Citrus Sinensis ID: 019532

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREGENERFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH
cccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccEEEEccccccccccccccHHHHHHHHccccEEEEEccccccccccEEEEEHHHHHHHHHHccccccccccccccHHHHcHHHHHcccccccccccccccccccEEEEccccccccccccccccEEEEEEEEEEEEEccccccEEEEccccccEEEEccc
ccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEcccccccHHHccccHHHHHHHHcccEEEEEEcccccccccccEEccHHHHHHHHHcccccccccEEEEHccHHHHHHHHHHHccccccccccccccccEEEEEccccccccccccccHcEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHcc
mdelltpimdeespRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEqlhsgpwhsvlpVWRDAYSMACLHGAkyhyrngefkEALRVLDMGVLMGGPVLRKDLDSAIETLSLKARegenerfgereANRLVSEEFNTAKalqvlpnrslsckLVVKRSALSLEGFLseyflsgspviitdcmahwpartnwndldylkrvagdrtvpvevgknylcqdwkqelipFSQFLERIqsngssasvptyLAQHQLFDQINELrndicipdycfvgggelrslnawfgpagtvtplhhdphhniLAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH
MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSlkaregenerfgereanrlvSEEFNtakalqvlpnrslsCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH
MDELLTPIMDEESPRLLQTISEHggyayvgmaaqaaadiraaeaardlaWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKaregenerfgereanrLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH
****************LQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIE**************************FNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVC*
**ELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSL*********************EFNTAKALQVLPNRSL**KLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH
MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREGENERFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH
***LLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREG***********************LQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH
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MDELLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAADIRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLxxxxxxxxxxxxxxxxxxxxxRFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRTSTFRRLWLNSLLLVFCYYVCH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query339 2.2.26 [Sep-21-2011]
Q9CXT6414 Lysine-specific demethyla yes no 0.772 0.632 0.389 5e-48
B5XF11404 Lysine-specific demethyla N/A no 0.758 0.636 0.384 9e-46
Q497B8414 Lysine-specific demethyla yes no 0.772 0.632 0.382 2e-45
Q8N371416 Lysine-specific demethyla yes no 0.764 0.622 0.387 4e-45
A8E534406 Lysine-specific demethyla yes no 0.784 0.655 0.383 1e-42
Q1JP61406 Lysine-specific demethyla yes no 0.802 0.669 0.381 1e-41
B2GUS6443 Lysine-specific demethyla yes no 0.831 0.636 0.343 2e-41
Q55DF5448 JmjC domain-containing pr yes no 0.421 0.319 0.471 6e-34
Q54FG7474 JmjC domain-containing pr no no 0.775 0.554 0.237 1e-15
Q67XX3 502 F-box protein At5g06550 O no no 0.371 0.250 0.276 6e-06
>sp|Q9CXT6|KDM8_MOUSE Lysine-specific demethylase 8 OS=Mus musculus GN=Kdm8 PE=2 SV=1 Back     alignment and function desciption
 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 108/277 (38%), Positives = 149/277 (53%), Gaps = 15/277 (5%)

Query: 39  IRAAEAARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGA----KYHYRNGEFKEALRVLD 94
           ++A+EA  D +WE+L++GPW  V   WR  YS  CL  A    +   +     EALRV D
Sbjct: 62  LQASEAVLDYSWEKLNTGPWRDVDKEWRRVYSFGCLLKALCLCQAPQKATTVVEALRVCD 121

Query: 95  MGVLMGGPVLRKDLDSAIETLSLKAREGENERFGEREANRLVSE-EFNTAKALQVLPNRS 153
           MG+LMG  +L   L   +  L      G+    G  +      + + + + A  V+  R 
Sbjct: 122 MGLLMGAAILEDILLKVVAVLQTHQLPGKQPARGPHQDQPATKKAKCDASPAPDVMLER- 180

Query: 154 LSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPV 213
               +V +     L+ F   + + G PVI+     HWP    W+ L Y++ +AG RTVPV
Sbjct: 181 ----MVPRLRCPPLQYFKQHFLVPGRPVILEGVADHWPCMKKWS-LQYIQEIAGCRTVPV 235

Query: 214 EVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYC 273
           EVG  Y  +DW Q L+   +F+++     S A    YLAQHQLFDQI EL+ DI IPDYC
Sbjct: 236 EVGSRYTDEDWSQTLMTVDEFIQKFIL--SEAKDVGYLAQHQLFDQIPELKRDISIPDYC 293

Query: 274 FVGGGELR--SLNAWFGPAGTVTPLHHDPHHNILAQV 308
            +G GE    ++NAWFGP GT++PLH DP  N L QV
Sbjct: 294 CLGNGEEEEITINAWFGPQGTISPLHQDPQQNFLVQV 330
Histone demethylase required for G2/M phase cell cycle progression. Specifically demethylates dimethylated 'Lys-36' (H3K36me2) of histone H3, an epigenetic repressive mark, thereby acting as a transcription activator. Regulates expression of CCNA1 (cyclin-A1).
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2EC: 7
>sp|B5XF11|KDM8_SALSA Lysine-specific demethylase 8 OS=Salmo salar GN=kdm8 PE=2 SV=1 Back     alignment and function description
>sp|Q497B8|KDM8_RAT Lysine-specific demethylase 8 OS=Rattus norvegicus GN=Kdm8 PE=2 SV=1 Back     alignment and function description
>sp|Q8N371|KDM8_HUMAN Lysine-specific demethylase 8 OS=Homo sapiens GN=KDM8 PE=1 SV=1 Back     alignment and function description
>sp|A8E534|KDM8_DANRE Lysine-specific demethylase 8 OS=Danio rerio GN=kdm8 PE=2 SV=1 Back     alignment and function description
>sp|Q1JP61|KDM8_BOVIN Lysine-specific demethylase 8 OS=Bos taurus GN=KDM8 PE=2 SV=1 Back     alignment and function description
>sp|B2GUS6|KDM8_XENTR Lysine-specific demethylase 8 OS=Xenopus tropicalis GN=kdm8 PE=2 SV=1 Back     alignment and function description
>sp|Q55DF5|JMJCD_DICDI JmjC domain-containing protein D OS=Dictyostelium discoideum GN=jcdD PE=4 SV=1 Back     alignment and function description
>sp|Q54FG7|JMJCF_DICDI JmjC domain-containing protein F OS=Dictyostelium discoideum GN=jcdF PE=4 SV=1 Back     alignment and function description
>sp|Q67XX3|FB252_ARATH F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
224057513413 predicted protein [Populus trichocarpa] 0.899 0.738 0.762 1e-132
255544780416 transcription factor, putative [Ricinus 0.905 0.737 0.739 1e-129
359478758411 PREDICTED: lysine-specific demethylase 8 0.896 0.739 0.704 1e-125
356541175 575 PREDICTED: lysine-specific demethylase 8 0.893 0.526 0.723 1e-125
356541868413 PREDICTED: lysine-specific demethylase 8 0.893 0.733 0.720 1e-120
18402759418 transcription factor jumonji (jmjC) doma 0.899 0.729 0.690 1e-119
297830774429 transcription factor jumonji domain-cont 0.899 0.710 0.676 1e-119
79313307398 transcription factor jumonji (jmjC) doma 0.899 0.766 0.690 1e-119
339896187414 jmjC domain-containing histone demethyla 0.890 0.729 0.681 1e-118
30685945429 transcription factor jumonji (jmjC) doma 0.899 0.710 0.669 1e-118
>gi|224057513|ref|XP_002299244.1| predicted protein [Populus trichocarpa] gi|222846502|gb|EEE84049.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/308 (76%), Positives = 268/308 (87%), Gaps = 3/308 (0%)

Query: 4   LLTPIMDEESPRLLQTISEHGGYAYVGMAAQAAA-DIRAAEAARDLAWEQLHSGPWHSVL 62
           L TP +D ES  LLQTIS HGGYAYV M+  AA+ D RAAEAAR++AWEQLHSGPWHSVL
Sbjct: 14  LTTPTLDAESSNLLQTISSHGGYAYVSMSTLAASGDFRAAEAAREMAWEQLHSGPWHSVL 73

Query: 63  PVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREG 122
           P WRDAYSMACLH AK+HYRNGEFKE+LRVLD+G++MGG +L+KDL+SAIE ++ K+RE 
Sbjct: 74  PAWRDAYSMACLHVAKFHYRNGEFKESLRVLDLGLIMGGVLLKKDLESAIEIVTAKSREK 133

Query: 123 ENERFGEREANRLVSE--EFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSP 180
           E+E F +    + V E  EF+  + L+VLP +SLS K+VVK+S LSLEGFL E+FLSGSP
Sbjct: 134 ESEGFEKGPKCKFVEEGDEFDKEEVLRVLPEKSLSSKIVVKKSGLSLEGFLREHFLSGSP 193

Query: 181 VIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQS 240
           VII+DCMAHWPART WND+DYLKRVAGDRTVPVEVGKNYLCQ+WKQELI FS+FLE+IQS
Sbjct: 194 VIISDCMAHWPARTKWNDMDYLKRVAGDRTVPVEVGKNYLCQEWKQELITFSEFLEKIQS 253

Query: 241 NGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWFGPAGTVTPLHHDP 300
           N SS++VPTYLAQHQLFDQINELR DICIPDYC  GGGELRSLNAWFGPAGTVTPLHHDP
Sbjct: 254 NDSSSAVPTYLAQHQLFDQINELRKDICIPDYCCAGGGELRSLNAWFGPAGTVTPLHHDP 313

Query: 301 HHNILAQV 308
           HHNILAQV
Sbjct: 314 HHNILAQV 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544780|ref|XP_002513451.1| transcription factor, putative [Ricinus communis] gi|223547359|gb|EEF48854.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359478758|ref|XP_003632166.1| PREDICTED: lysine-specific demethylase 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541175|ref|XP_003539056.1| PREDICTED: lysine-specific demethylase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|356541868|ref|XP_003539394.1| PREDICTED: lysine-specific demethylase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|18402759|ref|NP_566667.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|9294408|dbj|BAB02489.1| unnamed protein product [Arabidopsis thaliana] gi|21536708|gb|AAM61040.1| unknown [Arabidopsis thaliana] gi|332642905|gb|AEE76426.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297830774|ref|XP_002883269.1| transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329109|gb|EFH59528.1| transcription factor jumonji domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79313307|ref|NP_001030733.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|332642906|gb|AEE76427.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|339896187|gb|AEK21797.1| jmjC domain-containing histone demethylases [Brassica rapa subsp. campestris] Back     alignment and taxonomy information
>gi|30685945|ref|NP_850617.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] gi|20147203|gb|AAM10317.1| AT3g20810/MOE17_10 [Arabidopsis thaliana] gi|21928039|gb|AAM78048.1| AT3g20810/MOE17_10 [Arabidopsis thaliana] gi|332642904|gb|AEE76425.1| transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query339
TAIR|locus:2091861429 JMJD5 "AT3G20810" [Arabidopsis 0.899 0.710 0.607 1.2e-97
UNIPROTKB|F1NW34389 F1NW34 "Uncharacterized protei 0.415 0.362 0.510 2.3e-46
RGD|1304823414 Kdm8 "lysine (K)-specific deme 0.410 0.335 0.486 1.6e-43
UNIPROTKB|E2RER6414 KDM8 "Uncharacterized protein" 0.410 0.335 0.5 1.8e-42
UNIPROTKB|B2GUS6443 kdm8 "Lysine-specific demethyl 0.401 0.306 0.476 3.6e-42
MGI|MGI:1924285414 Kdm8 "lysine (K)-specific deme 0.740 0.606 0.383 8.4e-42
UNIPROTKB|F1RFF8414 KDM8 "Uncharacterized protein" 0.412 0.338 0.489 2e-41
ZFIN|ZDB-GENE-040718-411406 kdm8 "lysine (K)-specific deme 0.743 0.620 0.400 4.6e-41
UNIPROTKB|B5XF11404 kdm8 "Lysine-specific demethyl 0.740 0.621 0.391 7.5e-41
UNIPROTKB|Q8N371416 KDM8 "Lysine-specific demethyl 0.731 0.596 0.384 2.6e-40
TAIR|locus:2091861 JMJD5 "AT3G20810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
 Identities = 195/321 (60%), Positives = 222/321 (69%)

Query:     4 LLTPIMDEESPRLLQTIS-EHXXXXXXXXXXXXXXXXXXXXXXXXXXWEQLHSGPWHSVL 62
             L TP +D ES  LLQ+IS E                           WEQLHSGPWHSVL
Sbjct:    17 LPTPTLDAESQTLLQSISAEGGYAYARMAVLAVAGDQSAAEAARDMAWEQLHSGPWHSVL 76

Query:    63 PVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDL-DSA--IETLSLKX 119
             PVWRDAYSMACLH AK H+  GEF EAL  LDMG++MGG +LRKDL DS   + + + K 
Sbjct:    77 PVWRDAYSMACLHVAKIHFAAGEFGEALGALDMGLIMGGMLLRKDLHDSVLLVSSEARKM 136

Query:   120 XXXXXXXXXXXXXXXLVSE---EFNTAK---------ALQVLPNRSLSCKLVVKRSALSL 167
                            LV E   + N  +          L++LP RSL+CK V KRS LSL
Sbjct:   137 TKSLEEASGDFKGERLVPEVPVDVNEVRHVLANLQLLVLKILPCRSLTCKRVEKRSGLSL 196

Query:   168 EGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQE 227
             EGFL +Y+L G+PV+IT+ MAHWPART WN LDYL  VAG+RTVPVEVGKNYLC DWKQE
Sbjct:   197 EGFLRDYYLPGTPVVITNSMAHWPARTKWNHLDYLNAVAGNRTVPVEVGKNYLCSDWKQE 256

Query:   228 LIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGELRSLNAWF 287
             L+ FS+FLER+++N SS   PTYLAQH LFDQINELR+DICIPDYCFVGGGEL+SLNAWF
Sbjct:   257 LVTFSKFLERMRTNKSSPMEPTYLAQHPLFDQINELRDDICIPDYCFVGGGELQSLNAWF 316

Query:   288 GPAGTVTPLHHDPHHNILAQV 308
             GPAGTVTPLHHDPHHNILAQV
Sbjct:   317 GPAGTVTPLHHDPHHNILAQV 337
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0007623 "circadian rhythm" evidence=IMP
GO:0042752 "regulation of circadian rhythm" evidence=IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
UNIPROTKB|F1NW34 F1NW34 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1304823 Kdm8 "lysine (K)-specific demethylase 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RER6 KDM8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B2GUS6 kdm8 "Lysine-specific demethylase 8" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
MGI|MGI:1924285 Kdm8 "lysine (K)-specific demethylase 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFF8 KDM8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-411 kdm8 "lysine (K)-specific demethylase 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B5XF11 kdm8 "Lysine-specific demethylase 8" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N371 KDM8 "Lysine-specific demethylase 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024661001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (422 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00016024001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (208 aa)
  •   • 0.472

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
pfam13621247 pfam13621, Cupin_8, Cupin-like domain 2e-31
>gnl|CDD|222269 pfam13621, Cupin_8, Cupin-like domain Back     alignment and domain information 
 Score =  117 bits (296), Expect = 2e-31
 Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 170 FLSEYFLSGSPVIITDCMAHWPARTNWND-LDYLKRVAGDRTVPVEVGKN------YLCQ 222
           F  EY     PV++      WPA   W D LDYLK   GD  V VEV         +   
Sbjct: 4   FFREYVAKRKPVVLKGAAKDWPAVKKWTDALDYLKEKYGDVEVSVEVTPPGRADRFFYND 63

Query: 223 DW-----KQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQI-NELRNDICIPDYCFVG 276
           D      K+E +PF  FL+ +++     + P    Q    D     LR D  +P      
Sbjct: 64  DLSGVNFKEERMPFKDFLDLLRAGSDQETPPYLYLQSSNLDSEFPGLREDNDLPLAPEAF 123

Query: 277 GGELRSLNAWFGPAGTVTPLHHDPHHNILAQVS 309
           G   +++N W G  GT T LH+D + N+   VS
Sbjct: 124 GKLPQAVNLWIGNGGTTTSLHYDAYENLYCVVS 156

This cupin like domain shares similarity to the JmjC domain. Length = 247

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 339
KOG2132355 consensus Uncharacterized conserved protein, conta 100.0
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 99.94
KOG2508 437 consensus Predicted phospholipase [Lipid transport 99.87
KOG2130 407 consensus Phosphatidylserine-specific receptor Ptd 99.8
KOG2131 427 consensus Uncharacterized conserved protein, conta 98.91
COG2850 383 Uncharacterized conserved protein [Function unknow 97.71
smart0055857 JmjC A domain family that is part of the cupin met 97.07
PF08007 319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 96.98
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-55  Score=413.20  Aligned_cols=273  Identities=40%  Similarity=0.578  Sum_probs=222.5

Q ss_pred             HHHHHHhhhccccCCCCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHhHhHhhccCCcChhhHHHHHHHHHhHhhcCCc
Q 019532           45 ARDLAWEQLHSGPWHSVLPVWRDAYSMACLHGAKYHYRNGEFKEALRVLDMGVLMGGPVLRKDLDSAIETLSLKAREGEN  124 (339)
Q Consensus        45 ~~~~a~ekL~~g~w~~V~~~wR~~Y~~~~l~~a~~~~~~~~~~~~i~~lD~~limgg~~~~~~l~~~~~~~~~~~~~~~~  124 (339)
                      ++++||||||||||++|+..||++|+++|++++++.++++.+.+|++ ||||+|||+......+....+.+.    .+..
T Consensus        22 ~l~~awe~l~tg~~~~v~~~wr~~y~~~c~~~~~~~~~~~~~~~al~-~D~gllmg~~~~~d~~l~va~~~~----~~~~   96 (355)
T KOG2132|consen   22 ALDPAWEKLNTGHWSFVDRVWRRLYAIACLAKALIEFQAPLVYAALK-LDMGLLMGNIGLGDSLLKVASELK----FGYY   96 (355)
T ss_pred             ccCchhhhhccCccccCCchHHHHHHHHHHHHHHhhcccchhHHHHh-hCHHHHhhchhcchHHHHHHHHhh----ccCc
Confidence            58999999999999999999999999999999999999999999999 999999999876333322222221    1110


Q ss_pred             ccccccccccchhhhhhhhhhcccCCCCCcCcCcccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHhHHHH
Q 019532          125 ERFGEREANRLVSEEFNTAKALQVLPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKR  204 (339)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~I~R~~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~dYL~~  204 (339)
                      +...-...-...+ +.........+|.... +..+++.+.+++++|..+++.+++|+++.|.+.||||+++|+ ++||.+
T Consensus        97 ~~~~~~~~~~~~p-~~e~~~~~~~ip~~~~-~~~~~~~~~~~l~~~l~d~~~~~~p~~~l~~~~hwpa~~kw~-l~~l~~  173 (355)
T KOG2132|consen   97 SDKPAAVALNFKP-NREENKVHEFIPKVQL-EIDVPGEDRLSLQEFLNDTVGRGTPVILLGFNWHWPAIQKWS-LGYLQQ  173 (355)
T ss_pred             ccchhhhhccCCC-Cccccccccccchhhh-hhhhccccchHHHHHHHHhhcCCCceEEecccccchHhhhcc-hhHHHh
Confidence            0000000000000 1112223444665543 567888899999999999999999999999999999999996 999999


Q ss_pred             HhCCccEEEEecCccccCCceeeeecHHHHHHHHHhCCCCCCccchhccchhhhhhHHhhhccCCCCccccCCCCC--cc
Q 019532          205 VAGDRTVPVEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGGEL--RS  282 (339)
Q Consensus       205 ~~G~r~VpVe~g~~y~~~~w~q~~mt~~eFl~~~~~~~~~~~~~~YLaq~~L~~qiP~L~~Di~iPdy~~~~~~~~--~~  282 (339)
                      ..|.|+||||+|.+|.+++|+|..|++.+|+.+....+  +.++.|+|||.+|+|+|+|+.||.+||||+..+.+.  ..
T Consensus       174 va~~rTvpvEvg~~y~~~~w~q~l~t~~~g~~R~~~~~--p~~~~YlAqh~lfdqi~elk~Di~iPDyc~~~~f~~~~v~  251 (355)
T KOG2132|consen  174 VAGNRTVPVEVGSTYADEDWSQNLMTQIKGIKRCILFE--PRECLYLAQHHLFDQIPELKFDISIPDYCSFPNFENEVVD  251 (355)
T ss_pred             cccceeeeeecccccchhHHHhhhHHHhhhhhhhhcCC--ccccchhhhhhhhccchhhhhccCCCceeecCCCCccccc
Confidence            99999999999999999999999999999999998876  447899999999999999999999999998765554  68


Q ss_pred             ceEEEcCCCCCCccccCCCCCeeEEEEEEEeeecCC---CcccccccC
Q 019532          283 LNAWFGPAGTVTPLHHDPHHNILAQVSLYCALSQRT---STFRRLWLN  327 (339)
Q Consensus       283 ~n~WiGp~gT~TPLH~Dp~~Nll~QV~G~Kr~~~~~---~~~~~~~~~  327 (339)
                      +|+|+||+||+||+|+|++||+++||.|+|++.++.   ++++|...+
T Consensus       252 ~~~w~GpaGtV~pih~dp~hNi~~qv~G~k~i~l~~p~~s~~lyP~d~  299 (355)
T KOG2132|consen  252 INAWIGPAGTVLPIHMDPWHNILSQVFGRKRIRLYPPEDSGALYPTDT  299 (355)
T ss_pred             eeEEeccCCceeccccccccceeeeeecceEEEEecCcccCCCCCccc
Confidence            999999999999999999999999999999965554   566777654

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism] Back     alignment and domain information
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms] Back     alignment and domain information
>COG2850 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
4aap_A239 Crystal Structure Of Jmjd5 Domain Of Human Lysine-S 1e-34
3uyj_A248 Crystal Structure Of Jmjd5 Catalytic Core Domain In 2e-34
4gjz_A235 Jmjd5 In Complex With 2-Oxoglutarate Length = 235 4e-34
4gjy_A235 Jmjd5 In Complex With N-Oxalylglycine Length = 235 7e-34
>pdb|4AAP|A Chain A, Crystal Structure Of Jmjd5 Domain Of Human Lysine-Specific Demethylase 8 (Kdm8) In Complex With N-Oxalylglycine (Nog) Length = 239 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 153 SLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVP 212
           S+  K V +    SL+ F  ++ + G PVI+     HWP    W+ L+Y++ +AG RTVP
Sbjct: 1   SMLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVP 59
Query: 213 VEVGKNYLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDY 272
           VEVG  Y  ++W Q L+  ++F+ +   N        YLAQHQLFDQI EL+ DI IPDY
Sbjct: 60  VEVGSRYTDEEWSQTLMTVNEFISKYIVNEPRDV--GYLAQHQLFDQIPELKQDISIPDY 117
Query: 273 CFVGGGELR--SLNAWFGPAGTVTPLHHDPHHNILAQV 308
           C +G GE    ++NAWFGP GT++PLH DP  N L QV
Sbjct: 118 CSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQV 155
>pdb|3UYJ|A Chain A, Crystal Structure Of Jmjd5 Catalytic Core Domain In Complex With Nickle And Alpha-Kg Length = 248 Back     alignment and structure
>pdb|4GJZ|A Chain A, Jmjd5 In Complex With 2-Oxoglutarate Length = 235 Back     alignment and structure
>pdb|4GJY|A Chain A, Jmjd5 In Complex With N-Oxalylglycine Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query339
3uyj_A248 Lysine-specific demethylase 8; jellyroll-like all 1e-49
3al5_A 338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 6e-40
3d8c_A 349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 3e-38
3k2o_A 336 Bifunctional arginine demethylase and lysyl-hydro 1e-34
1vrb_A 342 Putative asparaginyl hydroxylase; 2636534, structu 9e-14
3kv9_A 397 JMJC domain-containing histone demethylation prote 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
3pua_A 392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 9e-06
4diq_A 489 Lysine-specific demethylase NO66; structural genom 2e-05
3k3o_A 371 PHF8, PHD finger protein 8; histone demethylase, c 5e-04
>3uyj_A Lysine-specific demethylase 8; jellyroll-like all beta fold, nuclear, oxidored; HET: AKG; 2.35A {Homo sapiens} PDB: 4aap_A* Length = 248 Back     alignment and structure
 Score =  165 bits (419), Expect = 1e-49
 Identities = 70/153 (45%), Positives = 94/153 (61%), Gaps = 5/153 (3%)

Query: 159 VVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKN 218
           V +    SL+ F  ++ + G PVI+     HWP    W+ L+Y++ +AG RTVPVEVG  
Sbjct: 16  VPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVPVEVGSR 74

Query: 219 YLCQDWKQELIPFSQFLERIQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGG 278
           Y  ++W Q L+  ++F+ +   N        YLAQHQLFDQI EL+ DI IPDYC +G G
Sbjct: 75  YTDEEWSQTLMTVNEFISKYIVNEPRD--VGYLAQHQLFDQIPELKQDISIPDYCSLGDG 132

Query: 279 ELR--SLNAWFGPAGTVTPLHHDPHHNILAQVS 309
           E    ++NAWFGP GT++PLH DP  N L QV 
Sbjct: 133 EEEEITINAWFGPQGTISPLHQDPQQNFLVQVM 165
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Length = 338 Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Length = 349 Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Length = 336 Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Length = 342 Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Length = 397 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Length = 392 Back     alignment and structure
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Length = 489 Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Length = 371 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 100.0
3al5_A 338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 99.96
3k2o_A 336 Bifunctional arginine demethylase and lysyl-hydro 99.96
3d8c_A 349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 99.93
2yu1_A 451 JMJC domain-containing histone demethylation PROT; 99.75
3kv9_A 397 JMJC domain-containing histone demethylation prote 99.63
3kv5_D 488 JMJC domain-containing histone demethylation prote 99.62
3k3o_A 371 PHF8, PHD finger protein 8; histone demethylase, c 99.62
3pua_A 392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 99.56
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 99.55
1vrb_A 342 Putative asparaginyl hydroxylase; 2636534, structu 99.54
2xdv_A 442 MYC-induced nuclear antigen; ribosome biogenesis, 99.37
4diq_A 489 Lysine-specific demethylase NO66; structural genom 98.73
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.01
2ypd_A 392 Probable JMJC domain-containing histone demethyla 96.74
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-35  Score=263.56  Aligned_cols=160  Identities=44%  Similarity=0.832  Sum_probs=139.5

Q ss_pred             cccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHhHHHHHhCCccEEEEecCccccCCceeeeecHHHHHHH
Q 019532          158 LVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKNYLCQDWKQELIPFSQFLER  237 (339)
Q Consensus       158 ~I~R~~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~dYL~~~~G~r~VpVe~g~~y~~~~w~q~~mt~~eFl~~  237 (339)
                      .|+|++.||+++|.++|+.+++||||+|++++|||+++|+ ++||++++|++.|+|+.+..+.+..+....|+|++|++.
T Consensus         2 tipri~~pS~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~-~~yL~~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~   80 (235)
T 4gjz_A            2 TVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWS-LEYIQEIAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISK   80 (235)
T ss_dssp             BCCEEESCCHHHHHHHTTTTTCCEEEESSSTTSHHHHHCS-HHHHHHHHTTSEEEEEEC-------CEEEEEEHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHhcCCCcEEEeCCCcCCcccccCC-HHHHHHHcCCCeEEEEecCcccCCccceeeccHHHHHHH
Confidence            5899999999999999999999999999999999999998 999999999999999999988888899999999999999


Q ss_pred             HHhCCCCCCccchhccchhhhhhHHhhhccCCCCccccCCC--CCccceEEEcCCCCCCccccCCCCCeeEEEEEEEeee
Q 019532          238 IQSNGSSASVPTYLAQHQLFDQINELRNDICIPDYCFVGGG--ELRSLNAWFGPAGTVTPLHHDPHHNILAQVSLYCALS  315 (339)
Q Consensus       238 ~~~~~~~~~~~~YLaq~~L~~qiP~L~~Di~iPdy~~~~~~--~~~~~n~WiGp~gT~TPLH~Dp~~Nll~QV~G~Kr~~  315 (339)
                      +....  .....|++++.+.+++|+|.+|+.+|+++.....  .....|+|||++||+|++|+|+++|++|||.|+|++.
T Consensus        81 ~~~~~--~~~~~y~~~~~~~~~~~~l~~d~~~p~~~~~~~~~~~~~~~~~wiG~~gs~t~~H~D~~~n~~~qv~G~K~w~  158 (235)
T 4gjz_A           81 YIVNE--PRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLVQVMGRKYIR  158 (235)
T ss_dssp             HTSSC--CSSCEEEEEECHHHHCHHHHTTCCCCGGGGGSSSCGGGCEEEEEEECTTCEEEEECCSSEEEEEEEESCEEEE
T ss_pred             HhhcC--CcccceeehhhhhhhhHHHHHhhcCCccccccccccCccceEEEEeCCCCCceeeeccccceEEEEeeeEeeE
Confidence            87765  5677999999999999999999999998765432  2346799999999999999999999999999999977


Q ss_pred             cCCCc
Q 019532          316 QRTST  320 (339)
Q Consensus       316 ~~~~~  320 (339)
                      ++.|+
T Consensus       159 L~pP~  163 (235)
T 4gjz_A          159 LYSPQ  163 (235)
T ss_dssp             EECGG
T ss_pred             EcCcc
Confidence            77664
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Back     alignment and structure
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Back     alignment and structure
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 339
d1h2ka_ 335 b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibit 7e-26
d1vrba1 319 b.82.2.11 (A:8-326) Putative asparaginyl hydroxyla 1e-16
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Length = 335 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 7e-26
 Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 27/183 (14%)

Query: 149 LPNRSLSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGD 208
           L + S   + + + S         E   +  PV++TD    +PA   W+ L+YL+   G+
Sbjct: 18  LRSYSFPTRPIPRLSQSDPRAE--ELIENEEPVVLTDTNLVYPALK-WD-LEYLQENIGN 73

Query: 209 RTVPVEVGKNY---------------LCQDWKQELIPFSQFLERIQ-SNGSSASVPTYLA 252
               V     +                     +E + F +F+E++Q           YL 
Sbjct: 74  GDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQ 133

Query: 253 QHQLFDQINELRNDICIPDYCFV-------GGGELRSLNAWFGPAGTVTPLHHDPHHNIL 305
           Q        ++  D    ++ ++       G G+L S     G  G VTP H+D   N  
Sbjct: 134 QTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFF 193

Query: 306 AQV 308
           AQ+
Sbjct: 194 AQI 196
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Length = 319 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query339
d1h2ka_ 335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 99.92
d1vrba1 319 Putative asparaginyl hydroxylase YxbC {Bacillus su 99.66
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.3e-26  Score=216.54  Aligned_cols=163  Identities=24%  Similarity=0.328  Sum_probs=128.7

Q ss_pred             cCcCcccccCCCCHHHHHHhhhcCCCcEEEecCCCCCccccCCCCHhHHHHHhCCccEEEEecCc----ccc--------
Q 019532          154 LSCKLVVKRSALSLEGFLSEYFLSGSPVIITDCMAHWPARTNWNDLDYLKRVAGDRTVPVEVGKN----YLC--------  221 (339)
Q Consensus       154 ~~~~~I~R~~~~S~e~F~~~y~~~~~PvVI~g~~~~WPA~~kWs~~dYL~~~~G~r~VpVe~g~~----y~~--------  221 (339)
                      ++..+|+|++..++  |.++|+.+++||||+|++++|||+ ||+ ++||++.+|++.|+|+.+..    |.+        
T Consensus        23 ~~~~~vpr~~~~~~--~~e~y~~~~~PvVi~g~~~~Wpa~-kWt-~dyL~~~~Gd~~V~v~~~~~~~~~~~~~~~~~~~~   98 (335)
T d1h2ka_          23 FPTRPIPRLSQSDP--RAEELIENEEPVVLTDTNLVYPAL-KWD-LEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQ   98 (335)
T ss_dssp             SCEEECCEECTTCH--HHHHHHHTTCCEEESCCCTTGGGG-GCC-HHHHHHHSCSCCEEEEEESSSBCCCCCGGGGGGGT
T ss_pred             CCCcccCccCCCCc--CHHHHhcCCCCEEEeCCCCCCCcc-cCC-HHHHHHhhCCceEEEEEecCccccccccccccccc
Confidence            34568999998777  456799999999999999999998 698 99999999999999997542    111        


Q ss_pred             ---CCceeeeecHHHHHHHHHhCC-CCCCccchhccchhhhhhHHhhhccCCCCcccc-------CCCCCccceEEEcCC
Q 019532          222 ---QDWKQELIPFSQFLERIQSNG-SSASVPTYLAQHQLFDQINELRNDICIPDYCFV-------GGGELRSLNAWFGPA  290 (339)
Q Consensus       222 ---~~w~q~~mt~~eFl~~~~~~~-~~~~~~~YLaq~~L~~qiP~L~~Di~iPdy~~~-------~~~~~~~~n~WiGp~  290 (339)
                         .......|++++|++.+.... .......|+++.......+++..|+..|++++.       ..+.....++|||++
T Consensus        99 ~~~~~~~~~~~~~~ef~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lwiG~~  178 (335)
T d1h2ka_          99 NFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGME  178 (335)
T ss_dssp             TCCCSEEEEEECHHHHHHHHHHHHHTTCCCEEEEEEECCTTSCHHHHHHHHTSCHHHHHHHHHHHTCCCEEECEEEEECT
T ss_pred             ccccccchhcccHHHHHHHHHhccccCCCcceEhhhccccccChhhhcccccCcccccchhhccccccCCcceEEEEcCC
Confidence               113467899999999986432 124567899887766677888888877765432       123344679999999


Q ss_pred             CCCCccccCCCCCeeEEEEEEEeeecCCCc
Q 019532          291 GTVTPLHHDPHHNILAQVSLYCALSQRTST  320 (339)
Q Consensus       291 gT~TPLH~Dp~~Nll~QV~G~Kr~~~~~~~  320 (339)
                      ||.||+|+|+++|++|||.|+|++.+++|+
T Consensus       179 gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~  208 (335)
T d1h2ka_         179 GNVTPAHYDEQQNFFAQIKGYKRCILFPPD  208 (335)
T ss_dssp             TCEEEEECCSEEEEEEEEESCEEEEEECGG
T ss_pred             CCCCccccccccceEEEeccceEEEEeccc
Confidence            999999999999999999999998777653
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure