Citrus Sinensis ID: 019523

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
ccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEcccccHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHccHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHcccccEEEEEccccHHHHHccccHHHHHHHHHcccccccccccccEEEEccccccccccEEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccccccccHHHccccHHHHHHHHHccccccEccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEcccccccccHcccHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHEEEcccccccccccccccccccccccccEc
MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFgkatgccrgqggsmhmfskehnllggfafigegipvatgaaFTSKYRREVlkeadcdhvtlaffgdgtcnngqffeCLNMAALWKLPIVFVVENNLWAIGMShlratsdpqiykkgpafgmpgfhvdgmDVLKVREVAKEAIERArrgegptlvecetyrfrghsladpdelrdpaEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVefadesappprsqllenvfadpkgfgigpdgryrcedpkftegtahv
MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAierarrgegptlvecetyrfrghsladpdelrdPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFadesappprsqlleNVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIdevvedavefadesaPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
******FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA****GPTLVECETYRFRG*********************DPITALKKYLIESSL********I***I**V****************************************************
MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEG****
MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVE********PRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIGPDGRY*C*****TE*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKARYAARDPITALKKYLIESSLASEAExxxxxxxxxxxxxxxxxxxxxSAPPPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
O24457428 Pyruvate dehydrogenase E1 yes no 0.997 0.789 0.908 0.0
Q7XTJ3425 Pyruvate dehydrogenase E1 yes no 1.0 0.797 0.873 1e-178
Q1XDM0346 Pyruvate dehydrogenase E1 N/A no 0.923 0.904 0.677 1e-126
P51267344 Pyruvate dehydrogenase E1 N/A no 0.923 0.909 0.683 1e-126
Q1RJX4326 Pyruvate dehydrogenase E1 yes no 0.899 0.935 0.423 9e-77
Q92IS3326 Pyruvate dehydrogenase E1 yes no 0.896 0.932 0.414 9e-76
Q4UKQ6326 Pyruvate dehydrogenase E1 yes no 0.896 0.932 0.411 2e-74
Q9ZDR4326 Pyruvate dehydrogenase E1 yes no 0.899 0.935 0.403 3e-73
Q68XA9326 Pyruvate dehydrogenase E1 yes no 0.899 0.935 0.400 4e-73
Q9R9N5348 Pyruvate dehydrogenase E1 yes no 0.893 0.870 0.450 5e-72
>sp|O24457|ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic OS=Arabidopsis thaliana GN=PDH-E1 ALPHA PE=1 SV=1 Back     alignment and function desciption
 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/339 (90%), Positives = 322/339 (94%), Gaps = 1/339 (0%)

Query: 1   MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSK 60
           MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSK
Sbjct: 91  MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSK 150

Query: 61  GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRR 120
           GV ARAVMSELFGK TGCCRGQGGSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRR
Sbjct: 151 GVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRR 210

Query: 121 EVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 180
           EVLK+ DCD VT+AFFGDGTCNNGQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATS
Sbjct: 211 EVLKQ-DCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATS 269

Query: 181 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240
           DP+I+KKGPAFGMPG HVDGMDVLKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLAD
Sbjct: 270 DPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLAD 329

Query: 241 PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAP 300
           PDELRD AEKA+YAARDPI ALKKYLIE+ LA EAELK+IEKKIDE+VE+AVEFAD S  
Sbjct: 330 PDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQ 389

Query: 301 PPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 339
           P RSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTA V
Sbjct: 390 PGRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAQV 428
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1
>sp|Q7XTJ3|ODPA3_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0119400 PE=2 SV=2 Back     alignment and function description
>sp|Q1XDM0|ODPA_PORYE Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1 Back     alignment and function description
>sp|P51267|ODPA_PORPU Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1 Back     alignment and function description
>sp|Q1RJX4|ODPA_RICBR Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1 Back     alignment and function description
>sp|Q92IS3|ODPA_RICCN Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=pdhA PE=3 SV=1 Back     alignment and function description
>sp|Q4UKQ6|ODPA_RICFE Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhA PE=3 SV=1 Back     alignment and function description
>sp|Q9ZDR4|ODPA_RICPR Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii (strain Madrid E) GN=pdhA PE=3 SV=1 Back     alignment and function description
>sp|Q68XA9|ODPA_RICTY Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=pdhA PE=3 SV=1 Back     alignment and function description
>sp|Q9R9N5|ODPA_RHIME Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti (strain 1021) GN=pdhA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
255548035433 pyruvate dehydrogenase, putative [Ricinu 0.997 0.780 0.949 0.0
118486324 442 unknown [Populus trichocarpa] 1.0 0.766 0.946 0.0
224064370355 predicted protein [Populus trichocarpa] 1.0 0.954 0.946 0.0
225453620433 PREDICTED: pyruvate dehydrogenase E1 com 0.997 0.780 0.932 0.0
356504193418 PREDICTED: pyruvate dehydrogenase E1 com 1.0 0.811 0.926 0.0
356520231432 PREDICTED: pyruvate dehydrogenase E1 com 1.0 0.784 0.926 0.0
356573267427 PREDICTED: pyruvate dehydrogenase E1 com 1.0 0.793 0.929 0.0
356559679432 PREDICTED: pyruvate dehydrogenase E1 com 1.0 0.784 0.911 0.0
193290722431 putative pyruvate dehydrogenase E1 alpha 1.0 0.786 0.899 0.0
15223294428 pyruvate dehydrogenase E1 component subu 0.997 0.789 0.908 0.0
>gi|255548035|ref|XP_002515074.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223545554|gb|EEF47058.1| pyruvate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/339 (94%), Positives = 332/339 (97%), Gaps = 1/339 (0%)

Query: 1   MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSK 60
           M+LGR+FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSK
Sbjct: 96  MVLGRAFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSK 155

Query: 61  GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRR 120
           GVPARAVMSELFGK TGCCRGQGGSMHMFSK+HN+LGGFAFIGEGIPVATGAAFTSKYRR
Sbjct: 156 GVPARAVMSELFGKTTGCCRGQGGSMHMFSKDHNVLGGFAFIGEGIPVATGAAFTSKYRR 215

