Citrus Sinensis ID: 019526

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL
ccccEEEEEEEEEEcccEEEccccccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccc
cccccEEEEEEEEccccEEcHHHHccHHHEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEEEcccHHHHHHHHHHHccHccccHcccHEHHHHHHEHEHccccccccccHHHHccccccHHHHccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccHHHHHHc
MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIrgsggssfgIIVSWKIKlvavpptvtvfavPRTLEQNATRLLHKWQYIADRvhedlfispflyrenstMVCLFTSlflggvdrllplmqqsfpelgltkedcreMSFIESIVYLdgfkiresinadVLINERFVKRFfigkadfvtvpipvealegaydlfyeedprtygllvffpyggkmseiseseipfphragnIYTLLYYAEWQDATDEAYQRHLNMVRKLFNymtpyvtknpraayinnrdldigtnnklghtsVQEASVWGKKYFKNNFYRLVQVKTmvdpedffrneqsippfnlmkdel
maadhivdahmidakgrfLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEdffrneqsippfnlmkdel
MAADHIVDAHMIDAKGRFLTRESMGEDLFWAirgsggssfgiivsWKIKLvavpptvtvfavpRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL
*****IVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFF****************
MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPF*******
MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL
MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMK*EL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.970 0.603 0.472 3e-87
A6P6V9544 Cannabidiolic acid syntha N/A no 0.967 0.602 0.478 3e-87
A6P6W1545 Cannabidiolic acid syntha N/A no 0.976 0.607 0.463 9e-87
A6P6W0545 Cannabidiolic acid syntha N/A no 0.976 0.607 0.461 3e-86
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.970 0.603 0.463 1e-85
Q9SVG4570 Reticuline oxidase-like p no no 0.958 0.570 0.4 1e-65
P93479535 Reticuline oxidase OS=Pap N/A no 0.958 0.607 0.389 2e-62
P30986538 Reticuline oxidase OS=Esc N/A no 0.958 0.604 0.380 2e-59
O06997447 Uncharacterized FAD-linke yes no 0.876 0.664 0.289 3e-19
P08159458 6-hydroxy-D-nicotine oxid N/A no 0.852 0.631 0.234 1e-07
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 163/345 (47%), Positives = 225/345 (65%), Gaps = 16/345 (4%)

Query: 1   MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVF 60
           +AAD+I+DAH+++  G+ L R+SMGEDLFWAIRG GG +FGII +WKIKLVAVP   T+F
Sbjct: 199 LAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIF 258

Query: 61  AVPRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYREN---------STMVCLFTSLFL 110
           +V + +E     +L +KWQ IA +  +DL +      +N         +T+   F+S+F 
Sbjct: 259 SVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFH 318

Query: 111 GGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESIN--ADVLINERFVKR 168
           GGVD L+ LM +SFPELG+ K DC+E S+I++ ++  G     + N   ++L++    K+
Sbjct: 319 GGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKK 378

Query: 169 F-FIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRA 227
             F  K D+V  PIP  A+    +  YEED    G+ V +PYGG M EISES IPFPHRA
Sbjct: 379 TAFSIKLDYVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRA 437

Query: 228 GNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKL 287
           G +Y L Y A W+   D   ++H+N VR ++N+ TPYV++NPR AY+N RDLD+G  N  
Sbjct: 438 GIMYELWYTASWEKQEDN--EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHA 495

Query: 288 GHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPF 332
              +  +A +WG+KYF  NF RLV+VKT VDP +FFRNEQSIPP 
Sbjct: 496 SPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 540
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
224115242 527 predicted protein [Populus trichocarpa] 0.973 0.626 0.590 1e-116
224122382 534 predicted protein [Populus trichocarpa] 0.973 0.617 0.574 1e-115
358348153 543 Reticuline oxidase [Medicago truncatula] 0.964 0.602 0.589 1e-110
358348161 545 Reticuline oxidase-like protein [Medicag 0.985 0.612 0.560 1e-110
356510754 538 PREDICTED: reticuline oxidase-like prote 0.964 0.607 0.581 1e-109
224056831 533 predicted protein [Populus trichocarpa] 0.970 0.617 0.574 1e-109
224110866 533 predicted protein [Populus trichocarpa] 0.976 0.621 0.572 1e-109
224122386 533 predicted protein [Populus trichocarpa] 0.970 0.617 0.574 1e-109
224103509 531 predicted protein [Populus trichocarpa] 0.970 0.619 0.588 1e-109
224108830 533 predicted protein [Populus trichocarpa] 0.976 0.621 0.572 1e-108
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/342 (59%), Positives = 261/342 (76%), Gaps = 12/342 (3%)

Query: 1   MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVF 60
           +AADHI+DA ++D KGR L RESMGEDLFWAIRG GG++FG++++WKI LV+ PPTVTVF
Sbjct: 187 LAADHIIDAQLVDVKGRILDRESMGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVF 246

Query: 61  AVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENST--------MVCLFTSLFLGG 112
            V RTLEQNA++L+H+WQ++AD++HEDLFI   L R NST        +   F SLFLGG
Sbjct: 247 NVQRTLEQNASKLVHRWQFVADKLHEDLFIRIILNRVNSTEEGKSNTTIQASFNSLFLGG 306

Query: 113 VDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINER-FVKRFFI 171
           +DRLLPL+Q SFPELGL KEDC EMS+I+S++Y DGF    S+  DVL++     +R F 
Sbjct: 307 IDRLLPLIQDSFPELGLVKEDCIEMSWIQSVLYFDGFPSNSSL--DVLLDRTPSTRRNFK 364

Query: 172 GKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIY 231
            K+D+V  PIP   LEG ++ F+++D  T  +L+F PYGGKMSEISES IPFPHRAGNIY
Sbjct: 365 AKSDYVKEPIPELGLEGIWERFFDKDINT-PILIFSPYGGKMSEISESSIPFPHRAGNIY 423

Query: 232 TLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTS 291
            + +   W +    A +RH++ +R+L++Y+ PYV+K PRAAY+N RDLDIG NN  G+TS
Sbjct: 424 KIQHLIYWDEEGIVATKRHISWIRRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTS 483

Query: 292 VQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFN 333
            ++AS+WG KYFKNNF RLV+VKT VDP +FFRNEQSIPP +
Sbjct: 484 YRQASIWGLKYFKNNFDRLVRVKTAVDPANFFRNEQSIPPLS 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|358348161|ref|XP_003638117.1| Reticuline oxidase-like protein [Medicago truncatula] gi|355504052|gb|AES85255.1| Reticuline oxidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356510754|ref|XP_003524099.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.943 0.601 0.454 1.5e-74
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.961 0.607 0.439 8.4e-74
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.973 0.619 0.445 9.6e-73
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.961 0.601 0.433 2.5e-72
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.941 0.597 0.434 1.4e-71
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.973 0.616 0.436 2.3e-71
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.955 0.611 0.427 7.7e-71
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.964 0.604 0.425 1.4e-69
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.970 0.618 0.422 2.4e-69
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.958 0.610 0.414 2.1e-68
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 153/337 (45%), Positives = 215/337 (63%)

Query:     1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
             + AD+++DA ++DA G+ L R +MGED+FWA              WKIKL          
Sbjct:   202 LGADNVLDARIVDANGQILDRAAMGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVF 261

Query:    61 XXXRTLEQNATRLLHKWQYIADRVHEDLFI----SPFLYRE---NSTMVCLFTSLFLGGV 113
                +TLEQ+ T++L+KW+ IAD++ +DLFI    SP        N T+   + + FLG  
Sbjct:   262 TVTKTLEQDGTKVLYKWEQIADKLDDDLFIRVIISPASKTTKPGNRTISMSYQAQFLGDS 321

Query:   114 DRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGK 173
             +RLL +MQ+SFPELGLTK+DC EMS+I+S++Y+ GF    +  A +L  +   K  F  K
Sbjct:   322 NRLLQVMQKSFPELGLTKKDCTEMSWIKSVMYIAGFPNSAAPEA-LLAGKSLFKNHFKAK 380

Query:   174 ADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTL 233
             +DFV  PIPVE LEG ++ F EED     L ++ PYGG MS ISESEIPFPHR G ++ +
Sbjct:   381 SDFVKEPIPVEGLEGLWERFLEEDSP---LTIWNPYGGMMSRISESEIPFPHRNGTLFKI 437

Query:   234 LYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQ 293
              + + WQD    + +RH+  +R++++YM  YV+KNPR AY+N RDLD+GTN   G T  +
Sbjct:   438 QWLSTWQDGK-VSEERHMKWIREMYSYMEQYVSKNPRQAYVNYRDLDLGTNE--GETDAR 494

Query:   294 EASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIP 330
             E   WG KY+K NF RLV++K   DP++FFR+EQS+P
Sbjct:   495 E---WGAKYYKGNFERLVKIKGEFDPDNFFRHEQSVP 528
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0010197 "polar nucleus fusion" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
pfam0803145 pfam08031, BBE, Berberine and berberine like 9e-16
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 9e-06
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information 
 Score = 69.9 bits (172), Expect = 9e-16
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 14/59 (23%)

Query: 272 AYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIP 330
           AY+N  DLD+G               WG+ YF  N+ RL +VK   DP++ FRNEQSIP
Sbjct: 1   AYVNYPDLDLG--------------DWGEAYFGGNYERLRKVKAKYDPDNVFRNEQSIP 45

This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. Length = 45
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
PLN02441525 cytokinin dehydrogenase 99.89
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.62
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.61
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 99.43
PLN02805555 D-lactate dehydrogenase [cytochrome] 99.4
KOG1231505 consensus Proteins containing the FAD binding doma 99.38
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 99.25
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.22
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 99.2
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.08
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.0
PLN02465573 L-galactono-1,4-lactone dehydrogenase 98.93
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 98.8
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.14
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 97.64
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 97.29
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 96.5
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 96.16
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 94.34
KOG1232511 consensus Proteins containing the FAD binding doma 93.8
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 93.62
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 93.16
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 92.56
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 90.28
PRK11183564 D-lactate dehydrogenase; Provisional 89.99
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 86.58
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 85.55
PLN00107257 FAD-dependent oxidoreductase; Provisional 81.21
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 80.96
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=99.89  E-value=4.1e-21  Score=186.55  Aligned_cols=293  Identities=13%  Similarity=0.176  Sum_probs=156.3

Q ss_pred             ccceEEEEEEEcCCCcEE-ecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEeccchHHHHHHHHHHHHH
Q 019526            2 AADHIVDAHMIDAKGRFL-TRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYI   80 (339)
Q Consensus         2 a~D~vl~~~VV~adG~iv-~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~   80 (339)
                      .+|||++++|||+||+++ .++++|||||||+|||+ |+|||||++++|++|+|+........|..   ..++++....+
T Consensus       190 ~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Ggl-G~fGIIT~atlrL~Pap~~v~~~~~~y~~---~~~~~~d~~~l  265 (525)
T PLN02441        190 QISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGGL-GQFGIITRARIALEPAPKRVRWIRVLYSD---FSTFTRDQERL  265 (525)
T ss_pred             HHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccCC-CCcEEEEEEEEEEEecCCceEEEEEEcCC---HHHHHHHHHHH
Confidence            579999999999999999 68889999999999996 89999999999999999865443444432   22333333332


Q ss_pred             hccC-C---CCceEEEEEe--------------e----------cCCc--eEEEEEEEEEcCcc-chhhHHhhhccCCCC
Q 019526           81 ADRV-H---EDLFISPFLY--------------R----------ENST--MVCLFTSLFLGGVD-RLLPLMQQSFPELGL  129 (339)
Q Consensus        81 ~~~~-~---~~~~~~~~~~--------------~----------~~~~--~~~~~~~~~~G~~~-~~~~~~~~~~~~l~~  129 (339)
                      .... +   +-+...++..              +          ..+.  ..+.+...|+.+.+ .....++.++..|+.
T Consensus       266 i~~~~~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~  345 (525)
T PLN02441        266 ISRPPENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSF  345 (525)
T ss_pred             HhcCCCCCcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhhcCC
Confidence            2100 0   0111111100              0          0011  12333444544322 122223333333331


Q ss_pred             C--ccceeeecHHHHHHhhhcccCccccccccccccccc-ccceeEeeccccCCCCHHHHHHHHHHHhc-CC-CCceeEE
Q 019526          130 T--KEDCREMSFIESIVYLDGFKIRESINADVLINERFV-KRFFIGKADFVTVPIPVEALEGAYDLFYE-ED-PRTYGLL  204 (339)
Q Consensus       130 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~  204 (339)
                      .  ...+.+++|.+.+..+..   .     +..+...+. ...+.+-+.|    ++...+.+..+.+.+ .. ......+
T Consensus       346 ~~~~~~~~d~~y~~fl~rv~~---~-----e~~lr~~G~W~~phPWlnlf----vp~s~i~~f~~~v~~~i~~~~~~G~~  413 (525)
T PLN02441        346 IPGLLFTTDVSYVDFLDRVHV---E-----ELKLRSKGLWEVPHPWLNLF----VPKSRIADFDDGVFKGILLDGTNGPI  413 (525)
T ss_pred             CCCCceecccCHHHHHHhhhh---H-----HHHHhhcCCcCCCCchhhee----CcHHHHHHHHHHHHhhcccccCCCeE
Confidence            1  235577788885433321   1     101100000 1122334455    344555544443322 11 1123567


Q ss_pred             EEEecCccccCCCCCCCC--CcCcCCceEEEEEEEEecCCChHHHHHHHHHHHHHHHcccccccCCCCccccccCCCCCC
Q 019526          205 VFFPYGGKMSEISESEIP--FPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG  282 (339)
Q Consensus       205 ~~~~~gg~~~~~~~~~ta--f~~R~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~n~~d~~~~  282 (339)
                      .+.|+...   +-.+.++  .|.-+ ..|.+.+...- .+..+..+++.+-.++++..-....  .....|+...   . 
T Consensus       414 liyP~~~~---~~~~~~s~~~P~~~-~~y~v~~l~~~-~p~~~~~~~~~~~n~~i~~~~~~~g--~~~k~Yl~~~---~-  482 (525)
T PLN02441        414 LVYPLNRS---KWDNRTSAVIPDED-IFYLVALLRSA-LPSGDDLEHLLAQNKEILRFCEKAG--IGVKQYLPHY---T-  482 (525)
T ss_pred             EEEecccc---cCCCCCccccCCCC-eEEEEEEcCCC-CCCcccHHHHHHHHHHHHHHHHHcC--CceEEcCCCC---C-
Confidence            77777522   1122232  24333 44555444322 1121233566666666665433221  0123455322   1 


Q ss_pred             CCCCCCCcchhhhcccccccccccHHHHHHhHhhcCCCCCCcCCCCCCCCC
Q 019526          283 TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFN  333 (339)
Q Consensus       283 ~~~~~~~~s~~~~~~~~~~y~g~n~~rL~~lK~kyDP~~vF~~~~~i~~~~  333 (339)
                                 .+++|++ .||.+|+|..+.|++|||.+++...|.|....
T Consensus       483 -----------~~~~W~~-HfG~~w~~f~~~K~~yDP~~iL~pgq~if~~~  521 (525)
T PLN02441        483 -----------TQEEWKR-HFGPKWETFVRRKAKFDPLAILSPGQRIFNRA  521 (525)
T ss_pred             -----------CHHHHHH-HhcchHHHHHHHHhhCCchhhcCCCCccCCCC
Confidence                       1358974 78999999999999999999999999998643

>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 5e-75
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 2e-60
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 2e-57
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-52
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 4e-52
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-52
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 4e-52
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 4e-52
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 5e-52
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-52
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 6e-08
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 2e-06
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 4e-06
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 7e-05
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  277 bits (709), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 147/345 (42%), Positives = 205/345 (59%), Gaps = 16/345 (4%)
Query: 1   MAADHIVDAHMIDAKGRFLTRESMGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXX 60
           +AAD+I+DAH+++  G+ L R+SMGEDLFWA              WKIKL          
Sbjct: 172 LAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIF 231
Query: 61  XXXRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYREN---------STMVCLFTSLFL 110
              + +E     +L +KWQ IA +  +DL +      +N         +T+   F+S+F 
Sbjct: 232 SVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFH 291
Query: 111 GGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESIN--ADVLINERFVKR 168
           GGVD L+ LM +SFPELG+ K DC+E S+I++ ++  G     + N   ++L++    K+
Sbjct: 292 GGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKK 351
Query: 169 F-FIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRA 227
             F  K D+V  PIP  A+    +  YEED    G+ V +PYGG M EISES IPFPHRA
Sbjct: 352 TAFSIKLDYVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRA 410
Query: 228 GNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKL 287
           G +Y L Y A W+   D   ++H+N VR ++N+ TPYV++NPR AY+N RDLD+G  N  
Sbjct: 411 GIMYELWYTASWEKQEDN--EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHA 468
Query: 288 GHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPF 332
              +  +A +WG+KYF  NF RLV+VKT VDP +FFRNEQSIPP 
Sbjct: 469 SPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-119
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-118
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-101
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-100
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 5e-96
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-93
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-93
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-89
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 2e-68
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 2e-17
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 2e-13
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 2e-04
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  352 bits (905), Expect = e-119
 Identities = 125/336 (37%), Positives = 188/336 (55%), Gaps = 11/336 (3%)

Query: 1   MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVF 60
           +AAD++VDA +IDA G  L R++MGED+FWAIRG GG  +G I +WKIKL+ VP  VTVF
Sbjct: 164 LAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVF 223

Query: 61  AVPRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPL 119
            V + +    AT LLHKWQ++A+ + ED  +S     +   +         G        
Sbjct: 224 RVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKST 283

Query: 120 MQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTV 179
               FPELGL +ED  EMS+ ES  YL G +    +N       +F +R F  K D    
Sbjct: 284 FDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNR---FLKFDERAFKTKVDLTKE 340

Query: 180 PIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEW 239
           P+P +A  G  +   +E     G +    +GG+MS+IS    PFPHR+G    + Y   W
Sbjct: 341 PLPSKAFYGLLERLSKEPN---GFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 397

Query: 240 QDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNN----KLGHTSVQEA 295
             +  +     L+ + K++ +M P+V+KNPR  Y+N+ DLD+G  +     + + +++ +
Sbjct: 398 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 457

Query: 296 SVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPP 331
             WG+ YF +N+ RL++ KT++DP + F + QSIPP
Sbjct: 458 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 493
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.86
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.65
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.61
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.39
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 99.33
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.17
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.07
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 98.89
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 98.76
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 98.49
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 98.49
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 98.35
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 98.26
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 98.05
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 97.68
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 97.66
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 97.66
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 91.19
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 85.74
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=3.1e-58  Score=448.81  Aligned_cols=329  Identities=50%  Similarity=0.927  Sum_probs=269.4

Q ss_pred             CccceEEEEEEEcCCCcEEecCCCCchhHHHHhhcCCCCeEEEEEEEEEeeecCCeEEEEEEeccch-HHHHHHHHHHHH
Q 019526            1 MAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLE-QNATRLLHKWQY   79 (339)
Q Consensus         1 la~D~vl~~~VV~adG~iv~~~~~n~DLfWAlRGgGg~nFGIVt~~~~k~~p~~~~~~~~~~~~~~~-~~~~~~l~~~~~   79 (339)
                      +++|+|++++|||+||+|++.+.+|+|||||+||||+|+|||||+++||++|.|+.++.|.+.+.++ +.+.+++.+|++
T Consensus       172 ~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~  251 (518)
T 3vte_A          172 LAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQN  251 (518)
T ss_dssp             CGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHH
T ss_pred             chhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHH
Confidence            5789999999999999999544579999999999866999999999999999998777777777654 568899999999


Q ss_pred             HhccCCCCceEEEEEeecC---------CceEEEEEEEEEcCccchhhHHhhhccCCCCCccceeeecHHHHHHhhhccc
Q 019526           80 IADRVHEDLFISPFLYREN---------STMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFK  150 (339)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  150 (339)
                      ++..+|+++++.+.+...+         +.+.+.+.++|.|+.+++.+.+++++++++....++.++||.+.+.+++++.
T Consensus       252 ~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~  331 (518)
T 3vte_A          252 IAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVV  331 (518)
T ss_dssp             HGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSC
T ss_pred             HHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCC
Confidence            9999999999988876421         2356788899999998988888887778876667889999999888877554


Q ss_pred             Cc-cc-cccccccccccc-ccceeEeeccccCCCCHHHHHHHHHHHhcCCCCceeEEEEEecCccccCCCCCCCCCcCcC
Q 019526          151 IR-ES-INADVLINERFV-KRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRA  227 (339)
Q Consensus       151 ~~-~~-~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~taf~~R~  227 (339)
                      .+ ++ +.++.+.++..+ ..+||.||.|+.++++++.++.+++.+.+.+.. .+.+.++++||++++++.++|||+||+
T Consensus       332 ~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~-~~~v~~~~~GGa~~~v~~~~TAf~hR~  410 (518)
T 3vte_A          332 NFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVG-AGMYVLYPYGGIMEEISESAIPFPHRA  410 (518)
T ss_dssp             CC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTT-TEEEEEEECCGGGGTSCTTSSSCCCCT
T ss_pred             ccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCC-CeEEEEeecCccccCCCCCCCcccccC
Confidence            32 11 001334333222 446788999998889999999999988765432 378999999999999999999999998


Q ss_pred             CceEEEEEEEEecCCChHHHHHHHHHHHHHHHcccccccCCCCccccccCCCCCC-CCCCCCCcchhhhccccccccccc
Q 019526          228 GNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIG-TNNKLGHTSVQEASVWGKKYFKNN  306 (339)
Q Consensus       228 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Y~n~~d~~~~-~~~~~~~~s~~~~~~~~~~y~g~n  306 (339)
                      +..|.+++.+.|.++..+  ++..+|+++++++|.|+.+..+.++|+||.|.+++ .+ +.+.++|+.+..|...|||+|
T Consensus       411 ~~~~~~~~~~~w~~~~~~--~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~-~~~~~~~~~~~~w~~~Yyg~N  487 (518)
T 3vte_A          411 GIMYELWYTASWEKQEDN--EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTN-HASPNNYTQARIWGEKYFGKN  487 (518)
T ss_dssp             TCCEEEEEEEEECCTTTH--HHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCC-TTSCCCHHHHHHHHHHHSSTH
T ss_pred             cceEEEEEEEecCCcchh--HHHHHHHHHHHHHhccccCCCCccccccCCCccccccc-cccccchhhhhhHHHHHhHhH
Confidence            558999999999876544  77899999999999998654457999999998776 32 124556777778999999999


Q ss_pred             HHHHHHhHhhcCCCCCCcCCCCCCCCC
Q 019526          307 FYRLVQVKTMVDPEDFFRNEQSIPPFN  333 (339)
Q Consensus       307 ~~rL~~lK~kyDP~~vF~~~~~i~~~~  333 (339)
                      |+||++||+||||+|||+++|+|+|..
T Consensus       488 ~~RL~~vK~~yDP~n~F~~~QsI~p~~  514 (518)
T 3vte_A          488 FNRLVKVKTKVDPNNFFRNEQSIPPLP  514 (518)
T ss_dssp             HHHHHHHHHHHCTTCCSCCTTCCCCCC
T ss_pred             HHHHHHHHhhcCchhcccCCCCCCCCC
Confidence            999999999999999999999999753
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 339
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 6e-07
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 47.2 bits (111), Expect = 6e-07
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1   MAADHIVDAHMIDAKGRFLT-RESMGEDLFWAIRGSGGSSFGIIVSWKIKLV 51
               ++++  +I   G  +T  + +  DLF A+ G  G  FG+I   +I + 
Sbjct: 154 PQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVE 204

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 97.15
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 95.64
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 94.15
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 93.99
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 89.72
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 84.97
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cytokinin dehydrogenase 1
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.15  E-value=0.00083  Score=57.47  Aligned_cols=35  Identities=29%  Similarity=0.496  Sum_probs=30.9

Q ss_pred             hcccccccccc-cHHHHHHhHhhcCCCCCCcCCCCCC
Q 019526          295 ASVWGKKYFKN-NFYRLVQVKTMVDPEDFFRNEQSIP  330 (339)
Q Consensus       295 ~~~~~~~y~g~-n~~rL~~lK~kyDP~~vF~~~~~i~  330 (339)
                      +++|.+ .||+ .+++.++.|++|||.+++.-.|.|.
T Consensus       253 ~~dW~~-HFG~~kW~~F~~~K~~yDP~~ILsPGQ~IF  288 (289)
T d1w1oa1         253 RSDWVR-HFGAAKWNRFVEMKNKYDPKRLLSPGQDIF  288 (289)
T ss_dssp             HHHHHH-HHCHHHHHHHHHHHHHHCTTCCBCGGGCSC
T ss_pred             HHHHHH-HcCcchHHHHHHHHhhCCcccccCCCCccC
Confidence            458975 6785 7999999999999999999999986
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure