++.+.   +  
T Consensus         3 ~~v~GP~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~~-----~~v~l~-g~R~~~~~~~~~el~~l~~~---~--   71 (142)
T 3lyu_A            3 LNVAGPLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIG-----NDVTTL-HVTFEPMVILKEELEKAVTR---H--   71 (142)
T ss_dssp             ----CCCSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHTT-----CEEEEE-EEEEGGGCCSHHHHHTTSSE---E--
T ss_pred             eeeeCCCCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhcC-----CcEEEE-EeCCHHHhhHHHHHHHHHhh---e--
Confidence            468899998765544689999999999999999999987643     569999 99999999999999988643   3  


Q ss_pred             cCCCcEEEEEecCCC--------CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHH
Q 019521          249 AKGGGFYVAFSRKQP--------QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIV  310 (340)
Q Consensus       249 ~~~~~~~~a~Sr~~~--------~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~  310 (340)
                          .+..+++++..        .+++|++.+.+..    .. .+...||+|||+ +|.+.+.+.+.+..
T Consensus        72 ----~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~----~~-~~~~~vy~CGP~-~Mm~av~~~l~~~~  131 (142)
T 3lyu_A           72 ----IVEPVPLNPNQDFLANMKNVSQRLKEKVRELL----ES-EDWDLVFMVGPV-GDQKQVFEVVKEYG  131 (142)
T ss_dssp             ----EEEEECCCTTSCHHHHHHHHHHHHHHHHHHHH----HS-SCCSEEEEESCH-HHHHHHHHHHHHHT
T ss_pred             ----EEEEeecccccCCCCCCCCCccchhHHHHHhc----cc-CCCCEEEEECCH-HHHHHHHHHHHHcC
Confidence                44444444321        2456665544321    11 235789999998 99999988887753

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.75  E-value=5.2e-19  Score=152.76  Aligned_cols=134  Identities=13%  Similarity=0.216  Sum_probs=92.6

Q ss_pred             EEEeecCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcC----CCCCCCEEEEEeccCCchhh-hHHHHHHhHhcC
Q 019521          170 PAWFQKGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS----SGPAAPIIFFFGCRNEDDFL-YRELWLSHSLND  243 (340)
Q Consensus       170 ~v~~~~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~----~~~~~~~~L~~G~R~~~d~l-y~~eL~~~~~~~  243 (340)
                      .+.+|.|.|.++ ...+++||||||||||||+++++++.....    .....+++|+||+|+.++++ |.+||+++.+.+
T Consensus         2 ~v~GP~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~~~   81 (186)
T 3a1f_A            2 AVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLESQM   81 (186)
T ss_dssp             CTTSTTSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHHHH
T ss_pred             eEECCCCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHHHH
Confidence            356788988765 566899999999999999999999887531    00237899999999999887 999999997642


Q ss_pred             ------CCccccCCCcEEEEEecCCCC---ccchh-----hhHH--------------HhHHHHHHhhc-CCCEEEEeCC
Q 019521          244 ------GVFSEAKGGGFYVAFSRKQPQ---KVYVQ-----HKML--------------EQSQRIWNLLL-SKASIYVAGS  294 (340)
Q Consensus       244 ------g~l~~~~~~~~~~a~Sr~~~~---~~yVq-----d~l~--------------~~~~~l~~~l~-~~~~iyvCG~  294 (340)
                            +++      ++++.+|++...   +.|++     +.+.              ...+.+.+... .+..||+|||
T Consensus        82 ~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP  155 (186)
T 3a1f_A           82 QERNNAGFL------SYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGP  155 (186)
T ss_dssp             HHTTCTTSE------EEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred             hhccCCCeE------EEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCC
Confidence                  467      888889886321   11222     0000              00111222222 3678999999


Q ss_pred             CCccHHHHHHHHHHHH
Q 019521          295 ATKMPSDVWSTFEEIV  310 (340)
Q Consensus       295 ~~~M~~~v~~~L~~i~  310 (340)
                      + +|+++|++++.+..
T Consensus       156 ~-~m~~~v~~~l~~~g  170 (186)
T 3a1f_A          156 E-ALAETLSKQSISNS  170 (186)
T ss_dssp             H-HHHHHHHHHHHHTC
T ss_pred             H-HHHHHHHHHHHHhh
Confidence            8 99999998887753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1ja1a3	160	c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta	7e-43
d1ja1a1	279	b.43.4.1 (A:240-518) NADPH-cytochrome p450 reducta	2e-39
d1ddga2	153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	2e-34
d1f20a1	270	b.43.4.1 (A:963-1232) Neuronal nitric-oxide syntha	5e-34
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	5e-33
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	9e-28
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	6e-27
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	3e-22
d1ddga1	221	b.43.4.1 (A:226-446) Sulfite reductase flavoprotei	7e-22
d1jb9a1	157	b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxi	2e-12
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	4e-12
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	9e-10
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	2e-09
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	4e-09
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	5e-08
d1fnda1	136	b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox	8e-08
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	1e-06
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	1e-06
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	2e-06
d1umka2	147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	4e-06
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	5e-05
d2bmwa1	133	b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi	6e-05
d2piaa2	120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	1e-04

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  143 bits (362), Expect = 7e-43
 Identities = 66/166 (39%), Positives = 93/166 (56%), Gaps = 10/166 (6%)

Query: 178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNE-DDFLYREL 235
           LP    + P+I++GPGTG APF GF++ERA     G      + ++GCR   +D+LYRE 
Sbjct: 2   LP-FKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYRE- 59

Query: 236 WLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGS 294
            L+    DG  ++       VAFSR+Q  KVYVQH +    + +W L+    A IYVAG 
Sbjct: 60  ELARFHKDGALTQ-----LNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGD 114

Query: 295 ATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAWS 340
           A  M  DV +TF +IV++ G      A +++K L   GRY +  WS
Sbjct: 115 ARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVWS 160

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 279

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  138 bits (349), Expect = 2e-39
 Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 7/155 (4%)

Query: 27  EVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEG--RDDLYKYN 84
             P   RT +   +D+T+  PR      ++ +A+   E+E L   AS  G  ++    + 
Sbjct: 123 PCPTTYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWV 181

Query: 85  QKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTT 144
            + RR +L +L+D+PS++ PID L +L+P L+ R ++I+SS   HPN VH+    V +  
Sbjct: 182 VEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEA 241

Query: 145 PYKRKRTGLCSVWLAGLDP----QQGIYIPAWFQK 175
              R   G+ + WL   +P         +P + +K
Sbjct: 242 KSGRVNKGVATSWLRAKEPAGENGGRALVPMFVRK 276

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score =  121 bits (305), Expect = 2e-34
 Identities = 57/162 (35%), Positives = 87/162 (53%), Gaps = 9/162 (5%)

Query: 178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWL 237
           LP   P  P+I+IGPGTG APFR F+++RA   +  P    +FF      +DFLY+  W 
Sbjct: 1   LP-ANPETPVIMIGPGTGIAPFRAFMQQRAADEA--PGKNWLFFGNPHFTEDFLYQVEWQ 57

Query: 238 SHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATK 297
            + + +GV +        +A+SR Q +KVYVQ K+ EQ   +W  +   A IYV G A +
Sbjct: 58  RY-VKEGVLTR-----IDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANR 111

Query: 298 MPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
           M  DV     E++++ G    ++A  +L  L+   RY  + +
Sbjct: 112 MAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 270

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  124 bits (311), Expect = 5e-34
 Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 5/162 (3%)

Query: 10  QHKEMKNYLPDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQ 69
           +       + +    +   P  +    +  +D+T+  P     +  +  AT E EK+RL 
Sbjct: 106 ERNTALGVISNWKDESRLPPCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLL 164

Query: 70  YFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAH 129
             +  +G  +  ++   +  T++EVLE+FPS+QMP   L+  +  L+ R +SISSSP  +
Sbjct: 165 VLS--KGLQEYEEWKWGKNPTMVEVLEEFPSIQMPATLLLTQLSLLQPRYYSISSSPDMY 222

Query: 130 PNQVHLTVSVVSWTTPYK--RKRTGLCSVWLAGLDPQQGIYI 169
           P++VHLTV++VS+ T         G+CS WL  +     +  
Sbjct: 223 PDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPC 264

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (296), Expect = 5e-33
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 13/163 (7%)

Query: 183 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAP---IIFFFGCRNEDDFLYRELWLSH 239
           P VP IL+GPGTG APFR F ++R          P   ++ F   +++ D +YRE  L  
Sbjct: 8   PQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQA 67

Query: 240 SLNDGVFSEAKGGGFYVAFSRKQPQ-KVYVQHKMLEQSQRI--WNLLLSKASIYVAGSAT 296
                          Y A+SR+  + K YVQ  + EQ        L      IYV G   
Sbjct: 68  KNKGVFRE------LYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV- 120

Query: 297 KMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
            M +DV    + I++++G+ S + A  ++  L+   RYH + +
Sbjct: 121 TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 163

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score =  104 bits (259), Expect = 9e-28
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 16/163 (9%)

Query: 183 PSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNEDDFLYRELWLSHS 240
           P+   I+I  GTG APFRG++    ++             F G  N D  LY E + S+ 
Sbjct: 2   PNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYL 61

Query: 241 LNDGVFSEAKGGGFYVAFSRKQPQ----KVYVQHKMLEQSQRIWNLLLSKASIYVAGSAT 296
                        +  A SR+Q      K+YVQ K+ E S  I+ LL   A IY  G   
Sbjct: 62  KQYPDNFR-----YDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKG 116

Query: 297 KMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
            MP  +  T +++  + GE    S    L  L++  ++HVE +
Sbjct: 117 MMP-GIQDTLKKVAERRGE----SWDQKLAQLKKNKQWHVEVY 154

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  102 bits (254), Expect = 6e-27
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 10/165 (6%)

Query: 178 LPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAP--IIFFFGCRNEDDFLYREL 235
           +P   P+  +I++G GTG APFR F+ +   +             F G       LY+E 
Sbjct: 3   MP-KDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEE 61

Query: 236 WLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSK-ASIYVAGS 294
           +          +           + ++ +K+Y+Q +M + +  +W +L      +Y+ G 
Sbjct: 62  FEKM-KEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL 120

Query: 295 ATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
              M   +      + + EG         + + L++A +++VE +
Sbjct: 121 K-GMEKGIDDIMVSLAAAEGI----DWIEYKRQLKKAEQWNVEVY 160

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 89.3 bits (220), Expect = 3e-22
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 22/173 (12%)

Query: 178 LPRPPPSVPLILIGPGTGCAPFRGFVEER------AIQSSSGPAAPIIFFFGCRNEDDFL 231
           LP   P   +I++  GTG  P R ++         A              FG     + L
Sbjct: 1   LP-DDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNIL 59

Query: 232 YRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ----KVYVQHKMLEQSQRIWNL-LLSK 286
           Y+E                      A SR+Q      ++Y+Q ++ E + ++W L    K
Sbjct: 60  YKEELEEIQQKYPDNFR-----LTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQK 114

Query: 287 ASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
              Y+ G    M   + +      +KEG     + +++ K L++AGR+HVE +
Sbjct: 115 THTYICGPP-PMEEGIDAALSAAAAKEGV----TWSDYQKDLKKAGRWHVETY 162

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 221

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score = 90.2 bits (223), Expect = 7e-22
 Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 13/157 (8%)

Query: 19  PDIHKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRD 78
            D         + L   ++   ++T         E  +    +E     +          
Sbjct: 73  GDEPVTVEGKTLPLNEALQWHFELTV--NTANIVENYATLTRSETLLPLVG--------- 121

Query: 79  DLYKYNQKERRTVLEVLEDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVS 138
           D  K       T +  +  F   Q+  + L+ L+ PL  R +SI+SS     N+VH+TV 
Sbjct: 122 DKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVG 181

Query: 139 VVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQK 175
           VV +     R R G  S +LA     +   +  + + 
Sbjct: 182 VVRYDVE-GRARAGGASSFLADRVE-EEGEVRVFIEH 216

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 157

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 7/81 (8%)

Query: 96  EDFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYK-------R 148
                V  P +   +   P   R +SI+S+              V     Y         
Sbjct: 64  GQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDP 123

Query: 149 KRTGLCSVWLAGLDPQQGIYI 169
            + G+CS +L    P   I +
Sbjct: 124 SKNGVCSNFLCNSKPGDKIQL 144

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.5 bits (148), Expect = 4e-12
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 23/165 (13%)

Query: 183 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN 242
           P   L ++  GTG APF   +++  +         ++   G R  ++  Y++    H   
Sbjct: 6   PGKHLYMLSTGTGLAPFMSLIQDPEVY---ERFEKVVLIHGVRQVNELAYQQFITEHLPQ 62

Query: 243 DGVFSEAKGGGFYVAFSRKQ-------PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSA 295
              F EA         +  +            ++   L +   +  +        + GS 
Sbjct: 63  SEYFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGSP 122

Query: 296 TKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE-AW 339
             M  +     +    K      +            G Y +E A+
Sbjct: 123 -SMLDESCEVLDGFGLKISPRMGE-----------PGDYLIERAF 155

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 9e-10
 Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 6/123 (4%)

Query: 186 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV 245
           P+ LI  G G  P    ++  A     G  A + +F    N D   + +       +   
Sbjct: 8   PVTLISAGVGQTPMLAMLDTLAKA---GHTAQVNWFHAAENGDVHAFADEVKELGQSLPR 64

Query: 246 FSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWST 305
           F+      +Y   S     K     + L    ++          +               
Sbjct: 65  FTAHT---WYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQ 121

Query: 306 FEE 308
             +
Sbjct: 122 LVD 124

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 14/122 (11%)

Query: 183 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLN 242
              P++LI  G G  P    ++         P   ++F  G RN      R+     +  
Sbjct: 4   AKTPIVLISGGVGLTPMVSMLKVAL----QAPPRQVVFVHGARNSAVHAMRDRLREAAKT 59

Query: 243 DGVFSEAKGGGFYVAFSRKQPQKV----YVQHKMLEQSQRIWNLLLSKASIYVAGSATKM 298
                       +V + +  P+ V    Y    +++  Q   ++LL  A  Y+ G    M
Sbjct: 60  YENLD------LFVFYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFM 113

Query: 299 PS 300
             
Sbjct: 114 RM 115

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 52.3 bits (124), Expect = 4e-09
 Identities = 18/158 (11%), Positives = 35/158 (22%), Gaps = 14/158 (8%)

Query: 182 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSL 241
           P    L ++  GT   P+   +              ++     R   D  Y  L      
Sbjct: 4   PHCETLWMLATGTAIGPYLSILRLGKDL---DRFKNLVLVHAARYAADLSYLPLMQELEK 60

Query: 242 NDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD 301
                   +        +     ++    +  E    I   +  + S  +     +M  D
Sbjct: 61  RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRD 120

Query: 302 VWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVEAW 339
                +E         R             G    E +
Sbjct: 121 TQQLLKETRQMTKHLRRR-----------PGHMTAEHY 147

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 17/134 (12%), Positives = 40/134 (29%), Gaps = 8/134 (5%)

Query: 179 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS 238
            +   +  L +I  G+G  P    ++   ++        +   +  R EDD L R+    
Sbjct: 7   GKQRNARRLAMICGGSGITPMYQIIQA-VLRDQPEDHTEMHLVYANRTEDDILLRDELDR 65

Query: 239 HSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKM---LEQSQRIWNLLLSKASIYVAGSA 295
            +       +     +YV    K+P++ +            +               G  
Sbjct: 66  WAAEYPDRLK----VWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPP 121

Query: 296 TKMPSDVWSTFEEI 309
             +   +    E++
Sbjct: 122 PMIQFAISPNLEKM 135

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 48.5 bits (115), Expect = 8e-08
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 103 MPIDWLVQLVP-------PLKTRAFSISSSPLAHP---NQVHLTVSVVSWTTPYKRKRTG 152
                +  +         P K R +SI+SS L        V L V  + +T        G
Sbjct: 53  REGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKG 112

Query: 153 LCSVWLAGLDPQQGIYI 169
           +CS +L  L P   + +
Sbjct: 113 VCSNFLCDLKPGAEVKL 129

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 17/129 (13%), Positives = 30/129 (23%), Gaps = 10/129 (7%)

Query: 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSH 239
           +     P   +  GTG AP    V +               +FG   E +  Y +   S 
Sbjct: 4   KERGMAPRYFVAGGTGLAPVVSMVRQMQEW---TAPNETRIYFGVNTEPELFYIDELKSL 60

Query: 240 SLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMP 299
             +    +                     Q   ++  +       +   IY+ G    M 
Sbjct: 61  ERSMRNLT------VKACVWHPSGDWEGEQGSPIDALREDLESSDANPDIYLCGPP-GMI 113

Query: 300 SDVWSTFEE 308
                    
Sbjct: 114 DAACELVRS 122

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 180 RPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW 236
           R     P+ILI  GTG +  R  +       +  P   I  ++G R E         
Sbjct: 1   RDDEERPMILIAGGTGFSYARSILLTAL---ARNPNRDITIYWGGREEQHLYDLCEL 54

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 12/123 (9%)

Query: 186 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGV 245
           P++++  GTG APF   ++    +   G   P+   FG   + D +  E   +       
Sbjct: 7   PVLMLAGGTGIAPFLSMLQVLEQK---GSEHPVRLVFGVTQDCDLVALEQLDALQQKLPW 63

Query: 246 FSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWST 305
           F              +  +K YV   +                +Y+ G    M   V S 
Sbjct: 64  FEYRT---VVAHAESQHERKGYVTGHIEYDWLNGGE-----VDVYLCGPV-PMVEAVRSW 114

Query: 306 FEE 308
            + 
Sbjct: 115 LDT 117

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 4e-06
 Identities = 21/143 (14%), Positives = 40/143 (27%), Gaps = 13/143 (9%)

Query: 175 KGSLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRE 234
           K S P       + +I  GTG  P    +  RAI             F  + E D L R 
Sbjct: 9   KKSNPIIRTVKSVGMIAGGTGITPMLQVI--RAIMKDPDDHTVCHLLFANQTEKDILLRP 66

Query: 235 LWLSHSLNDGVFSEAKGGGFYVAFSRKQPQKVYVQHKMLEQSQRIWNLL---LSKASIYV 291
                              F + ++  +  + +   +     + I + L     +  + +
Sbjct: 67  ELEELRNKHSAR-------FKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 119

Query: 292 AGSATKMPSDVWSTFEEI-VSKE 313
            G    +        + +    E
Sbjct: 120 CGPPPMIQYACLPNLDHVGHPTE 142

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 7/51 (13%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 186 PLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELW 236
            +++IG G G  P     ++            +    G  +E+  +    +
Sbjct: 10  KILIIGGGIGVPPLYELAKQLEKTG-----CQMTILLGFASENVKILENEF 55

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score = 40.1 bits (93), Expect = 6e-05
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 97  DFPSVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRK----RTG 152
               +  P   + +   P K R +SI+S+              V        +      G
Sbjct: 50  QSIGIIPP--GVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYG 107

Query: 153 LCSVWLAGLDPQQGIYI 169
           +CS +L  ++P   + I
Sbjct: 108 VCSTYLTHIEPGSEVKI 124

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 4/68 (5%)

Query: 179 PRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLS 238
           P    +   IL+  G G  P      +   +           ++  R+ +   + +   S
Sbjct: 3   PLDKRAKSFILVAGGIGITPMLSMARQLRAE----GLRSFRLYYLTRDPEGTAFFDELTS 58

Query: 239 HSLNDGVF 246
                 V 
Sbjct: 59  DEWRSDVK 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	100.0
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	100.0
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	100.0
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.98
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.97
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.97
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.97
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.96
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.89
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.89
d1ddga1	221	Sulfite reductase flavoprotein {Escherichia coli [	99.89
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.86
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.85
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.83
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.81
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.81
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.8
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.78
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.73
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.61
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	99.23
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	99.19
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	99.01
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	98.67
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	98.59
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	98.58
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	98.52
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	98.49
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	98.44
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	98.35
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	98.35
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	98.32
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	98.23
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	98.06
d1o5za1	137	Folylpolyglutamate synthetase, C-terminal domain {	80.77

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.9e-40  Score=280.35  Aligned_cols=156  Identities=41%  Similarity=0.791  Sum_probs=142.6

Q ss_pred             CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC-CCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEE
Q 019521          179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG-PAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFY  255 (340)
Q Consensus       179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~-~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~  255 (340)
                      ++| ++++|+||||+|||||||+||++++......+ ..++++||||||+++ |++|++||+.+.++ +.+.     +++
T Consensus         1 rlP~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~-~~~~-----~~~   74 (160)
T d1ja1a3           1 RLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKD-GALT-----QLN   74 (160)
T ss_dssp             CCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHT-TSSS-----EEE
T ss_pred             CcCcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCCccccHHHHHHHHHHHHc-CCCc-----eeE
Confidence            467 88899999999999999999999987654332 458999999999988 99999999999988 5554     899


Q ss_pred             EEEecCCCCccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCE
Q 019521          256 VAFSRKQPQKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRY  334 (340)
Q Consensus       256 ~a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~  334 (340)
                      +++||++..+.|||+.+.++.+.+++++.+ ++.||||||++.|+++|+++|.+++.+.++++.++|++|+++|+++|||
T Consensus        75 ~a~Sr~~~~~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~~r~  154 (160)
T d1ja1a3          75 VAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRY  154 (160)
T ss_dssp             EEETTSSSSCCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred             EEeeccccCccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCe
Confidence            999999988999999999999999999866 8999999987689999999999999999999999999999999999999


Q ss_pred             EEeecC
Q 019521          335 HVEAWS  340 (340)
Q Consensus       335 ~~d~w~  340 (340)
                      ++||||
T Consensus       155 ~~dv~~  160 (160)
T d1ja1a3         155 SLNVWS  160 (160)
T ss_dssp             EEEEEC
T ss_pred             EEeccC
Confidence            999997

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.2e-34  Score=241.61  Aligned_cols=157  Identities=34%  Similarity=0.653  Sum_probs=135.6

Q ss_pred             CCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcC--CCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCC
Q 019521          177 SLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS--SGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGG  252 (340)
Q Consensus       177 ~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~--~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~  252 (340)
                      +|++| ++++|+||||+|||||||+|||+++.....  ....+++++|||+|+.. +++|.+|++.+.....++      
T Consensus         1 sF~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~------   74 (165)
T d1f20a2           1 SFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVFR------   74 (165)
T ss_dssp             TSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTSEE------
T ss_pred             CCCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCCce------
Confidence            58998 888999999999999999999998765321  11347899999999887 788999999999884555      


Q ss_pred             cEEEEEecCCC-CccchhhhHHHh-HHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 019521          253 GFYVAFSRKQP-QKVYVQHKMLEQ-SQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQ  329 (340)
Q Consensus       253 ~~~~a~Sr~~~-~~~yVqd~l~~~-~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~  329 (340)
                      ++++++||+.+ ..+|+++.+... .+.+++.+.+ ++.||+|||+ +|+++|+++|.++++++++++.++|++++++|+
T Consensus        75 ~~~~~~sr~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp~-~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~  153 (165)
T d1f20a2          75 ELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDV-TMAADVLKAIQRIMTQQGKLSEEDAGVFISRLR  153 (165)
T ss_dssp             EEEEEESSCTTSCCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEeccccCCCCcccchHHHHHHHHHHhhccCCCcEEEEECCc-chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            89999999765 357888887764 6667777655 8999999998 999999999999999999999999999999999


Q ss_pred             HCCCEEEeecC
Q 019521          330 RAGRYHVEAWS  340 (340)
Q Consensus       330 ~~~R~~~d~w~  340 (340)
                      ++|||++|||+
T Consensus       154 ~~~r~~~ev~~  164 (165)
T d1f20a2         154 DDNRYHEDIFG  164 (165)
T ss_dssp             HTTCEEEEECC
T ss_pred             HCCCEEEeccC
Confidence            99999999996

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-33  Score=234.70  Aligned_cols=151  Identities=36%  Similarity=0.648  Sum_probs=137.7

Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCc-hhhhHHHHHHhHhcCCCccccCCCcEEEE
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNED-DFLYRELWLSHSLNDGVFSEAKGGGFYVA  257 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~-d~ly~~eL~~~~~~~g~l~~~~~~~~~~a  257 (340)
                      || ++++|+||||||||||||+||++++......   .+++++||+|+.. +++|.+|++.+.+.+..+      +++++
T Consensus         1 LP~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~el~~~~~~~~~~------~~~~~   71 (153)
T d1ddga2           1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP---GKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLT------RIDLA   71 (153)
T ss_dssp             CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCHHHHCTTHHHHHHHHHTTSCC------EEEEE
T ss_pred             CCcCCCCCEEEEECchhHHHHHHHHHHHHHhcCC---CceEEeecccCcHHHHHhHHHHHHHHHcCCCc------eEEEE
Confidence            56 7889999999999999999999999987765   7888898888777 899999999999884445      89999


Q ss_pred             EecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEe
Q 019521          258 FSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHVE  337 (340)
Q Consensus       258 ~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~d  337 (340)
                      +|++.....|+++.+......+...+..++.+|+|||+..|.++|+++|.+++.+.++++.++|++++.+|+++|||++|
T Consensus        72 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~e~a~~~~~~l~~~gR~~~e  151 (153)
T d1ddga2          72 WSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRD  151 (153)
T ss_dssp             ETTSSSSCCCHHHHHHHTHHHHHHHHHTTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             EEecccCcccccchHHHHHHHHHhhhccCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEe
Confidence            99998888999999999888888888789999999988677899999999999999999999999999999999999999


Q ss_pred             ec
Q 019521          338 AW  339 (340)
Q Consensus       338 ~w  339 (340)
                      +|
T Consensus       152 ~~  153 (153)
T d1ddga2         152 VY  153 (153)
T ss_dssp             EC
T ss_pred             cC
Confidence            99

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.9e-32  Score=251.41  Aligned_cols=154  Identities=31%  Similarity=0.586  Sum_probs=144.7

Q ss_pred             CCCCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCC--cCHHHHHHHHHhCCCCHHHHHhhCC
Q 019521           22 HKNTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASP--EGRDDLYKYNQKERRTVLEVLEDFP   99 (340)
Q Consensus        22 ~~~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~--~~~~~~~~~~~~~~~~~~dvl~~fp   99 (340)
                      .+.|+|.++|++++|++|+||++ +|++.||+.||.||+|+.+|++|..|++.  ++.+.|++|+.+.+++++|+|.+||
T Consensus       118 ~~~p~p~~~tl~~lL~~~~Di~~-~p~k~~l~~La~~a~~~~~k~~L~~l~~~~~~~~~~y~~~~~~~~~~ildlL~~fp  196 (279)
T d1ja1a1         118 KKHPFPCPTTYRTALTYYLDITN-PPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVEARRHILAILQDYP  196 (279)
T ss_dssp             CCCSSSSSEEHHHHHHHTBCCSS-CCCHHHHHHHGGGBCSHHHHHHHHGGGCSSSHHHHHHHHHTTTTTCCHHHHHHHST
T ss_pred             cccCCCCchhHHHHHHhhccccC-CCcHHHHHHHHHHcCChHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCHHHHHhhCc
Confidence            35689999999999999999999 99999999999999999999999999874  4678899999999999999999999


Q ss_pred             CCCCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCc------EEEEEe
Q 019521          100 SVQMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGI------YIPAWF  173 (340)
Q Consensus       100 s~~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~------~v~v~~  173 (340)
                      ++++|+++|++.+|+++||+|||||+|..+++.++|+|++|+|.+..++.+.|+||+||+++.+  |+      .|+|++
T Consensus       197 s~~~pl~~ll~~lp~L~PR~YSISSSp~~~p~~v~ltv~vV~y~~~~g~~r~GvcS~~L~~l~~--~~~~~~~~~vpifi  274 (279)
T d1ja1a1         197 SLRPPIDHLCELLPRLQARYYAIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEP--AGENGGRALVPMFV  274 (279)
T ss_dssp             TBCCCHHHHHHHSCBCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSEEECHHHHHHHHCCC--CSTTSSCCEEEEEE
T ss_pred             ccCCCHHHHHHhCccCCCceeeEecCcccCCCEEEEEEEEEEeecCCCCcccccchHHHhhcCC--CCCcCCceEEEEEE
Confidence            9999999999999999999999999999999999999999999998889999999999998887  65      699999


Q ss_pred             ecCCC
Q 019521          174 QKGSL  178 (340)
Q Consensus       174 ~~g~F  178 (340)
                      +.+.|
T Consensus       275 r~s~F  279 (279)
T d1ja1a1         275 RKSQF  279 (279)
T ss_dssp             ECCSC
T ss_pred             cCCCC
Confidence            88877

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.4e-32  Score=249.87  Aligned_cols=148  Identities=32%  Similarity=0.543  Sum_probs=138.5

Q ss_pred             CCCcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCC
Q 019521           24 NTTEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQM  103 (340)
Q Consensus        24 ~~~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~  103 (340)
                      .+++.|+|++++|++|+||++ +|++.||+.||.||+|+.+|++|++|++  |.++|.+|+...+++++|+|++||++++
T Consensus       120 ~~~~~p~tl~~~l~~~~Di~~-~p~~~~l~~La~~~~~~~ek~~L~~l~~--~~~~~~~~~~~~~~tlldvL~~fps~~~  196 (270)
T d1f20a1         120 ESRLPPCTIFQAFKYYLDITT-PPTPLQLQQFASLATNEKEKQRLLVLSK--GLQEYEEWKWGKNPTMVEVLEEFPSIQM  196 (270)
T ss_dssp             CCSSCSBCHHHHHHHTBCCSS-CCCHHHHHHHHTTBCCHHHHHHHHHHTT--CSHHHHHHHHHHCCCHHHHHHHSTTBCB
T ss_pred             cCCCCCccHHHHHHhheeccc-CCCHHHHHHHHHHCCCHHHHHHHHhhcc--cHHHHHHHHhccCCcHHHHHHhccccCC
Confidence            446668999999999999999 9999999999999999999999999985  8889999999999999999999999999


Q ss_pred             CHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCC--ccCCCCccccccCCCCCCcEEEEEeecC
Q 019521          104 PIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKR--KRTGLCSVWLAGLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       104 p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~--~~~G~~S~~L~~l~~~~G~~v~v~~~~g  176 (340)
                      |++.|++.+|+++||+|||||+|..++++++|+|++|+|++..++  .+.|+||+||+++++  |+.|.++++.+
T Consensus       197 pl~~ll~~lp~L~PR~YSIsSSp~~~p~~v~Ltv~vV~y~~~~~~g~~r~GvcS~~L~~l~~--Gd~v~v~vr~s  269 (270)
T d1f20a1         197 PATLLLTQLSLLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQA--DDVVPCFVRGA  269 (270)
T ss_dssp             CHHHHHHHSCBCCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCT--TCEEEEEEECC
T ss_pred             CHHHHHHhccccccceeEEecCccCCCCEEEEEEEEEEEeccCCCCCeeeeechHHHhcCCC--CCEEEEEEecC
Confidence            999999999999999999999999999999999999999986544  578999999999999  99999998653

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.97  E-value=7.8e-31  Score=220.87  Aligned_cols=151  Identities=24%  Similarity=0.449  Sum_probs=127.4

Q ss_pred             CCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEE
Q 019521          179 PRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFY  255 (340)
Q Consensus       179 ~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~  255 (340)
                      .|| ++++|+||||+|||||||+||++++..+...+  ..++++||||+|+.+|++|.+|+.++.+......     .+.
T Consensus         2 ~LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~-----~~~   76 (160)
T d1fnda2           2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNF-----RLD   76 (160)
T ss_dssp             CCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTE-----EEE
T ss_pred             CCCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHHHHHHHHHHHHHHHhcCCce-----eEE
Confidence            467 78899999999999999999999998754332  3478999999999999999999999988733332     566


Q ss_pred             EEEecCCC----CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 019521          256 VAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQR  330 (340)
Q Consensus       256 ~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~  330 (340)
                      +++|++..    .+.|+++.+......+++.+.. ++.||+|||+ +|+++|.++|.+++..++    ..|++++++|++
T Consensus        77 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp~-~m~~~v~~~l~~~~~~~g----~~a~~~~~~l~~  151 (160)
T d1fnda2          77 FAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLK-GMEKGIDDIMVSLAAAEG----IDWIEYKRQLKK  151 (160)
T ss_dssp             EEETTTCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEECH-HHHHHHHHHHHHHHHTTT----CCHHHHHHHHHH
T ss_pred             EEEccchhccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCCH-HHHHHHHHHHHHHHHhcc----hhHHHHHHHHHH
Confidence            77777543    5789999999998888887755 8899999998 999999999999988764    347889999999


Q ss_pred             CCCEEEeec
Q 019521          331 AGRYHVEAW  339 (340)
Q Consensus       331 ~~R~~~d~w  339 (340)
                      +|||++|+|
T Consensus       152 ~~ry~~e~~  160 (160)
T d1fnda2         152 AEQWNVEVY  160 (160)
T ss_dssp             TTCEEEEEC
T ss_pred             cCCeEEecC
Confidence            999999999

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.97  E-value=1.8e-30  Score=217.41  Aligned_cols=148  Identities=32%  Similarity=0.482  Sum_probs=123.9

Q ss_pred             CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCC--CCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEe
Q 019521          182 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSG--PAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFS  259 (340)
Q Consensus       182 ~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~--~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~S  259 (340)
                      ++++|+||||+|||||||+||++++..+....  ..++++||||||+..|++|.+|+.++.+......     .+..+++
T Consensus         1 Dp~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~-----~~~~~~~   75 (154)
T d1jb9a2           1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNF-----RYDKALS   75 (154)
T ss_dssp             CTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTE-----EEEEEET
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccchhHHHHHHHHHHHhCCCCE-----EEEEEec
Confidence            46789999999999999999999998754322  3468999999999999999999999988733332     4555666


Q ss_pred             cCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEE
Q 019521          260 RKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYH  335 (340)
Q Consensus       260 r~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~  335 (340)
                      ++..    .+.++++.+....+.+.+.+.+++.+|||||+ .|+++|.++|.+++.+++.    .|++++.+|+++|||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yvCGp~-~mm~~v~~~L~~~~~~~g~----~~~~~~~~l~~~~r~~  150 (154)
T d1jb9a2          76 REQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK-GMMPGIQDTLKKVAERRGE----SWDQKLAQLKKNKQWH  150 (154)
T ss_dssp             TTCC----CCCCHHHHHHHTHHHHHHHHHTTCEEEEEECG-GGHHHHHHHHHHHHHHHTC----CHHHHHHHHHHTTCEE
T ss_pred             cCCcCcCCcccccchHHHHhHHHhhhcccCCCEEEEECCH-HHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHCCCEE
Confidence            6543    36788899888888888888889999999999 8999999999999988753    3777899999999999


Q ss_pred             Eeec
Q 019521          336 VEAW  339 (340)
Q Consensus       336 ~d~w  339 (340)
                      +|+|
T Consensus       151 ~d~w  154 (154)
T d1jb9a2         151 VEVY  154 (154)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9999

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.96  E-value=8.5e-29  Score=208.23  Aligned_cols=150  Identities=25%  Similarity=0.452  Sum_probs=124.0

Q ss_pred             CC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcC-----C-CCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCC
Q 019521          180 RP-PPSVPLILIGPGTGCAPFRGFVEERAIQSS-----S-GPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGG  252 (340)
Q Consensus       180 l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~-----~-~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~  252 (340)
                      || ++++|+||||||||||||+||++++.....     . ...++++|+||||+.+|.+|.+|+.++........     
T Consensus         1 lP~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~~~~~~~~~~~-----   75 (162)
T d2bmwa2           1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNF-----   75 (162)
T ss_dssp             CCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTE-----
T ss_pred             CCcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHHHHHHhcCCce-----
Confidence            57 778999999999999999999999875421     1 13478999999999999999999999887744443     


Q ss_pred             cEEEEEecCCC----CccchhhhHHHhHHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019521          253 GFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKA  327 (340)
Q Consensus       253 ~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~  327 (340)
                      .+.++.+++..    .+.++++...+..+.+...+.. ++.||||||+ +|.++|.+.|.+++...+..    +++++.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~~~~----~~~~~~~  150 (162)
T d2bmwa2          76 RLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPP-PMEEGIDAALSAAAAKEGVT----WSDYQKD  150 (162)
T ss_dssp             EEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECT-THHHHHHHHHHHHHHTTTCC----HHHHHHH
T ss_pred             EEEEEeecccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECCH-HHHHHHHHHHHHhhcccCcc----HHHHHHH
Confidence            66677776543    4678888888888888777665 8899999999 99999999999998766543    6779999


Q ss_pred             HHHCCCEEEeec
Q 019521          328 LQRAGRYHVEAW  339 (340)
Q Consensus       328 l~~~~R~~~d~w  339 (340)
                      |++.|||++|+|
T Consensus       151 l~~~~r~~~e~~  162 (162)
T d2bmwa2         151 LKKAGRWHVETY  162 (162)
T ss_dssp             HHHTTCEEEEEC
T ss_pred             HHHCCCeEEecC
Confidence            999999999999

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.89  E-value=7.7e-24  Score=172.86  Aligned_cols=112  Identities=21%  Similarity=0.332  Sum_probs=95.8

Q ss_pred             CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecC
Q 019521          182 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK  261 (340)
Q Consensus       182 ~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~  261 (340)
                      +..+|+||||||||||||+||+++....+..   .+++|+||+|+++|++|.+||+++.+.++++      ++..++|++
T Consensus         3 d~~rplv~IAgG~GItP~~s~l~~~~~~~~~---~~i~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~~~s~~   73 (133)
T d1krha2           3 DVKRPVLMLAGGTGIAPFLSMLQVLEQKGSE---HPVRLVFGVTQDCDLVALEQLDALQQKLPWF------EYRTVVAHA   73 (133)
T ss_dssp             CCSSCEEEEEEGGGHHHHHHHHHHHHHHCCS---SCEEEEEEESSGGGCCCHHHHHHHHHHCTTE------EEEEEETTC
T ss_pred             CCCCCEEEEEccHhHHHHHHHHHHHHHcCCC---CceEEEEeecchhHHHHHHHHHHHHHhCCce------eeeeeeecc
Confidence            5668999999999999999999998887765   7899999999999999999999998876889      889999986


Q ss_pred             CC---CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          262 QP---QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       262 ~~---~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ..   .++++++.+.+.      .+. .+..+|+|||+ +|++++++.|.+.
T Consensus        74 ~~~~~~~g~v~~~i~~~------~~~~~~~~vyiCGp~-~m~~~v~~~L~~~  118 (133)
T d1krha2          74 ESQHERKGYVTGHIEYD------WLNGGEVDVYLCGPV-PMVEAVRSWLDTQ  118 (133)
T ss_dssp             CSSSSEESCSGGGCCGG------GGGGGCSEEEEEEEH-HHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHh------hcccccceEEEECCH-HHHHHHHHHHHHc
Confidence            54   357888877654      222 37899999998 9999998888775

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.89  E-value=2.1e-23  Score=171.93  Aligned_cols=118  Identities=14%  Similarity=0.167  Sum_probs=99.0

Q ss_pred             CCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          178 LPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       178 F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      |.++ +..+|+||||+|||||||+||+++.......   .+++|+||+|+.+|++|++||++|.+.++++      +++.
T Consensus         1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~~~---~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~------~~~~   71 (141)
T d1tvca2           1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAP---NETRIYFGVNTEPELFYIDELKSLERSMRNL------TVKA   71 (141)
T ss_dssp             CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTCC---SCEEEEEECSSSTTCCCHHHHHHHHHHSSSC------EEEE
T ss_pred             CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHcCCC---CceEEEeecccchhhhhHHHHHHHHhhcccc------ccce
Confidence            6787 7889999999999999999999999888765   8899999999999999999999998776889      8999


Q ss_pred             EEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          257 AFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       257 a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ++|++..    .++++++.+.+....    ...+..||+|||+ +|++++.+.|.+.
T Consensus        72 ~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~vyiCGp~-~m~~~v~~~l~~~  123 (141)
T d1tvca2          72 CVWHPSGDWEGEQGSPIDALREDLES----SDANPDIYLCGPP-GMIDAACELVRSR  123 (141)
T ss_dssp             CCSSCSSCCSSSSSSSSHHHHHHHHH----SSSSSEEEEESSH-HHHHHHHHHHHHH
T ss_pred             eecccccCcCCccchhHHHHHHhccc----ccccceeeccCCH-HHHHHHHHHHHHc
Confidence            9988654    356787777654221    1237889999999 9999988888664

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=9.4e-24  Score=187.11  Aligned_cols=140  Identities=22%  Similarity=0.346  Sum_probs=116.0

Q ss_pred             CcCcccHHHHHHhccccCCCCCCHHHHHHHHHhccCHHHHHHHHhhcCCcCHHHHHHHHHhCCCCHHHHHhhCCCCCCCH
Q 019521           26 TEVPIKLRTFVELTMDVTSASPRRYFFEVMSYFATAEHEKERLQYFASPEGRDDLYKYNQKERRTVLEVLEDFPSVQMPI  105 (340)
Q Consensus        26 ~~~~~tl~~~l~~~~dl~~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvl~~fps~~~p~  105 (340)
                      -+.++|++++|++|+||+.  |.+.+|..+|.++.++..   +..+.   +.+.+.+|...  ..+ +.|.+||++++|+
T Consensus        80 ~~~~~~l~~~l~~~~di~~--~~~~~l~~~a~~~~~~~~---~~~~~---d~~~~~~~~~~--~~~-~~l~~~~~~~~pl  148 (221)
T d1ddga1          80 EGKTLPLNEALQWHFELTV--NTANIVENYATLTRSETL---LPLVG---DKAKLQHYAAT--TPI-VDMVRFSPAQLDA  148 (221)
T ss_dssp             TTEEEEHHHHHHHHBCCSC--CCHHHHHHHHHHHTCTTT---GGGTT---CTHHHHHHHHH--SCH-HHHHHHSCCCCCH
T ss_pred             CCCcccHHHHhcccccccC--CcHHHHHHHHHhcCCHHH---hhccC---CHHHHHHHhcc--cch-hHHhhcccCCCCH
Confidence            4568999999999999986  789999999999988632   23333   33455566542  444 4455799999999


Q ss_pred             HHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC-CCC
Q 019521          106 DWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG-SLP  179 (340)
Q Consensus       106 ~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g-~F~  179 (340)
                      ++|++.+|+++||+|||||+|..+++.++|+|++|+|.+. ++.+.|+||+||+ .+++  |++|.+++..+ .|+
T Consensus       149 ~~ll~~lp~l~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~-~~~r~GvcS~~L~~~l~~--g~~V~v~ir~s~~FR  221 (221)
T d1ddga1         149 EALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEE--EGEVRVFIEHNDNFR  221 (221)
T ss_dssp             HHHHHHSCBCCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCS--SCEEEEEEECCTTSC
T ss_pred             HHHHHhhhccCceeeeeccccccCCCeeeEEEEEEEeeCC-CCccceecHHHHHhhCCC--CCEEEEEEecCCCCC
Confidence            9999999999999999999999899999999999999874 6788999999998 5899  99999999766 574

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.7e-22  Score=166.09  Aligned_cols=137  Identities=13%  Similarity=0.154  Sum_probs=97.4

Q ss_pred             CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCC
Q 019521          183 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ  262 (340)
Q Consensus       183 ~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~  262 (340)
                      ..+++||||+|||||||+||++++......   ++++||||+|+.+|++|.++++++.+..+++.     .+..+.+++.
T Consensus         5 ~~k~lvlIa~GtGiaP~~s~l~~~~~~~~~---~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~-----~~~~~~~~~~   76 (148)
T d1fdra2           5 HCETLWMLATGTAIGPYLSILRLGKDLDRF---KNLVLVHAARYAADLSYLPLMQELEKRYEGKL-----RIQTVVSRET   76 (148)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHHHHCCSCTTC---SEEEEEEEESSGGGCTTHHHHHHHHHHTTTSE-----EEEEEESSSC
T ss_pred             CCCEEEEEEcCeEHHHHHHHHHHHHHhCCC---CcEEEEEecCcHHHHHHHHHhhhHHHhccccc-----cccccccCcc
Confidence            347899999999999999999987765544   89999999999999999999999988766663     4555666655


Q ss_pred             CC---ccchhhhHHHh--HHHHHHhhcC-CCEEEEeCCCCccHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEE
Q 019521          263 PQ---KVYVQHKMLEQ--SQRIWNLLLS-KASIYVAGSATKMPSDVWSTFEEIVSKEGEASRDSAANWLKALQRAGRYHV  336 (340)
Q Consensus       263 ~~---~~yVqd~l~~~--~~~l~~~l~~-~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~R~~~  336 (340)
                      ..   .+++++.+...  .+.+...+.. ++.||||||+ .|.+++.+.|.+..    |+++..       ..+.|+|+.
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~e~~----g~~e~~-------~~~~g~i~~  144 (148)
T d1fdra2          77 AAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNP-QMVRDTQQLLKETR----QMTKHL-------RRRPGHMTA  144 (148)
T ss_dssp             CTTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECH-HHHHHHHHHHHHHH----CCCBCB-------TTBCCSEEE
T ss_pred             ccccccccccchHHHHHHHHhhccccccccceEEEECCH-HHHHHHHHHHHHhc----CCCccC-------CCCCCeEEE
Confidence            43   34455544432  2222222222 6779999998 99999988887643    222110       133578988


Q ss_pred             eec
Q 019521          337 EAW  339 (340)
Q Consensus       337 d~w  339 (340)
                      |.|
T Consensus       145 E~~  147 (148)
T d1fdra2         145 EHY  147 (148)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            874

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.7e-21  Score=157.63  Aligned_cols=110  Identities=20%  Similarity=0.238  Sum_probs=90.2

Q ss_pred             CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecC
Q 019521          182 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK  261 (340)
Q Consensus       182 ~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~  261 (340)
                      +..+|+||||+|||||||+|+++++......   .+++|+||+|+.+|++|.+++.++...++++      .+....+++
T Consensus         3 d~~rplv~IagGtGiaP~~s~l~~~~~~~~~---~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~------~~~~~~~~~   73 (135)
T d1qfja2           3 DEERPMILIAGGTGFSYARSILLTALARNPN---RDITIYWGGREEQHLYDLCELEALSLKHPGL------QVVPVVEQP   73 (135)
T ss_dssp             CSSSCEEEEEETTCHHHHHHHHHHHHHHCTT---CCEEEEEEESSGGGCTTHHHHHHHHHHCTTE------EEEEEESSC
T ss_pred             CCCCCEEEEECceeHHHHHHHHHHHHHcccc---cceeEEEecccHhHHHHHHHHHHHHHhcCcc------ceeeeeccc
Confidence            5678999999999999999999999887665   8899999999999999999999998875677      677677665


Q ss_pred             CC----CccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHH
Q 019521          262 QP----QKVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFE  307 (340)
Q Consensus       262 ~~----~~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~  307 (340)
                      ..    ..+++++.+.+.      ... ++..+|+|||+ .|++++.+.|.
T Consensus        74 ~~~~~~~~g~~~~~~~~~------~~~~~~~~~yvCGp~-~m~~~~~~~L~  117 (135)
T d1qfja2          74 EAGWRGRTGTVLTAVLQD------HGTLAEHDIYIAGRF-EMAKIARDLFC  117 (135)
T ss_dssp             CTTCCSEESCHHHHHHHH------CSCCTTCEEEEESCH-HHHHHHHHHHH
T ss_pred             CcccccccCchHHHHHHh------ccCcccCceEeeCCH-HHHHHHHHHHH
Confidence            43    356787776543      222 37899999998 99988877764

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.5e-21  Score=160.67  Aligned_cols=118  Identities=14%  Similarity=0.186  Sum_probs=89.2

Q ss_pred             CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecC
Q 019521          182 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK  261 (340)
Q Consensus       182 ~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~  261 (340)
                      ..++|+||||+|||||||+||++++......   .+++|+||+|+.+|.+|.+++.++.+.++++      +++.+++++
T Consensus         4 ~~d~plv~IagGtGiaP~~s~l~~l~~~~~~---~~i~l~~~~r~~~d~~~~~el~~~~~~~~~~------~~~~~~~~~   74 (143)
T d1gvha3           4 ADDTPVTLISAGVGQTPMLAMLDTLAKAGHT---AQVNWFHAAENGDVHAFADEVKELGQSLPRF------TAHTWYRQP   74 (143)
T ss_dssp             CTTCCEEEEEEGGGGHHHHHHHHHHHHHTCC---SCEEEEEEESCTTTCCSHHHHHHHHHTSSSE------EEEEEESSC
T ss_pred             CCCCCEEEEEchhhHHHHHHHHHHHHHcCCC---ceEEEEeecCCHHHHHHHHHHHHHHHhCCce------EEEEEEecc
Confidence            3468999999999999999999999887665   8999999999999999999999998887888      888888876


Q ss_pred             CCC---ccchhhhHHHhHHHHHHhhc-CCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          262 QPQ---KVYVQHKMLEQSQRIWNLLL-SKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       262 ~~~---~~yVqd~l~~~~~~l~~~l~-~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ...   ..+++.......+.+.+... ++..+|+|||+ .|.++|.+.|.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iCGp~-~m~~~v~~~L~~~  125 (143)
T d1gvha3          75 SEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPV-GFMQFTAKQLVDL  125 (143)
T ss_dssp             CHHHHHHTCCSEESSCCGGGSSSCCCCTTCEEEEESCH-HHHHHHHHHHHHT
T ss_pred             CcccccccceeeeccccHHHHHhcccccCcEEEEeCcH-HHHHHHHHHHHHc
Confidence            542   11111111111111111222 28899999999 9999988877664

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.81  E-value=1.6e-20  Score=154.13  Aligned_cols=116  Identities=16%  Similarity=0.341  Sum_probs=86.7

Q ss_pred             CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecC
Q 019521          182 PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRK  261 (340)
Q Consensus       182 ~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~  261 (340)
                      +..+|+||||+|||||||+||++++.... .   .+++|+||+|+++|++|.+++..+.+.+.++      +++.+++++
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~~-~---~~i~li~~~r~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~   72 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQAP-P---RQVVFVHGARNSAVHAMRDRLREAAKTYENL------DLFVFYDQP   72 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCSS-C---CCEEEEEEESCSSSCHHHHHHHHHHHHCTTE------EEEEEESSC
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHcC-C---CcEEEEeeccChhhhhhHHHHHHHHHhCCCe------EEEEEEccc
Confidence            56789999999999999999998876433 3   7899999999999999999999998877888      899999987


Q ss_pred             CCC----ccchhhhHHHhHHHHHHhh-cCCCEEEEeCCCCccHHHHHHHHHHH
Q 019521          262 QPQ----KVYVQHKMLEQSQRIWNLL-LSKASIYVAGSATKMPSDVWSTFEEI  309 (340)
Q Consensus       262 ~~~----~~yVqd~l~~~~~~l~~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i  309 (340)
                      ...    ..+...... ....+.+.+ ..+..+|+|||+ +|++++++.|.+.
T Consensus        73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vyiCGp~-~m~~~v~~~L~~~  123 (142)
T d1cqxa3          73 LPEDVQGRDYDYPGLV-DVKQIEKSILLPDADYYICGPI-PFMRMQHDALKNL  123 (142)
T ss_dssp             CTTCCBTTTBSEESSC-CGGGSHHHHCCTTCEEEEESSH-HHHHHHHHHHHHT
T ss_pred             CCcccccccccchhhh-HHHHHHhhcccCCceEEEECCh-hHHHHHHHHHHHc
Confidence            542    111111000 011111122 347899999998 9999998888664

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.81  E-value=1.2e-20  Score=150.43  Aligned_cols=109  Identities=10%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             CCCCCCCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEE
Q 019521          177 SLPRPPPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYV  256 (340)
Q Consensus       177 ~F~l~~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~  256 (340)
                      .|.+++..+|+||||+|||||||+||++++.....    .+++++||+|+++|++|.++++++... .++      .+..
T Consensus         1 dF~l~~~~~~~v~IagGtGiaP~~s~~~~l~~~~~----~~~~l~~~~r~~~~~~~~~~l~~~~~~-~~~------~~~~   69 (120)
T d2piaa2           1 EFPLDKRAKSFILVAGGIGITPMLSMARQLRAEGL----RSFRLYYLTRDPEGTAFFDELTSDEWR-SDV------KIHH   69 (120)
T ss_dssp             CSCCCTTCSEEEEEEEGGGHHHHHHHHHHHHHHCS----SEEEEEEEESCGGGCTTHHHHHSTTTT-TTE------EEEE
T ss_pred             CCCCCCCCCCEEEEEecccHHHHHHHHHHHHHhcC----CCeEEEEeeCCHHHhhhhHHHHHHhhC-CCe------EEee
Confidence            47888777899999999999999999999877643    679999999999999999999999876 555      3333


Q ss_pred             EEecCCCCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHH
Q 019521          257 AFSRKQPQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTF  306 (340)
Q Consensus       257 a~Sr~~~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L  306 (340)
                      ..+++.. ...+...+        ....++..+|+|||+ +|+++|++.+
T Consensus        70 ~~~~~~~-~~~~~~~~--------~~~~~~~~~y~CGp~-~mi~~v~~~~  109 (120)
T d2piaa2          70 DHGDPTK-AFDFWSVF--------EKSKPAQHVYCCGPQ-ALMDTVRDMT  109 (120)
T ss_dssp             CTTCTTS-CCCHHHHH--------SSCCTTEEEEEESCH-HHHHHHHHHT
T ss_pred             ecCCCcc-cccHHHHh--------ccCCCcCEEEEeCCH-HHHHHHHHHH
Confidence            3333222 23322221        122458999999999 9999988865

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.3e-20  Score=151.75  Aligned_cols=123  Identities=13%  Similarity=0.192  Sum_probs=88.9

Q ss_pred             cCCCCCC-CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcC-CCccccCCC
Q 019521          175 KGSLPRP-PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLND-GVFSEAKGG  252 (340)
Q Consensus       175 ~g~F~l~-~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~-g~l~~~~~~  252 (340)
                      .+.+... ...++++|||+|||||||+||++++..+...  .++++|+||+|+.+|++|++||+++.+.+ .++      
T Consensus         8 ~~~~~~~~~~~k~i~lIagGtGItP~~s~l~~~l~~~~~--~~~i~L~~~~r~~~~~~~~~el~~l~~~~~~~~------   79 (147)
T d1umka2           8 DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDD--HTVCHLLFANQTEKDILLRPELEELRNKHSARF------   79 (147)
T ss_dssp             STTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTTC--CCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTE------
T ss_pred             CCCCCcccccCCeEEEEECCeecchHHHHHHHHHhcCCC--CceEEEEEEeCccccchhHHHHhhhhhhcCcce------
Confidence            3444433 5568999999999999999999998765332  26799999999999999999999998653 566      


Q ss_pred             cEEEEEecCCCC----ccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHH-HHHHHHHH
Q 019521          253 GFYVAFSRKQPQ----KVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEEI  309 (340)
Q Consensus       253 ~~~~a~Sr~~~~----~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~-v~~~L~~i  309 (340)
                      +++.+.+++...    ++++++.+.+.   .+....++..+|+|||+ .|++. +++.|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~~~vyiCGP~-~m~~~~~~~~L~~~  137 (147)
T d1umka2          80 KLWYTLDRAPEAWDYGQGFVNEEMIRD---HLPPPEEEPLVLMCGPP-PMIQYACLPNLDHV  137 (147)
T ss_dssp             EEEEEESSCCSSCSSEESSCCHHHHHH---HSCCGGGCCEEEEESCH-HHHHHTTHHHHHHH
T ss_pred             EEEEEecccccCcccceeehHHHHHHH---hcCCCcCCcEEEEeCCH-HHHHHHHHHHHHHc
Confidence            777777776542    45554433221   11111237899999998 99875 66777665

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.78  E-value=8.6e-20  Score=149.82  Aligned_cols=127  Identities=14%  Similarity=0.105  Sum_probs=83.5

Q ss_pred             CCCCCC---CCCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCC
Q 019521          176 GSLPRP---PPSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGG  252 (340)
Q Consensus       176 g~F~l~---~~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~  252 (340)
                      |.|.++   ...+++||||+|||||||+||+++....... ..++++|+||+|+.++.+|.+++..+.+..+...     
T Consensus         1 G~f~l~~~~~~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~-~~~~v~l~~g~r~~~~~~~~~~~~~~~~~~~~~~-----   74 (146)
T d2cnda2           1 GSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE-DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRL-----   74 (146)
T ss_dssp             SCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT-CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTE-----
T ss_pred             CeEEeCCCCCCCCEEEEEeceEEHhHHHHHHHHHHHhCCc-cCceEEEEEeecccccchhHHHHhhHHHhCCCce-----
Confidence            567664   3457999999999999999999998765421 2378999999999999999999999987644432     


Q ss_pred             cEEEEEecCCC----CccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHH-HHHHHHHH
Q 019521          253 GFYVAFSRKQP----QKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSD-VWSTFEEI  309 (340)
Q Consensus       253 ~~~~a~Sr~~~----~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~-v~~~L~~i  309 (340)
                      .++...+....    ..++......+..+.+.+...++..+|+|||+ +|.+. |++.|.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~vyiCGp~-~m~~~av~~~L~~~  135 (146)
T d2cnda2          75 KVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGPP-PMIQFAISPNLEKM  135 (146)
T ss_dssp             EEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECCH-HHHHTTTHHHHHTT
T ss_pred             eEEEeeccccCcccccccccCccchHHHHHhcccCCCCcEEEEECCH-HHHHHHHHHHHHHc
Confidence            44444433222    11222221112122222222236789999998 88875 56666553

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.73  E-value=9.9e-19  Score=145.51  Aligned_cols=130  Identities=18%  Similarity=0.295  Sum_probs=87.3

Q ss_pred             CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCC--CcEEEEEec
Q 019521          183 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKG--GGFYVAFSR  260 (340)
Q Consensus       183 ~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~--~~~~~a~Sr  260 (340)
                      +.+++||||+|||||||+||++++......   ++++++||+|+.+|.+|.++|..+...........-  .++....++
T Consensus         6 p~~~lvlIagGtGIaP~~sil~~~~~~~~~---~~~~l~~g~r~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (158)
T d1a8pa2           6 PGKHLYMLSTGTGLAPFMSLIQDPEVYERF---EKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVTR   82 (158)
T ss_dssp             CCSEEEEEEEGGGGHHHHHHTTCHHHHHHC---SEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESS
T ss_pred             CCCCEEEEEchhhHHHHHHHHHHHHHhCCC---CceeeeeccccHHHHhhHHHHHHHHhhhhhhhhccccceEEEEeccc
Confidence            457999999999999999999998877655   899999999999999999999988765221100000  034444555


Q ss_pred             CCCC-ccchhhhHHHh-H-HHHH-Hhh-cCCCEEEEeCCCCccHHHHHHHHHHHHHHhCCC
Q 019521          261 KQPQ-KVYVQHKMLEQ-S-QRIW-NLL-LSKASIYVAGSATKMPSDVWSTFEEIVSKEGEA  316 (340)
Q Consensus       261 ~~~~-~~yVqd~l~~~-~-~~l~-~~l-~~~~~iyvCG~~~~M~~~v~~~L~~i~~~~~~~  316 (340)
                      .... .+......... . +.+. ... .+++.||+|||+ +|.++|.+.|.+...+....
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yiCGp~-~m~~~v~~~L~~~G~~~~~~  142 (158)
T d1a8pa2          83 ESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGSP-SMLDESCEVLDGFGLKISPR  142 (158)
T ss_dssp             SCCSSBSCHHHHHHSSHHHHHHTCCCCCTTTEEEEEEECH-HHHHHHHHHHHHTTCCBCSS
T ss_pred             ccccccccccchhccchhhhhhhccccCcccceEEEECCH-HHHHHHHHHHHHcCCCccCC
Confidence            4432 22222222111 0 1111 111 227899999998 99999999999876655443

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.61  E-value=4.7e-16  Score=129.98  Aligned_cols=103  Identities=16%  Similarity=0.239  Sum_probs=78.0

Q ss_pred             CCCCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCC
Q 019521          183 PSVPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQ  262 (340)
Q Consensus       183 ~~~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~  262 (340)
                      ..++++|||+|||||||++|+++...+.     .+++++||+|+++|.+|.+||+++...          .+........
T Consensus         7 ~~~kvllIAgG~GitPl~sm~~~l~~~~-----~~v~l~~g~r~~~~~~~~~el~~~~~~----------~~~~~~~~~~   71 (160)
T d1ep3b2           7 STDKILIIGGGIGVPPLYELAKQLEKTG-----CQMTILLGFASENVKILENEFSNLKNV----------TLKIATDDGS   71 (160)
T ss_dssp             TTSEEEEEEEGGGSHHHHHHHHHHHHHT-----CEEEEEEEESSGGGCCCHHHHHTSTTE----------EEEEEETTCS
T ss_pred             CCCEEEEEEeeeeHHHHHHHHHHHHhcc-----CceEEEEecCCHHHHHHHHHHHHhhCC----------CccccccCcc
Confidence            4567999999999999999999877653     679999999999999999999988643          3343333222


Q ss_pred             -CCccchhhhHHHhHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHHH
Q 019521          263 -PQKVYVQHKMLEQSQRIWNLLLSKASIYVAGSATKMPSDVWSTFEE  308 (340)
Q Consensus       263 -~~~~yVqd~l~~~~~~l~~~l~~~~~iyvCG~~~~M~~~v~~~L~~  308 (340)
                       ..++++.+.+.+.       ..+...+|+|||. +|.+.|.+.+.+
T Consensus        72 ~~~~g~v~~~~~~~-------~~~~~~vy~CGP~-~m~~~v~~~~~~  110 (160)
T d1ep3b2          72 YGTKGHVGMLMNEI-------DFEVDALYTCGAP-AMLKAVAKKYDQ  110 (160)
T ss_dssp             SSEESCHHHHHHHC-------CSCCSEEEEESCH-HHHHHHHHHTTT
T ss_pred             ccccccHHHHHHhh-------ccccceeeeeccc-hHHHHHHHHHHh
Confidence             2356777654432       2347899999998 999888776654

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.23  E-value=7.2e-13  Score=109.74  Aligned_cols=69  Identities=25%  Similarity=0.351  Sum_probs=57.0

Q ss_pred             hcCCCCcceeecCCCCCCCC---CeEEEEEEEEEecCC----CCCccCCCCccccccCCCCCCcEEEEEeecCC-CCCC
Q 019521          111 LVPPLKTRAFSISSSPLAHP---NQVHLTVSVVSWTTP----YKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGS-LPRP  181 (340)
Q Consensus       111 ~lp~~~pR~YSIaS~p~~~~---~~v~l~V~~v~~~~~----~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~-F~l~  181 (340)
                      .+.+++||.|||||+|..++   +.+.++|+.+.|.++    .++.+.|+||+||+++++  ||.|.|++|.|. |.+|
T Consensus        79 ~~~p~~~R~YSIaSSp~~~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~--Gd~V~i~gp~g~~F~lP  155 (157)
T d1jb9a1          79 PGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKP--GDKIQLTGPSGKIMLLP  155 (157)
T ss_dssp             TTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCT--TCEEEEEEEECSTTCCC
T ss_pred             cCccCCcCEEEecCCCcCCCCCCCEEEEEEEEeeccccccccCCcccCceeehhhccCCC--cCEEEEEecCCCcccCC
Confidence            34467899999999997654   468888888877653    356789999999999999  999999999995 7887

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.19  E-value=1.9e-12  Score=104.79  Aligned_cols=74  Identities=27%  Similarity=0.322  Sum_probs=64.4

Q ss_pred             CCCHHHHHHhcC-------CCCcceeecCCCCCCC---CCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEE
Q 019521          102 QMPIDWLVQLVP-------PLKTRAFSISSSPLAH---PNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPA  171 (340)
Q Consensus       102 ~~p~~~l~~~lp-------~~~pR~YSIaS~p~~~---~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v  171 (340)
                      ..|||++...+|       ++.+|.|||||+|..+   .+.++++|+.+.|.+..++.+.|+||+||++|++  ||+|.+
T Consensus        52 y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~--GD~V~v  129 (136)
T d1fnda1          52 YREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKP--GAEVKL  129 (136)
T ss_dssp             CCTTCEEEEECSSBCTTSSBCCCEEEECCSCTTCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHTCCT--TCEEEE
T ss_pred             ccCCCEEEEECCCcccccccceeEEeecccCCcCCCCCCcEEEEEEEEeecccCCCcCCCceEehhhccCCC--cCEEEE
Confidence            489999877665       3568999999999653   4679999999999988788889999999999999  999999


Q ss_pred             EeecCC
Q 019521          172 WFQKGS  177 (340)
Q Consensus       172 ~~~~g~  177 (340)
                      .+|.|.
T Consensus       130 ~GP~Gk  135 (136)
T d1fnda1         130 TGPVGK  135 (136)
T ss_dssp             EEEECS
T ss_pred             eCCCCC
Confidence            999984

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.01  E-value=4.4e-11  Score=96.32  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=62.8

Q ss_pred             CCCHHHHHHhcCC-------CCcceeecCCCCCCC---CCeEEEEEEEEEecCC-CCCccCCCCccccccCCCCCCcEEE
Q 019521          102 QMPIDWLVQLVPP-------LKTRAFSISSSPLAH---PNQVHLTVSVVSWTTP-YKRKRTGLCSVWLAGLDPQQGIYIP  170 (340)
Q Consensus       102 ~~p~~~l~~~lp~-------~~pR~YSIaS~p~~~---~~~v~l~V~~v~~~~~-~~~~~~G~~S~~L~~l~~~~G~~v~  170 (340)
                      ..|||++-...|.       ..+|.|||||+|...   .+.++++|+.+.+.+. .+....|+||+||+++++  ||+|.
T Consensus        46 y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~--GD~v~  123 (133)
T d2bmwa1          46 YIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEP--GSEVK  123 (133)
T ss_dssp             CCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCT--TCEEE
T ss_pred             ccCCCEEEEEeccccccccccceeeeeecCCCcCCCCCccEEEEEEEeccccccccCCCCCcEehhhHhhCCC--CCEEE
Confidence            4789998777663       357999999999653   3579999998876543 356678999999999999  99999


Q ss_pred             EEeecCCCCC
Q 019521          171 AWFQKGSLPR  180 (340)
Q Consensus       171 v~~~~g~F~l  180 (340)
                      +.+|.|.|.|
T Consensus       124 v~GP~G~~fL  133 (133)
T d2bmwa1         124 ITGPVGKEML  133 (133)
T ss_dssp             EEEEECSSSC
T ss_pred             EeCCccceeC
Confidence            9999999865

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=2.6e-09  Score=81.22  Aligned_cols=65  Identities=18%  Similarity=0.096  Sum_probs=52.8

Q ss_pred             CCCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecC-C
Q 019521          102 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKG-S  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g-~  177 (340)
                      ..||||+...+|..   ..|+|||+|+|.+  +.++++|+         +...|.+|+||.++++  ||+|.+.+|.| .
T Consensus        30 f~pGQ~v~l~~~~~g~~~~R~YSi~s~p~~--~~~~~~vk---------~~~~G~~S~~l~~lk~--GD~v~v~gP~~g~   96 (99)
T d1fdra1          30 FTAGQFTKLGLEIDGERVQRAYSYVNSPDN--PDLEFYLV---------TVPDGKLSPRLAALKP--GDEVQVVSEAAGF   96 (99)
T ss_dssp             CCTTCEEEEEECC---CEEEEEECCSCTTC--SSEEEEEE---------CCTTCSSHHHHHTCCT--TCEEEEESSCBCC
T ss_pred             CCCCcEEEeccCCCCCcEEEEEccCCCCCC--ceeEEEEE---------EecCcHHHHHHhhCCC--CCEEEECcCCCCE
Confidence            47899987777733   5799999999863  78899984         4577999999999999  99999999765 4


Q ss_pred             CC
Q 019521          178 LP  179 (340)
Q Consensus       178 F~  179 (340)
                      |.
T Consensus        97 F~   98 (99)
T d1fdra1          97 FV   98 (99)
T ss_dssp             CS
T ss_pred             EE
Confidence            53

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=2.8e-09  Score=80.67  Aligned_cols=67  Identities=15%  Similarity=0.127  Sum_probs=54.0

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCCC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLPR  180 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~l  180 (340)
                      ..||||+...+|....|+|||+|+|. +++.++|+|+         ....|..|.||. .+++  |+.|.|.+|.|.+.+
T Consensus        30 f~~GQ~v~l~~~~~~~r~ySias~p~-~~~~l~l~ir---------~~~~g~~s~~l~~~l~~--G~~v~v~gP~G~~~l   97 (97)
T d1qfja1          30 FRAGQYLMVVMDERDKRPFSMASTPD-EKGFIELHIG---------ASEINLYAKAVMDRILK--DHQIVVDIPHGEAWL   97 (97)
T ss_dssp             CCTTCEEEEESSSSCEEEEECCSCTT-STTCEEEEEC---------------CCHHHHHHHHH--HSEEEEEEEECSCCC
T ss_pred             cCCCCEEEEEEcCCCcEEEEEEEcCC-CCcEEEEEEe---------EccCCchhHhHhhcCCC--CCEEEEeccCCceEC
Confidence            46899999999999999999999995 3688999984         456799999996 5899  999999999998764

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.58  E-value=5.8e-09  Score=79.20  Aligned_cols=64  Identities=17%  Similarity=0.127  Sum_probs=52.9

Q ss_pred             CCCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEE-eecCC
Q 019521          102 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAW-FQKGS  177 (340)
Q Consensus       102 ~~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~-~~~g~  177 (340)
                      ..||||+...+|..   ..|+|||+|+|.+  +.++++|+         +...|.+|+||.++++  ||+|.+. +|.|.
T Consensus        31 f~aGQ~~~l~~~~~g~~~~R~ySi~S~p~~--~~~~~~i~---------~~~~G~~S~~L~~l~~--Gd~v~v~~gP~G~   97 (99)
T d1a8pa1          31 FENGQFVMIGLEVDGRPLMRAYSIASPNYE--EHLEFFSI---------KVQNGPLTSRLQHLKE--GDELMVSRKPTGT   97 (99)
T ss_dssp             CCTTCEEEEEEEETTEEEEEEEECCSCTTS--SEEEEEEE---------CCSSCSSHHHHTTCCT--TCEEEEESCCBCS
T ss_pred             cCCCcEEEEeccCCCceeEeeccccCCCCC--CcEEEEEE---------EeCCCChhHHHHhCCC--CCEEEECCCCcee
Confidence            36899988887643   3599999999963  77888873         3467999999999999  9999997 89998


Q ss_pred             C
Q 019521          178 L  178 (340)
Q Consensus       178 F  178 (340)
                      |
T Consensus        98 l   98 (99)
T d1a8pa1          98 L   98 (99)
T ss_dssp             C
T ss_pred             E
Confidence            7

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=98.52  E-value=5.2e-09  Score=81.32  Aligned_cols=76  Identities=21%  Similarity=0.104  Sum_probs=61.8

Q ss_pred             CCHHHHHHhcCC---CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCC
Q 019521          103 MPIDWLVQLVPP---LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       103 ~p~~~l~~~lp~---~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~  179 (340)
                      .|+|++...++.   ...|+||++|+|. .++.++|+|+........+...+|.+|.||.++++  ||.|.+.+|.|.|.
T Consensus        34 ~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~-~~~~~~~~ik~~~~~~~~~~~~gG~~s~~l~~l~~--Gd~v~i~gP~G~F~  110 (114)
T d2cnda1          34 PIGKHIFVCATIEGKLCMRAYTPTSMVD-EIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPV--GSYIDVKGPLGHVE  110 (114)
T ss_dssp             CTTCEEEEEEEETTEEEEEEECCCSCTT-CCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred             cceEEEEEEeecccceEEeeeccCCCCC-CCCEEEEEEEeccCCCccccccCchhHHHHhhCCC--CCEEEEECCceeeE
Confidence            578888776653   2589999999995 46899999987654444455678999999999999  99999999999987


Q ss_pred             CC
Q 019521          180 RP  181 (340)
Q Consensus       180 l~  181 (340)
                      +.
T Consensus       111 y~  112 (114)
T d2cnda1         111 YT  112 (114)
T ss_dssp             CC
T ss_pred             EC
Confidence            63

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=98.49  E-value=5.2e-09  Score=80.99  Aligned_cols=71  Identities=17%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             CCCHHHHHHhcCC-----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeec
Q 019521          102 QMPIDWLVQLVPP-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK  175 (340)
Q Consensus       102 ~~p~~~l~~~lp~-----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~  175 (340)
                      ..||||+...++.     ...|+|||+|+|.  .+.++|+|+.+.    .++...|.+|+||. ++++  ||.|.+.+|.
T Consensus        35 ~~~GQ~v~l~~~~~~~~~~~~R~ySi~s~p~--~~~~~~~v~~~~----~~~~~~G~~S~~l~~~l~~--Gd~v~v~gP~  106 (111)
T d1cqxa2          35 FEPGQYTSVAIDVPALGLQQIRQYSLSDMPN--GRTYRISVKREG----GGPQPPGYVSNLLHDHVNV--GDQVKLAAPY  106 (111)
T ss_dssp             CCTTCEEEEEEEETTTTEEEEEEEECCSCCC--SSCEEEEEECCC----BTTBCCCHHHHHHHHHCCT--TCEEEECCCB
T ss_pred             CCCCCEEEEEeecCCCcceeeeeccccCCcc--CCCeEEEEEEec----CCCcccchhHHHHHhcCCC--CCEEEEEccC
Confidence            3689998776652     3589999999985  377999986431    23456799999997 6999  9999999999


Q ss_pred             CCCCC
Q 019521          176 GSLPR  180 (340)
Q Consensus       176 g~F~l  180 (340)
                      |.|.|
T Consensus       107 G~F~L  111 (111)
T d1cqxa2         107 GSFHI  111 (111)
T ss_dssp             CSCSC
T ss_pred             eEeEC
Confidence            99975

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=98.44  E-value=2.8e-08  Score=75.22  Aligned_cols=64  Identities=22%  Similarity=0.212  Sum_probs=54.3

Q ss_pred             CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecCCCC
Q 019521          103 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       103 ~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g~F~  179 (340)
                      .||||+...+|.. .+|+|||+|+|.  ++.++++|+         +...|.+|+||. .+++  ||+|.+.+|.|.|.
T Consensus        35 ~pGQ~v~l~i~g~~~~r~ys~~~~~~--~~~~~~~i~---------~~~~G~~s~~l~~~l~~--Gd~v~v~gP~G~Ff  100 (100)
T d1krha1          35 LAGQYVNVTLPGTTETRSYSFSSQPG--NRLTGFVVR---------NVPQGKMSEYLSVQAKA--GDKMSFTGPFGSFY  100 (100)
T ss_dssp             CTTCEEEEECTTSSCEEEEECCSCTT--CSEEEEEEE---------CCTTCHHHHHHHTTCCT--TCEEEEEEEECSCS
T ss_pred             CCCEEEEEEECCcceeEEeeccCCCc--cCceEEEEE---------EeeCCchhhhhhccCCC--CCEEEEeccccccC
Confidence            6999998888864 689999999985  478888874         446799999996 6999  99999999999884

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=98.35  E-value=5.5e-08  Score=74.19  Aligned_cols=63  Identities=17%  Similarity=0.178  Sum_probs=53.0

Q ss_pred             CCCHHHHHHhcCCCCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCC-Cccccc-cCCCCCCcEEEEEeecC
Q 019521          102 QMPIDWLVQLVPPLKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGL-CSVWLA-GLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       102 ~~p~~~l~~~lp~~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~-~S~~L~-~l~~~~G~~v~v~~~~g  176 (340)
                      ..||||+...+|.-..|+|||+|+|. +++.++|+|+         +...|. +|+||. ++++  ||.|.+.+|.+
T Consensus        39 f~pGQ~v~v~~~~~~~R~YSl~s~p~-~~~~~~i~Vk---------~~~~g~~~S~~l~~~l~~--Gd~v~v~~Prn  103 (103)
T d2piaa1          39 FEAGANLTVAVPNGSRRTYSLCNDSQ-ERNRYVIAVK---------RDSNGRGGSISFIDDTSE--GDAVEVSLPRN  103 (103)
T ss_dssp             CCTTCEEEEECTTSCEEEEECCSCTT-CCSEEEEEEE---------CCTTSCSHHHHHHHSCCT--TCEEEECCCBC
T ss_pred             CCCCceEEEEEecceeEEEEEecCCC-CCCEEEEEEE---------EECCCccchHHHHhcCCC--CCEEEEeCCcC
Confidence            47999999889887889999999985 4689999984         456776 499996 8999  99999998753

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=98.35  E-value=5.8e-08  Score=74.72  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             CCHHHHHHhcCCC-CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeecC
Q 019521          103 MPIDWLVQLVPPL-KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQKG  176 (340)
Q Consensus       103 ~p~~~l~~~lp~~-~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~g  176 (340)
                      .||||+...+|.. .+|+|||+|+|.. .+.++|+|         +....|.+|+||. .+++  |+.|.+.+|.|
T Consensus        45 ~pGQ~v~l~~~g~~~~R~ySias~p~~-~~~~~~~i---------~~~~~G~~S~~l~~~l~~--Gd~v~i~gP~G  108 (109)
T d1tvca1          45 EPGQFMDLTIPGTDVSRSYSPANLPNP-EGRLEFLI---------RVLPEGRFSDYLRNDARV--GQVLSVKGPLG  108 (109)
T ss_dssp             CSCCEEEECTTSCSSSEEECCBCCSSS-SCCEEEEE---------CCCTTSSSHHHHHHHSSS--SSEEEEEEEEC
T ss_pred             CCCcEEEEEECCccccccceeccCCcC-CceeEEEE---------EEeCCchHHHHHHhhCCC--CCEEEEeCCcc
Confidence            6899988878764 6899999999964 57899997         4567899999996 6999  99999999987

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=6.5e-08  Score=74.08  Aligned_cols=65  Identities=22%  Similarity=0.327  Sum_probs=53.9

Q ss_pred             CCCHHHHHHhcCC-----CCcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccc-cCCCCCCcEEEEEeec
Q 019521          102 QMPIDWLVQLVPP-----LKTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLA-GLDPQQGIYIPAWFQK  175 (340)
Q Consensus       102 ~~p~~~l~~~lp~-----~~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~-~l~~~~G~~v~v~~~~  175 (340)
                      ..||||+...++.     ...|+|||+|.|.  .+.++|+|+         +...|.+|+||. ++++  ||+|.+.+|.
T Consensus        37 ~~pGQ~v~l~~~~~~~~~~~~r~~s~ss~~~--~~~~~i~vk---------~~~~G~~S~~l~~~l~~--Gd~v~v~gP~  103 (107)
T d1gvha2          37 YRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD--GKGYRIAVK---------REEGGQVSNWLHNHANV--GDVVKLVAPA  103 (107)
T ss_dssp             CCTTCEEEEEECCTTCSSCEEEEEECCSCCC--SSCEEEEEE---------CCTTCHHHHHHHHTCCT--TCEEEEEEEE
T ss_pred             CCCCCEEEEEeeccccCceEEeeccccCCCC--CCceEEEEE---------EcCCcchhHHHHhcCCC--CCEEEEeCcc
Confidence            4789998776652     2469999999885  478999984         457899999997 7999  9999999999


Q ss_pred             CCCC
Q 019521          176 GSLP  179 (340)
Q Consensus       176 g~F~  179 (340)
                      |.|.
T Consensus       104 G~Ff  107 (107)
T d1gvha2         104 GDFF  107 (107)
T ss_dssp             CSCC
T ss_pred             ccCC
Confidence            9984

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.23  E-value=1e-07  Score=72.08  Aligned_cols=65  Identities=20%  Similarity=0.138  Sum_probs=53.5

Q ss_pred             CCCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCC
Q 019521          102 QMPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSL  178 (340)
Q Consensus       102 ~~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F  178 (340)
                      ..||||+...+|.-   ..|+|||+|.+. ..+.++|.++         ....|..|.||.++++  ||.|.+.+|.|.+
T Consensus        33 ~~pGQfv~l~~~~~~~~~~R~~Si~~~~~-~~~~i~~~i~---------~~~~g~~t~~l~~l~~--Gd~v~v~GP~G~~  100 (101)
T d1ep3b1          33 DLPGQFLHLAVPNGAMLLRRPISISSWDK-RAKTCTILYR---------IGDETTGTYKLSKLES--GAKVDVMGPLGNG  100 (101)
T ss_dssp             CSTTCEEEECCSCTTCCSCEEEECCEEET-TTTEEEEEEE---------CCCTTSHHHHHHTCCT--TCEEEEEEEESBC
T ss_pred             cCCCceEEEEccCCccEeeccceeeeCCC-CCcEEEEEEe---------ecCcchhhHHHHhCCC--CCEEEEecccCCC
Confidence            36899998888743   469999999885 3688999874         3356889999999999  9999999999953

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.6e-07  Score=69.04  Aligned_cols=75  Identities=20%  Similarity=0.011  Sum_probs=57.0

Q ss_pred             CCHHHHHHhcCCC---CcceeecCCCCCCCCCeEEEEEEEEEecCCCCCccCCCCccccccCCCCCCcEEEEEeecCCCC
Q 019521          103 MPIDWLVQLVPPL---KTRAFSISSSPLAHPNQVHLTVSVVSWTTPYKRKRTGLCSVWLAGLDPQQGIYIPAWFQKGSLP  179 (340)
Q Consensus       103 ~p~~~l~~~lp~~---~pR~YSIaS~p~~~~~~v~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~~~G~~v~v~~~~g~F~  179 (340)
                      .|+|++...++.-   ..|+||++|.+. .++.++++|++.......+...+|..|.||.+|++  ||.|.|++|.|.|.
T Consensus        44 ~~Gq~v~v~~~~~~~~~~R~Ys~~s~~~-~~g~~~~~vk~~~~~~~~~~~~Gg~~s~~l~~l~~--GD~v~v~gP~G~F~  120 (124)
T d1umka1          44 PVGQHIYLSARIDGNLVVRPYTPISSDD-DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQI--GDTIEFRGPSGLLV  120 (124)
T ss_dssp             CTTCEEEEEEEETTEEEEEEECCSSCTT-CCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCT--TCEEEEEEEECSEE
T ss_pred             ceeeEEEEEecccceeEEEeeccCCccc-CCceEEEEEEecccccccccCCCcchHHHHhcCCC--CCEEEEECCeeeeE
Confidence            5788876655432   469999999985 46899999975433222233457888899999999  99999999999986


Q ss_pred             C
Q 019521          180 R  180 (340)
Q Consensus       180 l  180 (340)
                      +
T Consensus       121 y  121 (124)
T d1umka1         121 Y  121 (124)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurD-like peptide ligases, peptide-binding domain
superfamily: MurD-like peptide ligases, peptide-binding domain
family: Folylpolyglutamate synthetase, C-terminal domain
domain: Folylpolyglutamate synthetase, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.77  E-value=7.2  Score=28.57  Aligned_cols=106  Identities=9%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             CCeEEEeCCcchhhHHHHHHHHHHhcCCCCCCCEEEEEeccCCchhhhHHHHHHhHhcCCCccccCCCcEEEEEecCCCC
Q 019521          185 VPLILIGPGTGCAPFRGFVEERAIQSSSGPAAPIIFFFGCRNEDDFLYRELWLSHSLNDGVFSEAKGGGFYVAFSRKQPQ  264 (340)
Q Consensus       185 ~pii~Ia~GtGIAPf~s~l~~~~~~~~~~~~~~~~L~~G~R~~~d~ly~~eL~~~~~~~g~l~~~~~~~~~~a~Sr~~~~  264 (340)
                      .|.+++=++-=..-+..+++........   .++++++|+....|.  ..-+..+..   .++     .++++  ..+..
T Consensus        10 ~~~iilD~AHN~~a~~~l~~~l~~~~~~---~~~~~i~g~~~dkd~--~~~l~~l~~---~~~-----~i~~~--~~~~~   74 (137)
T d1o5za1          10 GKMYILDGAHNPHGAESLVRSLKLYFNG---EPLSLVIGILDDKNR--EDILRKYTG---IFE-----RVIVT--RVPSP   74 (137)
T ss_dssp             TEEEEECCCCSHHHHHHHHHHHHHHCTT---CCEEEEECCCTTSCH--HHHHGGGTT---TCS-----EEEEC--CCSST
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhhhcc---ccceeeecccccccH--HHHHHHHHh---hcc-----eeeee--ecccc
Confidence            3566666666667777888777665444   689999998776674  233444433   342     33322  22221


Q ss_pred             ccchhhhHHHhHHH----------HHHhh-cCCCEEEEeCCCCccHHHHHHHH
Q 019521          265 KVYVQHKMLEQSQR----------IWNLL-LSKASIYVAGSATKMPSDVWSTF  306 (340)
Q Consensus       265 ~~yVqd~l~~~~~~----------l~~~l-~~~~~iyvCG~~~~M~~~v~~~L  306 (340)
                      +..-.+.+.+....          +.+.+ ..+..++|||+- -++.++.+.|
T Consensus        75 r~~~~~~l~~~~~~~~~~~~~~~~~~~ai~~~~~~ilv~GSl-ylvgev~~~l  126 (137)
T d1o5za1          75 RMKDMNSLVDMAKKFFKNVEVIEDPLEAIESTERATVVTGSL-FLVGYVREFL  126 (137)
T ss_dssp             TCCCHHHHHHHHHHHCSCCEECSSHHHHHHTCCSEEEEESCH-HHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHhCCCcEEecCHHHHHhCCCCCEEEECCH-HHHHHHHHHH
Confidence            22112222221111          11122 237889999997 6666665544