Query: 121 EVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 180
           EVLKE DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS
Sbjct: 216 EVLKE-DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 274

Query: 181 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240
           DPQI+KKGPAFGMPG HVDGMDVLKVREVAKEAI RARRGEGPTLVECETYRFRGHSLAD
Sbjct: 275 DPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLAD 334

Query: 241 PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAP 300
           PDELRDPAEKA YAARDPIT+LKKY+IE+SLASEAELKAIEKKIDEVVED+VEFADES  
Sbjct: 335 PDELRDPAEKAHYAARDPITSLKKYIIENSLASEAELKAIEKKIDEVVEDSVEFADESPV 394

Query: 301 PPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 339
           PPRSQLLENVFADPKGFGIGPDGRYRCEDPKFT+GTAHV
Sbjct: 395 PPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTQGTAHV 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118486324|gb|ABK95003.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064370|ref|XP_002301442.1| predicted protein [Populus trichocarpa] gi|222843168|gb|EEE80715.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453620|ref|XP_002267676.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha [Vitis vinifera] gi|296089009|emb|CBI38712.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504193|ref|XP_003520883.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356520231|ref|XP_003528767.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356573267|ref|XP_003554784.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356559679|ref|XP_003548126.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|193290722|gb|ACF17669.1| putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum] Back     alignment and taxonomy information
>gi|15223294|ref|NP_171617.1| pyruvate dehydrogenase E1 component subunit alpha [Arabidopsis thaliana] gi|2454182|gb|AAB86803.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|15450707|gb|AAK96625.1| At1g01090/T25K16_8 [Arabidopsis thaliana] gi|17380622|gb|AAL36074.1| At1g01090/T25K16_8 [Arabidopsis thaliana] gi|110742108|dbj|BAE98984.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|332189112|gb|AEE27233.1| pyruvate dehydrogenase E1 component subunit alpha [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
TAIR|locus:2200980428 PDH-E1 ALPHA "pyruvate dehydro 0.997 0.789 0.876 2.8e-160
GENEDB_PFALCIPARUM|PF11_0256608 PF11_0256 "pyruvate dehydrogen 0.356 0.199 0.606 1.1e-73
UNIPROTKB|Q8IIB8608 PF11_0256 "Pyruvate dehydrogen 0.356 0.199 0.606 1.1e-73
UNIPROTKB|Q0C0R6336 pdhA "Pyruvate dehydrogenase c 0.902 0.910 0.445 7.2e-68
TIGR_CMR|GSU_2443325 GSU_2443 "dehydrogenase comple 0.814 0.849 0.462 9.2e-68
TIGR_CMR|SPO_2240330 SPO_2240 "pyruvate dehydrogena 0.896 0.921 0.423 2e-65
TIGR_CMR|ECH_0220327 ECH_0220 "pyruvate dehydrogena 0.902 0.935 0.407 1.1e-64
TIGR_CMR|NSE_0802334 NSE_0802 "pyruvate dehydrogena 0.899 0.913 0.402 1.8e-64
TAIR|locus:2025966389 E1 ALPHA "pyruvate dehydrogena 0.908 0.791 0.407 3.5e-59
UNIPROTKB|Q2GLN8345 pdhA "Pyruvate dehydrogenase c 0.811 0.797 0.428 5.7e-59
TAIR|locus:2200980 PDH-E1 ALPHA "pyruvate dehydrogenase E1 alpha" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1561 (554.6 bits), Expect = 2.8e-160, P = 2.8e-160
 Identities = 297/339 (87%), Positives = 309/339 (91%)

Query:     1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSK 60
             MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSK
Sbjct:    91 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSK 150

Query:    61 GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRR 120
             GV ARAVMSELFGK TGCCRGQGGSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRR
Sbjct:   151 GVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRR 210

Query:   121 EVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 180
             EVLK+ DCD VT+AFFGDGTCNNGQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATS
Sbjct:   211 EVLKQ-DCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATS 269

Query:   181 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240
             DP+I+KKGPAFGMPG HVDGMDVLKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLAD
Sbjct:   270 DPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLAD 329

Query:   241 PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXXXXXXXP 300
             PDELRD AEKA+YAARDPI ALKKYLIE+ LA EAELK+IEKKI                
Sbjct:   330 PDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQ 389

Query:   301 PPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 339
             P RSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTA V
Sbjct:   390 PGRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAQV 428
GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0006096 "glycolysis" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009536 "plastid" evidence=ISS
GENEDB_PFALCIPARUM|PF11_0256 PF11_0256 "pyruvate dehydrogenase E1 component, alpha subunit, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIB8 PF11_0256 "Pyruvate dehydrogenase E1 component, alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C0R6 pdhA "Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase, alpha subunit" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2443 GSU_2443 "dehydrogenase complex, E1 component, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2240 SPO_2240 "pyruvate dehydrogenase complex, E1 component, alpha subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0220 ECH_0220 "pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0802 NSE_0802 "pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TAIR|locus:2025966 E1 ALPHA "pyruvate dehydrogenase complex E1 alpha subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q2GLN8 pdhA "Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q72GU1ODBA_THET21, ., 2, ., 4, ., 40.33650.89970.8310yesno
Q9R9N5ODPA_RHIME1, ., 2, ., 4, ., 10.45040.89380.8706yesno
Q7XTJ3ODPA3_ORYSJ1, ., 2, ., 4, ., 10.87391.00.7976yesno
O31404ACOA_BACSU1, ., 1, ., 1, ., -0.41020.89080.9069yesno
O66112ODPA_ZYMMO1, ., 2, ., 4, ., 10.42810.89380.8559yesno
O24457ODPA3_ARATH1, ., 2, ., 4, ., 10.90850.99700.7897yesno
Q5SLR4ODBA_THET81, ., 2, ., 4, ., 40.33650.89970.8310yesno
Q1RJX4ODPA_RICBR1, ., 2, ., 4, ., 10.42300.89970.9355yesno
Q68XA9ODPA_RICTY1, ., 2, ., 4, ., 10.40060.89970.9355yesno
Q4UKQ6ODPA_RICFE1, ., 2, ., 4, ., 10.41150.89670.9325yesno
P51267ODPA_PORPU1, ., 2, ., 4, ., 10.68370.92330.9098N/Ano
Q92IS3ODPA_RICCN1, ., 2, ., 4, ., 10.41470.89670.9325yesno
Q9ZDR4ODPA_RICPR1, ., 2, ., 4, ., 10.40380.89970.9355yesno
Q1XDM0ODPA_PORYE1, ., 2, ., 4, ., 10.67730.92330.9046N/Ano
P27745ACOA_CUPNH1, ., 1, ., 1, ., -0.36680.88490.9009yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.963
4th Layer1.2.4.10.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II001653
SubName- Full=Putative uncharacterized protein; (355 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.III.1461.1
SubName- Full=Putative uncharacterized protein; (351 aa)
••• ••• 0.992
estExt_fgenesh4_pm.C_LG_I0194
pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (358 aa)
••• ••• 0.992
grail3.0080008401
hypothetical protein (411 aa)
•••• •• 0.986
estExt_Genewise1_v1.C_LG_IV4361
SubName- Full=Putative uncharacterized protein; (418 aa)
•••• •• 0.985
estExt_Genewise1_v1.C_410201
hypothetical protein (414 aa)
• •• •• 0.969
gw1.XIX.2128.1
hypothetical protein (435 aa)
• •• •• 0.968
gw1.97.147.1
dihydrolipoamide acetyltransferase (448 aa)
• •  •• 0.967
fgenesh4_pg.C_LG_III000191
SubName- Full=Putative uncharacterized protein; (512 aa)
• •  •• 0.962
LPD1
precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)
•    •• 0.959
estExt_fgenesh4_pg.C_LG_VIII0227
hypothetical protein (588 aa)
• •  •• 0.956

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
PLN02374433 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl 0.0
TIGR03182315 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E 0.0
CHL00149341 CHL00149, odpA, pyruvate dehydrogenase E1 componen 0.0
cd02000293 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph 1e-149
COG1071358 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena 1e-142
pfam00676303 pfam00676, E1_dh, Dehydrogenase E1 component 1e-125
PLN02269362 PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp 2e-97
TIGR03181341 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E 3e-84
cd02012255 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami 3e-10
cd00568168 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) 8e-09
PRK05899 586 PRK05899, PRK05899, transketolase; Reviewed 6e-07
TIGR00232 653 TIGR00232, tktlase_bact, transketolase, bacterial 9e-07
pfam02775151 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en 4e-06
COG3959243 COG3959, COG3959, Transketolase, N-terminal subuni 5e-06
COG0028550 COG0028, IlvB, Thiamine pyrophosphate-requiring en 4e-05
cd02015186 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) fa 5e-05
cd02002178 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa 5e-05
cd02004172 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate 2e-04
COG0021 663 COG0021, TktA, Transketolase [Carbohydrate transpo 3e-04
cd02005183 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP 3e-04
PRK07710571 PRK07710, PRK07710, acetolactate synthase catalyti 4e-04
PRK07092530 PRK07092, PRK07092, benzoylformate decarboxylase; 7e-04
pfam00456333 pfam00456, Transketolase_N, Transketolase, thiamin 0.001
cd02007195 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam 0.002
cd02014178 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) fam 0.003
>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information 
 Score =  738 bits (1907), Expect = 0.0
 Identities = 320/339 (94%), Positives = 327/339 (96%)

Query: 1   MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSK 60
           M+LGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK+DSVVSTYRDHVHALSK
Sbjct: 95  MVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSK 154

Query: 61  GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRR 120
           GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAF+SKYRR
Sbjct: 155 GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRR 214

Query: 121 EVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 180
           EVLKE  CD VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS
Sbjct: 215 EVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 274

Query: 181 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240
           DP+I+KKGPAFGMPG HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD
Sbjct: 275 DPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 334

Query: 241 PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAP 300
           PDELRDPAEKA YAARDPI ALKKYLIE+ LA+EAELKAIEKKIDEVVEDAVEFAD S  
Sbjct: 335 PDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPL 394

Query: 301 PPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAHV 339
           PPRSQLLENVFADPKGFGIGPDGRYRCEDPKFT GTA V
Sbjct: 395 PPRSQLLENVFADPKGFGIGPDGRYRCEDPKFTAGTAQV 433

Length = 433
>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component Back     alignment and domain information
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed Back     alignment and domain information
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast Back     alignment and domain information
>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Back     alignment and domain information
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) Back     alignment and domain information
>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate binding domain Back     alignment and domain information
>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
PLN02374433 pyruvate dehydrogenase (acetyl-transferring) 100.0
COG1071358 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
PLN02269362 Pyruvate dehydrogenase E1 component subunit alpha 100.0
CHL00149341 odpA pyruvate dehydrogenase E1 component alpha sub 100.0
KOG0225394 consensus Pyruvate dehydrogenase E1, alpha subunit 100.0
TIGR03182315 PDH_E1_alph_y pyruvate dehydrogenase E1 component, 100.0
TIGR03181341 PDH_E1_alph_x pyruvate dehydrogenase E1 component, 100.0
PF00676300 E1_dh: Dehydrogenase E1 component; InterPro: IPR00 100.0
cd02000293 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) 100.0
KOG1182432 consensus Branched chain alpha-keto acid dehydroge 100.0
PRK09404 924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
TIGR00239 929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
cd02016265 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami 100.0
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
PRK12315 581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.98
KOG0450 1017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 99.94
KOG0451 913 consensus Predicted 2-oxoglutarate dehydrogenase, 99.94
COG0567 906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 99.92
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 99.9
TIGR00232 653 tktlase_bact transketolase, bacterial and yeast. T 99.9
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 99.9
PRK12754 663 transketolase; Reviewed 99.9
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 99.9
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 99.9
PTZ00089 661 transketolase; Provisional 99.89
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 99.89
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 99.89
PRK05899 624 transketolase; Reviewed 99.89
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 99.88
PRK12753 663 transketolase; Reviewed 99.88
cd02011227 TPP_PK Thiamine pyrophosphate (TPP) family, Phosph 99.88
cd02017386 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam 99.88
COG3959243 Transketolase, N-terminal subunit [Carbohydrate tr 99.88
COG0021 663 TktA Transketolase [Carbohydrate transport and met 99.88
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 99.87
PF00456332 Transketolase_N: Transketolase, thiamine diphospha 99.87
PLN02790 654 transketolase 99.87
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 99.86
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 99.86
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 99.86
PRK05444 580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.85
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 99.85
COG0028550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 99.85
TIGR03186 889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 99.84
TIGR00759 885 aceE pyruvate dehydrogenase E1 component, homodime 99.84
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 99.84
PRK06163202 hypothetical protein; Provisional 99.84
TIGR01504588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 99.84
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 99.84
cd02005183 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, 99.84
TIGR00204 617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 99.83
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 99.83
PRK12474518 hypothetical protein; Provisional 99.82
PRK07418616 acetolactate synthase 3 catalytic subunit; Reviewe 99.82
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 99.82
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 99.82
PRK09107595 acetolactate synthase 3 catalytic subunit; Validat 99.82
PRK07586514 hypothetical protein; Validated 99.82
PRK06154565 hypothetical protein; Provisional 99.82
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 99.82
PRK06725570 acetolactate synthase 3 catalytic subunit; Validat 99.81
PRK11269591 glyoxylate carboligase; Provisional 99.81
PRK08979572 acetolactate synthase 3 catalytic subunit; Validat 99.81
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 99.81
PRK07979574 acetolactate synthase 3 catalytic subunit; Validat 99.81
TIGR02418539 acolac_catab acetolactate synthase, catabolic. Ace 99.81
PRK05858542 hypothetical protein; Provisional 99.81
PRK07524535 hypothetical protein; Provisional 99.81
PRK07525588 sulfoacetaldehyde acetyltransferase; Validated 99.81
TIGR03457579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 99.81
PRK06965587 acetolactate synthase 3 catalytic subunit; Validat 99.81
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 99.8
PRK06466574 acetolactate synthase 3 catalytic subunit; Validat 99.8
TIGR03393539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 99.8
PRK09124574 pyruvate dehydrogenase; Provisional 99.8
PRK06048561 acetolactate synthase 3 catalytic subunit; Reviewe 99.8
CHL00099585 ilvB acetohydroxyacid synthase large subunit 99.8
PRK08273597 thiamine pyrophosphate protein; Provisional 99.8
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 99.8
PRK08527563 acetolactate synthase 3 catalytic subunit; Validat 99.8
PRK08617552 acetolactate synthase; Reviewed 99.8
PRK06546578 pyruvate dehydrogenase; Provisional 99.8
PRK07710571 acetolactate synthase catalytic subunit; Reviewed 99.79
PRK06456572 acetolactate synthase catalytic subunit; Reviewed 99.79
PLN02470585 acetolactate synthase 99.79
PRK12571 641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.79
PRK06457549 pyruvate dehydrogenase; Provisional 99.79
TIGR02720575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 99.79
PRK07092530 benzoylformate decarboxylase; Reviewed 99.79
PRK08611576 pyruvate oxidase; Provisional 99.79
PRK08978548 acetolactate synthase 2 catalytic subunit; Reviewe 99.79
PRK06112578 acetolactate synthase catalytic subunit; Validated 99.79
PRK08155564 acetolactate synthase catalytic subunit; Validated 99.79
PRK08322547 acetolactate synthase; Reviewed 99.79
PRK08266542 hypothetical protein; Provisional 99.79
PRK06882574 acetolactate synthase 3 catalytic subunit; Validat 99.78
PLN02573578 pyruvate decarboxylase 99.78
PRK07282566 acetolactate synthase catalytic subunit; Reviewed 99.78
PRK13012 896 2-oxoacid dehydrogenase subunit E1; Provisional 99.78
PRK08327569 acetolactate synthase catalytic subunit; Validated 99.78
PRK08199557 thiamine pyrophosphate protein; Validated 99.78
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 99.77
PRK07789612 acetolactate synthase 1 catalytic subunit; Validat 99.77
TIGR00118558 acolac_lg acetolactate synthase, large subunit, bi 99.77
PLN02234 641 1-deoxy-D-xylulose-5-phosphate synthase 99.77
PLN02582 677 1-deoxy-D-xylulose-5-phosphate synthase 99.76
PRK07064544 hypothetical protein; Provisional 99.76
TIGR03394535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 99.76
PRK05261 785 putative phosphoketolase; Provisional 99.76
TIGR03254554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 99.76
PRK06276586 acetolactate synthase catalytic subunit; Reviewed 99.76
PRK09405 891 aceE pyruvate dehydrogenase subunit E1; Reviewed 99.76
PRK09259569 putative oxalyl-CoA decarboxylase; Validated 99.74
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 99.74
PRK05778301 2-oxoglutarate ferredoxin oxidoreductase subunit b 99.74
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 99.72
PRK11867286 2-oxoglutarate ferredoxin oxidoreductase subunit b 99.72
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 99.72
PRK07449568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 99.72
PRK11869280 2-oxoacid ferredoxin oxidoreductase subunit beta; 99.71
KOG0523 632 consensus Transketolase [Carbohydrate transport an 99.7
KOG4166675 consensus Thiamine pyrophosphate-requiring enzyme 99.7
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 99.69
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 99.68
TIGR03336595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 99.67
COG1154 627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 99.66
PF13292270 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn 99.65
PLN02225 701 1-deoxy-D-xylulose-5-phosphate synthase 99.55
PLN02980 1655 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi 99.54
KOG1185571 consensus Thiamine pyrophosphate-requiring enzyme 99.51
COG3961557 Pyruvate decarboxylase and related thiamine pyroph 99.47
COG3962617 Acetolactate synthase [Amino acid transport and me 99.31
COG3960592 Glyoxylate carboligase [General function predictio 99.25
COG1013294 PorB Pyruvate:ferredoxin oxidoreductase and relate 99.12
PF09364379 XFP_N: XFP N-terminal domain; InterPro: IPR018970 99.06
KOG1184561 consensus Thiamine pyrophosphate-requiring enzyme 99.04
COG2609 887 AceE Pyruvate dehydrogenase complex, dehydrogenase 99.02
cd03377365 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), 98.76
COG4231640 Indolepyruvate ferredoxin oxidoreductase, alpha an 98.36
COG3957 793 Phosphoketolase [Carbohydrate transport and metabo 98.35
TIGR021761165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 98.2
COG1165566 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car 97.91
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 97.91
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 97.71
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 97.53
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 96.85
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 96.76
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 96.68
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 96.64
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 96.54
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 96.18
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 95.86
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 95.76
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 95.58
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 95.47
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 94.88
PRK08611 576 pyruvate oxidase; Provisional 94.27
PRK09627375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 94.06
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 94.01
KOG4166 675 consensus Thiamine pyrophosphate-requiring enzyme 94.0
PRK06457 549 pyruvate dehydrogenase; Provisional 93.99
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 93.85
PRK08366 390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 93.51
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 93.47
PRK08155 564 acetolactate synthase catalytic subunit; Validated 93.44
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 93.37
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 93.33
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 93.25
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 93.25
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 93.19
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 93.14
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 93.05
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 93.05
PRK07524 535 hypothetical protein; Provisional 93.02
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 93.0
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 92.99
PRK07064 544 hypothetical protein; Provisional 92.98
PLN02470 585 acetolactate synthase 92.77
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 92.76
PRK07586 514 hypothetical protein; Validated 92.72
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 92.68
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 92.66
PRK06112 578 acetolactate synthase catalytic subunit; Validated 92.58
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 92.54
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 92.49
PRK08199 557 thiamine pyrophosphate protein; Validated 92.34
PRK11269 591 glyoxylate carboligase; Provisional 92.32
PRK08266 542 hypothetical protein; Provisional 92.26
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 92.17
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 92.13
PRK08322 547 acetolactate synthase; Reviewed 92.07
PRK09124 574 pyruvate dehydrogenase; Provisional 91.92
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 91.86
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 91.84
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 91.84
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 91.75
TIGR03394 535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 91.57
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 91.57
PRK08273 597 thiamine pyrophosphate protein; Provisional 91.42
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 91.25
PRK12474 518 hypothetical protein; Provisional 91.16
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 91.01
PRK08617 552 acetolactate synthase; Reviewed 90.9
COG0674365 PorA Pyruvate:ferredoxin oxidoreductase and relate 90.79
PRK09622 407 porA pyruvate flavodoxin oxidoreductase subunit al 90.73
PRK05858 542 hypothetical protein; Provisional 90.63
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 90.62
PRK07092 530 benzoylformate decarboxylase; Reviewed 90.53
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 90.36
PRK06546 578 pyruvate dehydrogenase; Provisional 89.76
PRK08327 569 acetolactate synthase catalytic subunit; Validated 89.67
TIGR00173 432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 89.61
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 89.1
PRK08367 394 porA pyruvate ferredoxin oxidoreductase subunit al 88.78
PLN02573 578 pyruvate decarboxylase 87.82
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 87.31
PRK06154 565 hypothetical protein; Provisional 86.89
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 85.04
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 84.47
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 83.87
COG4032172 Predicted thiamine-pyrophosphate-binding protein [ 83.34
PTZ00089661 transketolase; Provisional 82.14
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 81.25
PLN02980 1655 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi 80.98
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 80.46
TIGR00173432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 80.03
>PLN02374 pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information 
Probab=100.00  E-value=3.7e-84  Score=632.26  Aligned_cols=339  Identities=94%  Similarity=1.484  Sum_probs=327.2

Q ss_pred             CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523            1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR   80 (339)
Q Consensus         1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~   80 (339)
                      |+++|.||+++.++|++||++|++|++.||||+++|++++|+++||++++||+|+++|++|+++.++|+|++++.++.+.
T Consensus        95 M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~~~mael~Gk~~g~~~  174 (433)
T PLN02374         95 MVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR  174 (433)
T ss_pred             HHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHHHHHHHHcCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523           81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI  160 (339)
Q Consensus        81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv  160 (339)
                      |++|++|+.++++++.+.+++||+++|.|+|+|+|.|+++...+..+++++|||++|||++++|.|+|+||+|+.|+|||
T Consensus       175 GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPv  254 (433)
T PLN02374        175 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPI  254 (433)
T ss_pred             CCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCE
Confidence            99999999999999999999999999999999999998764333334688999999999999999999999999999999


Q ss_pred             EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523          161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD  240 (339)
Q Consensus       161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D  240 (339)
                      ||||+||+|+++++...+...+++++++++||+++++|||+|+++|++++++|++++|++++|+|||+.|||++||+++|
T Consensus       255 IfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~LIe~~tyR~~GHs~~D  334 (433)
T PLN02374        255 VFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD  334 (433)
T ss_pred             EEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEecCCcCCCC
Confidence            99999999999998887777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCCCCCC
Q 019523          241 PDELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKGFGIG  320 (339)
Q Consensus       241 ~~~yr~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~~~~~  320 (339)
                      ++.||+++|+++|.++|||.+|+++|++.|++|++++++|+++++++|++++++|+++|.|+++++|++||++++.++|.
T Consensus       335 ~~~YR~~~e~~~~~~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~~~~~~~vy~~~~~~~~~  414 (433)
T PLN02374        335 PDELRDPAEKAHYAARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPRSQLLENVFADPKGFGIG  414 (433)
T ss_pred             ccccCCHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhccccCCcCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCccccCCCC
Q 019523          321 PDGRYRCEDPKFTEGTAHV  339 (339)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~  339 (339)
                      ||++|||+|||||.||++|
T Consensus       415 ~~~~~~~~~~~~~~~~~~~  433 (433)
T PLN02374        415 PDGRYRCEDPKFTAGTAQV  433 (433)
T ss_pred             CCcceeccCCCcccccccC
Confidence            9999999999999999987

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion] Back     alignment and domain information
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex Back     alignment and domain information
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O Back     alignment and domain information
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E Back     alignment and domain information
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>PRK06163 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Back     alignment and domain information
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>COG3962 Acetolactate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3960 Glyoxylate carboligase [General function prediction only] Back     alignment and domain information
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion] Back     alignment and domain information
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3exe_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-50
3exf_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 3e-50
2ozl_A365 Human Pyruvate Dehydrogenase S264e Variant Length = 4e-50
3exi_A382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 5e-50
3exh_C382 Crystal Structure Of The Pyruvate Dehydrogenase (E1 1e-49
1ni4_A365 Human Pyruvate Dehydrogenase Length = 365 4e-46
1um9_A367 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 4e-39
3duf_A369 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 1e-27
1w85_A368 The Crystal Structure Of Pyruvate Dehydrogenase E1 1e-27
1w88_A368 The Crystal Structure Of Pyruvate Dehydrogenase E1( 2e-27
3dva_A369 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 6e-27
2j9f_A400 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 5e-22
1dtw_A400 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 5e-21
2bp7_A410 New Crystal Form Of The Pseudomonas Putida Branched 5e-21
2bff_A400 Reactivity Modulation Of Human Branched-Chain Alpha 9e-21
1x7y_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-20
1x7z_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-20
1x7w_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-20
1x7x_A400 Crystal Structure Of The Human Mitochondrial Branch 1e-20
1x80_A400 Crystal Structure Of The Human Mitochondrial Branch 2e-20
1qs0_A407 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 3e-20
1v1m_A400 Crosstalk Between Cofactor Binding And The Phosphor 3e-20
1olu_A400 Roles Of His291-Alpha And His146-Beta' In The Reduc 6e-20
2bfe_A400 Reactivity Modulation Of Human Branched-Chain Alpha 7e-20
2bfb_A400 Reactivity Modulation Of Human Branched-Chain Alpha 8e-20
1v16_A400 Crosstalk Between Cofactor Binding And The Phosphor 9e-20
2bfc_A400 Reactivity Modulation Of Human Branched-Chain Alpha 3e-19
1v11_A400 Crosstalk Between Cofactor Binding And The Phosphor 5e-19
2bfd_A400 Reactivity Modulation Of Human Branched-Chain Alpha 1e-18
3ooy_A 616 Crystal Structure Of Human Transketolase (Tkt) Leng 4e-04
3mos_A 616 The Structure Of Human Transketolase Length = 616 4e-04
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure 
Iteration: 1

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 172/318 (54%), Gaps = 15/318 (4%)
Query: 5   RSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA 64
           R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++G+  
Sbjct: 64  RRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV 123
Query: 65  RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLK 124
           R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P+  G A   KY  +   
Sbjct: 124 REILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNGK--- 178
Query: 125 EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI 184
               D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN + +G S  RA +    
Sbjct: 179 ----DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDY 234
Query: 185 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD-- 242
           YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E +TYR+ GHS++DP   
Sbjct: 235 YKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVS 292
Query: 243 -ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIXXXXXXXXXXXXXXXPP 301
              R+  ++ R +  DPI  LK  ++ S+LAS  ELK I+ ++                P
Sbjct: 293 YRTREEIQEVR-SKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEP 351
Query: 302 PRSQLLENVFADPKGFGI 319
           P  +L  ++++    F +
Sbjct: 352 PLEELGYHIYSSDPPFEV 369
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365 Back     alignment and structure
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382 Back     alignment and structure
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382 Back     alignment and structure
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365 Back     alignment and structure
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367 Back     alignment and structure
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 Back     alignment and structure
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 Back     alignment and structure
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368 Back     alignment and structure
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369 Back     alignment and structure
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400 Back     alignment and structure
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410 Back     alignment and structure
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407 Back     alignment and structure
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400 Back     alignment and structure
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400 Back     alignment and structure
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400 Back     alignment and structure
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616 Back     alignment and structure
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 1e-168
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 1e-136
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 1e-106
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 1e-105
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 1e-102
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 5e-05
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 4e-04
3lq1_A578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 6e-04
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365 Back     alignment and structure
 Score =  471 bits (1214), Expect = e-168
 Identities = 122/321 (38%), Positives = 177/321 (55%), Gaps = 13/321 (4%)

Query: 1   MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSK 60
           M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++
Sbjct: 43  MQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTR 102

Query: 61  GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRR 120
           G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P+  G A   KY  
Sbjct: 103 GLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYNG 160

Query: 121 EVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 180
           +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN + +G S  RA +
Sbjct: 161 K-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAA 213

Query: 181 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240
               YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E +TYR+ GH ++D
Sbjct: 214 STDYYKRG--DFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSD 271

Query: 241 PDEL-RDPAEKARY-AARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADES 298
           P    R   E     +  DPI  LK  ++ S+LAS  ELK I+ ++ + +EDA +FA   
Sbjct: 272 PGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATAD 331

Query: 299 APPPRSQLLENVFADPKGFGI 319
             PP  +L  ++++    F +
Sbjct: 332 PEPPLEELGYHIYSSDPPFEV 352
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367 Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368 Back     alignment and structure
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400 Back     alignment and structure
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407 Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528 Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 100.0
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 100.0
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 100.0
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 100.0
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 100.0
2yic_A 868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2jgd_A 933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
2o1s_A 621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 99.96
2o1x_A 629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 99.95
1gpu_A 680 Transketolase; transferase(ketone residues); HET: 99.94
2e6k_A 651 Transketolase; structural genomics, NPPSFA, nation 99.94
1r9j_A 673 Transketolase; domains, EACH of the alpha/beta typ 99.93
3rim_A 700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 99.93
2r8o_A 669 Transketolase 1, TK 1; reaction intermediate, calc 99.93
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 99.92
1itz_A 675 Transketolase; calvin cycle, cofactor, thiamine py 99.91
3l84_A 632 Transketolase; TKT, structural genomics, center fo 99.91
3uk1_A 711 Transketolase; structural genomics, seattle struct 99.91
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 99.9
3kom_A 663 Transketolase; rossmann fold, csgid, transferase, 99.9
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 99.9
2qtc_A 886 Pyruvate dehydrogenase E1 component; thiamin dipho 99.88
1v5e_A590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 99.8
2pan_A616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 99.79
1ozh_A566 ALS, acetolactate synthase, catabolic; acetohydrox 99.78
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 99.78
2pgn_A589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 99.77
1ybh_A590 Acetolactate synthase, chloroplast; acetohydroxyac 99.76
2uz1_A563 Benzaldehyde lyase; thiamine diphosphate, thiamine 99.76
3eya_A549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 99.76
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 99.75
2iht_A573 Carboxyethylarginine synthase; thiamin diphosphate 99.75
1ovm_A552 Indole-3-pyruvate decarboxylase; thiamine diphosph 99.75
2vbf_A570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 99.74
2vk8_A563 Pyruvate decarboxylase isozyme 1; asymmetric activ 99.74
2wvg_A568 PDC, pyruvate decarboxylase; thiamine diphosphate, 99.73
2vbi_A566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 99.73
2nxw_A565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 99.73
2c31_A568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 99.73
2q28_A564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 99.72
2x7j_A604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 99.7
3hww_A556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 99.7
3lq1_A578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 99.62
3ahc_A 845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 99.55
2c42_A1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 99.45
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 94.03
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 93.92
2uz1_A 563 Benzaldehyde lyase; thiamine diphosphate, thiamine 93.76
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 93.69
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 93.54
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 93.46
2vbi_A 566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 93.31
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 93.25
2wvg_A 568 PDC, pyruvate decarboxylase; thiamine diphosphate, 93.08
2nxw_A 565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 92.91
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 92.86
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 92.8
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 92.2
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 91.72
1q6z_A 528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 91.5
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 90.84
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 90.16
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 90.07
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 90.04
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 89.48
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 89.01
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 88.83
1ovm_A 552 Indole-3-pyruvate decarboxylase; thiamine diphosph 88.37
2vbf_A 570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 88.23
2vk8_A 563 Pyruvate decarboxylase isozyme 1; asymmetric activ 88.0
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 87.77
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 87.16
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 86.84
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 86.63
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 86.59
3l84_A632 Transketolase; TKT, structural genomics, center fo 85.48
3hww_A 556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 84.57
1gpu_A680 Transketolase; transferase(ketone residues); HET: 84.45
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 84.31
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 84.14
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 83.82
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Back     alignment and structure
Probab=100.00  E-value=2.9e-70  Score=526.92  Aligned_cols=305  Identities=39%  Similarity=0.711  Sum_probs=288.6

Q ss_pred             CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCCCeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCCc
Q 019523            1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR   80 (339)
Q Consensus         1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~~   80 (339)
                      |+++|.||+++..+|+||++.||+|++.||||+++|++.+|+++|+|+++||+|++.+++|+++.++|.+++++..+.+.
T Consensus        43 M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~~~i~~e~~g~~~g~~~  122 (365)
T 2ozl_A           43 MQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAK  122 (365)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHTTCTTSTTT
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCHHHHHHHHcCCCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCCE
Q 019523           81 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPI  160 (339)
Q Consensus        81 g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lpv  160 (339)
                      |++|++|+++  .++.+++|+||+++|+|+|+|+|.+++       +++++|||++|||++++|.++|+|++|+.|+||+
T Consensus       123 g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~-------~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpv  193 (365)
T 2ozl_A          123 GKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYN-------GKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPC  193 (365)
T ss_dssp             TSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCE
T ss_pred             CCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhc-------CCCceEEEEECchhhhccHHHHHHHHHHHHCcCE
Confidence            9999999964  477888899999999999999998877       4788999999999999999999999999999999


Q ss_pred             EEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCCC
Q 019523          161 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD  240 (339)
Q Consensus       161 i~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~D  240 (339)
                      ||||+||+|+++++...+...+++.+  +++|+++++|||+|+++|++++++|+++++++++|+|||+.|||..||+++|
T Consensus       194 i~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D  271 (365)
T 2ozl_A          194 IFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSD  271 (365)
T ss_dssp             EEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTC
T ss_pred             EEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCC
Confidence            99999999999987666656677876  6899999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCCHHHHHHHhh-CChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCC
Q 019523          241 PD-ELRDPAEKARYAA-RDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKG  316 (339)
Q Consensus       241 ~~-~yr~~~e~~~~~~-~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~  316 (339)
                      ++ .||+++|++.|++ +||+.+|+++|+++|+++++++++|+++++++|++++++|+++|.|+++++|++||+++++
T Consensus       272 ~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~~  349 (365)
T 2ozl_A          272 PGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPP  349 (365)
T ss_dssp             CSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCSSSSSCCC
T ss_pred             CCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhcCCCCh
Confidence            75 6999999999985 7999999999999999999999999999999999999999999999999999999987655
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Back     alignment and structure
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 339
d2ozla1361 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de 8e-71
d1umda_362 c.36.1.11 (A:) Branched-chain alpha-keto acid dehy 3e-66
d1qs0a_407 c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B 4e-64
d1w85a_365 c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd 1e-63
d2bfda1395 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid 2e-60
d1q6za3183 c.36.1.9 (A:342-524) Benzoylformate decarboxylase 3e-06
d2ieaa2415 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com 2e-05
d2djia3229 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus 0.002
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  222 bits (566), Expect = 8e-71
 Identities = 113/316 (35%), Positives = 164/316 (51%), Gaps = 13/316 (4%)

Query: 1   MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSK 60
           M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +++ YR H    ++
Sbjct: 39  MQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTR 98

Query: 61  GVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRR 120
           G+  R +++EL G+  GC +  G    M     N  GG   +G  +P+  G A   KY  
Sbjct: 99  GLSVREILAELTGRKGGCAK--GKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNG 156

Query: 121 EVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS 180
           +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN + +G S  RA +
Sbjct: 157 K-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAA 209

Query: 181 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD 240
               YK      +PG  VDGMD+L VRE  + A    R G+GP L+E +TYR+ GH ++D
Sbjct: 210 STDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSD 267

Query: 241 PDELRDPAE--KARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADES 298
           P       E  +   +  DPI  LK  ++ S+LAS  ELK I+ ++ + +EDA +FA   
Sbjct: 268 PGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATAD 327

Query: 299 APPPRSQLLENVFADP 314
             PP  +L  ++++  
Sbjct: 328 PEPPLEELGYHIYSSD 343
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362 Back     information, alignment and structure
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407 Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365 Back     information, alignment and structure
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395 Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 183 Back     information, alignment and structure
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415 Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d1umda_362 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d1qs0a_407 2-oxoisovalerate dehydrogenase (E1B), PP module {P 100.0
d2bfda1395 Branched-chain alpha-keto acid dehydrogenase, PP m 100.0
d2ozla1361 E1-beta subunit of pyruvate dehydrogenase (PP modu 100.0
d1w85a_365 Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st 100.0
d2djia3229 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 99.92
d2ez9a3228 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 99.92
d1ybha3208 Acetohydroxyacid synthase catalytic subunit {Thale 99.9
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 99.88
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 99.88
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 99.87
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 99.87
d1r9ja2336 Transketolase (TK), PP module {Leishmania mexicana 99.85
d2r8oa2331 Transketolase (TK), PP module {Escherichia coli [T 99.85
d1ovma3196 Indole-3-pyruvate decarboxylase {Enterobacter cloa 99.85
d1zpda3204 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 99.84
d1pvda3196 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 99.83
d1gpua1335 Transketolase (TK), PP module {Baker's yeast (Sacc 99.82
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 99.81
d1itza1338 Transketolase (TK), PP module {Maize (Zea mays) [T 99.81
d2ieaa2415 Pyruvate dehydrogenase E1 component, PP module {Es 99.65
d2c42a2447 Pyruvate-ferredoxin oxidoreductase, PFOR, domains 98.9
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 96.37
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 96.35
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.25
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 96.0
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 95.81
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 95.74
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 95.56
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 95.55
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 95.55
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 95.39
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 93.83
d1ovma2178 Indole-3-pyruvate decarboxylase {Enterobacter cloa 92.11
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 87.37
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 86.21
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 86.03
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 84.89
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 81.9
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 80.52
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.5e-77  Score=569.16  Aligned_cols=308  Identities=34%  Similarity=0.546  Sum_probs=300.0

Q ss_pred             CchhHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHccCCC-CeeeeCCCCcccccccCCCHHHHHHHhhCCCCCCC
Q 019523            1 MILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC   79 (339)
Q Consensus         1 m~~~R~~e~~~~~~~~~g~~~g~~~~~~G~Ea~~~~~~~~l~~~-D~i~~~~R~~~~~l~~g~~p~~~~~el~~~~~~~~   79 (339)
                      |+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++ ||+|++||+|+++|++|+++..+|++++++.++.+
T Consensus        40 M~~~R~~ee~~~~l~~~g~~-~~~~~~~GqEA~~vg~~~al~~~~D~~~~~yR~h~~~la~G~~~~~~~ae~~gk~~g~~  118 (362)
T d1umda_          40 MLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPN  118 (362)
T ss_dssp             HHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTT
T ss_pred             HHHHHHHHHHHHHHHHCCCc-ceeeCCCCHHHHHHHHHHHcCCCCCeEEeccccHHHHHHHHhhHHHHHHHHhcccCCCc
Confidence            89999999999999999999 89999999999999999999986 99999999999999999999999999999999999


Q ss_pred             cCCCCccccccCCCcccccccccccchHHHHHHHHHHHHhhhhhhccCCCcEEEEEeCCCCcccchHHHHHHHHHhCCCC
Q 019523           80 RGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP  159 (339)
Q Consensus        80 ~g~~G~~h~~~~~~~~~~~~g~lG~~~p~AiG~a~A~k~~~~~~~~~~~~~~vv~~~GDG~~~~g~~~eal~~A~~~~Lp  159 (339)
                      .|++|++|++++..++.+.++++|.++|.|+|+|++.|++       +.+.+++|++|||++++|.|||+||+|+.|+||
T Consensus       119 ~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~-------~~~~v~v~~~GDGa~~eG~f~Ealn~A~~~~lP  191 (362)
T d1umda_         119 KGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLL-------RTGQVAVCTFGDGATSEGDWYAGINFAAVQGAP  191 (362)
T ss_dssp             TTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHT-------TCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCS
T ss_pred             ccccccccccccccCcccccccccccchHHHHHHHhhhcc-------cccceeeeeccCCcccCCchHHHHHHhhhccCC
Confidence            9999999999999999999999999999999999999988       468899999999999999999999999999999


Q ss_pred             EEEEEEcCCeeecccccccccChhhhhhcccCCCcEEEecCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeeCCCCCCC
Q 019523          160 IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  239 (339)
Q Consensus       160 vi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~gP~lIev~t~r~~gh~~~  239 (339)
                      |||||+||+|+++++...+.+.+++.+++.+||+++++|||+|+++|++++++|++++|+++||+|||+.|||..||+.+
T Consensus       192 vifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~  271 (362)
T d1umda_         192 AVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSA  271 (362)
T ss_dssp             EEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTT
T ss_pred             eeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHHHHHHHHHHhcCCCEEEEcccccccCCCcc
Confidence            99999999999999999888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCHHHHHHHhhCChHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhhhCCCCChhhhhhcccCCCCC
Q 019523          240 DPD-ELRDPAEKARYAARDPITALKKYLIESSLASEAELKAIEKKIDEVVEDAVEFADESAPPPRSQLLENVFADPKG  316 (339)
Q Consensus       240 D~~-~yr~~~e~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v~~~~~~  316 (339)
                      |++ .||+++|++.|+++|||.+++++|++.|+++++++++|+++++++|++++++|+++|.|++++++++||+++++
T Consensus       272 Dd~~~YR~~~Ei~~w~~~DPi~~~~~~L~~~g~~se~e~~~i~~ei~~~V~~a~~~A~~~p~P~~~~l~~~VY~~~~~  349 (362)
T d1umda_         272 DDDSRYRPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPW  349 (362)
T ss_dssp             CCGGGTSCHHHHHHHHTTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCBCCGGGGGTTSSSSCCH
T ss_pred             ccchhhcchhhhHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhcccCCCCh
Confidence            875 69999999999999999999999999999999999999999999999999999999999999999999999875
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure